--- _id: '10384' abstract: - lang: eng text: 'Recent studies aimed at investigating artificial analogs of bacterial colonies have shown that low-density suspensions of self-propelled particles confined in two dimensions can assemble into finite aggregates that merge and split, but have a typical size that remains constant (living clusters). In this Letter, we address the problem of the formation of living clusters and crystals of active particles in three dimensions. We study two systems: self-propelled particles interacting via a generic attractive potential and colloids that can move toward each other as a result of active agents (e.g., by molecular motors). In both cases, fluidlike “living” clusters form. We explain this general feature in terms of the balance between active forces and regression to thermodynamic equilibrium. This balance can be quantified in terms of a dimensionless number that allows us to collapse the observed clustering behavior onto a universal curve. We also discuss how active motion affects the kinetics of crystal formation.' acknowledgement: This work was supported by the ERC Advanced Grant 227758, the National Science Foundation under Career Grant No. DMR-0846426, the Wolfson Merit Award 2007/R3 of the Royal Society of London and the EPSRC Programme Grant EP/I001352/1. BMM acknowledge T. Curk and A. Ballard for useful discussions. C. V. acknowledges financial support from a Juan de la Cierva Fellowship, from the Marie Curie Integration Grant PCIG-GA-2011-303941 ANISOKINEQ, and from the National Project FIS2010- 16159. S. A-U acknowledges support from the Alexander von Humboldt Foundation. article_number: '245702' article_processing_charge: No article_type: original author: - first_name: B. M. full_name: Mognetti, B. M. last_name: Mognetti - first_name: Anđela full_name: Šarić, Anđela id: bf63d406-f056-11eb-b41d-f263a6566d8b last_name: Šarić orcid: 0000-0002-7854-2139 - first_name: S. full_name: Angioletti-Uberti, S. last_name: Angioletti-Uberti - first_name: A. full_name: Cacciuto, A. last_name: Cacciuto - first_name: C. full_name: Valeriani, C. last_name: Valeriani - first_name: D. full_name: Frenkel, D. last_name: Frenkel citation: ama: Mognetti BM, Šarić A, Angioletti-Uberti S, Cacciuto A, Valeriani C, Frenkel D. Living clusters and crystals from low-density suspensions of active colloids. Physical Review Letters. 2013;111(24). doi:10.1103/physrevlett.111.245702 apa: Mognetti, B. M., Šarić, A., Angioletti-Uberti, S., Cacciuto, A., Valeriani, C., & Frenkel, D. (2013). Living clusters and crystals from low-density suspensions of active colloids. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.111.245702 chicago: Mognetti, B. M., Anđela Šarić, S. Angioletti-Uberti, A. Cacciuto, C. Valeriani, and D. Frenkel. “Living Clusters and Crystals from Low-Density Suspensions of Active Colloids.” Physical Review Letters. American Physical Society, 2013. https://doi.org/10.1103/physrevlett.111.245702. ieee: B. M. Mognetti, A. Šarić, S. Angioletti-Uberti, A. Cacciuto, C. Valeriani, and D. Frenkel, “Living clusters and crystals from low-density suspensions of active colloids,” Physical Review Letters, vol. 111, no. 24. American Physical Society, 2013. ista: Mognetti BM, Šarić A, Angioletti-Uberti S, Cacciuto A, Valeriani C, Frenkel D. 2013. Living clusters and crystals from low-density suspensions of active colloids. Physical Review Letters. 111(24), 245702. mla: Mognetti, B. M., et al. “Living Clusters and Crystals from Low-Density Suspensions of Active Colloids.” Physical Review Letters, vol. 111, no. 24, 245702, American Physical Society, 2013, doi:10.1103/physrevlett.111.245702. short: B.M. Mognetti, A. Šarić, S. Angioletti-Uberti, A. Cacciuto, C. Valeriani, D. Frenkel, Physical Review Letters 111 (2013). date_created: 2021-11-29T13:29:31Z date_published: 2013-12-11T00:00:00Z date_updated: 2021-11-29T14:05:19Z day: '11' doi: 10.1103/physrevlett.111.245702 extern: '1' external_id: arxiv: - '1311.4681' pmid: - '24483677' intvolume: ' 111' issue: '24' keyword: - general physics and astronomy language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/1311.4681 month: '12' oa: 1 oa_version: Preprint pmid: 1 publication: Physical Review Letters publication_identifier: eissn: - 1079-7114 issn: - 0031-9007 publication_status: published publisher: American Physical Society quality_controlled: '1' scopus_import: '1' status: public title: Living clusters and crystals from low-density suspensions of active colloids type: journal_article user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9 volume: 111 year: '2013' ... --- _id: '10386' abstract: - lang: eng text: In this paper we review recent numerical and theoretical developments of particle self-assembly on fluid and elastic membranes and compare them to available experimental realizations. We discuss the problem and its applications in biology and materials science, and give an overview of numerical models and strategies to study these systems across all length-scales. As this is a very broad field, this review focuses exclusively on surface-driven aggregation of nanoparticles that are at least one order of magnitude larger than the surface thickness and are adsorbed onto it. In this regime, all chemical details of the surface can be ignored in favor of a coarse-grained representation, and the collective behavior of many particles can be monitored and analyzed. We review the existing literature on how the mechanical properties and the geometry of the surface affect the structure of the particle aggregates and how these can drive shape deformation on the surface. acknowledgement: This work was supported by the National Science Foundation under Career Grant No. DMR 0846426. The authors thank J. C. Pàmies for many fruitful discussions on the subject. article_number: '6677' article_processing_charge: No article_type: original author: - first_name: Anđela full_name: Šarić, Anđela id: bf63d406-f056-11eb-b41d-f263a6566d8b last_name: Šarić orcid: 0000-0002-7854-2139 - first_name: Angelo full_name: Cacciuto, Angelo last_name: Cacciuto citation: ama: Šarić A, Cacciuto A. Self-assembly of nanoparticles adsorbed on fluid and elastic membranes. Soft Matter. 2013;9(29). doi:10.1039/c3sm50188d apa: Šarić, A., & Cacciuto, A. (2013). Self-assembly of nanoparticles adsorbed on fluid and elastic membranes. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/c3sm50188d chicago: Šarić, Anđela, and Angelo Cacciuto. “Self-Assembly of Nanoparticles Adsorbed on Fluid and Elastic Membranes.” Soft Matter. Royal Society of Chemistry, 2013. https://doi.org/10.1039/c3sm50188d. ieee: A. Šarić and A. Cacciuto, “Self-assembly of nanoparticles adsorbed on fluid and elastic membranes,” Soft Matter, vol. 9, no. 29. Royal Society of Chemistry, 2013. ista: Šarić A, Cacciuto A. 2013. Self-assembly of nanoparticles adsorbed on fluid and elastic membranes. Soft Matter. 9(29), 6677. mla: Šarić, Anđela, and Angelo Cacciuto. “Self-Assembly of Nanoparticles Adsorbed on Fluid and Elastic Membranes.” Soft Matter, vol. 9, no. 29, 6677, Royal Society of Chemistry, 2013, doi:10.1039/c3sm50188d. short: A. Šarić, A. Cacciuto, Soft Matter 9 (2013). date_created: 2021-11-29T14:06:32Z date_published: 2013-05-03T00:00:00Z date_updated: 2021-11-29T14:29:31Z day: '03' doi: 10.1039/c3sm50188d extern: '1' intvolume: ' 9' issue: '29' keyword: - condensed matter physics - general chemistry language: - iso: eng main_file_link: - url: https://pubs.rsc.org/en/content/articlehtml/2013/sm/c3sm50188d month: '05' oa_version: None publication: Soft Matter publication_identifier: eissn: - 1744-6848 issn: - 1744-683X publication_status: published publisher: Royal Society of Chemistry quality_controlled: '1' scopus_import: '1' status: public title: Self-assembly of nanoparticles adsorbed on fluid and elastic membranes type: journal_article user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9 volume: 9 year: '2013' ... --- _id: '10385' abstract: - lang: eng text: We show how self-assembly of sticky nanoparticles can drive radial collapse of thin-walled nanotubes. Using numerical simulations, we study the transition as a function of the geometric and elastic parameters of the nanotube and the binding strength of the nanoparticles. We find that it is possible to derive a simple scaling law relating all these parameters, and estimate bounds for the onset conditions leading to the collapse of the nanotube. We also study the reverse process – the nanoparticle release from the folded state – and find that the stability of the collapsed state can be greatly improved by increasing the bending rigidity of the nanotubes. Our results suggest ways to strengthen the mechanical properties of nanotubes, but also indicate that the control of nanoparticle self-assembly on these nanotubes can lead to nanoparticle-laden responsive materials. acknowledgement: This work was supported by the National Science Foundation under Career Grant no. DMR-0846426. article_processing_charge: No article_type: original author: - first_name: Joseph A. full_name: Napoli, Joseph A. last_name: Napoli - first_name: Anđela full_name: Šarić, Anđela id: bf63d406-f056-11eb-b41d-f263a6566d8b last_name: Šarić orcid: 0000-0002-7854-2139 - first_name: Angelo full_name: Cacciuto, Angelo last_name: Cacciuto citation: ama: Napoli JA, Šarić A, Cacciuto A. Collapsing nanoparticle-laden nanotubes. Soft Matter. 2013;9(37):8881-8886. doi:10.1039/c3sm51495a apa: Napoli, J. A., Šarić, A., & Cacciuto, A. (2013). Collapsing nanoparticle-laden nanotubes. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/c3sm51495a chicago: Napoli, Joseph A., Anđela Šarić, and Angelo Cacciuto. “Collapsing Nanoparticle-Laden Nanotubes.” Soft Matter. Royal Society of Chemistry, 2013. https://doi.org/10.1039/c3sm51495a. ieee: J. A. Napoli, A. Šarić, and A. Cacciuto, “Collapsing nanoparticle-laden nanotubes,” Soft Matter, vol. 9, no. 37. Royal Society of Chemistry, pp. 8881–8886, 2013. ista: Napoli JA, Šarić A, Cacciuto A. 2013. Collapsing nanoparticle-laden nanotubes. Soft Matter. 9(37), 8881–8886. mla: Napoli, Joseph A., et al. “Collapsing Nanoparticle-Laden Nanotubes.” Soft Matter, vol. 9, no. 37, Royal Society of Chemistry, 2013, pp. 8881–86, doi:10.1039/c3sm51495a. short: J.A. Napoli, A. Šarić, A. Cacciuto, Soft Matter 9 (2013) 8881–8886. date_created: 2021-11-29T13:31:24Z date_published: 2013-08-08T00:00:00Z date_updated: 2021-11-29T14:05:23Z day: '08' doi: 10.1039/c3sm51495a extern: '1' intvolume: ' 9' issue: '37' keyword: - condensed matter physics - general chemistry language: - iso: eng month: '08' oa_version: None page: 8881-8886 publication: Soft Matter publication_identifier: eissn: - 1744-6848 issn: - 1744-683X publication_status: published publisher: Royal Society of Chemistry quality_controlled: '1' scopus_import: '1' status: public title: Collapsing nanoparticle-laden nanotubes type: journal_article user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9 volume: 9 year: '2013' ... --- _id: '10396' abstract: - lang: eng text: Stimfit is a free cross-platform software package for viewing and analyzing electrophysiological data. It supports most standard file types for cellular neurophysiology and other biomedical formats. Its analysis algorithms have been used and validated in several experimental laboratories. Its embedded Python scripting interface makes Stimfit highly extensible and customizable. article_number: '000010151520134181' article_processing_charge: No article_type: original author: - first_name: Alois full_name: Schlögl, Alois id: 45BF87EE-F248-11E8-B48F-1D18A9856A87 last_name: Schlögl orcid: 0000-0002-5621-8100 - first_name: Peter M full_name: Jonas, Peter M id: 353C1B58-F248-11E8-B48F-1D18A9856A87 last_name: Jonas orcid: 0000-0001-5001-4804 - first_name: C. full_name: Schmidt-Hieber, C. last_name: Schmidt-Hieber - first_name: S. J. full_name: Guzman, S. J. last_name: Guzman citation: ama: 'Schlögl A, Jonas PM, Schmidt-Hieber C, Guzman SJ. Stimfit: A fast visualization and analysis environment for cellular neurophysiology. Biomedical Engineering / Biomedizinische Technik. 2013;58(SI-1-Track-G). doi:10.1515/bmt-2013-4181' apa: 'Schlögl, A., Jonas, P. M., Schmidt-Hieber, C., & Guzman, S. J. (2013). Stimfit: A fast visualization and analysis environment for cellular neurophysiology. Biomedical Engineering / Biomedizinische Technik. Graz, Austria: De Gruyter. https://doi.org/10.1515/bmt-2013-4181' chicago: 'Schlögl, Alois, Peter M Jonas, C. Schmidt-Hieber, and S. J. Guzman. “Stimfit: A Fast Visualization and Analysis Environment for Cellular Neurophysiology.” Biomedical Engineering / Biomedizinische Technik. De Gruyter, 2013. https://doi.org/10.1515/bmt-2013-4181.' ieee: 'A. Schlögl, P. M. Jonas, C. Schmidt-Hieber, and S. J. Guzman, “Stimfit: A fast visualization and analysis environment for cellular neurophysiology,” Biomedical Engineering / Biomedizinische Technik, vol. 58, no. SI-1-Track-G. De Gruyter, 2013.' ista: 'Schlögl A, Jonas PM, Schmidt-Hieber C, Guzman SJ. 2013. Stimfit: A fast visualization and analysis environment for cellular neurophysiology. Biomedical Engineering / Biomedizinische Technik. 58(SI-1-Track-G), 000010151520134181.' mla: 'Schlögl, Alois, et al. “Stimfit: A Fast Visualization and Analysis Environment for Cellular Neurophysiology.” Biomedical Engineering / Biomedizinische Technik, vol. 58, no. SI-1-Track-G, 000010151520134181, De Gruyter, 2013, doi:10.1515/bmt-2013-4181.' short: A. Schlögl, P.M. Jonas, C. Schmidt-Hieber, S.J. Guzman, Biomedical Engineering / Biomedizinische Technik 58 (2013). conference: end_date: 2013-09-21 location: Graz, Austria name: 'BMT: Biomedizinische Technik ' start_date: 2013-09-19 date_created: 2021-12-01T14:35:35Z date_published: 2013-08-01T00:00:00Z date_updated: 2021-12-02T12:51:12Z day: '01' ddc: - '005' - '610' department: - _id: PeJo doi: 10.1515/bmt-2013-4181 external_id: pmid: - '24042795' file: - access_level: open_access checksum: cdfc5339b530a25d6079f7223f0b1f16 content_type: application/pdf creator: schloegl date_created: 2021-12-01T14:38:08Z date_updated: 2021-12-01T14:38:08Z file_id: '10397' file_name: Schloegl_Abstract-BMT2013.pdf file_size: 149825 relation: main_file success: 1 file_date_updated: 2021-12-01T14:38:08Z has_accepted_license: '1' intvolume: ' 58' issue: SI-1-Track-G keyword: - biomedical engineering - data analysis - free software language: - iso: eng month: '08' oa: 1 oa_version: Submitted Version pmid: 1 publication: Biomedical Engineering / Biomedizinische Technik publication_identifier: eissn: - 1862-278X issn: - 0013-5585 publication_status: published publisher: De Gruyter quality_controlled: '1' status: public title: 'Stimfit: A fast visualization and analysis environment for cellular neurophysiology' type: journal_article user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9 volume: 58 year: '2013' ... --- _id: '10749' abstract: - lang: eng text: Fluxoid quantization provides a direct means to study phase coherence. In cuprate superconductors, there have been observations which suggest that phase coherent superconducting fluctuations may persist at temperatures significantly above Tc. The focus of this work is to study the vortex states in mesoscopic cuprate superconducting samples to directly probe phase coherence over a wide range of temperatures. We present cantilever torque susceptometry measurements of micron and sub-micron size Bi2212 rings and disks. The high sensitivity of this technique allowed observation of transitions between different fluxoid states of a single ring, and the discrete vortex states of micron size disks. The dependence of magnetic susceptibility on diameter and wall thickness of the ring was investigated. Measurements were made at different values of the in-plane magnetic field, and over a wide range of temperatures. acknowledgement: This work was supported by the Center for Emergent Superconductivity, an Energy Frontier Research Center funded by the US DOE, Office of Science. alternative_title: - Bulletin of the American Physical Society article_number: N36.00001 article_processing_charge: No author: - first_name: Hryhoriy full_name: Polshyn, Hryhoriy id: edfc7cb1-526e-11ec-b05a-e6ecc27e4e48 last_name: Polshyn orcid: 0000-0001-8223-8896 - first_name: Raffi full_name: Budakian, Raffi last_name: Budakian - first_name: Genda full_name: Gu, Genda last_name: Gu citation: ama: 'Polshyn H, Budakian R, Gu G. Cantilever micro-susceptometry of mesoscopic Bi2212 samples. In: APS March Meeting 2013. Vol 58. American Physical Society; 2013.' apa: 'Polshyn, H., Budakian, R., & Gu, G. (2013). Cantilever micro-susceptometry of mesoscopic Bi2212 samples. In APS March Meeting 2013 (Vol. 58). Baltimore, MD, United States: American Physical Society.' chicago: Polshyn, Hryhoriy, Raffi Budakian, and Genda Gu. “Cantilever Micro-Susceptometry of Mesoscopic Bi2212 Samples.” In APS March Meeting 2013, Vol. 58. American Physical Society, 2013. ieee: H. Polshyn, R. Budakian, and G. Gu, “Cantilever micro-susceptometry of mesoscopic Bi2212 samples,” in APS March Meeting 2013, Baltimore, MD, United States, 2013, vol. 58, no. 1. ista: 'Polshyn H, Budakian R, Gu G. 2013. Cantilever micro-susceptometry of mesoscopic Bi2212 samples. APS March Meeting 2013. APS: American Physical Society, Bulletin of the American Physical Society, vol. 58, N36.00001.' mla: Polshyn, Hryhoriy, et al. “Cantilever Micro-Susceptometry of Mesoscopic Bi2212 Samples.” APS March Meeting 2013, vol. 58, no. 1, N36.00001, American Physical Society, 2013. short: H. Polshyn, R. Budakian, G. Gu, in:, APS March Meeting 2013, American Physical Society, 2013. conference: end_date: 2013-03-22 location: Baltimore, MD, United States name: 'APS: American Physical Society' start_date: 2013-03-18 date_created: 2022-02-08T10:34:29Z date_published: 2013-03-01T00:00:00Z date_updated: 2022-02-08T10:48:06Z day: '01' extern: '1' intvolume: ' 58' issue: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://meetings.aps.org/Meeting/MAR13/Event/186873 month: '03' oa: 1 oa_version: Published Version publication: APS March Meeting 2013 publication_identifier: issn: - 0003-0503 publication_status: published publisher: American Physical Society quality_controlled: '1' status: public title: Cantilever micro-susceptometry of mesoscopic Bi2212 samples type: conference user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9 volume: 58 year: '2013' ... --- _id: '10895' abstract: - lang: eng text: 'Due to their sessile lifestyles, plants need to deal with the limitations and stresses imposed by the changing environment. Plants cope with these by a remarkable developmental flexibility, which is embedded in their strategy to survive. Plants can adjust their size, shape and number of organs, bend according to gravity and light, and regenerate tissues that were damaged, utilizing a coordinating, intercellular signal, the plant hormone, auxin. Another versatile signal is the cation, Ca2+, which is a crucial second messenger for many rapid cellular processes during responses to a wide range of endogenous and environmental signals, such as hormones, light, drought stress and others. Auxin is a good candidate for one of these Ca2+-activating signals. However, the role of auxin-induced Ca2+ signaling is poorly understood. Here, we will provide an overview of possible developmental and physiological roles, as well as mechanisms underlying the interconnection of Ca2+ and auxin signaling. ' article_processing_charge: No article_type: original author: - first_name: Steffen full_name: Vanneste, Steffen last_name: Vanneste - first_name: Jiří full_name: Friml, Jiří id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 citation: ama: 'Vanneste S, Friml J. Calcium: The missing link in auxin action. Plants. 2013;2(4):650-675. doi:10.3390/plants2040650' apa: 'Vanneste, S., & Friml, J. (2013). Calcium: The missing link in auxin action. Plants. MDPI. https://doi.org/10.3390/plants2040650' chicago: 'Vanneste, Steffen, and Jiří Friml. “Calcium: The Missing Link in Auxin Action.” Plants. MDPI, 2013. https://doi.org/10.3390/plants2040650.' ieee: 'S. Vanneste and J. Friml, “Calcium: The missing link in auxin action,” Plants, vol. 2, no. 4. MDPI, pp. 650–675, 2013.' ista: 'Vanneste S, Friml J. 2013. Calcium: The missing link in auxin action. Plants. 2(4), 650–675.' mla: 'Vanneste, Steffen, and Jiří Friml. “Calcium: The Missing Link in Auxin Action.” Plants, vol. 2, no. 4, MDPI, 2013, pp. 650–75, doi:10.3390/plants2040650.' short: S. Vanneste, J. Friml, Plants 2 (2013) 650–675. date_created: 2022-03-21T07:13:49Z date_published: 2013-10-21T00:00:00Z date_updated: 2022-03-21T12:15:29Z day: '21' ddc: - '580' department: - _id: JiFr doi: 10.3390/plants2040650 external_id: pmid: - '27137397' file: - access_level: open_access checksum: fb4ff2e820e344e253c9197544610be6 content_type: application/pdf creator: dernst date_created: 2022-03-21T12:12:56Z date_updated: 2022-03-21T12:12:56Z file_id: '10916' file_name: 2013_Plants_Vanneste.pdf file_size: 670188 relation: main_file success: 1 file_date_updated: 2022-03-21T12:12:56Z has_accepted_license: '1' intvolume: ' 2' issue: '4' keyword: - Plant Science - Ecology - Ecology - Evolution - Behavior and Systematics language: - iso: eng license: https://creativecommons.org/licenses/by/3.0/ month: '10' oa: 1 oa_version: Published Version page: 650-675 pmid: 1 publication: Plants publication_identifier: issn: - 2223-7747 publication_status: published publisher: MDPI quality_controlled: '1' scopus_import: '1' status: public title: 'Calcium: The missing link in auxin action' tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode name: Creative Commons Attribution 3.0 Unported (CC BY 3.0) short: CC BY (3.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 2 year: '2013' ... --- _id: '10898' abstract: - lang: eng text: A prominent remedy to multicore scalability issues in concurrent data structure implementations is to relax the sequential specification of the data structure. We present distributed queues (DQ), a new family of relaxed concurrent queue implementations. DQs implement relaxed queues with linearizable emptiness check and either configurable or bounded out-of-order behavior or pool behavior. Our experiments show that DQs outperform and outscale in micro- and macrobenchmarks all strict and relaxed queue as well as pool implementations that we considered. article_number: '17' article_processing_charge: No author: - first_name: Andreas full_name: Haas, Andreas last_name: Haas - first_name: Michael full_name: Lippautz, Michael last_name: Lippautz - first_name: Thomas A full_name: Henzinger, Thomas A id: 40876CD8-F248-11E8-B48F-1D18A9856A87 last_name: Henzinger orcid: 0000-0002-2985-7724 - first_name: Hannes full_name: Payer, Hannes last_name: Payer - first_name: Ana full_name: Sokolova, Ana last_name: Sokolova - first_name: Christoph M. full_name: Kirsch, Christoph M. last_name: Kirsch - first_name: Ali full_name: Sezgin, Ali id: 4C7638DA-F248-11E8-B48F-1D18A9856A87 last_name: Sezgin citation: ama: 'Haas A, Lippautz M, Henzinger TA, et al. Distributed queues in shared memory: Multicore performance and scalability through quantitative relaxation. In: Proceedings of the ACM International Conference on Computing Frontiers - CF ’13. ACM Press; 2013. doi:10.1145/2482767.2482789' apa: 'Haas, A., Lippautz, M., Henzinger, T. A., Payer, H., Sokolova, A., Kirsch, C. M., & Sezgin, A. (2013). Distributed queues in shared memory: Multicore performance and scalability through quantitative relaxation. In Proceedings of the ACM International Conference on Computing Frontiers - CF ’13. Ischia, Italy: ACM Press. https://doi.org/10.1145/2482767.2482789' chicago: 'Haas, Andreas, Michael Lippautz, Thomas A Henzinger, Hannes Payer, Ana Sokolova, Christoph M. Kirsch, and Ali Sezgin. “Distributed Queues in Shared Memory: Multicore Performance and Scalability through Quantitative Relaxation.” In Proceedings of the ACM International Conference on Computing Frontiers - CF ’13. ACM Press, 2013. https://doi.org/10.1145/2482767.2482789.' ieee: 'A. Haas et al., “Distributed queues in shared memory: Multicore performance and scalability through quantitative relaxation,” in Proceedings of the ACM International Conference on Computing Frontiers - CF ’13, Ischia, Italy, 2013, no. 5.' ista: 'Haas A, Lippautz M, Henzinger TA, Payer H, Sokolova A, Kirsch CM, Sezgin A. 2013. Distributed queues in shared memory: Multicore performance and scalability through quantitative relaxation. Proceedings of the ACM International Conference on Computing Frontiers - CF ’13. CF: Conference on Computing Frontiers, 17.' mla: 'Haas, Andreas, et al. “Distributed Queues in Shared Memory: Multicore Performance and Scalability through Quantitative Relaxation.” Proceedings of the ACM International Conference on Computing Frontiers - CF ’13, no. 5, 17, ACM Press, 2013, doi:10.1145/2482767.2482789.' short: A. Haas, M. Lippautz, T.A. Henzinger, H. Payer, A. Sokolova, C.M. Kirsch, A. Sezgin, in:, Proceedings of the ACM International Conference on Computing Frontiers - CF ’13, ACM Press, 2013. conference: end_date: 2013-05-16 location: Ischia, Italy name: 'CF: Conference on Computing Frontiers' start_date: 2013-05-14 date_created: 2022-03-21T07:33:22Z date_published: 2013-05-01T00:00:00Z date_updated: 2022-06-21T08:01:19Z day: '01' department: - _id: ToHe doi: 10.1145/2482767.2482789 issue: '5' language: - iso: eng month: '05' oa_version: None publication: Proceedings of the ACM International Conference on Computing Frontiers - CF '13 publication_identifier: isbn: - 978-145032053-5 publication_status: published publisher: ACM Press quality_controlled: '1' scopus_import: '1' status: public title: 'Distributed queues in shared memory: Multicore performance and scalability through quantitative relaxation' type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2013' ... --- _id: '10899' article_processing_charge: No author: - first_name: Nicholas H full_name: Barton, Nicholas H id: 4880FE40-F248-11E8-B48F-1D18A9856A87 last_name: Barton orcid: 0000-0002-8548-5240 citation: ama: 'Barton NH. Differentiation. In: Encyclopedia of Biodiversity. 2nd ed. Elsevier; 2013:508-515. doi:10.1016/b978-0-12-384719-5.00031-9' apa: Barton, N. H. (2013). Differentiation. In Encyclopedia of Biodiversity (2nd ed., pp. 508–515). Elsevier. https://doi.org/10.1016/b978-0-12-384719-5.00031-9 chicago: Barton, Nicholas H. “Differentiation.” In Encyclopedia of Biodiversity, 2nd ed., 508–15. Elsevier, 2013. https://doi.org/10.1016/b978-0-12-384719-5.00031-9. ieee: N. H. Barton, “Differentiation,” in Encyclopedia of Biodiversity, 2nd ed., Elsevier, 2013, pp. 508–515. ista: 'Barton NH. 2013.Differentiation. In: Encyclopedia of Biodiversity. , 508–515.' mla: Barton, Nicholas H. “Differentiation.” Encyclopedia of Biodiversity, 2nd ed., Elsevier, 2013, pp. 508–15, doi:10.1016/b978-0-12-384719-5.00031-9. short: N.H. Barton, in:, Encyclopedia of Biodiversity, 2nd ed., Elsevier, 2013, pp. 508–515. date_created: 2022-03-21T07:46:22Z date_published: 2013-01-01T00:00:00Z date_updated: 2022-06-20T09:18:06Z day: '01' department: - _id: NiBa doi: 10.1016/b978-0-12-384719-5.00031-9 edition: '2' keyword: - Adaptive landscape - Cline - Coalescent process - Gene flow - Hybrid zone - Local adaptation - Natural selection - Neutral theory - Population structure - Speciation language: - iso: eng month: '01' oa_version: None page: 508-515 publication: Encyclopedia of Biodiversity publication_identifier: isbn: - 978-0-12-384720-1 publication_status: published publisher: Elsevier quality_controlled: '1' scopus_import: '1' status: public title: Differentiation type: book_chapter user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2013' ... --- _id: '11086' abstract: - lang: eng text: Faithful execution of developmental gene expression programs occurs at multiple levels and involves many different components such as transcription factors, histone-modification enzymes, and mRNA processing proteins. Recent evidence suggests that nucleoporins, well known components that control nucleo-cytoplasmic trafficking, have wide-ranging functions in developmental gene regulation that potentially extend beyond their role in nuclear transport. Whether the unexpected role of nuclear pore proteins in transcription regulation, which initially has been described in fungi and flies, also applies to human cells is unknown. Here we show at a genome-wide level that the nuclear pore protein NUP98 associates with developmentally regulated genes active during human embryonic stem cell differentiation. Overexpression of a dominant negative fragment of NUP98 levels decreases expression levels of NUP98-bound genes. In addition, we identify two modes of developmental gene regulation by NUP98 that are differentiated by the spatial localization of NUP98 target genes. Genes in the initial stage of developmental induction can associate with NUP98 that is embedded in the nuclear pores at the nuclear periphery. Alternatively, genes that are highly induced can interact with NUP98 in the nuclear interior, away from the nuclear pores. This work demonstrates for the first time that NUP98 dynamically associates with the human genome during differentiation, revealing a role of a nuclear pore protein in regulating developmental gene expression programs. article_number: e1003308 article_processing_charge: No article_type: original author: - first_name: Yun full_name: Liang, Yun last_name: Liang - first_name: Tobias M. full_name: Franks, Tobias M. last_name: Franks - first_name: Maria C. full_name: Marchetto, Maria C. last_name: Marchetto - first_name: Fred H. full_name: Gage, Fred H. last_name: Gage - first_name: Martin W full_name: HETZER, Martin W id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed last_name: HETZER orcid: 0000-0002-2111-992X citation: ama: Liang Y, Franks TM, Marchetto MC, Gage FH, Hetzer M. Dynamic association of NUP98 with the human genome. PLoS Genetics. 2013;9(2). doi:10.1371/journal.pgen.1003308 apa: Liang, Y., Franks, T. M., Marchetto, M. C., Gage, F. H., & Hetzer, M. (2013). Dynamic association of NUP98 with the human genome. PLoS Genetics. Public Library of Science. https://doi.org/10.1371/journal.pgen.1003308 chicago: Liang, Yun, Tobias M. Franks, Maria C. Marchetto, Fred H. Gage, and Martin Hetzer. “Dynamic Association of NUP98 with the Human Genome.” PLoS Genetics. Public Library of Science, 2013. https://doi.org/10.1371/journal.pgen.1003308. ieee: Y. Liang, T. M. Franks, M. C. Marchetto, F. H. Gage, and M. Hetzer, “Dynamic association of NUP98 with the human genome,” PLoS Genetics, vol. 9, no. 2. Public Library of Science, 2013. ista: Liang Y, Franks TM, Marchetto MC, Gage FH, Hetzer M. 2013. Dynamic association of NUP98 with the human genome. PLoS Genetics. 9(2), e1003308. mla: Liang, Yun, et al. “Dynamic Association of NUP98 with the Human Genome.” PLoS Genetics, vol. 9, no. 2, e1003308, Public Library of Science, 2013, doi:10.1371/journal.pgen.1003308. short: Y. Liang, T.M. Franks, M.C. Marchetto, F.H. Gage, M. Hetzer, PLoS Genetics 9 (2013). date_created: 2022-04-07T07:50:59Z date_published: 2013-02-28T00:00:00Z date_updated: 2022-07-18T08:45:58Z day: '28' doi: 10.1371/journal.pgen.1003308 extern: '1' external_id: pmid: - '23468646' intvolume: ' 9' issue: '2' keyword: - Cancer Research - Genetics (clinical) - Genetics - Molecular Biology - Ecology - Evolution - Behavior and Systematics language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1371/journal.pgen.1003308 month: '02' oa: 1 oa_version: Published Version pmid: 1 publication: PLoS Genetics publication_identifier: issn: - 1553-7404 publication_status: published publisher: Public Library of Science quality_controlled: '1' scopus_import: '1' status: public title: Dynamic association of NUP98 with the human genome type: journal_article user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd volume: 9 year: '2013' ... --- _id: '11087' abstract: - lang: eng text: Intracellular proteins with long lifespans have recently been linked to age-dependent defects, ranging from decreased fertility to the functional decline of neurons. Why long-lived proteins exist in metabolically active cellular environments and how they are maintained over time remains poorly understood. Here, we provide a system-wide identification of proteins with exceptional lifespans in the rat brain. These proteins are inefficiently replenished despite being translated robustly throughout adulthood. Using nucleoporins as a paradigm for long-term protein persistence, we found that nuclear pore complexes (NPCs) are maintained over a cell’s life through slow but finite exchange of even its most stable subcomplexes. This maintenance is limited, however, as some nucleoporin levels decrease during aging, providing a rationale for the previously observed age-dependent deterioration of NPC function. Our identification of a long-lived proteome reveals cellular components that are at increased risk for damage accumulation, linking long-term protein persistence to the cellular aging process. article_processing_charge: No article_type: original author: - first_name: Brandon H. full_name: Toyama, Brandon H. last_name: Toyama - first_name: Jeffrey N. full_name: Savas, Jeffrey N. last_name: Savas - first_name: Sung Kyu full_name: Park, Sung Kyu last_name: Park - first_name: Michael S. full_name: Harris, Michael S. last_name: Harris - first_name: Nicholas T. full_name: Ingolia, Nicholas T. last_name: Ingolia - first_name: John R. full_name: Yates, John R. last_name: Yates - first_name: Martin W full_name: HETZER, Martin W id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed last_name: HETZER orcid: 0000-0002-2111-992X citation: ama: Toyama BH, Savas JN, Park SK, et al. Identification of long-lived proteins reveals exceptional stability of essential cellular structures. Cell. 2013;154(5):971-982. doi:10.1016/j.cell.2013.07.037 apa: Toyama, B. H., Savas, J. N., Park, S. K., Harris, M. S., Ingolia, N. T., Yates, J. R., & Hetzer, M. (2013). Identification of long-lived proteins reveals exceptional stability of essential cellular structures. Cell. Elsevier. https://doi.org/10.1016/j.cell.2013.07.037 chicago: Toyama, Brandon H., Jeffrey N. Savas, Sung Kyu Park, Michael S. Harris, Nicholas T. Ingolia, John R. Yates, and Martin Hetzer. “Identification of Long-Lived Proteins Reveals Exceptional Stability of Essential Cellular Structures.” Cell. Elsevier, 2013. https://doi.org/10.1016/j.cell.2013.07.037. ieee: B. H. Toyama et al., “Identification of long-lived proteins reveals exceptional stability of essential cellular structures,” Cell, vol. 154, no. 5. Elsevier, pp. 971–982, 2013. ista: Toyama BH, Savas JN, Park SK, Harris MS, Ingolia NT, Yates JR, Hetzer M. 2013. Identification of long-lived proteins reveals exceptional stability of essential cellular structures. Cell. 154(5), 971–982. mla: Toyama, Brandon H., et al. “Identification of Long-Lived Proteins Reveals Exceptional Stability of Essential Cellular Structures.” Cell, vol. 154, no. 5, Elsevier, 2013, pp. 971–82, doi:10.1016/j.cell.2013.07.037. short: B.H. Toyama, J.N. Savas, S.K. Park, M.S. Harris, N.T. Ingolia, J.R. Yates, M. Hetzer, Cell 154 (2013) 971–982. date_created: 2022-04-07T07:51:08Z date_published: 2013-08-29T00:00:00Z date_updated: 2022-07-18T08:50:47Z day: '29' doi: 10.1016/j.cell.2013.07.037 extern: '1' external_id: pmid: - '23993091' intvolume: ' 154' issue: '5' keyword: - General Biochemistry - Genetics and Molecular Biology language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1016/j.cell.2013.07.037 month: '08' oa: 1 oa_version: Published Version page: 971-982 pmid: 1 publication: Cell publication_identifier: issn: - 0092-8674 publication_status: published publisher: Elsevier quality_controlled: '1' scopus_import: '1' status: public title: Identification of long-lived proteins reveals exceptional stability of essential cellular structures type: journal_article user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd volume: 154 year: '2013' ... --- _id: '11085' abstract: - lang: eng text: During mitotic exit, missegregated chromosomes can recruit their own nuclear envelope (NE) to form micronuclei (MN). MN have reduced functioning compared to primary nuclei in the same cell, although the two compartments appear to be structurally comparable. Here we show that over 60% of MN undergo an irreversible loss of compartmentalization during interphase due to NE collapse. This disruption of the MN, which is induced by defects in nuclear lamina assembly, drastically reduces nuclear functions and can trigger massive DNA damage. MN disruption is associated with chromatin compaction and invasion of endoplasmic reticulum (ER) tubules into the chromatin. We identified disrupted MN in both major subtypes of human non-small-cell lung cancer, suggesting that disrupted MN could be a useful objective biomarker for genomic instability in solid tumors. Our study shows that NE collapse is a key event underlying MN dysfunction and establishes a link between aberrant NE organization and aneuploidy. article_processing_charge: No article_type: original author: - first_name: Emily M. full_name: Hatch, Emily M. last_name: Hatch - first_name: Andrew H. full_name: Fischer, Andrew H. last_name: Fischer - first_name: Thomas J. full_name: Deerinck, Thomas J. last_name: Deerinck - first_name: Martin W full_name: HETZER, Martin W id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed last_name: HETZER orcid: 0000-0002-2111-992X citation: ama: Hatch EM, Fischer AH, Deerinck TJ, Hetzer M. Catastrophic nuclear envelope collapse in cancer cell micronuclei. Cell. 2013;154(1):47-60. doi:10.1016/j.cell.2013.06.007 apa: Hatch, E. M., Fischer, A. H., Deerinck, T. J., & Hetzer, M. (2013). Catastrophic nuclear envelope collapse in cancer cell micronuclei. Cell. Elsevier. https://doi.org/10.1016/j.cell.2013.06.007 chicago: Hatch, Emily M., Andrew H. Fischer, Thomas J. Deerinck, and Martin Hetzer. “Catastrophic Nuclear Envelope Collapse in Cancer Cell Micronuclei.” Cell. Elsevier, 2013. https://doi.org/10.1016/j.cell.2013.06.007. ieee: E. M. Hatch, A. H. Fischer, T. J. Deerinck, and M. Hetzer, “Catastrophic nuclear envelope collapse in cancer cell micronuclei,” Cell, vol. 154, no. 1. Elsevier, pp. 47–60, 2013. ista: Hatch EM, Fischer AH, Deerinck TJ, Hetzer M. 2013. Catastrophic nuclear envelope collapse in cancer cell micronuclei. Cell. 154(1), 47–60. mla: Hatch, Emily M., et al. “Catastrophic Nuclear Envelope Collapse in Cancer Cell Micronuclei.” Cell, vol. 154, no. 1, Elsevier, 2013, pp. 47–60, doi:10.1016/j.cell.2013.06.007. short: E.M. Hatch, A.H. Fischer, T.J. Deerinck, M. Hetzer, Cell 154 (2013) 47–60. date_created: 2022-04-07T07:50:51Z date_published: 2013-07-03T00:00:00Z date_updated: 2022-07-18T08:45:47Z day: '03' doi: 10.1016/j.cell.2013.06.007 extern: '1' external_id: pmid: - '23827674' intvolume: ' 154' issue: '1' keyword: - General Biochemistry - Genetics and Molecular Biology language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1016/j.cell.2013.06.007 month: '07' oa: 1 oa_version: Published Version page: 47-60 pmid: 1 publication: Cell publication_identifier: issn: - 0092-8674 publication_status: published publisher: Elsevier quality_controlled: '1' scopus_import: '1' status: public title: Catastrophic nuclear envelope collapse in cancer cell micronuclei type: journal_article user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd volume: 154 year: '2013' ... --- _id: '11088' abstract: - lang: eng text: 'The crowded intracellular environment poses a formidable challenge to experimental and theoretical analyses of intracellular transport mechanisms. Our measurements of single-particle trajectories in cytoplasm and their random-walk interpretations elucidate two of these mechanisms: molecular diffusion in crowded environments and cytoskeletal transport along microtubules. We employed acousto-optic deflector microscopy to map out the three-dimensional trajectories of microspheres migrating in the cytosolic fraction of a cellular extract. Classical Brownian motion (BM), continuous time random walk, and fractional BM were alternatively used to represent these trajectories. The comparison of the experimental and numerical data demonstrates that cytoskeletal transport along microtubules and diffusion in the cytosolic fraction exhibit anomalous (nonFickian) behavior and posses statistically distinct signatures. Among the three random-walk models used, continuous time random walk provides the best representation of diffusion, whereas microtubular transport is accurately modeled with fractional BM.' article_processing_charge: No article_type: original author: - first_name: Benjamin M. full_name: Regner, Benjamin M. last_name: Regner - first_name: Dejan full_name: Vučinić, Dejan last_name: Vučinić - first_name: Cristina full_name: Domnisoru, Cristina last_name: Domnisoru - first_name: Thomas M. full_name: Bartol, Thomas M. last_name: Bartol - first_name: Martin W full_name: HETZER, Martin W id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed last_name: HETZER orcid: 0000-0002-2111-992X - first_name: Daniel M. full_name: Tartakovsky, Daniel M. last_name: Tartakovsky - first_name: Terrence J. full_name: Sejnowski, Terrence J. last_name: Sejnowski citation: ama: Regner BM, Vučinić D, Domnisoru C, et al. Anomalous diffusion of single particles in cytoplasm. Biophysical Journal. 2013;104(8):1652-1660. doi:10.1016/j.bpj.2013.01.049 apa: Regner, B. M., Vučinić, D., Domnisoru, C., Bartol, T. M., Hetzer, M., Tartakovsky, D. M., & Sejnowski, T. J. (2013). Anomalous diffusion of single particles in cytoplasm. Biophysical Journal. Elsevier. https://doi.org/10.1016/j.bpj.2013.01.049 chicago: Regner, Benjamin M., Dejan Vučinić, Cristina Domnisoru, Thomas M. Bartol, Martin Hetzer, Daniel M. Tartakovsky, and Terrence J. Sejnowski. “Anomalous Diffusion of Single Particles in Cytoplasm.” Biophysical Journal. Elsevier, 2013. https://doi.org/10.1016/j.bpj.2013.01.049. ieee: B. M. Regner et al., “Anomalous diffusion of single particles in cytoplasm,” Biophysical Journal, vol. 104, no. 8. Elsevier, pp. 1652–1660, 2013. ista: Regner BM, Vučinić D, Domnisoru C, Bartol TM, Hetzer M, Tartakovsky DM, Sejnowski TJ. 2013. Anomalous diffusion of single particles in cytoplasm. Biophysical Journal. 104(8), 1652–1660. mla: Regner, Benjamin M., et al. “Anomalous Diffusion of Single Particles in Cytoplasm.” Biophysical Journal, vol. 104, no. 8, Elsevier, 2013, pp. 1652–60, doi:10.1016/j.bpj.2013.01.049. short: B.M. Regner, D. Vučinić, C. Domnisoru, T.M. Bartol, M. Hetzer, D.M. Tartakovsky, T.J. Sejnowski, Biophysical Journal 104 (2013) 1652–1660. date_created: 2022-04-07T07:51:26Z date_published: 2013-04-16T00:00:00Z date_updated: 2022-07-18T08:51:01Z day: '16' doi: 10.1016/j.bpj.2013.01.049 extern: '1' external_id: pmid: - '23601312' intvolume: ' 104' issue: '8' keyword: - Biophysics language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1016/j.bpj.2013.01.049 month: '04' oa: 1 oa_version: Published Version page: 1652-1660 pmid: 1 publication: Biophysical Journal publication_identifier: issn: - 0006-3495 publication_status: published publisher: Elsevier quality_controlled: '1' scopus_import: '1' status: public title: Anomalous diffusion of single particles in cytoplasm type: journal_article user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd volume: 104 year: '2013' ... --- _id: '11083' abstract: - lang: eng text: Nuclear pore complex (NPC) proteins are known for their critical roles in regulating nucleocytoplasmic traffic of macromolecules across the nuclear envelope. However, recent findings suggest that some nucleoporins (Nups), including Nup98, have additional functions in developmental gene regulation. Nup98, which exhibits transcription-dependent mobility at the NPC but can also bind chromatin away from the nuclear envelope, is frequently involved in chromosomal translocations in a subset of patients suffering from acute myeloid leukemia (AML). A common paradigm suggests that Nup98 translocations cause aberrant transcription when they are recuited to aberrant genomic loci. Importantly, this model fails to account for the potential loss of wild type (WT) Nup98 function in the presence of Nup98 translocation mutants. Here we examine how the cell might regulate Nup98 nucleoplasmic protein levels to control transcription in healthy cells. In addition, we discuss the possibility that dominant negative Nup98 fusion proteins disrupt the transcriptional activity of WT Nup98 in the nucleoplasm to drive AML. article_processing_charge: No article_type: letter_note author: - first_name: Tobias M. full_name: Franks, Tobias M. last_name: Franks - first_name: Martin W full_name: HETZER, Martin W id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed last_name: HETZER orcid: 0000-0002-2111-992X citation: ama: Franks TM, Hetzer M. The role of Nup98 in transcription regulation in healthy and diseased cells. Trends in Cell Biology. 2013;23(3):112-117. doi:10.1016/j.tcb.2012.10.013 apa: Franks, T. M., & Hetzer, M. (2013). The role of Nup98 in transcription regulation in healthy and diseased cells. Trends in Cell Biology. Elsevier. https://doi.org/10.1016/j.tcb.2012.10.013 chicago: Franks, Tobias M., and Martin Hetzer. “The Role of Nup98 in Transcription Regulation in Healthy and Diseased Cells.” Trends in Cell Biology. Elsevier, 2013. https://doi.org/10.1016/j.tcb.2012.10.013. ieee: T. M. Franks and M. Hetzer, “The role of Nup98 in transcription regulation in healthy and diseased cells,” Trends in Cell Biology, vol. 23, no. 3. Elsevier, pp. 112–117, 2013. ista: Franks TM, Hetzer M. 2013. The role of Nup98 in transcription regulation in healthy and diseased cells. Trends in Cell Biology. 23(3), 112–117. mla: Franks, Tobias M., and Martin Hetzer. “The Role of Nup98 in Transcription Regulation in Healthy and Diseased Cells.” Trends in Cell Biology, vol. 23, no. 3, Elsevier, 2013, pp. 112–17, doi:10.1016/j.tcb.2012.10.013. short: T.M. Franks, M. Hetzer, Trends in Cell Biology 23 (2013) 112–117. date_created: 2022-04-07T07:50:33Z date_published: 2013-03-01T00:00:00Z date_updated: 2022-07-18T08:45:34Z day: '01' doi: 10.1016/j.tcb.2012.10.013 extern: '1' external_id: pmid: - '23246429' intvolume: ' 23' issue: '3' keyword: - Cell Biology language: - iso: eng month: '03' oa_version: None page: 112-117 pmid: 1 publication: Trends in Cell Biology publication_identifier: issn: - 0962-8924 publication_status: published publisher: Elsevier quality_controlled: '1' scopus_import: '1' status: public title: The role of Nup98 in transcription regulation in healthy and diseased cells type: journal_article user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd volume: 23 year: '2013' ... --- _id: '11084' abstract: - lang: eng text: Protein turnover is an effective way of maintaining a functional proteome, as old and potentially damaged polypeptides are destroyed and replaced by newly synthesized copies. An increasing number of intracellular proteins, however, have been identified that evade this turnover process and instead are maintained over a cell's lifetime. This diverse group of long-lived proteins might be particularly prone to accumulation of damage and thus have a crucial role in the functional deterioration of key regulatory processes during ageing. article_processing_charge: No article_type: original author: - first_name: Brandon H. full_name: Toyama, Brandon H. last_name: Toyama - first_name: Martin W full_name: HETZER, Martin W id: 86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed last_name: HETZER orcid: 0000-0002-2111-992X citation: ama: 'Toyama BH, Hetzer M. Protein homeostasis: Live long, won’t prosper. Nature Reviews Molecular Cell Biology. 2013;14:55-61. doi:10.1038/nrm3496' apa: 'Toyama, B. H., & Hetzer, M. (2013). Protein homeostasis: Live long, won’t prosper. Nature Reviews Molecular Cell Biology. Springer Nature. https://doi.org/10.1038/nrm3496' chicago: 'Toyama, Brandon H., and Martin Hetzer. “Protein Homeostasis: Live Long, Won’t Prosper.” Nature Reviews Molecular Cell Biology. Springer Nature, 2013. https://doi.org/10.1038/nrm3496.' ieee: 'B. H. Toyama and M. Hetzer, “Protein homeostasis: Live long, won’t prosper,” Nature Reviews Molecular Cell Biology, vol. 14. Springer Nature, pp. 55–61, 2013.' ista: 'Toyama BH, Hetzer M. 2013. Protein homeostasis: Live long, won’t prosper. Nature Reviews Molecular Cell Biology. 14, 55–61.' mla: 'Toyama, Brandon H., and Martin Hetzer. “Protein Homeostasis: Live Long, Won’t Prosper.” Nature Reviews Molecular Cell Biology, vol. 14, Springer Nature, 2013, pp. 55–61, doi:10.1038/nrm3496.' short: B.H. Toyama, M. Hetzer, Nature Reviews Molecular Cell Biology 14 (2013) 55–61. date_created: 2022-04-07T07:50:43Z date_published: 2013-01-01T00:00:00Z date_updated: 2022-07-18T08:37:53Z day: '01' doi: 10.1038/nrm3496 extern: '1' external_id: pmid: - '23258296' intvolume: ' 14' keyword: - Cell Biology - Molecular Biology language: - iso: eng month: '01' oa_version: None page: 55-61 pmid: 1 publication: Nature Reviews Molecular Cell Biology publication_identifier: issn: - 1471-0072 - 1471-0080 publication_status: published publisher: Springer Nature quality_controlled: '1' scopus_import: '1' status: public title: 'Protein homeostasis: Live long, won''t prosper' type: journal_article user_id: 72615eeb-f1f3-11ec-aa25-d4573ddc34fd volume: 14 year: '2013' ... --- _id: '115' abstract: - lang: eng text: We present the design and performance characterization of a new experimental technique for measuring individual particle charges in large ensembles of macroscopic grains. The measurement principle is qualitatively similar to that used in determining the elementary charge by Millikan in that it follows individual particle trajectories. However, by taking advantage of new technology we are able to work with macroscopic grains and achieve several orders of magnitude better resolution in charge to mass ratios. By observing freely falling grains accelerated in a horizontal electric field with a co-falling, high-speed video camera, we dramatically increase particle tracking time and measurement precision. Keeping the granular medium under vacuum, we eliminate air drag, leaving the electrostatic force as the primary source of particle accelerations in the co-moving frame. Because the technique is based on direct imaging, we can distinguish between different particle types during the experiment, opening up the possibility of studying charge transfer processes between different particle species. For the ∼300 μm diameter grains reported here, we achieve an average acceleration resolution of ∼0.008 m/s2, a force resolution of ∼500 pN, and a median charge resolution ∼6× 104 elementary charges per grain (corresponding to surface charge densities ∼1 elementary charges per μm2). The primary source of error is indeterminacy in the grain mass, but with higher resolution cameras and better optics this can be further improved. The high degree of resolution and the ability to visually identify particles of different species or sizes with direct imaging make this a powerful new tool to characterize charging processes in granular media. acknowledgement: This work was supported financially by the National Science Foundation (NSF) through its Materials Research Science and Engineering Center (MRSEC) program (DMR-0820054) and by the US Army Research Office through Grant No. W911NF-12-1-0182. S.R.W. acknowledges support from a University of Chicago Millikan Fellowship. article_number: '025104' author: - first_name: Scott R full_name: Waitukaitis, Scott R id: 3A1FFC16-F248-11E8-B48F-1D18A9856A87 last_name: Waitukaitis orcid: 0000-0002-2299-3176 - first_name: Heinrich full_name: Jaeger, Heinrich last_name: Jaeger citation: ama: Waitukaitis SR, Jaeger H. In situ granular charge measurement by free-fall videography. Review of Scientific Instruments. 2013;84(2). doi:10.1063/1.4789496 apa: Waitukaitis, S. R., & Jaeger, H. (2013). In situ granular charge measurement by free-fall videography. Review of Scientific Instruments. AIP. https://doi.org/10.1063/1.4789496 chicago: Waitukaitis, Scott R, and Heinrich Jaeger. “In Situ Granular Charge Measurement by Free-Fall Videography.” Review of Scientific Instruments. AIP, 2013. https://doi.org/10.1063/1.4789496. ieee: S. R. Waitukaitis and H. Jaeger, “In situ granular charge measurement by free-fall videography,” Review of Scientific Instruments, vol. 84, no. 2. AIP, 2013. ista: Waitukaitis SR, Jaeger H. 2013. In situ granular charge measurement by free-fall videography. Review of Scientific Instruments. 84(2), 025104. mla: Waitukaitis, Scott R., and Heinrich Jaeger. “In Situ Granular Charge Measurement by Free-Fall Videography.” Review of Scientific Instruments, vol. 84, no. 2, 025104, AIP, 2013, doi:10.1063/1.4789496. short: S.R. Waitukaitis, H. Jaeger, Review of Scientific Instruments 84 (2013). date_created: 2018-12-11T11:44:42Z date_published: 2013-02-07T00:00:00Z date_updated: 2021-01-12T06:48:39Z day: '07' doi: 10.1063/1.4789496 extern: '1' intvolume: ' 84' issue: '2' language: - iso: eng month: '02' oa_version: None publication: Review of Scientific Instruments publication_status: published publisher: AIP publist_id: '7939' quality_controlled: '1' status: public title: In situ granular charge measurement by free-fall videography type: journal_article user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87 volume: 84 year: '2013' ... --- _id: '11520' abstract: - lang: eng text: We present the spatially resolved Hα dynamics of 16 star-forming galaxies at z ∼ 0.81 using the new KMOS multi-object integral field spectrograph on the ESO Very Large Telescope. These galaxies, selected using 1.18 μm narrowband imaging from the 10 deg2 CFHT-HiZELS survey of the SA 22 hr field, are found in a ∼4 Mpc overdensity of Hα emitters and likely reside in a group/intermediate environment, but not a cluster. We confirm and identify a rich group of star-forming galaxies at z = 0.813 ± 0.003, with 13 galaxies within 1000 km s−1 of each other, and seven within a diameter of 3 Mpc. All of our galaxies are “typical” star-forming galaxies at their redshift, 0.8 ± 0.4 SFR$^*_{z = 0.8}$, spanning a range of specific star formation rates (sSFRs) of 0.2–1.1 Gyr−1 and have a median metallicity very close to solar of 12 + log(O/H) = 8.62 ± 0.06. We measure the spatially resolved Hα dynamics of the galaxies in our sample and show that 13 out of 16 galaxies can be described by rotating disks and use the data to derive inclination corrected rotation speeds of 50–275 km s−1. The fraction of disks within our sample is 75% ± 8%, consistent with previous results based on Hubble Space Telescope morphologies of Hα-selected galaxies at z ∼ 1 and confirming that disks dominate the SFR density at z ∼ 1. Our Hα galaxies are well fitted by the z ∼ 1–2 Tully–Fisher (TF) relation, confirming the evolution seen in the zero point. Apart from having, on average, higher stellar masses and lower sSFRs, our group galaxies at z = 0.81 present the same mass–metallicity and TF relation as z ∼ 1 field galaxies and are all disk galaxies. acknowledgement: 'We thank the referee for many helpful comments and suggestions which greatly improved the clarity and quality of this work. D.S. acknowledges financial support from the Netherlands Organisation for Scientific research (NWO) through a Veni fellowship and also funding from the European Community Seventh Framework Programme (FP7/2007-2013) under grant agreement number RG226604 (OPTICON) which allowed access to CFHT time (proposals: 11BO29 & 12AO19). A.M.S. gratefully acknowledges an STFC Advanced Fellowship through grant number ST/H005234/1. I.R.S., J.P.S., and R.G.B. acknowledge support from the UK Science and Technology Facilities Council (STFC) under ST/I001573/1. I.R.S. acknowledges STFC (ST/J001422/1), the ERC Advanced Investigator program DUSTYGAL and a Royal Society/Wolfson Merit Award. P.N.B. acknowledges support from STFC. R.M.S. acknowledges support from the grant ST/1001573/1. The data presented here are based on observations with the KMOS spectrograph on the ESO/VLT under program 60.A-9460 and can be accessed through the ESO data archive. The authors also wish to acknowledge the help from Michael Hilker in preparing the KMOS observations.' article_number: '139' article_processing_charge: No article_type: original author: - first_name: D. full_name: Sobral, D. last_name: Sobral - first_name: A. M. full_name: Swinbank, A. M. last_name: Swinbank - first_name: J. P. full_name: Stott, J. P. last_name: Stott - first_name: Jorryt J full_name: Matthee, Jorryt J id: 7439a258-f3c0-11ec-9501-9df22fe06720 last_name: Matthee orcid: 0000-0003-2871-127X - first_name: R. G. full_name: Bower, R. G. last_name: Bower - first_name: Ian full_name: Smail, Ian last_name: Smail - first_name: P. full_name: Best, P. last_name: Best - first_name: J. E. full_name: Geach, J. E. last_name: Geach - first_name: R. M. full_name: Sharples, R. M. last_name: Sharples citation: ama: Sobral D, Swinbank AM, Stott JP, et al. The dynamics of z=0.8 H-alpha-selected star-forming galaxies from KMOS/CF-HiZELS. The Astrophysical Journal. 2013;779(2). doi:10.1088/0004-637x/779/2/139 apa: Sobral, D., Swinbank, A. M., Stott, J. P., Matthee, J. J., Bower, R. G., Smail, I., … Sharples, R. M. (2013). The dynamics of z=0.8 H-alpha-selected star-forming galaxies from KMOS/CF-HiZELS. The Astrophysical Journal. IOP Publishing. https://doi.org/10.1088/0004-637x/779/2/139 chicago: Sobral, D., A. M. Swinbank, J. P. Stott, Jorryt J Matthee, R. G. Bower, Ian Smail, P. Best, J. E. Geach, and R. M. Sharples. “The Dynamics of Z=0.8 H-Alpha-Selected Star-Forming Galaxies from KMOS/CF-HiZELS.” The Astrophysical Journal. IOP Publishing, 2013. https://doi.org/10.1088/0004-637x/779/2/139. ieee: D. Sobral et al., “The dynamics of z=0.8 H-alpha-selected star-forming galaxies from KMOS/CF-HiZELS,” The Astrophysical Journal, vol. 779, no. 2. IOP Publishing, 2013. ista: Sobral D, Swinbank AM, Stott JP, Matthee JJ, Bower RG, Smail I, Best P, Geach JE, Sharples RM. 2013. The dynamics of z=0.8 H-alpha-selected star-forming galaxies from KMOS/CF-HiZELS. The Astrophysical Journal. 779(2), 139. mla: Sobral, D., et al. “The Dynamics of Z=0.8 H-Alpha-Selected Star-Forming Galaxies from KMOS/CF-HiZELS.” The Astrophysical Journal, vol. 779, no. 2, 139, IOP Publishing, 2013, doi:10.1088/0004-637x/779/2/139. short: D. Sobral, A.M. Swinbank, J.P. Stott, J.J. Matthee, R.G. Bower, I. Smail, P. Best, J.E. Geach, R.M. Sharples, The Astrophysical Journal 779 (2013). date_created: 2022-07-07T09:14:48Z date_published: 2013-12-03T00:00:00Z date_updated: 2022-08-18T10:43:07Z day: '03' doi: 10.1088/0004-637x/779/2/139 extern: '1' external_id: arxiv: - '1310.3822' intvolume: ' 779' issue: '2' keyword: - Space and Planetary Science - Astronomy and Astrophysics - 'galaxies: evolution – galaxies' - high-redshift – galaxies - starburst language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/1310.3822 month: '12' oa: 1 oa_version: Preprint publication: The Astrophysical Journal publication_identifier: eissn: - 1538-4357 issn: - 0004-637X publication_status: published publisher: IOP Publishing quality_controlled: '1' scopus_import: '1' status: public title: The dynamics of z=0.8 H-alpha-selected star-forming galaxies from KMOS/CF-HiZELS type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 779 year: '2013' ... --- _id: '116' abstract: - lang: eng text: 'We describe a model experiment for dynamic jamming: a two-dimensional collection of initially unjammed disks that are forced into the jammed state by uniaxial compression via a rake. This leads to a stable densification front that travels ahead of the rake, leaving regions behind it jammed. Using disk conservation in conjunction with an upper limit to the packing fraction at jamming onset, we predict the front speed as a function of packing fraction and rake speed. However, we find that the jamming front has a finite width, a feature that cannot be explained by disk conservation alone. This width appears to diverge on approach to jamming, which suggests that it may be related to growing lengthscales encountered in other jamming studies.' acknowledgement: This work was supported by the National Science Foundation (NSF) through its Materials Research Science and Engineering program (DMR-0820054). SRW was supported by the U.S. Department of Energy, Office of Basic Energy Sciences, Division of Materials Sciences and Engineering under Award DE-FG02-03ER46088. LKR acknowledges support through the NSF Research Experience for Undergraduates program. article_number: '44001' author: - first_name: Scott R full_name: Waitukaitis, Scott R id: 3A1FFC16-F248-11E8-B48F-1D18A9856A87 last_name: Waitukaitis orcid: 0000-0002-2299-3176 - first_name: Leah full_name: Roth, Leah last_name: Roth - first_name: Vincenzo full_name: Vitelli, Vincenzo last_name: Vitelli - first_name: Heinrich full_name: Jaeger, Heinrich last_name: Jaeger citation: ama: Waitukaitis SR, Roth L, Vitelli V, Jaeger H. Dynamic jamming fronts. EPL. 2013;102(4). doi:10.1209/0295-5075/102/44001 apa: Waitukaitis, S. R., Roth, L., Vitelli, V., & Jaeger, H. (2013). Dynamic jamming fronts. EPL. Elsevier. https://doi.org/10.1209/0295-5075/102/44001 chicago: Waitukaitis, Scott R, Leah Roth, Vincenzo Vitelli, and Heinrich Jaeger. “Dynamic Jamming Fronts.” EPL. Elsevier, 2013. https://doi.org/10.1209/0295-5075/102/44001. ieee: S. R. Waitukaitis, L. Roth, V. Vitelli, and H. Jaeger, “Dynamic jamming fronts,” EPL, vol. 102, no. 4. Elsevier, 2013. ista: Waitukaitis SR, Roth L, Vitelli V, Jaeger H. 2013. Dynamic jamming fronts. EPL. 102(4), 44001. mla: Waitukaitis, Scott R., et al. “Dynamic Jamming Fronts.” EPL, vol. 102, no. 4, 44001, Elsevier, 2013, doi:10.1209/0295-5075/102/44001. short: S.R. Waitukaitis, L. Roth, V. Vitelli, H. Jaeger, EPL 102 (2013). date_created: 2018-12-11T11:44:43Z date_published: 2013-05-24T00:00:00Z date_updated: 2021-01-12T06:48:44Z day: '24' doi: 10.1209/0295-5075/102/44001 extern: '1' intvolume: ' 102' issue: '4' language: - iso: eng month: '05' oa_version: None publication: EPL publication_status: published publisher: Elsevier publist_id: '7938' quality_controlled: '1' status: public title: Dynamic jamming fronts type: journal_article user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87 volume: 102 year: '2013' ... --- _id: '11671' abstract: - lang: eng text: "Given only the URL of a Web page, can we identify its language? In this article we examine this question. URL-based language classification is useful when the content of the Web page is not available or downloading the content is a waste of bandwidth and time.\r\nWe built URL-based language classifiers for English, German, French, Spanish, and Italian by applying a variety of algorithms and features. As algorithms we used machine learning algorithms which are widely applied for text classification and state-of-art algorithms for language identification of text. As features we used words, various sized n-grams, and custom-made features (our novel feature set). We compared our approaches with two baseline methods, namely classification by country code top-level domains and classification by IP addresses of the hosting Web servers.\r\n\r\nWe trained and tested our classifiers in a 10-fold cross-validation setup on a dataset obtained from the Open Directory Project and from querying a commercial search engine. We obtained the lowest F1-measure for English (94) and the highest F1-measure for German (98) with the best performing classifiers.\r\n\r\nWe also evaluated the performance of our methods: (i) on a set of Web pages written in Adobe Flash and (ii) as part of a language-focused crawler. In the first case, the content of the Web page is hard to extract and in the second page downloading pages of the “wrong” language constitutes a waste of bandwidth. In both settings the best classifiers have a high accuracy with an F1-measure between 95 (for English) and 98 (for Italian) for the Adobe Flash pages and a precision between 90 (for Italian) and 97 (for French) for the language-focused crawler." article_number: '3' article_processing_charge: No article_type: original author: - first_name: Eda full_name: Baykan, Eda last_name: Baykan - first_name: Ingmar full_name: Weber, Ingmar last_name: Weber - first_name: Monika H full_name: Henzinger, Monika H id: 540c9bbd-f2de-11ec-812d-d04a5be85630 last_name: Henzinger orcid: 0000-0002-5008-6530 citation: ama: Baykan E, Weber I, Henzinger MH. A comprehensive study of techniques for URL-based web page language classification. ACM Transactions on the Web. 2013;7(1). doi:10.1145/2435215.2435218 apa: Baykan, E., Weber, I., & Henzinger, M. H. (2013). A comprehensive study of techniques for URL-based web page language classification. ACM Transactions on the Web. Association for Computing Machinery. https://doi.org/10.1145/2435215.2435218 chicago: Baykan, Eda, Ingmar Weber, and Monika H Henzinger. “A Comprehensive Study of Techniques for URL-Based Web Page Language Classification.” ACM Transactions on the Web. Association for Computing Machinery, 2013. https://doi.org/10.1145/2435215.2435218. ieee: E. Baykan, I. Weber, and M. H. Henzinger, “A comprehensive study of techniques for URL-based web page language classification,” ACM Transactions on the Web, vol. 7, no. 1. Association for Computing Machinery, 2013. ista: Baykan E, Weber I, Henzinger MH. 2013. A comprehensive study of techniques for URL-based web page language classification. ACM Transactions on the Web. 7(1), 3. mla: Baykan, Eda, et al. “A Comprehensive Study of Techniques for URL-Based Web Page Language Classification.” ACM Transactions on the Web, vol. 7, no. 1, 3, Association for Computing Machinery, 2013, doi:10.1145/2435215.2435218. short: E. Baykan, I. Weber, M.H. Henzinger, ACM Transactions on the Web 7 (2013). date_created: 2022-07-27T12:50:18Z date_published: 2013-03-01T00:00:00Z date_updated: 2022-09-12T08:51:57Z day: '01' doi: 10.1145/2435215.2435218 extern: '1' intvolume: ' 7' issue: '1' keyword: - Computer Networks and Communications language: - iso: eng month: '03' oa_version: None publication: ACM Transactions on the Web publication_identifier: eissn: - 1559-114X issn: - 1559-1131 publication_status: published publisher: Association for Computing Machinery quality_controlled: '1' scopus_import: '1' status: public title: A comprehensive study of techniques for URL-based web page language classification type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 7 year: '2013' ... --- _id: '117' abstract: - lang: eng text: The packing arrangement of individual particles inside a granular material and the resulting response to applied stresses depend critically on particle-particle interactions. One aspect that recently received attention are nanoscale surface features of particles, which play an important role in determining the strength of cohesive van der Waals and capillary interactions and also affect tribo-charging of grains. We describe experiments on freely falling granular streams that can detect the contributions from all three of these forces. We show that it is possible to measure the charge of individual grains and build up distributions that are detailed enough to provide stringent tests of tribo-charging models currently available. A second aspect concerns particle shape. In this case steric interactions become important and new types of aggregate behavior can be expected when non-convex particle shapes are considered that can interlock or entangle. However, a general connection between the mechanical response of a granular material and the constituents\' shape remains unknown. This has made it infeasible to tackle the "inverse packing problem", namely to start from a given, desired behavior for the aggregate as a whole and then find the particle shape the produces it. We discuss a new approach, using concepts rooted in artificial evolution that provides a way to solve this inverse problem. This approach facilitates exploring the role of arbitrary particle geometry in jammed systems and invites the discovery and design of granular matter with optimized properties. acknowledgement: This work was supported by the NSF MRSEC program under DMR-0820054. Additional support came from the US Army Research Office through W911NF-12-1-0182. author: - first_name: Heinrich full_name: Jaeger, Heinrich last_name: Jaeger - first_name: Marc full_name: Miskin, Marc last_name: Miskin - first_name: Scott R full_name: Waitukaitis, Scott R id: 3A1FFC16-F248-11E8-B48F-1D18A9856A87 last_name: Waitukaitis orcid: 0000-0002-2299-3176 citation: ama: 'Jaeger H, Miskin M, Waitukaitis SR. From nanoscale cohesion to macroscale entanglement: opportunities for designing granular aggregate behaviour by tailoring grain shape and interactions. In: AIP Conference Proceedings. Vol 1542. AIP; 2013:3-6. doi:10.1063/1.4811858' apa: 'Jaeger, H., Miskin, M., & Waitukaitis, S. R. (2013). From nanoscale cohesion to macroscale entanglement: opportunities for designing granular aggregate behaviour by tailoring grain shape and interactions. In AIP Conference Proceedings (Vol. 1542, pp. 3–6). Sydney, Australia: AIP. https://doi.org/10.1063/1.4811858' chicago: 'Jaeger, Heinrich, Marc Miskin, and Scott R Waitukaitis. “From Nanoscale Cohesion to Macroscale Entanglement: Opportunities for Designing Granular Aggregate Behaviour by Tailoring Grain Shape and Interactions.” In AIP Conference Proceedings, 1542:3–6. AIP, 2013. https://doi.org/10.1063/1.4811858.' ieee: 'H. Jaeger, M. Miskin, and S. R. Waitukaitis, “From nanoscale cohesion to macroscale entanglement: opportunities for designing granular aggregate behaviour by tailoring grain shape and interactions,” in AIP Conference Proceedings, Sydney, Australia, 2013, vol. 1542, pp. 3–6.' ista: 'Jaeger H, Miskin M, Waitukaitis SR. 2013. From nanoscale cohesion to macroscale entanglement: opportunities for designing granular aggregate behaviour by tailoring grain shape and interactions. AIP Conference Proceedings. Powders and Grains vol. 1542, 3–6.' mla: 'Jaeger, Heinrich, et al. “From Nanoscale Cohesion to Macroscale Entanglement: Opportunities for Designing Granular Aggregate Behaviour by Tailoring Grain Shape and Interactions.” AIP Conference Proceedings, vol. 1542, AIP, 2013, pp. 3–6, doi:10.1063/1.4811858.' short: H. Jaeger, M. Miskin, S.R. Waitukaitis, in:, AIP Conference Proceedings, AIP, 2013, pp. 3–6. conference: end_date: 2013-07-12 location: Sydney, Australia name: Powders and Grains start_date: 2013-07-08 date_created: 2018-12-11T11:44:43Z date_published: 2013-06-01T00:00:00Z date_updated: 2021-01-12T06:48:49Z day: '01' doi: 10.1063/1.4811858 extern: '1' intvolume: ' 1542' language: - iso: eng month: '06' oa_version: None page: 3 - 6 publication: ' AIP Conference Proceedings' publication_status: published publisher: AIP publist_id: '7937' quality_controlled: '1' status: public title: 'From nanoscale cohesion to macroscale entanglement: opportunities for designing granular aggregate behaviour by tailoring grain shape and interactions' type: conference user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87 volume: 1542 year: '2013' ... --- _id: '11759' abstract: - lang: eng text: Matching markets play a prominent role in economic theory. A prime example of such a market is the sponsored search market. Here, as in other markets of that kind, market equilibria correspond to feasible, envy free, and bidder optimal outcomes. For settings without budgets such an outcome always exists and can be computed in polynomial-time by the so-called Hungarian Method. Moreover, every mechanism that computes such an outcome is incentive compatible. We show that the Hungarian Method can be modified so that it finds a feasible, envy free, and bidder optimal outcome for settings with budgets. We also show that in settings with budgets no mechanism that computes such an outcome can be incentive compatible for all inputs. For inputs in general position, however, the presented mechanism—as any other mechanism that computes such an outcome for settings with budgets—is incentive compatible. article_processing_charge: No article_type: original author: - first_name: Paul full_name: Dütting, Paul last_name: Dütting - first_name: Monika H full_name: Henzinger, Monika H id: 540c9bbd-f2de-11ec-812d-d04a5be85630 last_name: Henzinger orcid: 0000-0002-5008-6530 - first_name: Ingmar full_name: Weber, Ingmar last_name: Weber citation: ama: Dütting P, Henzinger MH, Weber I. Sponsored search, market equilibria, and the Hungarian Method. Information Processing Letters. 2013;113(3):67-73. doi:10.1016/j.ipl.2012.11.006 apa: Dütting, P., Henzinger, M. H., & Weber, I. (2013). Sponsored search, market equilibria, and the Hungarian Method. Information Processing Letters. Elsevier. https://doi.org/10.1016/j.ipl.2012.11.006 chicago: Dütting, Paul, Monika H Henzinger, and Ingmar Weber. “Sponsored Search, Market Equilibria, and the Hungarian Method.” Information Processing Letters. Elsevier, 2013. https://doi.org/10.1016/j.ipl.2012.11.006. ieee: P. Dütting, M. H. Henzinger, and I. Weber, “Sponsored search, market equilibria, and the Hungarian Method,” Information Processing Letters, vol. 113, no. 3. Elsevier, pp. 67–73, 2013. ista: Dütting P, Henzinger MH, Weber I. 2013. Sponsored search, market equilibria, and the Hungarian Method. Information Processing Letters. 113(3), 67–73. mla: Dütting, Paul, et al. “Sponsored Search, Market Equilibria, and the Hungarian Method.” Information Processing Letters, vol. 113, no. 3, Elsevier, 2013, pp. 67–73, doi:10.1016/j.ipl.2012.11.006. short: P. Dütting, M.H. Henzinger, I. Weber, Information Processing Letters 113 (2013) 67–73. date_created: 2022-08-08T11:29:08Z date_published: 2013-02-15T00:00:00Z date_updated: 2022-09-12T09:36:15Z day: '15' doi: 10.1016/j.ipl.2012.11.006 extern: '1' external_id: arxiv: - '0912.1934' intvolume: ' 113' issue: '3' language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/0912.1934 month: '02' oa: 1 oa_version: Preprint page: 67-73 publication: Information Processing Letters publication_identifier: issn: - 0020-0190 publication_status: published publisher: Elsevier quality_controlled: '1' scopus_import: '1' status: public title: Sponsored search, market equilibria, and the Hungarian Method type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 113 year: '2013' ... --- _id: '11793' abstract: - lang: eng text: "We study the problem of maintaining a breadth-first spanning tree (BFS tree) in partially dynamic distributed networks modeling a sequence of either failures or additions of communication links (but not both). We show (1 + ε)-approximation algorithms whose amortized time (over some number of link changes) is sublinear in D, the maximum diameter of the network. This breaks the Θ(D) time bound of recomputing “from scratch”.\r\n\r\nOur technique also leads to a (1 + ε)-approximate incremental algorithm for single-source shortest paths (SSSP) in the sequential (usual RAM) model. Prior to our work, the state of the art was the classic exact algorithm of [9] that is optimal under some assumptions [27]. Our result is the first to show that, in the incremental setting, this bound can be beaten in certain cases if a small approximation is allowed." alternative_title: - LNCS article_processing_charge: No author: - first_name: Monika H full_name: Henzinger, Monika H id: 540c9bbd-f2de-11ec-812d-d04a5be85630 last_name: Henzinger orcid: 0000-0002-5008-6530 - first_name: Sebastian full_name: Krinninger, Sebastian last_name: Krinninger - first_name: Danupon full_name: Nanongkai, Danupon last_name: Nanongkai citation: ama: 'Henzinger MH, Krinninger S, Nanongkai D. Sublinear-time maintenance of breadth-first spanning tree in partially dynamic networks. In: 40th International Colloquium on Automata, Languages, and Programming. Vol 7966. Springer Nature; 2013:607–619. doi:10.1007/978-3-642-39212-2_53' apa: 'Henzinger, M. H., Krinninger, S., & Nanongkai, D. (2013). Sublinear-time maintenance of breadth-first spanning tree in partially dynamic networks. In 40th International Colloquium on Automata, Languages, and Programming (Vol. 7966, pp. 607–619). Riga, Latvia: Springer Nature. https://doi.org/10.1007/978-3-642-39212-2_53' chicago: Henzinger, Monika H, Sebastian Krinninger, and Danupon Nanongkai. “Sublinear-Time Maintenance of Breadth-First Spanning Tree in Partially Dynamic Networks.” In 40th International Colloquium on Automata, Languages, and Programming, 7966:607–619. Springer Nature, 2013. https://doi.org/10.1007/978-3-642-39212-2_53. ieee: M. H. Henzinger, S. Krinninger, and D. Nanongkai, “Sublinear-time maintenance of breadth-first spanning tree in partially dynamic networks,” in 40th International Colloquium on Automata, Languages, and Programming, Riga, Latvia, 2013, vol. 7966, pp. 607–619. ista: 'Henzinger MH, Krinninger S, Nanongkai D. 2013. Sublinear-time maintenance of breadth-first spanning tree in partially dynamic networks. 40th International Colloquium on Automata, Languages, and Programming. ICALP: International Colloquium on Automata, Languages, and Programming, LNCS, vol. 7966, 607–619.' mla: Henzinger, Monika H., et al. “Sublinear-Time Maintenance of Breadth-First Spanning Tree in Partially Dynamic Networks.” 40th International Colloquium on Automata, Languages, and Programming, vol. 7966, Springer Nature, 2013, pp. 607–619, doi:10.1007/978-3-642-39212-2_53. short: M.H. Henzinger, S. Krinninger, D. Nanongkai, in:, 40th International Colloquium on Automata, Languages, and Programming, Springer Nature, 2013, pp. 607–619. conference: end_date: 2013-07-12 location: Riga, Latvia name: 'ICALP: International Colloquium on Automata, Languages, and Programming' start_date: 2013-07-08 date_created: 2022-08-11T11:25:13Z date_published: 2013-07-01T00:00:00Z date_updated: 2023-02-21T16:28:26Z day: '01' doi: 10.1007/978-3-642-39212-2_53 extern: '1' external_id: arxiv: - '1512.08147' intvolume: ' 7966' language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/1512.08147 month: '07' oa: 1 oa_version: Preprint page: 607–619 publication: 40th International Colloquium on Automata, Languages, and Programming publication_identifier: isbn: - '9783642392115' issn: - 1611-3349 publication_status: published publisher: Springer Nature quality_controlled: '1' related_material: record: - id: '11793' relation: later_version status: public scopus_import: '1' status: public title: Sublinear-time maintenance of breadth-first spanning tree in partially dynamic networks type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 7966 year: '2013' ... --- _id: '11791' abstract: - lang: eng text: The focus of classic mechanism design has been on truthful direct-revelation mechanisms. In the context of combinatorial auctions the truthful direct-revelation mechanism that maximizes social welfare is the VCG mechanism. For many valuation spaces computing the allocation and payments of the VCG mechanism, however, is a computationally hard problem. We thus study the performance of the VCG mechanism when bidders are forced to choose bids from a subspace of the valuation space for which the VCG outcome can be computed efficiently. We prove improved upper bounds on the welfare loss for restrictions to additive bids and upper and lower bounds for restrictions to non-additive bids. These bounds show that the welfare loss increases in expressiveness. All our bounds apply to equilibrium concepts that can be computed in polynomial time as well as to learning outcomes. alternative_title: - LNCS article_processing_charge: No author: - first_name: Paul full_name: Dütting, Paul last_name: Dütting - first_name: Monika H full_name: Henzinger, Monika H id: 540c9bbd-f2de-11ec-812d-d04a5be85630 last_name: Henzinger orcid: 0000-0002-5008-6530 - first_name: Martin full_name: Starnberger, Martin last_name: Starnberger citation: ama: 'Dütting P, Henzinger MH, Starnberger M. Valuation compressions in VCG-based combinatorial auctions. In: 9th International Conference on Web and Internet Economics. Vol 8289. Springer Nature; 2013:146–159. doi:10.1007/978-3-642-45046-4_13' apa: 'Dütting, P., Henzinger, M. H., & Starnberger, M. (2013). Valuation compressions in VCG-based combinatorial auctions. In 9th International Conference on Web and Internet Economics (Vol. 8289, pp. 146–159). Cambridge, MA, USA: Springer Nature. https://doi.org/10.1007/978-3-642-45046-4_13' chicago: Dütting, Paul, Monika H Henzinger, and Martin Starnberger. “Valuation Compressions in VCG-Based Combinatorial Auctions.” In 9th International Conference on Web and Internet Economics, 8289:146–159. Springer Nature, 2013. https://doi.org/10.1007/978-3-642-45046-4_13. ieee: P. Dütting, M. H. Henzinger, and M. Starnberger, “Valuation compressions in VCG-based combinatorial auctions,” in 9th International Conference on Web and Internet Economics, Cambridge, MA, USA, 2013, vol. 8289, pp. 146–159. ista: 'Dütting P, Henzinger MH, Starnberger M. 2013. Valuation compressions in VCG-based combinatorial auctions. 9th International Conference on Web and Internet Economics. WINE: International Conference on Web and Internet Economics, LNCS, vol. 8289, 146–159.' mla: Dütting, Paul, et al. “Valuation Compressions in VCG-Based Combinatorial Auctions.” 9th International Conference on Web and Internet Economics, vol. 8289, Springer Nature, 2013, pp. 146–159, doi:10.1007/978-3-642-45046-4_13. short: P. Dütting, M.H. Henzinger, M. Starnberger, in:, 9th International Conference on Web and Internet Economics, Springer Nature, 2013, pp. 146–159. conference: end_date: 2013-12-14 location: Cambridge, MA, USA name: 'WINE: International Conference on Web and Internet Economics' start_date: 2013-12-01 date_created: 2022-08-11T11:05:14Z date_published: 2013-12-01T00:00:00Z date_updated: 2023-02-13T11:20:42Z day: '01' doi: 10.1007/978-3-642-45046-4_13 extern: '1' external_id: arxiv: - '1310.3153' intvolume: ' 8289' language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/1310.3153 month: '12' oa: 1 oa_version: Preprint page: 146–159 publication: 9th International Conference on Web and Internet Economics publication_identifier: isbn: - '9783642450457' issn: - 1611-3349 publication_status: published publisher: Springer Nature quality_controlled: '1' scopus_import: '1' status: public title: Valuation compressions in VCG-based combinatorial auctions type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 8289 year: '2013' ... --- _id: '11792' abstract: - lang: eng text: "We study the problem of maximizing a monotone submodular function with viability constraints. This problem originates from computational biology, where we are given a phylogenetic tree over a set of species and a directed graph, the so-called food web, encoding viability constraints between these species. These food webs usually have constant depth. The goal is to select a subset of k species that satisfies the viability constraints and has maximal phylogenetic diversity. As this problem is known to be NP-hard, we investigate approximation algorithm. We present the first constant factor approximation algorithm if the depth is constant. Its approximation ratio is (1−1\U0001D452√). This algorithm not only applies to phylogenetic trees with viability constraints but for arbitrary monotone submodular set functions with viability constraints. Second, we show that there is no (1 − 1/e + ε)-approximation algorithm for our problem setting (even for additive functions) and that there is no approximation algorithm for a slight extension of this setting." alternative_title: - LNCS article_processing_charge: No author: - first_name: Wolfgang full_name: Dvořák, Wolfgang last_name: Dvořák - first_name: Monika H full_name: Henzinger, Monika H id: 540c9bbd-f2de-11ec-812d-d04a5be85630 last_name: Henzinger orcid: 0000-0002-5008-6530 - first_name: David P. full_name: Williamson, David P. last_name: Williamson citation: ama: 'Dvořák W, Henzinger MH, Williamson DP. Maximizing a submodular function with viability constraints. In: 21st Annual European Symposium on Algorithms. Vol 8125. Springer Nature; 2013:409-420. doi:10.1007/978-3-642-40450-4_35' apa: 'Dvořák, W., Henzinger, M. H., & Williamson, D. P. (2013). Maximizing a submodular function with viability constraints. In 21st Annual European Symposium on Algorithms (Vol. 8125, pp. 409–420). Sophia Antipolis, France: Springer Nature. https://doi.org/10.1007/978-3-642-40450-4_35' chicago: Dvořák, Wolfgang, Monika H Henzinger, and David P. Williamson. “Maximizing a Submodular Function with Viability Constraints.” In 21st Annual European Symposium on Algorithms, 8125:409–20. Springer Nature, 2013. https://doi.org/10.1007/978-3-642-40450-4_35. ieee: W. Dvořák, M. H. Henzinger, and D. P. Williamson, “Maximizing a submodular function with viability constraints,” in 21st Annual European Symposium on Algorithms, Sophia Antipolis, France, 2013, vol. 8125, pp. 409–420. ista: 'Dvořák W, Henzinger MH, Williamson DP. 2013. Maximizing a submodular function with viability constraints. 21st Annual European Symposium on Algorithms. ESA: European Symposium on Algorithms, LNCS, vol. 8125, 409–420.' mla: Dvořák, Wolfgang, et al. “Maximizing a Submodular Function with Viability Constraints.” 21st Annual European Symposium on Algorithms, vol. 8125, Springer Nature, 2013, pp. 409–20, doi:10.1007/978-3-642-40450-4_35. short: W. Dvořák, M.H. Henzinger, D.P. Williamson, in:, 21st Annual European Symposium on Algorithms, Springer Nature, 2013, pp. 409–420. conference: end_date: 2013-09-04 location: Sophia Antipolis, France name: 'ESA: European Symposium on Algorithms' start_date: 2013-09-02 date_created: 2022-08-11T11:18:19Z date_published: 2013-09-01T00:00:00Z date_updated: 2023-02-21T16:28:24Z day: '01' doi: 10.1007/978-3-642-40450-4_35 extern: '1' external_id: arxiv: - '1611.05753' intvolume: ' 8125' language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/1611.05753 month: '09' oa: 1 oa_version: Preprint page: 409 - 420 publication: 21st Annual European Symposium on Algorithms publication_identifier: isbn: - '9783642404498' issn: - 1611-3349 publication_status: published publisher: Springer Nature quality_controlled: '1' related_material: record: - id: '11792' relation: later_version status: public scopus_import: '1' status: public title: Maximizing a submodular function with viability constraints type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 8125 year: '2013' ... --- _id: '11856' abstract: - lang: eng text: 'We study dynamic (1 + ϵ)-approximation algorithms for the all-pairs shortest paths problem in unweighted undirected n-node m-edge graphs under edge deletions. The fastest algorithm for this problem is a randomized algorithm with a total update time of Ȏ(mn) and constant query time by Roditty and Zwick (FOCS 2004). The fastest deterministic algorithm is from a 1981 paper by Even and Shiloach (JACM 1981); it has a total update time of O(mn 2 ) and constant query time. We improve these results as follows: (1) We present an algorithm with a total update time of Ȏ(n 5/2 ) and constant query time that has an additive error of two in addition to the 1 + ϵ multiplicative error. This beats the previous Ȏ(mn) time when m = Ω(n 3/2 ). Note that the additive error is unavoidable since, even in the static case, an O(n 3-δ )-time (a so-called truly sub cubic) combinatorial algorithm with 1 + ϵ multiplicative error cannot have an additive error less than 2 - ϵ, unless we make a major breakthrough for Boolean matrix multiplication (Dor, Halperin and Zwick FOCS 1996) and many other long-standing problems (Vassilevska Williams and Williams FOCS 2010). The algorithm can also be turned into a (2 + ϵ)-approximation algorithm (without an additive error) with the same time guarantees, improving the recent (3 + ϵ)-approximation algorithm with Ȏ(n 5/2+O(1√(log n)) ) running time of Bernstein and Roditty (SODA 2011) in terms of both approximation and time guarantees. (2) We present a deterministic algorithm with a total update time of Ȏ(mn) and a query time of O(log log n). The algorithm has a multiplicative error of 1 + ϵ and gives the first improved deterministic algorithm since 1981. It also answers an open question raised by Bernstein in his STOC 2013 paper. In order to achieve our results, we introduce two new techniques: (1) A lazy Even-Shiloach tree algorithm which maintains a bounded-distance shortest-paths tree on a certain type of emulator called locally persevering emulator. (2) A derandomization technique based on moving Even-Shiloach trees as a way to derandomize the standard random set argument. These techniques might be of independent interest.' article_processing_charge: No author: - first_name: Monika H full_name: Henzinger, Monika H id: 540c9bbd-f2de-11ec-812d-d04a5be85630 last_name: Henzinger orcid: 0000-0002-5008-6530 - first_name: Sebastian full_name: Krinninger, Sebastian last_name: Krinninger - first_name: Danupon full_name: Nanongkai, Danupon last_name: Nanongkai citation: ama: 'Henzinger MH, Krinninger S, Nanongkai D. Dynamic approximate all-pairs shortest paths: Breaking the O(mn) barrier and derandomization. In: 54th Annual Symposium on Foundations of Computer Science. Institute of Electrical and Electronics Engineers; 2013:538-547. doi:10.1109/focs.2013.64' apa: 'Henzinger, M. H., Krinninger, S., & Nanongkai, D. (2013). Dynamic approximate all-pairs shortest paths: Breaking the O(mn) barrier and derandomization. In 54th Annual Symposium on Foundations of Computer Science (pp. 538–547). Berkeley, CA, United States: Institute of Electrical and Electronics Engineers. https://doi.org/10.1109/focs.2013.64' chicago: 'Henzinger, Monika H, Sebastian Krinninger, and Danupon Nanongkai. “Dynamic Approximate All-Pairs Shortest Paths: Breaking the O(Mn) Barrier and Derandomization.” In 54th Annual Symposium on Foundations of Computer Science, 538–47. Institute of Electrical and Electronics Engineers, 2013. https://doi.org/10.1109/focs.2013.64.' ieee: 'M. H. Henzinger, S. Krinninger, and D. Nanongkai, “Dynamic approximate all-pairs shortest paths: Breaking the O(mn) barrier and derandomization,” in 54th Annual Symposium on Foundations of Computer Science, Berkeley, CA, United States, 2013, pp. 538–547.' ista: 'Henzinger MH, Krinninger S, Nanongkai D. 2013. Dynamic approximate all-pairs shortest paths: Breaking the O(mn) barrier and derandomization. 54th Annual Symposium on Foundations of Computer Science. FOCS: Symposium on Foundations of Computer Science, 538–547.' mla: 'Henzinger, Monika H., et al. “Dynamic Approximate All-Pairs Shortest Paths: Breaking the O(Mn) Barrier and Derandomization.” 54th Annual Symposium on Foundations of Computer Science, Institute of Electrical and Electronics Engineers, 2013, pp. 538–47, doi:10.1109/focs.2013.64.' short: M.H. Henzinger, S. Krinninger, D. Nanongkai, in:, 54th Annual Symposium on Foundations of Computer Science, Institute of Electrical and Electronics Engineers, 2013, pp. 538–547. conference: end_date: 2013-10-29 location: Berkeley, CA, United States name: 'FOCS: Symposium on Foundations of Computer Science' start_date: 2013-10-26 date_created: 2022-08-16T08:22:37Z date_published: 2013-10-01T00:00:00Z date_updated: 2023-02-17T09:56:04Z day: '01' doi: 10.1109/focs.2013.64 extern: '1' external_id: arxiv: - '1308.0776' language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/1308.0776 month: '10' oa: 1 oa_version: Preprint page: 538-547 publication: 54th Annual Symposium on Foundations of Computer Science publication_identifier: eisbn: - 978-0-7695-5135-7 issn: - 0272-5428 publication_status: published publisher: Institute of Electrical and Electronics Engineers quality_controlled: '1' scopus_import: '1' status: public title: 'Dynamic approximate all-pairs shortest paths: Breaking the O(mn) barrier and derandomization' type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2013' ... --- _id: '11902' abstract: - lang: eng text: "We study the problem of matching bidders to items where each bidder i has general, strictly monotonic utility functions ui,j(pj) expressing his utility of being matched to item j at price pj. For this setting we prove that a bidder optimal outcome always exists, even when the utility functions are non-linear and non-continuous. We give sufficient conditions under\r\nwhich every mechanism that finds a bidder optimal outcome is incentive compatible. We also give a mechanism that finds a bidder optimal outcome if the conditions for incentive compatibility are satisfied. The running time of this mechanism is exponential in the number of items, but polynomial in the number of bidders." article_processing_charge: No article_type: original author: - first_name: Paul full_name: Dütting, Paul last_name: Dütting - first_name: Monika H full_name: Henzinger, Monika H id: 540c9bbd-f2de-11ec-812d-d04a5be85630 last_name: Henzinger orcid: 0000-0002-5008-6530 - first_name: Ingmar full_name: Weber, Ingmar last_name: Weber citation: ama: Dütting P, Henzinger MH, Weber I. Bidder optimal assignments for general utilities. Theoretical Computer Science. 2013;478(3):22-32. doi:10.1016/j.tcs.2013.01.030 apa: Dütting, P., Henzinger, M. H., & Weber, I. (2013). Bidder optimal assignments for general utilities. Theoretical Computer Science. Elsevier. https://doi.org/10.1016/j.tcs.2013.01.030 chicago: Dütting, Paul, Monika H Henzinger, and Ingmar Weber. “Bidder Optimal Assignments for General Utilities.” Theoretical Computer Science. Elsevier, 2013. https://doi.org/10.1016/j.tcs.2013.01.030. ieee: P. Dütting, M. H. Henzinger, and I. Weber, “Bidder optimal assignments for general utilities,” Theoretical Computer Science, vol. 478, no. 3. Elsevier, pp. 22–32, 2013. ista: Dütting P, Henzinger MH, Weber I. 2013. Bidder optimal assignments for general utilities. Theoretical Computer Science. 478(3), 22–32. mla: Dütting, Paul, et al. “Bidder Optimal Assignments for General Utilities.” Theoretical Computer Science, vol. 478, no. 3, Elsevier, 2013, pp. 22–32, doi:10.1016/j.tcs.2013.01.030. short: P. Dütting, M.H. Henzinger, I. Weber, Theoretical Computer Science 478 (2013) 22–32. date_created: 2022-08-17T11:11:04Z date_published: 2013-03-25T00:00:00Z date_updated: 2023-02-21T16:28:41Z day: '25' doi: 10.1016/j.tcs.2013.01.030 extern: '1' intvolume: ' 478' issue: '3' language: - iso: eng month: '03' oa_version: None page: 22-32 publication: Theoretical Computer Science publication_identifier: issn: - 0304-3975 publication_status: published publisher: Elsevier quality_controlled: '1' related_material: record: - id: '11799' relation: earlier_version status: public scopus_import: '1' status: public title: Bidder optimal assignments for general utilities type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 478 year: '2013' ... --- _id: '11959' abstract: - lang: eng text: No catalyst required! A highly efficient, catalyst-free process to generate diimide in situ from hydrazine monohydrate and molecular oxygen for the selective reduction of alkenes has been developed. The use of a gas–liquid segmented flow system allowed safe operating conditions and dramatically enhanced this atom-economical reaction, resulting in short processing times. article_processing_charge: No article_type: letter_note author: - first_name: Bartholomäus full_name: Pieber, Bartholomäus id: 93e5e5b2-0da6-11ed-8a41-af589a024726 last_name: Pieber orcid: 0000-0001-8689-388X - first_name: Sabrina Teixeira full_name: Martinez, Sabrina Teixeira last_name: Martinez - first_name: David full_name: Cantillo, David last_name: Cantillo - first_name: C. Oliver full_name: Kappe, C. Oliver last_name: Kappe citation: ama: 'Pieber B, Martinez ST, Cantillo D, Kappe CO. In situ generation of diimide from hydrazine and oxygen: Continuous-flow transfer hydrogenation of olefins. Angewandte Chemie International Edition. 2013;52(39):10241-10244. doi:10.1002/anie.201303528' apa: 'Pieber, B., Martinez, S. T., Cantillo, D., & Kappe, C. O. (2013). In situ generation of diimide from hydrazine and oxygen: Continuous-flow transfer hydrogenation of olefins. Angewandte Chemie International Edition. Wiley. https://doi.org/10.1002/anie.201303528' chicago: 'Pieber, Bartholomäus, Sabrina Teixeira Martinez, David Cantillo, and C. Oliver Kappe. “In Situ Generation of Diimide from Hydrazine and Oxygen: Continuous-Flow Transfer Hydrogenation of Olefins.” Angewandte Chemie International Edition. Wiley, 2013. https://doi.org/10.1002/anie.201303528.' ieee: 'B. Pieber, S. T. Martinez, D. Cantillo, and C. O. Kappe, “In situ generation of diimide from hydrazine and oxygen: Continuous-flow transfer hydrogenation of olefins,” Angewandte Chemie International Edition, vol. 52, no. 39. Wiley, pp. 10241–10244, 2013.' ista: 'Pieber B, Martinez ST, Cantillo D, Kappe CO. 2013. In situ generation of diimide from hydrazine and oxygen: Continuous-flow transfer hydrogenation of olefins. Angewandte Chemie International Edition. 52(39), 10241–10244.' mla: 'Pieber, Bartholomäus, et al. “In Situ Generation of Diimide from Hydrazine and Oxygen: Continuous-Flow Transfer Hydrogenation of Olefins.” Angewandte Chemie International Edition, vol. 52, no. 39, Wiley, 2013, pp. 10241–44, doi:10.1002/anie.201303528.' short: B. Pieber, S.T. Martinez, D. Cantillo, C.O. Kappe, Angewandte Chemie International Edition 52 (2013) 10241–10244. date_created: 2022-08-24T11:01:47Z date_published: 2013-09-23T00:00:00Z date_updated: 2023-02-21T10:09:21Z day: '23' doi: 10.1002/anie.201303528 extern: '1' intvolume: ' 52' issue: '39' language: - iso: eng month: '09' oa_version: None page: 10241-10244 publication: Angewandte Chemie International Edition publication_identifier: eissn: - 1521-3773 issn: - 1433-7851 publication_status: published publisher: Wiley quality_controlled: '1' scopus_import: '1' status: public title: 'In situ generation of diimide from hydrazine and oxygen: Continuous-flow transfer hydrogenation of olefins' type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 52 year: '2013' ... --- _id: '11960' abstract: - lang: eng text: It's not magic! The effects observed in microwave-irradiated chemical transformations can in most cases be rationalized by purely bulk thermal phenomena associated with rapid heating to elevated temperatures. As discussed in this Essay, the existence of so-called nonthermal or specific microwave effects is highly doubtful. article_processing_charge: No article_type: letter_note author: - first_name: C. Oliver full_name: Kappe, C. Oliver last_name: Kappe - first_name: Bartholomäus full_name: Pieber, Bartholomäus id: 93e5e5b2-0da6-11ed-8a41-af589a024726 last_name: Pieber orcid: 0000-0001-8689-388X - first_name: Doris full_name: Dallinger, Doris last_name: Dallinger citation: ama: 'Kappe CO, Pieber B, Dallinger D. Microwave effects in organic synthesis: Myth or reality? Angewandte Chemie International Edition. 2013;52(4):1088-1094. doi:10.1002/anie.201204103' apa: 'Kappe, C. O., Pieber, B., & Dallinger, D. (2013). Microwave effects in organic synthesis: Myth or reality? Angewandte Chemie International Edition. Wiley. https://doi.org/10.1002/anie.201204103' chicago: 'Kappe, C. Oliver, Bartholomäus Pieber, and Doris Dallinger. “Microwave Effects in Organic Synthesis: Myth or Reality?” Angewandte Chemie International Edition. Wiley, 2013. https://doi.org/10.1002/anie.201204103.' ieee: 'C. O. Kappe, B. Pieber, and D. Dallinger, “Microwave effects in organic synthesis: Myth or reality?,” Angewandte Chemie International Edition, vol. 52, no. 4. Wiley, pp. 1088–1094, 2013.' ista: 'Kappe CO, Pieber B, Dallinger D. 2013. Microwave effects in organic synthesis: Myth or reality? Angewandte Chemie International Edition. 52(4), 1088–1094.' mla: 'Kappe, C. Oliver, et al. “Microwave Effects in Organic Synthesis: Myth or Reality?” Angewandte Chemie International Edition, vol. 52, no. 4, Wiley, 2013, pp. 1088–94, doi:10.1002/anie.201204103.' short: C.O. Kappe, B. Pieber, D. Dallinger, Angewandte Chemie International Edition 52 (2013) 1088–1094. date_created: 2022-08-24T11:05:04Z date_published: 2013-01-21T00:00:00Z date_updated: 2023-02-21T10:09:26Z day: '21' doi: 10.1002/anie.201204103 extern: '1' intvolume: ' 52' issue: '4' language: - iso: eng month: '01' oa_version: None page: 1088-1094 publication: Angewandte Chemie International Edition publication_identifier: eissn: - 1521-3773 issn: - 1433-7851 publication_status: published publisher: Wiley quality_controlled: '1' scopus_import: '1' status: public title: 'Microwave effects in organic synthesis: Myth or reality?' type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 52 year: '2013' ... --- _id: '11973' abstract: - lang: eng text: The use of high-temperature/pressure gas–liquid continuous flow conditions dramatically enhances the iron-catalyzed aerobic oxidation of 2-benzylpyridines to their corresponding ketones. Pressurized air serves as a readily available oxygen source and propylene carbonate as a green solvent in this radically intensified preparation of synthetically valuable 2-aroylpyridines. article_processing_charge: No article_type: letter_note author: - first_name: Bartholomäus full_name: Pieber, Bartholomäus id: 93e5e5b2-0da6-11ed-8a41-af589a024726 last_name: Pieber orcid: 0000-0001-8689-388X - first_name: C. Oliver full_name: Kappe, C. Oliver last_name: Kappe citation: ama: Pieber B, Kappe CO. Direct aerobic oxidation of 2-benzylpyridines in a gas-liquid continuous-flow regime using propylene carbonate as a solvent. Green Chemistry. 2013;15(2):320-324. doi:10.1039/c2gc36896j apa: Pieber, B., & Kappe, C. O. (2013). Direct aerobic oxidation of 2-benzylpyridines in a gas-liquid continuous-flow regime using propylene carbonate as a solvent. Green Chemistry. Royal Society of Chemistry. https://doi.org/10.1039/c2gc36896j chicago: Pieber, Bartholomäus, and C. Oliver Kappe. “Direct Aerobic Oxidation of 2-Benzylpyridines in a Gas-Liquid Continuous-Flow Regime Using Propylene Carbonate as a Solvent.” Green Chemistry. Royal Society of Chemistry, 2013. https://doi.org/10.1039/c2gc36896j. ieee: B. Pieber and C. O. Kappe, “Direct aerobic oxidation of 2-benzylpyridines in a gas-liquid continuous-flow regime using propylene carbonate as a solvent,” Green Chemistry, vol. 15, no. 2. Royal Society of Chemistry, pp. 320–324, 2013. ista: Pieber B, Kappe CO. 2013. Direct aerobic oxidation of 2-benzylpyridines in a gas-liquid continuous-flow regime using propylene carbonate as a solvent. Green Chemistry. 15(2), 320–324. mla: Pieber, Bartholomäus, and C. Oliver Kappe. “Direct Aerobic Oxidation of 2-Benzylpyridines in a Gas-Liquid Continuous-Flow Regime Using Propylene Carbonate as a Solvent.” Green Chemistry, vol. 15, no. 2, Royal Society of Chemistry, 2013, pp. 320–24, doi:10.1039/c2gc36896j. short: B. Pieber, C.O. Kappe, Green Chemistry 15 (2013) 320–324. date_created: 2022-08-25T10:29:21Z date_published: 2013-02-01T00:00:00Z date_updated: 2023-02-21T10:09:54Z day: '01' doi: 10.1039/c2gc36896j extern: '1' intvolume: ' 15' issue: '2' language: - iso: eng month: '02' oa_version: None page: 320-324 publication: Green Chemistry publication_identifier: eissn: - 1463-9270 issn: - 1463-9262 publication_status: published publisher: Royal Society of Chemistry quality_controlled: '1' scopus_import: '1' status: public title: Direct aerobic oxidation of 2-benzylpyridines in a gas-liquid continuous-flow regime using propylene carbonate as a solvent type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 15 year: '2013' ... --- _id: '12642' abstract: - lang: eng text: Near-surface air temperature, typically measured at a height of 2 m, is the most important control on the energy exchange and the melt rate at a snow or ice surface. It is distributed in a simplistic manner in most glacier melt models by using constant linear lapse rates, which poorly represent the actual spatial and temporal variability of air temperature. In this paper, we test a simple thermodynamic model proposed by Greuell and Böhm in 1998 as an alternative, using a new dataset of air temperature measurements from along the flowline of Haut Glacier d’Arolla, Switzerland. The unmodified model performs little better than assuming a constant linear lapse rate. When modified to allow the ratio of the boundary layer height to the bulk heat transfer coefficient to vary along the flowline, the model matches measured air temperatures better, and a further reduction of the root-mean-square error is obtained, although there is still considerable scope for improvement. The modified model is shown to perform best under conditions favourable to the development of katabatic winds – few clouds, positive ambient air temperature, limited influence of synoptic or valley winds and a long fetch – but its performance is poor under cloudy conditions. article_processing_charge: No article_type: original author: - first_name: Lene full_name: Petersen, Lene last_name: Petersen - first_name: Francesca full_name: Pellicciotti, Francesca id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70 last_name: Pellicciotti - first_name: Inge full_name: Juszak, Inge last_name: Juszak - first_name: Marco full_name: Carenzo, Marco last_name: Carenzo - first_name: Ben full_name: Brock, Ben last_name: Brock citation: ama: 'Petersen L, Pellicciotti F, Juszak I, Carenzo M, Brock B. Suitability of a constant air temperature lapse rate over an Alpine glacier: Testing the Greuell and Böhm model as an alternative. Annals of Glaciology. 2013;54(63):120-130. doi:10.3189/2013aog63a477' apa: 'Petersen, L., Pellicciotti, F., Juszak, I., Carenzo, M., & Brock, B. (2013). Suitability of a constant air temperature lapse rate over an Alpine glacier: Testing the Greuell and Böhm model as an alternative. Annals of Glaciology. International Glaciological Society. https://doi.org/10.3189/2013aog63a477' chicago: 'Petersen, Lene, Francesca Pellicciotti, Inge Juszak, Marco Carenzo, and Ben Brock. “Suitability of a Constant Air Temperature Lapse Rate over an Alpine Glacier: Testing the Greuell and Böhm Model as an Alternative.” Annals of Glaciology. International Glaciological Society, 2013. https://doi.org/10.3189/2013aog63a477.' ieee: 'L. Petersen, F. Pellicciotti, I. Juszak, M. Carenzo, and B. Brock, “Suitability of a constant air temperature lapse rate over an Alpine glacier: Testing the Greuell and Böhm model as an alternative,” Annals of Glaciology, vol. 54, no. 63. International Glaciological Society, pp. 120–130, 2013.' ista: 'Petersen L, Pellicciotti F, Juszak I, Carenzo M, Brock B. 2013. Suitability of a constant air temperature lapse rate over an Alpine glacier: Testing the Greuell and Böhm model as an alternative. Annals of Glaciology. 54(63), 120–130.' mla: 'Petersen, Lene, et al. “Suitability of a Constant Air Temperature Lapse Rate over an Alpine Glacier: Testing the Greuell and Böhm Model as an Alternative.” Annals of Glaciology, vol. 54, no. 63, International Glaciological Society, 2013, pp. 120–30, doi:10.3189/2013aog63a477.' short: L. Petersen, F. Pellicciotti, I. Juszak, M. Carenzo, B. Brock, Annals of Glaciology 54 (2013) 120–130. date_created: 2023-02-20T08:17:29Z date_published: 2013-08-01T00:00:00Z date_updated: 2023-02-21T10:18:24Z day: '01' doi: 10.3189/2013aog63a477 extern: '1' intvolume: ' 54' issue: '63' keyword: - Earth-Surface Processes language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.3189/2013aog63a477 month: '08' oa: 1 oa_version: Published Version page: 120-130 publication: Annals of Glaciology publication_identifier: eissn: - 1727-5644 issn: - 0260-3055 publication_status: published publisher: International Glaciological Society quality_controlled: '1' scopus_import: '1' status: public title: 'Suitability of a constant air temperature lapse rate over an Alpine glacier: Testing the Greuell and Böhm model as an alternative' type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 54 year: '2013' ... --- _id: '12643' abstract: - lang: eng text: Parameterizations of incoming longwave radiation are increasingly receiving attention for both low and high elevation glacierized sites. In this paper, we test 13 clear-sky parameterizations combined with seven cloud corrections for all-sky atmospheric emissivity at one location on Haut Glacier d'Arolla. We also analyze the four seasons separately and conduct a cross-validation to test the parameters’ robustness. The best parameterization is the one by Dilley and O'Brien, B for clear-sky conditions combined with Unsworth and Monteith cloud correction. This model is also the most robust when tested in cross-validation. When validated at different sites in the southern Alps of Switzerland and north-western Italian Alps, all parameterizations show a substantial decrease in performance, except for one site, thus suggesting that it is important to recalibrate parameterizations of incoming longwave radiation for different locations. We argue that this is due to differences in the structure of the atmosphere at the sites. We also quantify the effect that the incoming longwave radiation parameterizations have on energy-balance melt modeling, and show that recalibration of model parameters is needed. Using parameters from other sites leads to a significant underestimation of melt and to an error that is larger than that associated with using different parameterizations. Once recalibrated, however, the parameters of most models seem to be stable over seasons and years at the location on Haut Glacier d'Arolla. article_processing_charge: No article_type: original author: - first_name: I. full_name: Juszak, I. last_name: Juszak - first_name: Francesca full_name: Pellicciotti, Francesca id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70 last_name: Pellicciotti citation: ama: 'Juszak I, Pellicciotti F. A comparison of parameterizations of incoming longwave radiation over melting glaciers: Model robustness and seasonal variability. Journal of Geophysical Research: Atmospheres. 2013;118(8):3066-3084. doi:10.1002/jgrd.50277' apa: 'Juszak, I., & Pellicciotti, F. (2013). A comparison of parameterizations of incoming longwave radiation over melting glaciers: Model robustness and seasonal variability. Journal of Geophysical Research: Atmospheres. American Geophysical Union. https://doi.org/10.1002/jgrd.50277' chicago: 'Juszak, I., and Francesca Pellicciotti. “A Comparison of Parameterizations of Incoming Longwave Radiation over Melting Glaciers: Model Robustness and Seasonal Variability.” Journal of Geophysical Research: Atmospheres. American Geophysical Union, 2013. https://doi.org/10.1002/jgrd.50277.' ieee: 'I. Juszak and F. Pellicciotti, “A comparison of parameterizations of incoming longwave radiation over melting glaciers: Model robustness and seasonal variability,” Journal of Geophysical Research: Atmospheres, vol. 118, no. 8. American Geophysical Union, pp. 3066–3084, 2013.' ista: 'Juszak I, Pellicciotti F. 2013. A comparison of parameterizations of incoming longwave radiation over melting glaciers: Model robustness and seasonal variability. Journal of Geophysical Research: Atmospheres. 118(8), 3066–3084.' mla: 'Juszak, I., and Francesca Pellicciotti. “A Comparison of Parameterizations of Incoming Longwave Radiation over Melting Glaciers: Model Robustness and Seasonal Variability.” Journal of Geophysical Research: Atmospheres, vol. 118, no. 8, American Geophysical Union, 2013, pp. 3066–84, doi:10.1002/jgrd.50277.' short: 'I. Juszak, F. Pellicciotti, Journal of Geophysical Research: Atmospheres 118 (2013) 3066–3084.' date_created: 2023-02-20T08:17:34Z date_published: 2013-04-27T00:00:00Z date_updated: 2023-02-21T10:10:46Z day: '27' doi: 10.1002/jgrd.50277 extern: '1' intvolume: ' 118' issue: '8' keyword: - Space and Planetary Science - Earth and Planetary Sciences (miscellaneous) - Atmospheric Science - Geophysics language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1002/jgrd.50277 month: '04' oa: 1 oa_version: Published Version page: 3066-3084 publication: 'Journal of Geophysical Research: Atmospheres' publication_identifier: issn: - 2169-897X publication_status: published publisher: American Geophysical Union quality_controlled: '1' scopus_import: '1' status: public title: 'A comparison of parameterizations of incoming longwave radiation over melting glaciers: Model robustness and seasonal variability' type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 118 year: '2013' ... --- _id: '12640' abstract: - lang: eng text: Greater Himalayan glaciers are retreating and losing mass at rates comparable to glaciers in other regions of the world1,2,3,4,5. Assessments of future changes and their associated hydrological impacts are scarce, oversimplify glacier dynamics or include a limited number of climate models6,7,8,9. Here, we use results from the latest ensemble of climate models in combination with a high-resolution glacio-hydrological model to assess the hydrological impact of climate change on two climatically contrasting watersheds in the Greater Himalaya, the Baltoro and Langtang watersheds that drain into the Indus and Ganges rivers, respectively. We show that the largest uncertainty in future runoff is a result of variations in projected precipitation between climate models. In both watersheds, strong, but highly variable, increases in future runoff are projected and, despite the different characteristics of the watersheds, their responses are surprisingly similar. In both cases, glaciers will recede but net glacier melt runoff is on a rising limb at least until 2050. In combination with a positive change in precipitation, water availability during this century is not likely to decline. We conclude that river basins that depend on monsoon rains and glacier melt will continue to sustain the increasing water demands expected in these areas10. article_processing_charge: No article_type: letter_note author: - first_name: W. W. full_name: Immerzeel, W. W. last_name: Immerzeel - first_name: Francesca full_name: Pellicciotti, Francesca id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70 last_name: Pellicciotti - first_name: M. F. P. full_name: Bierkens, M. F. P. last_name: Bierkens citation: ama: Immerzeel WW, Pellicciotti F, Bierkens MFP. Rising river flows throughout the twenty-first century in two Himalayan glacierized watersheds. Nature Geoscience. 2013;6(9):742-745. doi:10.1038/ngeo1896 apa: Immerzeel, W. W., Pellicciotti, F., & Bierkens, M. F. P. (2013). Rising river flows throughout the twenty-first century in two Himalayan glacierized watersheds. Nature Geoscience. Springer Nature. https://doi.org/10.1038/ngeo1896 chicago: Immerzeel, W. W., Francesca Pellicciotti, and M. F. P. Bierkens. “Rising River Flows throughout the Twenty-First Century in Two Himalayan Glacierized Watersheds.” Nature Geoscience. Springer Nature, 2013. https://doi.org/10.1038/ngeo1896. ieee: W. W. Immerzeel, F. Pellicciotti, and M. F. P. Bierkens, “Rising river flows throughout the twenty-first century in two Himalayan glacierized watersheds,” Nature Geoscience, vol. 6, no. 9. Springer Nature, pp. 742–745, 2013. ista: Immerzeel WW, Pellicciotti F, Bierkens MFP. 2013. Rising river flows throughout the twenty-first century in two Himalayan glacierized watersheds. Nature Geoscience. 6(9), 742–745. mla: Immerzeel, W. W., et al. “Rising River Flows throughout the Twenty-First Century in Two Himalayan Glacierized Watersheds.” Nature Geoscience, vol. 6, no. 9, Springer Nature, 2013, pp. 742–45, doi:10.1038/ngeo1896. short: W.W. Immerzeel, F. Pellicciotti, M.F.P. Bierkens, Nature Geoscience 6 (2013) 742–745. date_created: 2023-02-20T08:17:17Z date_published: 2013-09-13T00:00:00Z date_updated: 2023-02-21T10:46:37Z day: '13' doi: 10.1038/ngeo1896 extern: '1' intvolume: ' 6' issue: '9' keyword: - General Earth and Planetary Sciences language: - iso: eng month: '09' oa_version: None page: 742-745 publication: Nature Geoscience publication_identifier: eissn: - 1752-0908 issn: - 1752-0894 publication_status: published publisher: Springer Nature quality_controlled: '1' scopus_import: '1' status: public title: Rising river flows throughout the twenty-first century in two Himalayan glacierized watersheds type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 6 year: '2013' ... --- _id: '12641' abstract: - lang: eng text: We investigate the sensitivity of a distributed enhanced temperature-index (ETI) melt model, in order to understand which parameters have the largest influence on model outputs and thus need to be accurately known. We use melt and meteorological data from two Alpine glaciers and one glacier in the Andes of Chile. Sensitivity analysis is conducted in a systematic way in terms of parameters and the different conditions (day, night, clear-sky, overcast), melt seasons and glaciers examined. The sensitivity of total melt to changes in individual parameters is calculated using a local method around the optimal value of the parameters. We verify that the parameters are optimal at the distributed scale and assess the model uncertainty induced by uncertainty in the parameters using a Monte Carlo technique. Model sensitivity to parameters is consistent across melt seasons, glaciers, different conditions and the daily statistics examined. The parameters to which the model is most sensitive are the shortwave-radiation factor, the temperature lapse rate for extrapolation of air temperature, the albedo parameters, the temperature threshold and the cloud transmittance factor parameters. A parameter uncertainty of 5% results in a model uncertainty of 5.6% of mean melt on Haut Glacier d’Arolla, Switzerland. article_processing_charge: No article_type: original author: - first_name: Martin full_name: Heynen, Martin last_name: Heynen - first_name: Francesca full_name: Pellicciotti, Francesca id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70 last_name: Pellicciotti - first_name: Marco full_name: Carenzo, Marco last_name: Carenzo citation: ama: Heynen M, Pellicciotti F, Carenzo M. Parameter sensitivity of a distributed enhanced temperature-index melt model. Annals of Glaciology. 2013;54(63):311-321. doi:10.3189/2013aog63a537 apa: Heynen, M., Pellicciotti, F., & Carenzo, M. (2013). Parameter sensitivity of a distributed enhanced temperature-index melt model. Annals of Glaciology. International Glaciological Society. https://doi.org/10.3189/2013aog63a537 chicago: Heynen, Martin, Francesca Pellicciotti, and Marco Carenzo. “Parameter Sensitivity of a Distributed Enhanced Temperature-Index Melt Model.” Annals of Glaciology. International Glaciological Society, 2013. https://doi.org/10.3189/2013aog63a537. ieee: M. Heynen, F. Pellicciotti, and M. Carenzo, “Parameter sensitivity of a distributed enhanced temperature-index melt model,” Annals of Glaciology, vol. 54, no. 63. International Glaciological Society, pp. 311–321, 2013. ista: Heynen M, Pellicciotti F, Carenzo M. 2013. Parameter sensitivity of a distributed enhanced temperature-index melt model. Annals of Glaciology. 54(63), 311–321. mla: Heynen, Martin, et al. “Parameter Sensitivity of a Distributed Enhanced Temperature-Index Melt Model.” Annals of Glaciology, vol. 54, no. 63, International Glaciological Society, 2013, pp. 311–21, doi:10.3189/2013aog63a537. short: M. Heynen, F. Pellicciotti, M. Carenzo, Annals of Glaciology 54 (2013) 311–321. date_created: 2023-02-20T08:17:21Z date_published: 2013-08-01T00:00:00Z date_updated: 2023-02-21T10:43:42Z day: '01' doi: 10.3189/2013aog63a537 extern: '1' intvolume: ' 54' issue: '63' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.3189/2013aog63a537 month: '08' oa: 1 oa_version: Published Version page: 311-321 publication: Annals of Glaciology publication_identifier: eissn: - 1727-5644 issn: - 0260-3055 publication_status: published publisher: International Glaciological Society quality_controlled: '1' scopus_import: '1' status: public title: Parameter sensitivity of a distributed enhanced temperature-index melt model type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 54 year: '2013' ... --- _id: '1304' abstract: - lang: eng text: When confronted with a large-field stimulus rotating around the vertical body axis, flies display a following behavior called "optomotor response." As neural control elements, the large tangential horizontal system (HS) cells of the lobula plate have been prime candidates for long. Here, we applied optogenetic stimulation of HS cells to evaluate their behavioral role in Drosophila. To minimize interference of the optical activation of channelrhodopsin-2 with the visual perception of the flies, we used a bistable variant called ChR2-C128S. By applying pulses of blue and yellow light, we first demonstrate electrophysiologically that lobula plate tangential cells can be activated and deactivated repeatedly with no evident change in depolarization strength over trials. We next show that selective optogenetic activation of HS cells elicits robust yaw head movements and yaw turning responses in fixed and tethered flying flies, respectively. acknowledgement: 'This work was supported by the Max Planck Society. ' author: - first_name: Väinö full_name: Haikala, Väinö last_name: Haikala - first_name: Maximilian A full_name: Maximilian Jösch id: 2BD278E6-F248-11E8-B48F-1D18A9856A87 last_name: Jösch orcid: 0000-0002-3937-1330 - first_name: Alexander full_name: Borst, Alexander last_name: Borst - first_name: Alex full_name: Mauss, Alex S last_name: Mauss citation: ama: Haikala V, Jösch MA, Borst A, Mauss A. Optogenetic control of fly optomotor responses. Journal of Neuroscience. 2013;33(34):13927-13934. doi:10.1523/JNEUROSCI.0340-13.2013 apa: Haikala, V., Jösch, M. A., Borst, A., & Mauss, A. (2013). Optogenetic control of fly optomotor responses. Journal of Neuroscience. Society for Neuroscience. https://doi.org/10.1523/JNEUROSCI.0340-13.2013 chicago: Haikala, Väinö, Maximilian A Jösch, Alexander Borst, and Alex Mauss. “Optogenetic Control of Fly Optomotor Responses.” Journal of Neuroscience. Society for Neuroscience, 2013. https://doi.org/10.1523/JNEUROSCI.0340-13.2013. ieee: V. Haikala, M. A. Jösch, A. Borst, and A. Mauss, “Optogenetic control of fly optomotor responses,” Journal of Neuroscience, vol. 33, no. 34. Society for Neuroscience, pp. 13927–13934, 2013. ista: Haikala V, Jösch MA, Borst A, Mauss A. 2013. Optogenetic control of fly optomotor responses. Journal of Neuroscience. 33(34), 13927–13934. mla: Haikala, Väinö, et al. “Optogenetic Control of Fly Optomotor Responses.” Journal of Neuroscience, vol. 33, no. 34, Society for Neuroscience, 2013, pp. 13927–34, doi:10.1523/JNEUROSCI.0340-13.2013. short: V. Haikala, M.A. Jösch, A. Borst, A. Mauss, Journal of Neuroscience 33 (2013) 13927–13934. date_created: 2018-12-11T11:51:16Z date_published: 2013-01-01T00:00:00Z date_updated: 2021-01-12T06:49:45Z day: '01' doi: 10.1523/JNEUROSCI.0340-13.2013 extern: 1 intvolume: ' 33' issue: '34' month: '01' page: 13927 - 13934 publication: Journal of Neuroscience publication_status: published publisher: Society for Neuroscience publist_id: '5967' quality_controlled: 0 status: public title: Optogenetic control of fly optomotor responses type: journal_article volume: 33 year: '2013' ... --- _id: '1305' abstract: - lang: eng text: In the fly Drosophila melanogaster, photoreceptor input to motion vision is split into two parallel pathways as represented by first-order interneurons L1 and L2 (Rister et al., 2007; Joesch et al., 2010). However, how these pathways are functionally specialized remains controversial. One study (Eichner et al., 2011) proposed that the L1-pathway evaluates only sequences of brightness increments (ON-ON), while the L2-pathway processes exclusively brightness decrements (OFF-OFF). Another study (Clark et al., 2011) proposed that each of the two pathways evaluates both ON-ON and OFF-OFF sequences. To decide between these alternatives, we recorded from motionsensitive neurons in flies in which the output from either L1 or L2 was genetically blocked. We found that blocking L1 abolishes ON-ON responses but leaves OFF-OFF responses intact. The opposite was true, when the output from L2 was blocked. We conclude that the L1 and L2 pathways are functionally specialized to detect ON-ON and OFF-OFF sequences, respectively. acknowledgement: This work was supported by the Max-Planck-Society and the SFB 870 of the Deutsche Forschungsgemeinschaft. author: - first_name: Maximilian A full_name: Maximilian Jösch id: 2BD278E6-F248-11E8-B48F-1D18A9856A87 last_name: Jösch orcid: 0000-0002-3937-1330 - first_name: Franz full_name: Weber, Franz last_name: Weber - first_name: Hubert full_name: Eichner, Hubert last_name: Eichner - first_name: Alexander full_name: Borst, Alexander last_name: Borst citation: ama: Jösch MA, Weber F, Eichner H, Borst A. Functional specialization of parallel motion detection circuits in the fly. Journal of Neuroscience. 2013;33(3):902-905. doi:10.1523/JNEUROSCI.3374-12.2013 apa: Jösch, M. A., Weber, F., Eichner, H., & Borst, A. (2013). Functional specialization of parallel motion detection circuits in the fly. Journal of Neuroscience. Society for Neuroscience. https://doi.org/10.1523/JNEUROSCI.3374-12.2013 chicago: Jösch, Maximilian A, Franz Weber, Hubert Eichner, and Alexander Borst. “Functional Specialization of Parallel Motion Detection Circuits in the Fly.” Journal of Neuroscience. Society for Neuroscience, 2013. https://doi.org/10.1523/JNEUROSCI.3374-12.2013. ieee: M. A. Jösch, F. Weber, H. Eichner, and A. Borst, “Functional specialization of parallel motion detection circuits in the fly,” Journal of Neuroscience, vol. 33, no. 3. Society for Neuroscience, pp. 902–905, 2013. ista: Jösch MA, Weber F, Eichner H, Borst A. 2013. Functional specialization of parallel motion detection circuits in the fly. Journal of Neuroscience. 33(3), 902–905. mla: Jösch, Maximilian A., et al. “Functional Specialization of Parallel Motion Detection Circuits in the Fly.” Journal of Neuroscience, vol. 33, no. 3, Society for Neuroscience, 2013, pp. 902–05, doi:10.1523/JNEUROSCI.3374-12.2013. short: M.A. Jösch, F. Weber, H. Eichner, A. Borst, Journal of Neuroscience 33 (2013) 902–905. date_created: 2018-12-11T11:51:16Z date_published: 2013-01-16T00:00:00Z date_updated: 2021-01-12T06:49:45Z day: '16' doi: 10.1523/JNEUROSCI.3374-12.2013 extern: 1 intvolume: ' 33' issue: '3' month: '01' page: 902 - 905 publication: Journal of Neuroscience publication_status: published publisher: Society for Neuroscience publist_id: '5968' quality_controlled: 0 status: public title: Functional specialization of parallel motion detection circuits in the fly type: journal_article volume: 33 year: '2013' ... --- _id: '1308' abstract: - lang: eng text: We derive sufficient conditions for advection-driven backward motion of the free boundary in a chemotaxis model with degenerate mobility. In this model, a porous-medium-type diffusive term and an advection term are in competition. The former induces forward motion, the latter may induce backward motion of the free boundary depending on the direction of advection. We deduce conditions on the growth of the initial data at the free boundary which ensure that at least initially the advection term is dominant. This implies local backward motion of the free boundary provided the advection is (locally) directed appropriately. Our result is based on a new class of moving test functions and Stampacchia's lemma. As a by-product of our estimates, we obtain quantitative bounds on the spreading of the support of solutions for the chemotaxis model and provide a proof for the finite speed of the support propagation property of solutions. author: - first_name: Julian L full_name: Julian Fischer id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87 last_name: Fischer orcid: 0000-0002-0479-558X citation: ama: Fischer JL. Advection-driven support shrinking in a chemotaxis model with degenerate mobility. SIAM Journal on Mathematical Analysis. 2013;45(3):1585-1615. doi:10.1137/120874291 apa: Fischer, J. L. (2013). Advection-driven support shrinking in a chemotaxis model with degenerate mobility. SIAM Journal on Mathematical Analysis. Society for Industrial and Applied Mathematics . https://doi.org/10.1137/120874291 chicago: Fischer, Julian L. “Advection-Driven Support Shrinking in a Chemotaxis Model with Degenerate Mobility.” SIAM Journal on Mathematical Analysis. Society for Industrial and Applied Mathematics , 2013. https://doi.org/10.1137/120874291. ieee: J. L. Fischer, “Advection-driven support shrinking in a chemotaxis model with degenerate mobility,” SIAM Journal on Mathematical Analysis, vol. 45, no. 3. Society for Industrial and Applied Mathematics , pp. 1585–1615, 2013. ista: Fischer JL. 2013. Advection-driven support shrinking in a chemotaxis model with degenerate mobility. SIAM Journal on Mathematical Analysis. 45(3), 1585–1615. mla: Fischer, Julian L. “Advection-Driven Support Shrinking in a Chemotaxis Model with Degenerate Mobility.” SIAM Journal on Mathematical Analysis, vol. 45, no. 3, Society for Industrial and Applied Mathematics , 2013, pp. 1585–615, doi:10.1137/120874291. short: J.L. Fischer, SIAM Journal on Mathematical Analysis 45 (2013) 1585–1615. date_created: 2018-12-11T11:51:17Z date_published: 2013-01-01T00:00:00Z date_updated: 2021-01-12T06:49:46Z day: '01' doi: 10.1137/120874291 extern: 1 intvolume: ' 45' issue: '3' month: '01' page: 1585 - 1615 publication: SIAM Journal on Mathematical Analysis publication_status: published publisher: 'Society for Industrial and Applied Mathematics ' publist_id: '5963' quality_controlled: 0 status: public title: Advection-driven support shrinking in a chemotaxis model with degenerate mobility type: journal_article volume: 45 year: '2013' ... --- _id: '1307' abstract: - lang: eng text: We prove uniqueness of solutions of the DLSS equation in a class of sufficiently regular functions. The global weak solutions of the DLSS equation constructed by Jüngel and Matthes belong to this class of uniqueness. We also show uniqueness of solutions for the quantum drift-diffusion equation, which contains additional drift and second-order diffusion terms. The results hold in case of periodic or Dirichlet-Neumann boundary conditions. Our proof is based on a monotonicity property of the DLSS operator and sophisticated approximation arguments; we derive a PDE satisfied by the pointwise square root of the solution, which enables us to exploit the monotonicity property of the operator. author: - first_name: Julian L full_name: Julian Fischer id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87 last_name: Fischer orcid: 0000-0002-0479-558X citation: ama: Fischer JL. Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models. Communications in Partial Differential Equations. 2013;38(11):2004-2047. doi:10.1080/03605302.2013.823548 apa: Fischer, J. L. (2013). Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models. Communications in Partial Differential Equations. Taylor & Francis. https://doi.org/10.1080/03605302.2013.823548 chicago: Fischer, Julian L. “Uniqueness of Solutions of the Derrida-Lebowitz-Speer-Spohn Equation and Quantum Drift Diffusion Models.” Communications in Partial Differential Equations. Taylor & Francis, 2013. https://doi.org/10.1080/03605302.2013.823548. ieee: J. L. Fischer, “Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models,” Communications in Partial Differential Equations, vol. 38, no. 11. Taylor & Francis, pp. 2004–2047, 2013. ista: Fischer JL. 2013. Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models. Communications in Partial Differential Equations. 38(11), 2004–2047. mla: Fischer, Julian L. “Uniqueness of Solutions of the Derrida-Lebowitz-Speer-Spohn Equation and Quantum Drift Diffusion Models.” Communications in Partial Differential Equations, vol. 38, no. 11, Taylor & Francis, 2013, pp. 2004–47, doi:10.1080/03605302.2013.823548. short: J.L. Fischer, Communications in Partial Differential Equations 38 (2013) 2004–2047. date_created: 2018-12-11T11:51:17Z date_published: 2013-11-01T00:00:00Z date_updated: 2021-01-12T06:49:46Z day: '01' doi: 10.1080/03605302.2013.823548 extern: 1 intvolume: ' 38' issue: '11' month: '11' page: 2004 - 2047 publication: Communications in Partial Differential Equations publication_status: published publisher: Taylor & Francis publist_id: '5962' quality_controlled: 0 status: public title: Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models type: journal_article volume: 38 year: '2013' ... --- _id: '1310' abstract: - lang: eng text: We derive lower bounds on asymptotic support propagation rates for strong solutions of the Cauchy problem for the thin-film equation. The bounds coincide up to a constant factor with the previously known upper bounds and thus are sharp. Our results hold in case of at most three spatial dimensions and n∈. (1, 2.92). The result is established using weighted backward entropy inequalities with singular weight functions to yield a differential inequality; combined with some entropy production estimates, the optimal rate of propagation is obtained. To the best of our knowledge, these are the first lower bounds on asymptotic support propagation rates for higher-order nonnegativity-preserving parabolic equations. author: - first_name: Julian L full_name: Julian Fischer id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87 last_name: Fischer orcid: 0000-0002-0479-558X citation: ama: Fischer JL. Optimal lower bounds on asymptotic support propagation rates for the thin-film equation. Journal of Differential Equations. 2013;255(10):3127-3149. doi:10.1016/j.jde.2013.07.028 apa: Fischer, J. L. (2013). Optimal lower bounds on asymptotic support propagation rates for the thin-film equation. Journal of Differential Equations. Academic Press. https://doi.org/10.1016/j.jde.2013.07.028 chicago: Fischer, Julian L. “Optimal Lower Bounds on Asymptotic Support Propagation Rates for the Thin-Film Equation.” Journal of Differential Equations. Academic Press, 2013. https://doi.org/10.1016/j.jde.2013.07.028. ieee: J. L. Fischer, “Optimal lower bounds on asymptotic support propagation rates for the thin-film equation,” Journal of Differential Equations, vol. 255, no. 10. Academic Press, pp. 3127–3149, 2013. ista: Fischer JL. 2013. Optimal lower bounds on asymptotic support propagation rates for the thin-film equation. Journal of Differential Equations. 255(10), 3127–3149. mla: Fischer, Julian L. “Optimal Lower Bounds on Asymptotic Support Propagation Rates for the Thin-Film Equation.” Journal of Differential Equations, vol. 255, no. 10, Academic Press, 2013, pp. 3127–49, doi:10.1016/j.jde.2013.07.028. short: J.L. Fischer, Journal of Differential Equations 255 (2013) 3127–3149. date_created: 2018-12-11T11:51:18Z date_published: 2013-11-15T00:00:00Z date_updated: 2021-01-12T06:49:47Z day: '15' doi: 10.1016/j.jde.2013.07.028 extern: 1 intvolume: ' 255' issue: '10' month: '11' page: 3127 - 3149 publication: Journal of Differential Equations publication_status: published publisher: Academic Press publist_id: '5961' quality_controlled: 0 status: public title: Optimal lower bounds on asymptotic support propagation rates for the thin-film equation type: journal_article volume: 255 year: '2013' ... --- _id: '1374' abstract: - lang: eng text: 'We study two-player zero-sum games over infinite-state graphs equipped with ωB and finitary conditions. Our first contribution is about the strategy complexity, i.e the memory required for winning strategies: we prove that over general infinite-state graphs, memoryless strategies are sufficient for finitary Büchi, and finite-memory suffices for finitary parity games. We then study pushdown games with boundedness conditions, with two contributions. First we prove a collapse result for pushdown games with ωB-conditions, implying the decidability of solving these games. Second we consider pushdown games with finitary parity along with stack boundedness conditions, and show that solving these games is EXPTIME-complete.' alternative_title: - LIPIcs author: - first_name: Krishnendu full_name: Chatterjee, Krishnendu id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87 last_name: Chatterjee orcid: 0000-0002-4561-241X - first_name: Nathanaël full_name: Fijalkow, Nathanaël last_name: Fijalkow citation: ama: 'Chatterjee K, Fijalkow N. Infinite-state games with finitary conditions. In: 22nd EACSL Annual Conference on Computer Science Logic. Vol 23. Leibniz International Proceedings in Informatics. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2013:181-196. doi:10.4230/LIPIcs.CSL.2013.181' apa: 'Chatterjee, K., & Fijalkow, N. (2013). Infinite-state games with finitary conditions. In 22nd EACSL Annual Conference on Computer Science Logic (Vol. 23, pp. 181–196). Torino, Italy: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.CSL.2013.181' chicago: Chatterjee, Krishnendu, and Nathanaël Fijalkow. “Infinite-State Games with Finitary Conditions.” In 22nd EACSL Annual Conference on Computer Science Logic, 23:181–96. Leibniz International Proceedings in Informatics. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013. https://doi.org/10.4230/LIPIcs.CSL.2013.181. ieee: K. Chatterjee and N. Fijalkow, “Infinite-state games with finitary conditions,” in 22nd EACSL Annual Conference on Computer Science Logic, Torino, Italy, 2013, vol. 23, pp. 181–196. ista: 'Chatterjee K, Fijalkow N. 2013. Infinite-state games with finitary conditions. 22nd EACSL Annual Conference on Computer Science Logic. CSL: Computer Science LogicLeibniz International Proceedings in Informatics, LIPIcs, vol. 23, 181–196.' mla: Chatterjee, Krishnendu, and Nathanaël Fijalkow. “Infinite-State Games with Finitary Conditions.” 22nd EACSL Annual Conference on Computer Science Logic, vol. 23, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013, pp. 181–96, doi:10.4230/LIPIcs.CSL.2013.181. short: K. Chatterjee, N. Fijalkow, in:, 22nd EACSL Annual Conference on Computer Science Logic, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013, pp. 181–196. conference: end_date: 2013-09-05 location: Torino, Italy name: 'CSL: Computer Science Logic' start_date: 203-09-02 date_created: 2018-12-11T11:51:39Z date_published: 2013-09-01T00:00:00Z date_updated: 2021-01-12T06:50:14Z day: '01' ddc: - '000' department: - _id: KrCh doi: 10.4230/LIPIcs.CSL.2013.181 ec_funded: 1 file: - access_level: open_access checksum: b7091a3866db573c0db5ec486952255e content_type: application/pdf creator: system date_created: 2018-12-12T10:13:38Z date_updated: 2020-07-14T12:44:47Z file_id: '5023' file_name: IST-2016-624-v1+1_ChKr_Infinite-state_games_2013_17.pdf file_size: 547296 relation: main_file file_date_updated: 2020-07-14T12:44:47Z has_accepted_license: '1' intvolume: ' 23' language: - iso: eng license: https://creativecommons.org/licenses/by/4.0/ month: '09' oa: 1 oa_version: Published Version page: 181 - 196 project: - _id: 2584A770-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: P 23499-N23 name: Modern Graph Algorithmic Techniques in Formal Verification - _id: 25863FF4-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: S11407 name: Game Theory - _id: 2581B60A-B435-11E9-9278-68D0E5697425 call_identifier: FP7 grant_number: '279307' name: 'Quantitative Graph Games: Theory and Applications' - _id: 2587B514-B435-11E9-9278-68D0E5697425 name: Microsoft Research Faculty Fellowship publication: 22nd EACSL Annual Conference on Computer Science Logic publication_status: published publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik publist_id: '5837' pubrep_id: '624' quality_controlled: '1' scopus_import: 1 series_title: Leibniz International Proceedings in Informatics status: public title: Infinite-state games with finitary conditions tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 23 year: '2013' ... --- _id: '1385' abstract: - lang: eng text: It is often difficult to correctly implement a Boolean controller for a complex system, especially when concurrency is involved. Yet, it may be easy to formally specify a controller. For instance, for a pipelined processor it suffices to state that the visible behavior of the pipelined system should be identical to a non-pipelined reference system (Burch-Dill paradigm). We present a novel procedure to efficiently synthesize multiple Boolean control signals from a specification given as a quantified first-order formula (with a specific quantifier structure). Our approach uses uninterpreted functions to abstract details of the design. We construct an unsatisfiable SMT formula from the given specification. Then, from just one proof of unsatisfiability, we use a variant of Craig interpolation to compute multiple coordinated interpolants that implement the Boolean control signals. Our method avoids iterative learning and back-substitution of the control functions. We applied our approach to synthesize a controller for a simple two-stage pipelined processor, and present first experimental results. acknowledgement: "This research was supported by the European Commission through project\r\nDIAMOND \ (FP7-2009-IST-4-248613), and QUAINT (I774-N23), " author: - first_name: Georg full_name: Hofferek, Georg last_name: Hofferek - first_name: Ashutosh full_name: Gupta, Ashutosh id: 335E5684-F248-11E8-B48F-1D18A9856A87 last_name: Gupta - first_name: Bettina full_name: Könighofer, Bettina last_name: Könighofer - first_name: Jie full_name: Jiang, Jie last_name: Jiang - first_name: Roderick full_name: Bloem, Roderick last_name: Bloem citation: ama: 'Hofferek G, Gupta A, Könighofer B, Jiang J, Bloem R. Synthesizing multiple boolean functions using interpolation on a single proof. In: 2013 Formal Methods in Computer-Aided Design. IEEE; 2013:77-84. doi:10.1109/FMCAD.2013.6679394' apa: 'Hofferek, G., Gupta, A., Könighofer, B., Jiang, J., & Bloem, R. (2013). Synthesizing multiple boolean functions using interpolation on a single proof. In 2013 Formal Methods in Computer-Aided Design (pp. 77–84). Portland, OR, United States: IEEE. https://doi.org/10.1109/FMCAD.2013.6679394' chicago: Hofferek, Georg, Ashutosh Gupta, Bettina Könighofer, Jie Jiang, and Roderick Bloem. “Synthesizing Multiple Boolean Functions Using Interpolation on a Single Proof.” In 2013 Formal Methods in Computer-Aided Design, 77–84. IEEE, 2013. https://doi.org/10.1109/FMCAD.2013.6679394. ieee: G. Hofferek, A. Gupta, B. Könighofer, J. Jiang, and R. Bloem, “Synthesizing multiple boolean functions using interpolation on a single proof,” in 2013 Formal Methods in Computer-Aided Design, Portland, OR, United States, 2013, pp. 77–84. ista: 'Hofferek G, Gupta A, Könighofer B, Jiang J, Bloem R. 2013. Synthesizing multiple boolean functions using interpolation on a single proof. 2013 Formal Methods in Computer-Aided Design. FMCAD: Formal Methods in Computer-Aided Design, 77–84.' mla: Hofferek, Georg, et al. “Synthesizing Multiple Boolean Functions Using Interpolation on a Single Proof.” 2013 Formal Methods in Computer-Aided Design, IEEE, 2013, pp. 77–84, doi:10.1109/FMCAD.2013.6679394. short: G. Hofferek, A. Gupta, B. Könighofer, J. Jiang, R. Bloem, in:, 2013 Formal Methods in Computer-Aided Design, IEEE, 2013, pp. 77–84. conference: end_date: 2013-10-23 location: Portland, OR, United States name: 'FMCAD: Formal Methods in Computer-Aided Design' start_date: 2013-10-20 date_created: 2018-12-11T11:51:43Z date_published: 2013-12-11T00:00:00Z date_updated: 2021-01-12T06:50:19Z day: '11' department: - _id: ToHe doi: 10.1109/FMCAD.2013.6679394 ec_funded: 1 external_id: arxiv: - '1308.4767' language: - iso: eng main_file_link: - open_access: '1' url: http://arxiv.org/abs/1308.4767 month: '12' oa: 1 oa_version: Preprint page: 77 - 84 project: - _id: 25832EC2-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: S 11407_N23 name: Rigorous Systems Engineering - _id: 25EE3708-B435-11E9-9278-68D0E5697425 call_identifier: FP7 grant_number: '267989' name: Quantitative Reactive Modeling publication: 2013 Formal Methods in Computer-Aided Design publication_status: published publisher: IEEE publist_id: '5825' quality_controlled: '1' status: public title: Synthesizing multiple boolean functions using interpolation on a single proof type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2013' ... --- _id: '1387' abstract: - lang: eng text: Choices made by nondeterministic word automata depend on both the past (the prefix of the word read so far) and the future (the suffix yet to be read). In several applications, most notably synthesis, the future is diverse or unknown, leading to algorithms that are based on deterministic automata. Hoping to retain some of the advantages of nondeterministic automata, researchers have studied restricted classes of nondeterministic automata. Three such classes are nondeterministic automata that are good for trees (GFT; i.e., ones that can be expanded to tree automata accepting the derived tree languages, thus whose choices should satisfy diverse futures), good for games (GFG; i.e., ones whose choices depend only on the past), and determinizable by pruning (DBP; i.e., ones that embody equivalent deterministic automata). The theoretical properties and relative merits of the different classes are still open, having vagueness on whether they really differ from deterministic automata. In particular, while DBP ⊆ GFG ⊆ GFT, it is not known whether every GFT automaton is GFG and whether every GFG automaton is DBP. Also open is the possible succinctness of GFG and GFT automata compared to deterministic automata. We study these problems for ω-regular automata with all common acceptance conditions. We show that GFT=GFG⊃DBP, and describe a determinization construction for GFG automata. acknowledgement: and ERC Grant QUALITY. alternative_title: - LNCS article_processing_charge: No author: - first_name: Udi full_name: Boker, Udi id: 31E297B6-F248-11E8-B48F-1D18A9856A87 last_name: Boker - first_name: Denis full_name: Kuperberg, Denis last_name: Kuperberg - first_name: Orna full_name: Kupferman, Orna last_name: Kupferman - first_name: Michał full_name: Skrzypczak, Michał last_name: Skrzypczak citation: ama: Boker U, Kuperberg D, Kupferman O, Skrzypczak M. Nondeterminism in the presence of a diverse or unknown future. 2013;7966(PART 2):89-100. doi:10.1007/978-3-642-39212-2_11 apa: 'Boker, U., Kuperberg, D., Kupferman, O., & Skrzypczak, M. (2013). Nondeterminism in the presence of a diverse or unknown future. Presented at the ICALP: Automata, Languages and Programming, Riga, Latvia: Springer. https://doi.org/10.1007/978-3-642-39212-2_11' chicago: Boker, Udi, Denis Kuperberg, Orna Kupferman, and Michał Skrzypczak. “Nondeterminism in the Presence of a Diverse or Unknown Future.” Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-39212-2_11. ieee: U. Boker, D. Kuperberg, O. Kupferman, and M. Skrzypczak, “Nondeterminism in the presence of a diverse or unknown future,” vol. 7966, no. PART 2. Springer, pp. 89–100, 2013. ista: Boker U, Kuperberg D, Kupferman O, Skrzypczak M. 2013. Nondeterminism in the presence of a diverse or unknown future. 7966(PART 2), 89–100. mla: Boker, Udi, et al. Nondeterminism in the Presence of a Diverse or Unknown Future. Vol. 7966, no. PART 2, Springer, 2013, pp. 89–100, doi:10.1007/978-3-642-39212-2_11. short: U. Boker, D. Kuperberg, O. Kupferman, M. Skrzypczak, 7966 (2013) 89–100. conference: end_date: 2013-07-12 location: Riga, Latvia name: 'ICALP: Automata, Languages and Programming' start_date: 2013-07-08 date_created: 2018-12-11T11:51:44Z date_published: 2013-07-01T00:00:00Z date_updated: 2020-08-11T10:09:09Z day: '01' ddc: - '000' department: - _id: ToHe doi: 10.1007/978-3-642-39212-2_11 ec_funded: 1 file: - access_level: open_access checksum: 98bc02e3793072e279ec8d364b381ff3 content_type: application/pdf creator: dernst date_created: 2020-05-15T11:05:50Z date_updated: 2020-07-14T12:44:48Z file_id: '7857' file_name: 2013_ICALP_Boker.pdf file_size: 276982 relation: main_file file_date_updated: 2020-07-14T12:44:48Z has_accepted_license: '1' intvolume: ' 7966' issue: PART 2 language: - iso: eng month: '07' oa: 1 oa_version: Submitted Version page: 89 - 100 project: - _id: 25832EC2-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: S 11407_N23 name: Rigorous Systems Engineering - _id: 25EE3708-B435-11E9-9278-68D0E5697425 call_identifier: FP7 grant_number: '267989' name: Quantitative Reactive Modeling publication_status: published publisher: Springer publist_id: '5823' quality_controlled: '1' scopus_import: 1 series_title: Lecture Notes in Computer Science status: public title: Nondeterminism in the presence of a diverse or unknown future type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 7966 year: '2013' ... --- _id: '1442' abstract: - lang: eng text: We give a cohomological interpretation of both the Kac polynomial and the refined Donaldson-Thomas-invariants of quivers. This interpretation yields a proof of a conjecture of Kac from 1982 and gives a new perspective on recent work of Kontsevich-Soibelman. Thisis achieved by computing, via an arithmetic Fourier transform, the dimensions of the isotypical components of the cohomology of associated Nakajima quiver varieties under the action of a Weyl group. The generating function of the corresponding Poincare polynomials is an extension of Hua's formula for Kac polynomials of quivers involving Hall-Littlewood symmetric functions. The resulting formulae contain a wide range of information on the geometry of the quiver varieties. acknowledgement: |- The first author thanks the Royal Society for funding his research 2005-2012 in the form of a Royal Society University Research Fellowship as well as the Mathematical Institute and Wadham College in Oxford for a very productive environment. The second author is supported by Agence Nationale de la Recherche grant ANR-09-JCJC-0102-01. The third author is supported by the NSF grant DMS-1101484 and a Research Scholarship from the Clay Mathematical Institute. author: - first_name: Tamas full_name: Tamas Hausel id: 4A0666D8-F248-11E8-B48F-1D18A9856A87 last_name: Hausel - first_name: Emmanuel full_name: Letellier, Emmanuel last_name: Letellier - first_name: Fernando full_name: Rodríguez Villegas, Fernando last_name: Rodríguez Villegas citation: ama: Hausel T, Letellier E, Rodríguez Villegas F. Positivity for Kac polynomials and DT-invariants of quivers. Annals of Mathematics. 2013;177(3):1147-1168. doi:10.4007/annals.2013.177.3.8 apa: Hausel, T., Letellier, E., & Rodríguez Villegas, F. (2013). Positivity for Kac polynomials and DT-invariants of quivers. Annals of Mathematics. Princeton University Press. https://doi.org/10.4007/annals.2013.177.3.8 chicago: Hausel, Tamás, Emmanuel Letellier, and Fernando Rodríguez Villegas. “Positivity for Kac Polynomials and DT-Invariants of Quivers.” Annals of Mathematics. Princeton University Press, 2013. https://doi.org/10.4007/annals.2013.177.3.8. ieee: T. Hausel, E. Letellier, and F. Rodríguez Villegas, “Positivity for Kac polynomials and DT-invariants of quivers,” Annals of Mathematics, vol. 177, no. 3. Princeton University Press, pp. 1147–1168, 2013. ista: Hausel T, Letellier E, Rodríguez Villegas F. 2013. Positivity for Kac polynomials and DT-invariants of quivers. Annals of Mathematics. 177(3), 1147–1168. mla: Hausel, Tamás, et al. “Positivity for Kac Polynomials and DT-Invariants of Quivers.” Annals of Mathematics, vol. 177, no. 3, Princeton University Press, 2013, pp. 1147–68, doi:10.4007/annals.2013.177.3.8. short: T. Hausel, E. Letellier, F. Rodríguez Villegas, Annals of Mathematics 177 (2013) 1147–1168. date_created: 2018-12-11T11:52:02Z date_published: 2013-01-01T00:00:00Z date_updated: 2021-01-12T06:50:47Z day: '01' doi: 10.4007/annals.2013.177.3.8 extern: 1 intvolume: ' 177' issue: '3' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1204.2375 month: '01' oa: 1 page: 1147 - 1168 publication: Annals of Mathematics publication_status: published publisher: Princeton University Press publist_id: '5754' quality_controlled: 0 status: public title: Positivity for Kac polynomials and DT-invariants of quivers type: journal_article volume: 177 year: '2013' ... --- _id: '1443' abstract: - lang: eng text: 'Here we survey several results and conjectures on the cohomology of the total space of the Hitchin system: the moduli space of semi-stable rank n and degree d Higgs bundles on a complex algebraic curve C. The picture emerging is a dynamic mixture of ideas originating in theoretical physics such as gauge theory and mirror symmetry, Weil conjectures in arithmetic algebraic geometry, representation theory of finite groups of Lie type and Langlands duality in number theory.' alternative_title: - Advanced Lectures in Mathematics author: - first_name: Tamas full_name: Tamas Hausel id: 4A0666D8-F248-11E8-B48F-1D18A9856A87 last_name: Hausel citation: ama: 'Hausel T. Global topology of the Hitchin system. In: Handbook of Moduli: Volume II. Vol 25. International Press; 2013:29-70.' apa: 'Hausel, T. (2013). Global topology of the Hitchin system. In Handbook of Moduli: Volume II (Vol. 25, pp. 29–70). International Press.' chicago: 'Hausel, Tamás. “Global Topology of the Hitchin System.” In Handbook of Moduli: Volume II, 25:29–70. International Press, 2013.' ieee: 'T. Hausel, “Global topology of the Hitchin system,” in Handbook of Moduli: Volume II, vol. 25, International Press, 2013, pp. 29–70.' ista: 'Hausel T. 2013.Global topology of the Hitchin system. In: Handbook of Moduli: Volume II. Advanced Lectures in Mathematics, vol. 25, 29–70.' mla: 'Hausel, Tamás. “Global Topology of the Hitchin System.” Handbook of Moduli: Volume II, vol. 25, International Press, 2013, pp. 29–70.' short: 'T. Hausel, in:, Handbook of Moduli: Volume II, International Press, 2013, pp. 29–70.' date_created: 2018-12-11T11:52:03Z date_published: 2013-03-15T00:00:00Z date_updated: 2021-01-12T06:50:47Z day: '15' extern: 1 intvolume: ' 25' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1102.1717 month: '03' oa: 1 page: 29 - 70 publication: 'Handbook of Moduli: Volume II' publication_status: published publisher: International Press publist_id: '5753' quality_controlled: 0 status: public title: Global topology of the Hitchin system type: book_chapter volume: 25 year: '2013' ... --- _id: '1469' abstract: - lang: eng text: We study connections between the topology of generic character varieties of fundamental groups of punctured Riemann surfaces, Macdonald polynomials, quiver representations, Hilbert schemes on Cx × Cx, modular forms and multiplicities in tensor products of irreducible characters of finite general linear groups. acknowledgement: During the preparation of this paper TH was supported by a Royal Society University Research Fellowship at the University of Oxford. EL was supported by ANR-09-JCJC-0102-01. FRV was supported by NSF grant DMS-0200605, an FRA from the University of Texas at Austin, EPSRC grant EP/G027110/1, Visiting Fellowships at All Souls and Wadham Colleges in Oxford and a Research Scholarship from the Clay Mathematical Institute. author: - first_name: Tamas full_name: Tamas Hausel id: 4A0666D8-F248-11E8-B48F-1D18A9856A87 last_name: Hausel - first_name: Emmanuel full_name: Letellier, Emmanuel last_name: Letellier - first_name: Fernando full_name: Rodríguez Villegas, Fernando last_name: Rodríguez Villegas citation: ama: Hausel T, Letellier E, Rodríguez Villegas F. Arithmetic harmonic analysis on character and quiver varieties II. Advances in Mathematics. 2013;234:85-128. doi:10.1016/j.aim.2012.10.009 apa: Hausel, T., Letellier, E., & Rodríguez Villegas, F. (2013). Arithmetic harmonic analysis on character and quiver varieties II. Advances in Mathematics. Academic Press. https://doi.org/10.1016/j.aim.2012.10.009 chicago: Hausel, Tamás, Emmanuel Letellier, and Fernando Rodríguez Villegas. “Arithmetic Harmonic Analysis on Character and Quiver Varieties II.” Advances in Mathematics. Academic Press, 2013. https://doi.org/10.1016/j.aim.2012.10.009. ieee: T. Hausel, E. Letellier, and F. Rodríguez Villegas, “Arithmetic harmonic analysis on character and quiver varieties II,” Advances in Mathematics, vol. 234. Academic Press, pp. 85–128, 2013. ista: Hausel T, Letellier E, Rodríguez Villegas F. 2013. Arithmetic harmonic analysis on character and quiver varieties II. Advances in Mathematics. 234, 85–128. mla: Hausel, Tamás, et al. “Arithmetic Harmonic Analysis on Character and Quiver Varieties II.” Advances in Mathematics, vol. 234, Academic Press, 2013, pp. 85–128, doi:10.1016/j.aim.2012.10.009. short: T. Hausel, E. Letellier, F. Rodríguez Villegas, Advances in Mathematics 234 (2013) 85–128. date_created: 2018-12-11T11:52:12Z date_published: 2013-02-15T00:00:00Z date_updated: 2021-01-12T06:50:57Z day: '15' doi: 10.1016/j.aim.2012.10.009 extern: 1 intvolume: ' 234' month: '02' page: 85 - 128 publication: Advances in Mathematics publication_status: published publisher: Academic Press publist_id: '5724' quality_controlled: 0 status: public title: Arithmetic harmonic analysis on character and quiver varieties II type: journal_article volume: 234 year: '2013' ... --- _id: '1470' abstract: - lang: eng text: We show that a natural isomorphism between the rational cohomology groups of the two zero-dimensional Hilbert schemes of n-points of two surfaces, the affine plane minus the axes and the cotangent bundle of an elliptic curve, exchanges the weight filtration on the first set of cohomology groups with the perverse Leray filtration associated with a natural fibration on the second set of cohomology groups. We discuss some associated hard Lefschetz phenomena. acknowledgement: Mark Andrea A. de Cataldo was partially supported by N.S.A. and N.S.F. Tamás Hausel was supported by a Royal Society University Research Fellowship. Luca Migliorini was partially supported by PRIN 2007 project "Spazi di moduli e teoria di Lie" author: - first_name: Mark full_name: De Cataldo, Mark A last_name: De Cataldo - first_name: Tamas full_name: Tamas Hausel id: 4A0666D8-F248-11E8-B48F-1D18A9856A87 last_name: Hausel - first_name: Luca full_name: Migliorini, Luca last_name: Migliorini citation: ama: De Cataldo M, Hausel T, Migliorini L. Exchange between perverse and weight filtration for the Hilbert schemes of points of two surfaces. Journal of Singularities. 2013;7:23-38. doi:10.5427/jsing.2013.7c apa: De Cataldo, M., Hausel, T., & Migliorini, L. (2013). Exchange between perverse and weight filtration for the Hilbert schemes of points of two surfaces. Journal of Singularities. Worldwide Center of Mathematics. https://doi.org/10.5427/jsing.2013.7c chicago: De Cataldo, Mark, Tamás Hausel, and Luca Migliorini. “Exchange between Perverse and Weight Filtration for the Hilbert Schemes of Points of Two Surfaces.” Journal of Singularities. Worldwide Center of Mathematics, 2013. https://doi.org/10.5427/jsing.2013.7c. ieee: M. De Cataldo, T. Hausel, and L. Migliorini, “Exchange between perverse and weight filtration for the Hilbert schemes of points of two surfaces,” Journal of Singularities, vol. 7. Worldwide Center of Mathematics, pp. 23–38, 2013. ista: De Cataldo M, Hausel T, Migliorini L. 2013. Exchange between perverse and weight filtration for the Hilbert schemes of points of two surfaces. Journal of Singularities. 7, 23–38. mla: De Cataldo, Mark, et al. “Exchange between Perverse and Weight Filtration for the Hilbert Schemes of Points of Two Surfaces.” Journal of Singularities, vol. 7, Worldwide Center of Mathematics, 2013, pp. 23–38, doi:10.5427/jsing.2013.7c. short: M. De Cataldo, T. Hausel, L. Migliorini, Journal of Singularities 7 (2013) 23–38. date_created: 2018-12-11T11:52:12Z date_published: 2013-01-01T00:00:00Z date_updated: 2021-01-12T06:50:58Z day: '01' doi: 10.5427/jsing.2013.7c extern: 1 intvolume: ' 7' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1012.2583 month: '01' oa: 1 page: 23 - 38 publication: Journal of Singularities publication_status: published publisher: Worldwide Center of Mathematics publist_id: '5725' quality_controlled: 0 status: public title: Exchange between perverse and weight filtration for the Hilbert schemes of points of two surfaces type: journal_article volume: 7 year: '2013' ... --- _id: '11758' article_processing_charge: No article_type: letter_note author: - first_name: Luca full_name: Aceto, Luca last_name: Aceto - first_name: Monika H full_name: Henzinger, Monika H id: 540c9bbd-f2de-11ec-812d-d04a5be85630 last_name: Henzinger orcid: 0000-0002-5008-6530 - first_name: Jiří full_name: Sgall, Jiří last_name: Sgall citation: ama: Aceto L, Henzinger MH, Sgall J. 38th International Colloquium on Automata, Languages and Programming. Information and Computation. 2013;222(1):1. doi:10.1016/j.ic.2012.11.002 apa: Aceto, L., Henzinger, M. H., & Sgall, J. (2013). 38th International Colloquium on Automata, Languages and Programming. Information and Computation. Elsevier. https://doi.org/10.1016/j.ic.2012.11.002 chicago: Aceto, Luca, Monika H Henzinger, and Jiří Sgall. “38th International Colloquium on Automata, Languages and Programming.” Information and Computation. Elsevier, 2013. https://doi.org/10.1016/j.ic.2012.11.002. ieee: L. Aceto, M. H. Henzinger, and J. Sgall, “38th International Colloquium on Automata, Languages and Programming,” Information and Computation, vol. 222, no. 1. Elsevier, p. 1, 2013. ista: Aceto L, Henzinger MH, Sgall J. 2013. 38th International Colloquium on Automata, Languages and Programming. Information and Computation. 222(1), 1. mla: Aceto, Luca, et al. “38th International Colloquium on Automata, Languages and Programming.” Information and Computation, vol. 222, no. 1, Elsevier, 2013, p. 1, doi:10.1016/j.ic.2012.11.002. short: L. Aceto, M.H. Henzinger, J. Sgall, Information and Computation 222 (2013) 1. date_created: 2022-08-08T11:25:34Z date_published: 2013-01-01T00:00:00Z date_updated: 2023-02-23T10:09:19Z day: '01' doi: 10.1016/j.ic.2012.11.002 extern: '1' intvolume: ' 222' issue: '1' language: - iso: eng month: '01' oa_version: None page: '1' publication: Information and Computation publication_identifier: issn: - 0890-5401 publication_status: published publisher: Elsevier quality_controlled: '1' scopus_import: '1' status: public title: 38th International Colloquium on Automata, Languages and Programming type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 222 year: '2013' ... --- _id: '1726' abstract: - lang: eng text: The development of a functional tissue requires coordination of the amplification of progenitors and their differentiation into specific cell types. The molecular basis for this coordination during myotome ontogeny is not well understood. Dermomytome progenitors that colonize the myotome first acquire myocyte identity and subsequently proliferate as Pax7-expressing progenitors before undergoing terminal differentiation. We show that the dynamics of sonic hedgehog (Shh) signaling is crucial for this transition in both avian and mouse embryos. Initially, Shh ligand emanating from notochord/floor plate reaches the dermomyotome, where it both maintains the proliferation of dermomyotome cells and promotes myogenic differentiation of progenitors that colonized the myotome. Interfering with Shh signaling at this stage produces small myotomes and accumulation of Pax7-expressing progenitors. An in vivo reporter of Shh activity combined with mouse genetics revealed the existence of both activator and repressor Shh activities operating on distinct subsets of cells during the epaxial myotomal maturation. In contrast to observations in mice, in avians Shh promotes the differentiation of both epaxial and hypaxial myotome domains. Subsequently, myogenic progenitors become refractory to Shh; this is likely to occur at the level of, or upstream of, smoothened signaling. The end of responsiveness to Shh coincides with, and is thus likely to enable, the transition into the growth phase of the myotome. acknowledgement: This study was supported by grants from the Israel Science Foundation (ISF) [11/09 to C.K.]; the Association Francaise contre les Myopathies (AFM) [15642 to C.K.]; the German Research Foundation (DFG) [UN 34/27-1 to C.K.]; the UK Medical Research Council (MRC) [U117560541 to J.B. and A.K.]; Fondation Pour la Recherche Médicale (FRM) (post-doctoral fellowship to V.R.). Deposited in PMC for release after 6 months author: - first_name: Nitza full_name: Kahane, Nitza last_name: Kahane - first_name: Vanessa full_name: Ribes, Vanessa last_name: Ribes - first_name: Anna full_name: Anna Kicheva id: 3959A2A0-F248-11E8-B48F-1D18A9856A87 last_name: Kicheva orcid: 0000-0003-4509-4998 - first_name: James full_name: Briscoe, James last_name: Briscoe - first_name: Chaya full_name: Kalcheim, Chaya last_name: Kalcheim citation: ama: Kahane N, Ribes V, Kicheva A, Briscoe J, Kalcheim C. The transition from differentiation to growth during dermomyotome-derived myogenesis depends on temporally restricted hedgehog signaling. Development. 2013;140(8):1740-1750. doi:10.1242/dev.092726 apa: Kahane, N., Ribes, V., Kicheva, A., Briscoe, J., & Kalcheim, C. (2013). The transition from differentiation to growth during dermomyotome-derived myogenesis depends on temporally restricted hedgehog signaling. Development. Company of Biologists. https://doi.org/10.1242/dev.092726 chicago: Kahane, Nitza, Vanessa Ribes, Anna Kicheva, James Briscoe, and Chaya Kalcheim. “The Transition from Differentiation to Growth during Dermomyotome-Derived Myogenesis Depends on Temporally Restricted Hedgehog Signaling.” Development. Company of Biologists, 2013. https://doi.org/10.1242/dev.092726. ieee: N. Kahane, V. Ribes, A. Kicheva, J. Briscoe, and C. Kalcheim, “The transition from differentiation to growth during dermomyotome-derived myogenesis depends on temporally restricted hedgehog signaling,” Development, vol. 140, no. 8. Company of Biologists, pp. 1740–1750, 2013. ista: Kahane N, Ribes V, Kicheva A, Briscoe J, Kalcheim C. 2013. The transition from differentiation to growth during dermomyotome-derived myogenesis depends on temporally restricted hedgehog signaling. Development. 140(8), 1740–1750. mla: Kahane, Nitza, et al. “The Transition from Differentiation to Growth during Dermomyotome-Derived Myogenesis Depends on Temporally Restricted Hedgehog Signaling.” Development, vol. 140, no. 8, Company of Biologists, 2013, pp. 1740–50, doi:10.1242/dev.092726. short: N. Kahane, V. Ribes, A. Kicheva, J. Briscoe, C. Kalcheim, Development 140 (2013) 1740–1750. date_created: 2018-12-11T11:53:41Z date_published: 2013-04-18T00:00:00Z date_updated: 2021-01-12T06:52:47Z day: '18' doi: 10.1242/dev.092726 extern: 1 intvolume: ' 140' issue: '8' month: '04' page: 1740 - 1750 publication: Development publication_status: published publisher: Company of Biologists publist_id: '5402' quality_controlled: 0 status: public title: The transition from differentiation to growth during dermomyotome-derived myogenesis depends on temporally restricted hedgehog signaling type: journal_article volume: 140 year: '2013' ... --- _id: '1727' abstract: - lang: eng text: 'Cells at different positions in a developing tissue receive different concentrations of signaling molecules, called morphogens, and this influences their cell fate. Morphogen concentration gradients have been proposed to control patterning as well as growth in many developing tissues. Some outstanding questions about tissue patterning by morphogen gradients are the following: What are the mechanisms that regulate gradient formation and shape? Is the positional information encoded in the gradient sufficiently precise to determine the positions of target gene domain boundaries? What are the temporal dynamics of gradients and how do they relate to patterning and growth? These questions are inherently quantitative in nature and addressing them requires measuring morphogen concentrations in cells, levels of downstream signaling activity, and kinetics of morphogen transport. Here we first present methods for quantifying morphogen gradient shape in which the measurements can be calibrated to reflect actual morphogen concentrations. We then discuss using fluorescence recovery after photobleaching to study the kinetics of morphogen transport at the tissue level. Finally, we present particle tracking as a method to study morphogen intracellular trafficking.' author: - first_name: Anna full_name: Anna Kicheva id: 3959A2A0-F248-11E8-B48F-1D18A9856A87 last_name: Kicheva orcid: 0000-0003-4509-4998 - first_name: Laurent full_name: Holtzer, Laurent last_name: Holtzer - first_name: Ortrud full_name: Wartlick, Ortrud last_name: Wartlick - first_name: Thomas full_name: Schmidt, Thomas S last_name: Schmidt - first_name: Marcos full_name: González-Gaitán, Marcos A last_name: González Gaitán citation: ama: Kicheva A, Holtzer L, Wartlick O, Schmidt T, González Gaitán M. Quantitative imaging of morphogen gradients in drosophila imaginal discs. Cold Spring Harbor Protocols. 2013;8(5):387-403. doi:10.1101/pdb.top074237 apa: Kicheva, A., Holtzer, L., Wartlick, O., Schmidt, T., & González Gaitán, M. (2013). Quantitative imaging of morphogen gradients in drosophila imaginal discs. Cold Spring Harbor Protocols. Cold Spring Harbor Laboratory Press. https://doi.org/10.1101/pdb.top074237 chicago: Kicheva, Anna, Laurent Holtzer, Ortrud Wartlick, Thomas Schmidt, and Marcos González Gaitán. “Quantitative Imaging of Morphogen Gradients in Drosophila Imaginal Discs.” Cold Spring Harbor Protocols. Cold Spring Harbor Laboratory Press, 2013. https://doi.org/10.1101/pdb.top074237. ieee: A. Kicheva, L. Holtzer, O. Wartlick, T. Schmidt, and M. González Gaitán, “Quantitative imaging of morphogen gradients in drosophila imaginal discs,” Cold Spring Harbor Protocols, vol. 8, no. 5. Cold Spring Harbor Laboratory Press, pp. 387–403, 2013. ista: Kicheva A, Holtzer L, Wartlick O, Schmidt T, González Gaitán M. 2013. Quantitative imaging of morphogen gradients in drosophila imaginal discs. Cold Spring Harbor Protocols. 8(5), 387–403. mla: Kicheva, Anna, et al. “Quantitative Imaging of Morphogen Gradients in Drosophila Imaginal Discs.” Cold Spring Harbor Protocols, vol. 8, no. 5, Cold Spring Harbor Laboratory Press, 2013, pp. 387–403, doi:10.1101/pdb.top074237. short: A. Kicheva, L. Holtzer, O. Wartlick, T. Schmidt, M. González Gaitán, Cold Spring Harbor Protocols 8 (2013) 387–403. date_created: 2018-12-11T11:53:41Z date_published: 2013-05-01T00:00:00Z date_updated: 2021-01-12T06:52:47Z day: '01' doi: 10.1101/pdb.top074237 extern: 1 intvolume: ' 8' issue: '5' month: '05' page: 387 - 403 publication: Cold Spring Harbor Protocols publication_status: published publisher: Cold Spring Harbor Laboratory Press publist_id: '5401' quality_controlled: 0 status: public title: Quantitative imaging of morphogen gradients in drosophila imaginal discs type: journal_article volume: 8 year: '2013' ... --- _id: '1760' abstract: - lang: eng text: We report on hole g-factor measurements in three terminal SiGe self-assembled quantum dot devices with a top gate electrode positioned very close to the nanostructure. Measurements of both the perpendicular as well as the parallel g-factor reveal significant changes for a small modulation of the top gate voltage. From the observed modulations, we estimate that, for realistic experimental conditions, hole spins can be electrically manipulated with Rabi frequencies in the order of 100 MHz. This work emphasises the potential of hole-based nano-devices for efficient spin manipulation by means of the g-tensor modulation technique. acknowledgement: We acknowledge the financial support from the Nanosciences Foundation (Grenoble, France), the Commission for a Marie Curie Carrer Integration Grant, the Austrian Science Fund (FWF) for a Lise-Meitner Fellowship (M1435-N30), the DOE under Contract No. DE-FG02-08ER46482 (Yale), the European Starting Grant program, and the Agence Nationale de la Recherche author: - first_name: Natalia full_name: Ares, Natalia last_name: Ares - first_name: Georgios full_name: Georgios Katsaros id: 38DB5788-F248-11E8-B48F-1D18A9856A87 last_name: Katsaros - first_name: Vitaly full_name: Golovach, Vitaly N last_name: Golovach - first_name: Jianjun full_name: Zhang, Jianjun last_name: Zhang - first_name: Aaron full_name: Prager, Aaron A last_name: Prager - first_name: Leonid full_name: Glazman, Leonid I last_name: Glazman - first_name: Oliver full_name: Schmidt, Oliver G last_name: Schmidt - first_name: Silvano full_name: De Franceschi, Silvano last_name: De Franceschi citation: ama: Ares N, Katsaros G, Golovach V, et al. SiGe quantum dots for fast hole spin Rabi oscillations. Applied Physics Letters. 2013;103(26). doi:10.1063/1.4858959 apa: Ares, N., Katsaros, G., Golovach, V., Zhang, J., Prager, A., Glazman, L., … De Franceschi, S. (2013). SiGe quantum dots for fast hole spin Rabi oscillations. Applied Physics Letters. American Institute of Physics. https://doi.org/10.1063/1.4858959 chicago: Ares, Natalia, Georgios Katsaros, Vitaly Golovach, Jianjun Zhang, Aaron Prager, Leonid Glazman, Oliver Schmidt, and Silvano De Franceschi. “SiGe Quantum Dots for Fast Hole Spin Rabi Oscillations.” Applied Physics Letters. American Institute of Physics, 2013. https://doi.org/10.1063/1.4858959. ieee: N. Ares et al., “SiGe quantum dots for fast hole spin Rabi oscillations,” Applied Physics Letters, vol. 103, no. 26. American Institute of Physics, 2013. ista: Ares N, Katsaros G, Golovach V, Zhang J, Prager A, Glazman L, Schmidt O, De Franceschi S. 2013. SiGe quantum dots for fast hole spin Rabi oscillations. Applied Physics Letters. 103(26). mla: Ares, Natalia, et al. “SiGe Quantum Dots for Fast Hole Spin Rabi Oscillations.” Applied Physics Letters, vol. 103, no. 26, American Institute of Physics, 2013, doi:10.1063/1.4858959. short: N. Ares, G. Katsaros, V. Golovach, J. Zhang, A. Prager, L. Glazman, O. Schmidt, S. De Franceschi, Applied Physics Letters 103 (2013). date_created: 2018-12-11T11:53:52Z date_published: 2013-01-23T00:00:00Z date_updated: 2021-01-12T06:53:02Z day: '23' doi: 10.1063/1.4858959 extern: 1 intvolume: ' 103' issue: '26' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1307.7196 month: '01' oa: 1 publication: Applied Physics Letters publication_status: published publisher: American Institute of Physics publist_id: '5364' quality_controlled: 0 status: public title: SiGe quantum dots for fast hole spin Rabi oscillations type: journal_article volume: 103 year: '2013' ... --- _id: '1759' abstract: - lang: eng text: We report an electric-field-induced giant modulation of the hole g factor in SiGe nanocrystals. The observed effect is ascribed to a so-far overlooked contribution to the g factor that stems from the mixing between heavy- and light-hole wave functions. We show that the relative displacement between the confined heavy- and light-hole states, occurring upon application of the electric field, alters their mixing strength leading to a strong nonmonotonic modulation of the g factor. acknowledgement: We acknowledge financial support from the Nanosciences Foundation (Grenoble, France), DOE under Contract No. DEFG02-08ER46482 (Yale), the Agence Nationale de la Recherche, and the European Starting Grant. G. K. acknowledges support from the European Commission via a Marie Curie Carrer Integration Grant and the FWF for a Lise-Meitner Fellowship author: - first_name: Natalia full_name: Ares, Natalia last_name: Ares - first_name: Vitaly full_name: Golovach, Vitaly N last_name: Golovach - first_name: Georgios full_name: Georgios Katsaros id: 38DB5788-F248-11E8-B48F-1D18A9856A87 last_name: Katsaros - first_name: Mathieu full_name: Stoffel, Mathieu last_name: Stoffel - first_name: Frank full_name: Fournel, Frank last_name: Fournel - first_name: Leonid full_name: Glazman, Leonid I last_name: Glazman - first_name: Oliver full_name: Schmidt, Oliver G last_name: Schmidt - first_name: Silvano full_name: De Franceschi, Silvano last_name: De Franceschi citation: ama: Ares N, Golovach V, Katsaros G, et al. Nature of tunable hole g factors in quantum dots. Physical Review Letters. 2013;110(4). doi:10.1103/PhysRevLett.110.046602 apa: Ares, N., Golovach, V., Katsaros, G., Stoffel, M., Fournel, F., Glazman, L., … De Franceschi, S. (2013). Nature of tunable hole g factors in quantum dots. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.110.046602 chicago: Ares, Natalia, Vitaly Golovach, Georgios Katsaros, Mathieu Stoffel, Frank Fournel, Leonid Glazman, Oliver Schmidt, and Silvano De Franceschi. “Nature of Tunable Hole g Factors in Quantum Dots.” Physical Review Letters. American Physical Society, 2013. https://doi.org/10.1103/PhysRevLett.110.046602. ieee: N. Ares et al., “Nature of tunable hole g factors in quantum dots,” Physical Review Letters, vol. 110, no. 4. American Physical Society, 2013. ista: Ares N, Golovach V, Katsaros G, Stoffel M, Fournel F, Glazman L, Schmidt O, De Franceschi S. 2013. Nature of tunable hole g factors in quantum dots. Physical Review Letters. 110(4). mla: Ares, Natalia, et al. “Nature of Tunable Hole g Factors in Quantum Dots.” Physical Review Letters, vol. 110, no. 4, American Physical Society, 2013, doi:10.1103/PhysRevLett.110.046602. short: N. Ares, V. Golovach, G. Katsaros, M. Stoffel, F. Fournel, L. Glazman, O. Schmidt, S. De Franceschi, Physical Review Letters 110 (2013). date_created: 2018-12-11T11:53:51Z date_published: 2013-01-23T00:00:00Z date_updated: 2021-01-12T06:53:01Z day: '23' doi: 10.1103/PhysRevLett.110.046602 extern: 1 intvolume: ' 110' issue: '4' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1208.0476 month: '01' oa: 1 publication: Physical Review Letters publication_status: published publisher: American Physical Society publist_id: '5365' quality_controlled: 0 status: public title: Nature of tunable hole g factors in quantum dots type: journal_article volume: 110 year: '2013' ... --- _id: '1785' abstract: - lang: eng text: The geometric aspects of quantum mechanics are emphasized most prominently by the concept of geometric phases, which are acquired whenever a quantum system evolves along a path in Hilbert space, that is, the space of quantum states of the system. The geometric phase is determined only by the shape of this path and is, in its simplest form, a real number. However, if the system has degenerate energy levels, then matrix-valued geometric state transformations, known as non-Abelian holonomies-the effect of which depends on the order of two consecutive paths-can be obtained. They are important, for example, for the creation of synthetic gauge fields in cold atomic gases or the description of non-Abelian anyon statistics. Moreover, there are proposals to exploit non-Abelian holonomic gates for the purposes of noise-resilient quantum computation. In contrast to Abelian geometric operations, non-Abelian ones have been observed only in nuclear quadrupole resonance experiments with a large number of spins, and without full characterization of the geometric process and its non-commutative nature. Here we realize non-Abelian non-adiabatic holonomic quantum operations on a single, superconducting, artificial three-level atom by applying a well-controlled, two-tone microwave drive. Using quantum process tomography, we determine fidelities of the resulting non-commuting gates that exceed 95 per cent. We show that two different quantum gates, originating from two distinct paths in Hilbert space, yield non-equivalent transformations when applied in different orders. This provides evidence for the non-Abelian character of the implemented holonomic quantum operations. In combination with a non-trivial two-quantum-bit gate, our method suggests a way to universal holonomic quantum computing. acknowledgement: This work is supported financially by GEOMDISS, the Swiss National Science Foundation and ETH Zurich author: - first_name: Abdufarrukh full_name: Abdumalikov, Abdufarrukh A last_name: Abdumalikov - first_name: Johannes M full_name: Johannes Fink id: 4B591CBA-F248-11E8-B48F-1D18A9856A87 last_name: Fink orcid: 0000-0001-8112-028X - first_name: K full_name: Juliusson, K last_name: Juliusson - first_name: M full_name: Pechal, M last_name: Pechal - first_name: Stefan full_name: Berger, Stefan T last_name: Berger - first_name: Andreas full_name: Wallraff, Andreas last_name: Wallraff - first_name: Stefan full_name: Filipp, Stefan last_name: Filipp citation: ama: Abdumalikov A, Fink JM, Juliusson K, et al. Experimental realization of non-Abelian non-adiabatic geometric gates. Nature. 2013;496(7446):482-485. doi:10.1038/nature12010 apa: Abdumalikov, A., Fink, J. M., Juliusson, K., Pechal, M., Berger, S., Wallraff, A., & Filipp, S. (2013). Experimental realization of non-Abelian non-adiabatic geometric gates. Nature. Nature Publishing Group. https://doi.org/10.1038/nature12010 chicago: Abdumalikov, Abdufarrukh, Johannes M Fink, K Juliusson, M Pechal, Stefan Berger, Andreas Wallraff, and Stefan Filipp. “Experimental Realization of Non-Abelian Non-Adiabatic Geometric Gates.” Nature. Nature Publishing Group, 2013. https://doi.org/10.1038/nature12010. ieee: A. Abdumalikov et al., “Experimental realization of non-Abelian non-adiabatic geometric gates,” Nature, vol. 496, no. 7446. Nature Publishing Group, pp. 482–485, 2013. ista: Abdumalikov A, Fink JM, Juliusson K, Pechal M, Berger S, Wallraff A, Filipp S. 2013. Experimental realization of non-Abelian non-adiabatic geometric gates. Nature. 496(7446), 482–485. mla: Abdumalikov, Abdufarrukh, et al. “Experimental Realization of Non-Abelian Non-Adiabatic Geometric Gates.” Nature, vol. 496, no. 7446, Nature Publishing Group, 2013, pp. 482–85, doi:10.1038/nature12010. short: A. Abdumalikov, J.M. Fink, K. Juliusson, M. Pechal, S. Berger, A. Wallraff, S. Filipp, Nature 496 (2013) 482–485. date_created: 2018-12-11T11:54:00Z date_published: 2013-04-25T00:00:00Z date_updated: 2021-01-12T06:53:11Z day: '25' doi: 10.1038/nature12010 extern: 1 intvolume: ' 496' issue: '7446' month: '04' page: 482 - 485 publication: Nature publication_status: published publisher: Nature Publishing Group publist_id: '5329' quality_controlled: 0 status: public title: Experimental realization of non-Abelian non-adiabatic geometric gates type: journal_article volume: 496 year: '2013' ...