---
_id: '10328'
abstract:
- lang: eng
text: We discus noise channels in coherent electro-optic up-conversion between microwave
and optical fields, in particular due to optical heating. We also report on a
novel configuration, which promises to be flexible and highly efficient.
alternative_title:
- OSA Technical Digest
article_number: QTu8A.1
article_processing_charge: No
author:
- first_name: Nicholas J.
full_name: Lambert, Nicholas J.
last_name: Lambert
- first_name: Sonia
full_name: Mobassem, Sonia
last_name: Mobassem
- first_name: Alfredo R
full_name: Rueda Sanchez, Alfredo R
id: 3B82B0F8-F248-11E8-B48F-1D18A9856A87
last_name: Rueda Sanchez
orcid: 0000-0001-6249-5860
- first_name: Harald G.L.
full_name: Schwefel, Harald G.L.
last_name: Schwefel
citation:
ama: 'Lambert NJ, Mobassem S, Rueda Sanchez AR, Schwefel HGL. New designs and noise
channels in electro-optic microwave to optical up-conversion. In: OSA Quantum
2.0 Conference. Optica Publishing Group; 2020. doi:10.1364/QUANTUM.2020.QTu8A.1'
apa: 'Lambert, N. J., Mobassem, S., Rueda Sanchez, A. R., & Schwefel, H. G.
L. (2020). New designs and noise channels in electro-optic microwave to optical
up-conversion. In OSA Quantum 2.0 Conference. Washington, DC, United States:
Optica Publishing Group. https://doi.org/10.1364/QUANTUM.2020.QTu8A.1'
chicago: Lambert, Nicholas J., Sonia Mobassem, Alfredo R Rueda Sanchez, and Harald
G.L. Schwefel. “New Designs and Noise Channels in Electro-Optic Microwave to Optical
up-Conversion.” In OSA Quantum 2.0 Conference. Optica Publishing Group,
2020. https://doi.org/10.1364/QUANTUM.2020.QTu8A.1.
ieee: N. J. Lambert, S. Mobassem, A. R. Rueda Sanchez, and H. G. L. Schwefel, “New
designs and noise channels in electro-optic microwave to optical up-conversion,”
in OSA Quantum 2.0 Conference, Washington, DC, United States, 2020.
ista: 'Lambert NJ, Mobassem S, Rueda Sanchez AR, Schwefel HGL. 2020. New designs
and noise channels in electro-optic microwave to optical up-conversion. OSA Quantum
2.0 Conference. OSA: Optical Society of America, OSA Technical Digest, , QTu8A.1.'
mla: Lambert, Nicholas J., et al. “New Designs and Noise Channels in Electro-Optic
Microwave to Optical up-Conversion.” OSA Quantum 2.0 Conference, QTu8A.1,
Optica Publishing Group, 2020, doi:10.1364/QUANTUM.2020.QTu8A.1.
short: N.J. Lambert, S. Mobassem, A.R. Rueda Sanchez, H.G.L. Schwefel, in:, OSA
Quantum 2.0 Conference, Optica Publishing Group, 2020.
conference:
end_date: 2020-09-17
location: Washington, DC, United States
name: 'OSA: Optical Society of America'
start_date: 2020-09-14
date_created: 2021-11-21T23:01:31Z
date_published: 2020-01-01T00:00:00Z
date_updated: 2023-10-18T08:32:34Z
day: '01'
department:
- _id: JoFi
doi: 10.1364/QUANTUM.2020.QTu8A.1
language:
- iso: eng
month: '01'
oa_version: None
publication: OSA Quantum 2.0 Conference
publication_identifier:
isbn:
- 9-781-5575-2820-9
publication_status: published
publisher: Optica Publishing Group
quality_controlled: '1'
scopus_import: '1'
status: public
title: New designs and noise channels in electro-optic microwave to optical up-conversion
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '9633'
abstract:
- lang: eng
text: The search for biologically faithful synaptic plasticity rules has resulted
in a large body of models. They are usually inspired by – and fitted to – experimental
data, but they rarely produce neural dynamics that serve complex functions. These
failures suggest that current plasticity models are still under-constrained by
existing data. Here, we present an alternative approach that uses meta-learning
to discover plausible synaptic plasticity rules. Instead of experimental data,
the rules are constrained by the functions they implement and the structure they
are meant to produce. Briefly, we parameterize synaptic plasticity rules by a
Volterra expansion and then use supervised learning methods (gradient descent
or evolutionary strategies) to minimize a problem-dependent loss function that
quantifies how effectively a candidate plasticity rule transforms an initially
random network into one with the desired function. We first validate our approach
by re-discovering previously described plasticity rules, starting at the single-neuron
level and “Oja’s rule”, a simple Hebbian plasticity rule that captures the direction
of most variability of inputs to a neuron (i.e., the first principal component).
We expand the problem to the network level and ask the framework to find Oja’s
rule together with an anti-Hebbian rule such that an initially random two-layer
firing-rate network will recover several principal components of the input space
after learning. Next, we move to networks of integrate-and-fire neurons with plastic
inhibitory afferents. We train for rules that achieve a target firing rate by
countering tuned excitation. Our algorithm discovers a specific subset of the
manifold of rules that can solve this task. Our work is a proof of principle of
an automated and unbiased approach to unveil synaptic plasticity rules that obey
biological constraints and can solve complex functions.
acknowledgement: We would like to thank Chaitanya Chintaluri, Georgia Christodoulou,
Bill Podlaski and Merima Šabanovic for useful discussions and comments. This work
was supported by a Wellcome Trust ´ Senior Research Fellowship (214316/Z/18/Z),
a BBSRC grant (BB/N019512/1), an ERC consolidator Grant (SYNAPSEEK), a Leverhulme
Trust Project Grant (RPG-2016-446), and funding from École Polytechnique, Paris.
article_processing_charge: No
author:
- first_name: Basile J
full_name: Confavreux, Basile J
id: C7610134-B532-11EA-BD9F-F5753DDC885E
last_name: Confavreux
- first_name: Friedemann
full_name: Zenke, Friedemann
last_name: Zenke
- first_name: Everton J.
full_name: Agnes, Everton J.
last_name: Agnes
- first_name: Timothy
full_name: Lillicrap, Timothy
last_name: Lillicrap
- first_name: Tim P
full_name: Vogels, Tim P
id: CB6FF8D2-008F-11EA-8E08-2637E6697425
last_name: Vogels
orcid: 0000-0003-3295-6181
citation:
ama: 'Confavreux BJ, Zenke F, Agnes EJ, Lillicrap T, Vogels TP. A meta-learning
approach to (re)discover plasticity rules that carve a desired function into a
neural network. In: Advances in Neural Information Processing Systems.
Vol 33. ; 2020:16398-16408.'
apa: Confavreux, B. J., Zenke, F., Agnes, E. J., Lillicrap, T., & Vogels, T.
P. (2020). A meta-learning approach to (re)discover plasticity rules that carve
a desired function into a neural network. In Advances in Neural Information
Processing Systems (Vol. 33, pp. 16398–16408). Vancouver, Canada.
chicago: Confavreux, Basile J, Friedemann Zenke, Everton J. Agnes, Timothy Lillicrap,
and Tim P Vogels. “A Meta-Learning Approach to (Re)Discover Plasticity Rules That
Carve a Desired Function into a Neural Network.” In Advances in Neural Information
Processing Systems, 33:16398–408, 2020.
ieee: B. J. Confavreux, F. Zenke, E. J. Agnes, T. Lillicrap, and T. P. Vogels, “A
meta-learning approach to (re)discover plasticity rules that carve a desired function
into a neural network,” in Advances in Neural Information Processing Systems,
Vancouver, Canada, 2020, vol. 33, pp. 16398–16408.
ista: 'Confavreux BJ, Zenke F, Agnes EJ, Lillicrap T, Vogels TP. 2020. A meta-learning
approach to (re)discover plasticity rules that carve a desired function into a
neural network. Advances in Neural Information Processing Systems. NeurIPS: Conference
on Neural Information Processing Systems vol. 33, 16398–16408.'
mla: Confavreux, Basile J., et al. “A Meta-Learning Approach to (Re)Discover Plasticity
Rules That Carve a Desired Function into a Neural Network.” Advances in Neural
Information Processing Systems, vol. 33, 2020, pp. 16398–408.
short: B.J. Confavreux, F. Zenke, E.J. Agnes, T. Lillicrap, T.P. Vogels, in:, Advances
in Neural Information Processing Systems, 2020, pp. 16398–16408.
conference:
end_date: 2020-12-12
location: Vancouver, Canada
name: 'NeurIPS: Conference on Neural Information Processing Systems'
start_date: 2020-12-06
date_created: 2021-07-04T22:01:27Z
date_published: 2020-12-06T00:00:00Z
date_updated: 2023-10-18T09:20:55Z
day: '06'
department:
- _id: TiVo
ec_funded: 1
intvolume: ' 33'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://proceedings.neurips.cc/paper/2020/hash/bdbd5ebfde4934142c8a88e7a3796cd5-Abstract.html
month: '12'
oa: 1
oa_version: Published Version
page: 16398-16408
project:
- _id: c084a126-5a5b-11eb-8a69-d75314a70a87
grant_number: 214316/Z/18/Z
name: What’s in a memory? Spatiotemporal dynamics in strongly coupled recurrent
neuronal networks.
- _id: 0aacfa84-070f-11eb-9043-d7eb2c709234
call_identifier: H2020
grant_number: '819603'
name: Learning the shape of synaptic plasticity rules for neuronal architectures
and function through machine learning.
publication: Advances in Neural Information Processing Systems
publication_identifier:
issn:
- 1049-5258
publication_status: published
quality_controlled: '1'
related_material:
link:
- relation: is_continued_by
url: https://doi.org/10.1101/2020.10.24.353409
record:
- id: '14422'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: A meta-learning approach to (re)discover plasticity rules that carve a desired
function into a neural network
type: conference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 33
year: '2020'
...
---
_id: '8943'
abstract:
- lang: eng
text: The widely used non-steroidal anti-inflammatory drugs (NSAIDs) are derivatives
of the phytohormone salicylic acid (SA). SA is well known to regulate plant immunity
and development, whereas there have been few reports focusing on the effects of
NSAIDs in plants. Our studies here reveal that NSAIDs exhibit largely overlapping
physiological activities to SA in the model plant Arabidopsis. NSAID treatments
lead to shorter and agravitropic primary roots and inhibited lateral root organogenesis.
Notably, in addition to the SA-like action, which in roots involves binding to
the protein phosphatase 2A (PP2A), NSAIDs also exhibit PP2A-independent effects.
Cell biological and biochemical analyses reveal that many NSAIDs bind directly
to and inhibit the chaperone activity of TWISTED DWARF1, thereby regulating actin
cytoskeleton dynamics and subsequent endosomal trafficking. Our findings uncover
an unexpected bioactivity of human pharmaceuticals in plants and provide insights
into the molecular mechanism underlying the cellular action of this class of anti-inflammatory
compounds.
acknowledged_ssus:
- _id: LifeSc
- _id: Bio
acknowledgement: "We thank Drs. Sebastian Bednarek (University of Wisconsin-Madison),
Niko Geldner (University of Lausanne), and Karin Schumacher (Heidelberg University)
for kindly sharing published Arabidopsis lines; Dr. Satoshi Naramoto for the pPIN2::PIN2-GFP;
pVHA-a1::VHA-a1-mRFP reporter; the staff at the Life Science Facility and Bioimaging
Facility, Monika Hrtyan, and Dorota Jaworska at IST Austria for technical support;
and Drs. Su Tang (Texas A&M University),\r\nMelinda Abas (BOKU), Eva Benkova´ (IST
Austria), Christian Luschnig (BOKU), Bartel Vanholme (Gent University), and the
Friml group for valuable discussions. The research leading to these findings was
funded by the European Union’s Horizon 2020 program (ERC grant agreement no. 742985,
to J.F.), the People Programme (Marie Curie Actions) of the European Union’s Seventh
Framework Programme (FP7/2007-2013) under REA grant agreement no.\r\n291734, the
Swiss National Funds (31003A_165877, to M.G.), the Ministry of Education, Youth,
and Sports of the Czech Republic (project no. CZ.02.1.01/0.0/0.0/16_019/0000738,
EU Operational Programme ‘‘Research, development and education and Centre for Plant
Experimental Biology’’), and the EU Operational Programme Prague - Competitiveness
(project no. CZ.2.16/3.1.00/21519). S.T. was funded by a European Molecular Biology
Organization (EMBO) long-term postdoctoral fellowship (ALTF 723-2015). X.Z. was
partly supported by a PhD scholarship from the China Scholarship Council."
article_number: '108463'
article_processing_charge: Yes
article_type: original
author:
- first_name: Shutang
full_name: Tan, Shutang
id: 2DE75584-F248-11E8-B48F-1D18A9856A87
last_name: Tan
orcid: 0000-0002-0471-8285
- first_name: Martin
full_name: Di Donato, Martin
last_name: Di Donato
- first_name: Matous
full_name: Glanc, Matous
id: 1AE1EA24-02D0-11E9-9BAA-DAF4881429F2
last_name: Glanc
orcid: 0000-0003-0619-7783
- first_name: Xixi
full_name: Zhang, Xixi
id: 61A66458-47E9-11EA-85BA-8AEAAF14E49A
last_name: Zhang
orcid: 0000-0001-7048-4627
- first_name: Petr
full_name: Klíma, Petr
last_name: Klíma
- first_name: Jie
full_name: Liu, Jie
last_name: Liu
- first_name: Aurélien
full_name: Bailly, Aurélien
last_name: Bailly
- first_name: Noel
full_name: Ferro, Noel
last_name: Ferro
- first_name: Jan
full_name: Petrášek, Jan
last_name: Petrášek
- first_name: Markus
full_name: Geisler, Markus
last_name: Geisler
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Tan S, Di Donato M, Glanc M, et al. Non-steroidal anti-inflammatory drugs target
TWISTED DWARF1-regulated actin dynamics and auxin transport-mediated plant development.
Cell Reports. 2020;33(9). doi:10.1016/j.celrep.2020.108463
apa: Tan, S., Di Donato, M., Glanc, M., Zhang, X., Klíma, P., Liu, J., … Friml,
J. (2020). Non-steroidal anti-inflammatory drugs target TWISTED DWARF1-regulated
actin dynamics and auxin transport-mediated plant development. Cell Reports.
Elsevier. https://doi.org/10.1016/j.celrep.2020.108463
chicago: Tan, Shutang, Martin Di Donato, Matous Glanc, Xixi Zhang, Petr Klíma, Jie
Liu, Aurélien Bailly, et al. “Non-Steroidal Anti-Inflammatory Drugs Target TWISTED
DWARF1-Regulated Actin Dynamics and Auxin Transport-Mediated Plant Development.”
Cell Reports. Elsevier, 2020. https://doi.org/10.1016/j.celrep.2020.108463.
ieee: S. Tan et al., “Non-steroidal anti-inflammatory drugs target TWISTED
DWARF1-regulated actin dynamics and auxin transport-mediated plant development,”
Cell Reports, vol. 33, no. 9. Elsevier, 2020.
ista: Tan S, Di Donato M, Glanc M, Zhang X, Klíma P, Liu J, Bailly A, Ferro N, Petrášek
J, Geisler M, Friml J. 2020. Non-steroidal anti-inflammatory drugs target TWISTED
DWARF1-regulated actin dynamics and auxin transport-mediated plant development.
Cell Reports. 33(9), 108463.
mla: Tan, Shutang, et al. “Non-Steroidal Anti-Inflammatory Drugs Target TWISTED
DWARF1-Regulated Actin Dynamics and Auxin Transport-Mediated Plant Development.”
Cell Reports, vol. 33, no. 9, 108463, Elsevier, 2020, doi:10.1016/j.celrep.2020.108463.
short: S. Tan, M. Di Donato, M. Glanc, X. Zhang, P. Klíma, J. Liu, A. Bailly, N.
Ferro, J. Petrášek, M. Geisler, J. Friml, Cell Reports 33 (2020).
date_created: 2020-12-13T23:01:21Z
date_published: 2020-12-01T00:00:00Z
date_updated: 2023-11-16T13:03:31Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1016/j.celrep.2020.108463
ec_funded: 1
external_id:
isi:
- '000595658100018'
pmid:
- '33264621'
file:
- access_level: open_access
checksum: ed18cba0fb48ed2e789381a54cc21904
content_type: application/pdf
creator: dernst
date_created: 2020-12-14T07:33:39Z
date_updated: 2020-12-14T07:33:39Z
file_id: '8948'
file_name: 2020_CellReports_Tan.pdf
file_size: 8056434
relation: main_file
success: 1
file_date_updated: 2020-12-14T07:33:39Z
has_accepted_license: '1'
intvolume: ' 33'
isi: 1
issue: '9'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '742985'
name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
- _id: 256FEF10-B435-11E9-9278-68D0E5697425
grant_number: 723-2015
name: Long Term Fellowship
publication: Cell Reports
publication_identifier:
eissn:
- '22111247'
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
link:
- description: News on IST Homepage
relation: press_release
url: https://ist.ac.at/en/news/plants-on-aspirin/
scopus_import: '1'
status: public
title: Non-steroidal anti-inflammatory drugs target TWISTED DWARF1-regulated actin
dynamics and auxin transport-mediated plant development
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 33
year: '2020'
...
---
_id: '7932'
abstract:
- lang: eng
text: Pulsating flows through tubular geometries are laminar provided that velocities
are moderate. This in particular is also believed to apply to cardiovascular flows
where inertial forces are typically too low to sustain turbulence. On the other
hand, flow instabilities and fluctuating shear stresses are held responsible for
a variety of cardiovascular diseases. Here we report a nonlinear instability mechanism
for pulsating pipe flow that gives rise to bursts of turbulence at low flow rates.
Geometrical distortions of small, yet finite, amplitude are found to excite a
state consisting of helical vortices during flow deceleration. The resulting flow
pattern grows rapidly in magnitude, breaks down into turbulence, and eventually
returns to laminar when the flow accelerates. This scenario causes shear stress
fluctuations and flow reversal during each pulsation cycle. Such unsteady conditions
can adversely affect blood vessels and have been shown to promote inflammation
and dysfunction of the shear stress-sensitive endothelial cell layer.
article_processing_charge: No
article_type: original
author:
- first_name: Duo
full_name: Xu, Duo
id: 3454D55E-F248-11E8-B48F-1D18A9856A87
last_name: Xu
- first_name: Atul
full_name: Varshney, Atul
id: 2A2006B2-F248-11E8-B48F-1D18A9856A87
last_name: Varshney
orcid: 0000-0002-3072-5999
- first_name: Xingyu
full_name: Ma, Xingyu
id: 34BADBA6-F248-11E8-B48F-1D18A9856A87
last_name: Ma
orcid: 0000-0002-0179-9737
- first_name: Baofang
full_name: Song, Baofang
last_name: Song
- first_name: Michael
full_name: Riedl, Michael
id: 3BE60946-F248-11E8-B48F-1D18A9856A87
last_name: Riedl
orcid: 0000-0003-4844-6311
- first_name: Marc
full_name: Avila, Marc
last_name: Avila
- first_name: Björn
full_name: Hof, Björn
id: 3A374330-F248-11E8-B48F-1D18A9856A87
last_name: Hof
orcid: 0000-0003-2057-2754
citation:
ama: Xu D, Varshney A, Ma X, et al. Nonlinear hydrodynamic instability and turbulence
in pulsatile flow. Proceedings of the National Academy of Sciences of the United
States of America. 2020;117(21):11233-11239. doi:10.1073/pnas.1913716117
apa: Xu, D., Varshney, A., Ma, X., Song, B., Riedl, M., Avila, M., & Hof, B.
(2020). Nonlinear hydrodynamic instability and turbulence in pulsatile flow. Proceedings
of the National Academy of Sciences of the United States of America. National
Academy of Sciences. https://doi.org/10.1073/pnas.1913716117
chicago: Xu, Duo, Atul Varshney, Xingyu Ma, Baofang Song, Michael Riedl, Marc Avila,
and Björn Hof. “Nonlinear Hydrodynamic Instability and Turbulence in Pulsatile
Flow.” Proceedings of the National Academy of Sciences of the United States
of America. National Academy of Sciences, 2020. https://doi.org/10.1073/pnas.1913716117.
ieee: D. Xu et al., “Nonlinear hydrodynamic instability and turbulence in
pulsatile flow,” Proceedings of the National Academy of Sciences of the United
States of America, vol. 117, no. 21. National Academy of Sciences, pp. 11233–11239,
2020.
ista: Xu D, Varshney A, Ma X, Song B, Riedl M, Avila M, Hof B. 2020. Nonlinear hydrodynamic
instability and turbulence in pulsatile flow. Proceedings of the National Academy
of Sciences of the United States of America. 117(21), 11233–11239.
mla: Xu, Duo, et al. “Nonlinear Hydrodynamic Instability and Turbulence in Pulsatile
Flow.” Proceedings of the National Academy of Sciences of the United States
of America, vol. 117, no. 21, National Academy of Sciences, 2020, pp. 11233–39,
doi:10.1073/pnas.1913716117.
short: D. Xu, A. Varshney, X. Ma, B. Song, M. Riedl, M. Avila, B. Hof, Proceedings
of the National Academy of Sciences of the United States of America 117 (2020)
11233–11239.
date_created: 2020-06-07T22:00:51Z
date_published: 2020-05-26T00:00:00Z
date_updated: 2023-11-30T10:55:13Z
day: '26'
department:
- _id: BjHo
doi: 10.1073/pnas.1913716117
ec_funded: 1
external_id:
arxiv:
- '2005.11190'
isi:
- '000536797100014'
intvolume: ' 117'
isi: 1
issue: '21'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2005.11190
month: '05'
oa: 1
oa_version: Preprint
page: 11233-11239
project:
- _id: 238B8092-32DE-11EA-91FC-C7463DDC885E
call_identifier: FWF
grant_number: I04188
name: Instabilities in pulsating pipe flow of Newtonian and complex fluids
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Proceedings of the National Academy of Sciences of the United States
of America
publication_identifier:
eissn:
- '10916490'
issn:
- '00278424'
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
related_material:
link:
- description: News on IST Homepage
relation: press_release
url: https://ist.ac.at/en/news/blood-flows-more-turbulent-than-previously-expected/
record:
- id: '12726'
relation: dissertation_contains
status: public
- id: '14530'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Nonlinear hydrodynamic instability and turbulence in pulsatile flow
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 117
year: '2020'
...
---
_id: '14694'
abstract:
- lang: eng
text: We study the unique solution m of the Dyson equation \( -m(z)^{-1} = z\1 -
a + S[m(z)] \) on a von Neumann algebra A with the constraint Imm≥0. Here, z lies
in the complex upper half-plane, a is a self-adjoint element of A and S is a positivity-preserving
linear operator on A. We show that m is the Stieltjes transform of a compactly
supported A-valued measure on R. Under suitable assumptions, we establish that
this measure has a uniformly 1/3-Hölder continuous density with respect to the
Lebesgue measure, which is supported on finitely many intervals, called bands.
In fact, the density is analytic inside the bands with a square-root growth at
the edges and internal cubic root cusps whenever the gap between two bands vanishes.
The shape of these singularities is universal and no other singularity may occur.
We give a precise asymptotic description of m near the singular points. These
asymptotics generalize the analysis at the regular edges given in the companion
paper on the Tracy-Widom universality for the edge eigenvalue statistics for correlated
random matrices [the first author et al., Ann. Probab. 48, No. 2, 963--1001 (2020;
Zbl 1434.60017)] and they play a key role in the proof of the Pearcey universality
at the cusp for Wigner-type matrices [G. Cipolloni et al., Pure Appl. Anal. 1,
No. 4, 615--707 (2019; Zbl 07142203); the second author et al., Commun. Math.
Phys. 378, No. 2, 1203--1278 (2020; Zbl 07236118)]. We also extend the finite
dimensional band mass formula from [the first author et al., loc. cit.] to the
von Neumann algebra setting by showing that the spectral mass of the bands is
topologically rigid under deformations and we conclude that these masses are quantized
in some important cases.
article_processing_charge: Yes
article_type: original
author:
- first_name: Johannes
full_name: Alt, Johannes
id: 36D3D8B6-F248-11E8-B48F-1D18A9856A87
last_name: Alt
- first_name: László
full_name: Erdös, László
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
- first_name: Torben H
full_name: Krüger, Torben H
id: 3020C786-F248-11E8-B48F-1D18A9856A87
last_name: Krüger
orcid: 0000-0002-4821-3297
citation:
ama: 'Alt J, Erdös L, Krüger TH. The Dyson equation with linear self-energy: Spectral
bands, edges and cusps. Documenta Mathematica. 2020;25:1421-1539. doi:10.4171/dm/780'
apa: 'Alt, J., Erdös, L., & Krüger, T. H. (2020). The Dyson equation with linear
self-energy: Spectral bands, edges and cusps. Documenta Mathematica. EMS
Press. https://doi.org/10.4171/dm/780'
chicago: 'Alt, Johannes, László Erdös, and Torben H Krüger. “The Dyson Equation
with Linear Self-Energy: Spectral Bands, Edges and Cusps.” Documenta Mathematica.
EMS Press, 2020. https://doi.org/10.4171/dm/780.'
ieee: 'J. Alt, L. Erdös, and T. H. Krüger, “The Dyson equation with linear self-energy:
Spectral bands, edges and cusps,” Documenta Mathematica, vol. 25. EMS Press,
pp. 1421–1539, 2020.'
ista: 'Alt J, Erdös L, Krüger TH. 2020. The Dyson equation with linear self-energy:
Spectral bands, edges and cusps. Documenta Mathematica. 25, 1421–1539.'
mla: 'Alt, Johannes, et al. “The Dyson Equation with Linear Self-Energy: Spectral
Bands, Edges and Cusps.” Documenta Mathematica, vol. 25, EMS Press, 2020,
pp. 1421–539, doi:10.4171/dm/780.'
short: J. Alt, L. Erdös, T.H. Krüger, Documenta Mathematica 25 (2020) 1421–1539.
date_created: 2023-12-18T10:37:43Z
date_published: 2020-09-01T00:00:00Z
date_updated: 2023-12-18T10:46:09Z
day: '01'
ddc:
- '510'
department:
- _id: LaEr
doi: 10.4171/dm/780
external_id:
arxiv:
- '1804.07752'
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creator: dernst
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date_updated: 2023-12-18T10:42:32Z
file_id: '14695'
file_name: 2020_DocumentaMathematica_Alt.pdf
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has_accepted_license: '1'
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keyword:
- General Mathematics
language:
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month: '09'
oa: 1
oa_version: Published Version
page: 1421-1539
publication: Documenta Mathematica
publication_identifier:
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issn:
- 1431-0635
publication_status: published
publisher: EMS Press
quality_controlled: '1'
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status: public
title: 'The Dyson equation with linear self-energy: Spectral bands, edges and cusps'
tmp:
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name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
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type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 25
year: '2020'
...
---
_id: '8156'
abstract:
- lang: eng
text: 'We present solutions to several problems originating from geometry and discrete
mathematics: existence of equipartitions, maps without Tverberg multiple points,
and inscribing quadrilaterals. Equivariant obstruction theory is the natural topological
approach to these type of questions. However, for the specific problems we consider
it had yielded only partial or no results. We get our results by complementing
equivariant obstruction theory with other techniques from topology and geometry.'
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Sergey
full_name: Avvakumov, Sergey
id: 3827DAC8-F248-11E8-B48F-1D18A9856A87
last_name: Avvakumov
citation:
ama: Avvakumov S. Topological methods in geometry and discrete mathematics. 2020.
doi:10.15479/AT:ISTA:8156
apa: Avvakumov, S. (2020). Topological methods in geometry and discrete mathematics.
Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:8156
chicago: Avvakumov, Sergey. “Topological Methods in Geometry and Discrete Mathematics.”
Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:8156.
ieee: S. Avvakumov, “Topological methods in geometry and discrete mathematics,”
Institute of Science and Technology Austria, 2020.
ista: Avvakumov S. 2020. Topological methods in geometry and discrete mathematics.
Institute of Science and Technology Austria.
mla: Avvakumov, Sergey. Topological Methods in Geometry and Discrete Mathematics.
Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:8156.
short: S. Avvakumov, Topological Methods in Geometry and Discrete Mathematics, Institute
of Science and Technology Austria, 2020.
date_created: 2020-07-23T09:51:29Z
date_published: 2020-07-24T00:00:00Z
date_updated: 2023-12-18T10:51:01Z
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ddc:
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department:
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doi: 10.15479/AT:ISTA:8156
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publication_identifier:
issn:
- 2663-337X
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publisher: Institute of Science and Technology Austria
related_material:
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relation: part_of_dissertation
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- id: '8184'
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relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Uli
full_name: Wagner, Uli
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
title: Topological methods in geometry and discrete mathematics
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2020'
...
---
_id: '14891'
abstract:
- lang: eng
text: We give the first mathematically rigorous justification of the local density
approximation in density functional theory. We provide a quantitative estimate
on the difference between the grand-canonical Levy–Lieb energy of a given density
(the lowest possible energy of all quantum states having this density) and the
integral over the uniform electron gas energy of this density. The error involves
gradient terms and justifies the use of the local density approximation in the
situation where the density is very flat on sufficiently large regions in space.
article_processing_charge: No
article_type: original
author:
- first_name: Mathieu
full_name: Lewin, Mathieu
last_name: Lewin
- first_name: Elliott H.
full_name: Lieb, Elliott H.
last_name: Lieb
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Lewin M, Lieb EH, Seiringer R. The local density approximation in density
functional theory. Pure and Applied Analysis. 2020;2(1):35-73. doi:10.2140/paa.2020.2.35
apa: Lewin, M., Lieb, E. H., & Seiringer, R. (2020). The local density approximation
in density functional theory. Pure and Applied Analysis. Mathematical Sciences
Publishers. https://doi.org/10.2140/paa.2020.2.35
chicago: Lewin, Mathieu, Elliott H. Lieb, and Robert Seiringer. “ The Local Density
Approximation in Density Functional Theory.” Pure and Applied Analysis.
Mathematical Sciences Publishers, 2020. https://doi.org/10.2140/paa.2020.2.35.
ieee: M. Lewin, E. H. Lieb, and R. Seiringer, “ The local density approximation
in density functional theory,” Pure and Applied Analysis, vol. 2, no. 1.
Mathematical Sciences Publishers, pp. 35–73, 2020.
ista: Lewin M, Lieb EH, Seiringer R. 2020. The local density approximation in density
functional theory. Pure and Applied Analysis. 2(1), 35–73.
mla: Lewin, Mathieu, et al. “ The Local Density Approximation in Density Functional
Theory.” Pure and Applied Analysis, vol. 2, no. 1, Mathematical Sciences
Publishers, 2020, pp. 35–73, doi:10.2140/paa.2020.2.35.
short: M. Lewin, E.H. Lieb, R. Seiringer, Pure and Applied Analysis 2 (2020) 35–73.
date_created: 2024-01-28T23:01:44Z
date_published: 2020-01-01T00:00:00Z
date_updated: 2024-01-29T09:01:12Z
day: '01'
department:
- _id: RoSe
doi: 10.2140/paa.2020.2.35
external_id:
arxiv:
- '1903.04046'
intvolume: ' 2'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.1903.04046
month: '01'
oa: 1
oa_version: Preprint
page: 35-73
publication: Pure and Applied Analysis
publication_identifier:
eissn:
- 2578-5885
issn:
- 2578-5893
publication_status: published
publisher: Mathematical Sciences Publishers
quality_controlled: '1'
scopus_import: '1'
status: public
title: ' The local density approximation in density functional theory'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2020'
...
---
_id: '8914'
abstract:
- lang: eng
text: Amyotrophic lateral sclerosis (ALS) leads to a loss of specific motor neuron
populations in the spinal cord and cortex. Emerging evidence suggests that interneurons
may also be affected, but a detailed characterization of interneuron loss and
its potential impacts on motor neuron loss and disease progression is lacking.
To examine this issue, the fate of V1 inhibitory neurons during ALS was assessed
in the ventral spinal cord using the SODG93A mouse model. The V1 population makes
up ∼30% of all ventral inhibitory neurons, ∼50% of direct inhibitory synaptic
contacts onto motor neuron cell bodies, and is thought to play a key role in modulating
motor output, in part through recurrent and reciprocal inhibitory circuits. We
find that approximately half of V1 inhibitory neurons are lost in SODG93A mice
at late disease stages, but that this loss is delayed relative to the loss of
motor neurons and V2a excitatory neurons. We further identify V1 subpopulations
based on transcription factor expression that are differentially susceptible to
degeneration in SODG93A mice. At an early disease stage, we show that V1 synaptic
contacts with motor neuron cell bodies increase, suggesting an upregulation of
inhibition before V1 neurons are lost in substantial numbers. These data support
a model in which progressive changes in V1 synaptic contacts early in disease,
and in select V1 subpopulations at later stages, represent a compensatory upregulation
and then deleterious breakdown of specific interneuron circuits within the spinal
cord.
acknowledgement: This work was made possible by the generous support of Project ALS.
Imaging and related analyses were facilitated by The Waitt Advanced Biophotonics
Center Core at the Salk Institute, supported by grants from NIH-NCI CCSG (P30 014195)
and NINDS Neuroscience Center (NS072031). The authors would like to additionally
thank Drs. Jane Dodd, Robert Brownstone, and Laskaro Zagoraiou for helpful comments
on the manuscript. This manuscript is dedicated to Tom Jessell, an inspirational
scientist, friend and mentor.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Alina
full_name: Salamatina, Alina
last_name: Salamatina
- first_name: Jerry H
full_name: Yang, Jerry H
last_name: Yang
- first_name: Susan
full_name: Brenner-Morton, Susan
last_name: Brenner-Morton
- first_name: 'Jay B '
full_name: 'Bikoff, Jay B '
last_name: Bikoff
- first_name: Linjing
full_name: Fang, Linjing
last_name: Fang
- first_name: Christopher R
full_name: Kintner, Christopher R
last_name: Kintner
- first_name: Thomas M
full_name: Jessell, Thomas M
last_name: Jessell
- first_name: Lora Beatrice Jaeger
full_name: Sweeney, Lora Beatrice Jaeger
id: 56BE8254-C4F0-11E9-8E45-0B23E6697425
last_name: Sweeney
orcid: 0000-0001-9242-5601
citation:
ama: Salamatina A, Yang JH, Brenner-Morton S, et al. Differential loss of spinal
interneurons in a mouse model of ALS. Neuroscience. 2020;450:81-95. doi:10.1016/j.neuroscience.2020.08.011
apa: Salamatina, A., Yang, J. H., Brenner-Morton, S., Bikoff, J. B., Fang, L., Kintner,
C. R., … Sweeney, L. B. (2020). Differential loss of spinal interneurons in a
mouse model of ALS. Neuroscience. Elsevier. https://doi.org/10.1016/j.neuroscience.2020.08.011
chicago: Salamatina, Alina, Jerry H Yang, Susan Brenner-Morton, Jay B Bikoff, Linjing
Fang, Christopher R Kintner, Thomas M Jessell, and Lora B. Sweeney. “Differential
Loss of Spinal Interneurons in a Mouse Model of ALS.” Neuroscience. Elsevier,
2020. https://doi.org/10.1016/j.neuroscience.2020.08.011.
ieee: A. Salamatina et al., “Differential loss of spinal interneurons in
a mouse model of ALS,” Neuroscience, vol. 450. Elsevier, pp. 81–95, 2020.
ista: Salamatina A, Yang JH, Brenner-Morton S, Bikoff JB, Fang L, Kintner CR, Jessell
TM, Sweeney LB. 2020. Differential loss of spinal interneurons in a mouse model
of ALS. Neuroscience. 450, 81–95.
mla: Salamatina, Alina, et al. “Differential Loss of Spinal Interneurons in a Mouse
Model of ALS.” Neuroscience, vol. 450, Elsevier, 2020, pp. 81–95, doi:10.1016/j.neuroscience.2020.08.011.
short: A. Salamatina, J.H. Yang, S. Brenner-Morton, J.B. Bikoff, L. Fang, C.R. Kintner,
T.M. Jessell, L.B. Sweeney, Neuroscience 450 (2020) 81–95.
date_created: 2020-12-03T11:47:31Z
date_published: 2020-12-01T00:00:00Z
date_updated: 2024-01-31T10:15:34Z
day: '01'
ddc:
- '570'
department:
- _id: LoSw
doi: 10.1016/j.neuroscience.2020.08.011
external_id:
isi:
- '000595588700008'
pmid:
- '32858144'
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month: '12'
oa: 1
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publication: Neuroscience
publication_identifier:
issn:
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publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Differential loss of spinal interneurons in a mouse model of ALS
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image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
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short: CC BY-NC-ND (4.0)
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year: '2020'
...
---
_id: '8834'
abstract:
- lang: eng
text: "This data collection contains the transport data for figures presented in
the supplementary material of \"Enhancement of Proximity Induced Superconductivity
in Planar Germanium\" by K. Aggarwal, et. al. \r\nThe measurements were done using
Labber Software and the data is stored in the hdf5 file format. The files can
be opened using either the Labber Log Browser (https://labber.org/overview/) or
Labber Python API (http://labber.org/online-doc/api/LogFile.html).\r\n"
article_processing_charge: No
author:
- first_name: Georgios
full_name: Katsaros, Georgios
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
orcid: 0000-0001-8342-202X
citation:
ama: Katsaros G. Enhancement of proximity induced superconductivity in planar Germanium.
2020. doi:10.15479/AT:ISTA:8834
apa: Katsaros, G. (2020). Enhancement of proximity induced superconductivity in
planar Germanium. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:8834
chicago: Katsaros, Georgios. “Enhancement of Proximity Induced Superconductivity
in Planar Germanium.” Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:8834.
ieee: G. Katsaros, “Enhancement of proximity induced superconductivity in planar
Germanium.” Institute of Science and Technology Austria, 2020.
ista: Katsaros G. 2020. Enhancement of proximity induced superconductivity in planar
Germanium, Institute of Science and Technology Austria, 10.15479/AT:ISTA:8834.
mla: Katsaros, Georgios. Enhancement of Proximity Induced Superconductivity in
Planar Germanium. Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:8834.
short: G. Katsaros, (2020).
contributor:
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first_name: Kushagra
id: b22ab905-3539-11eb-84c3-fc159dcd79cb
last_name: Aggarwal
- contributor_type: project_member
first_name: Andrea C
id: 340F461A-F248-11E8-B48F-1D18A9856A87
last_name: Hofmann
- contributor_type: project_member
first_name: Daniel
id: 4C473F58-F248-11E8-B48F-1D18A9856A87
last_name: Jirovec
- contributor_type: project_member
first_name: Ivan
id: 2A307FE2-F248-11E8-B48F-1D18A9856A87
last_name: Prieto Gonzalez
- contributor_type: project_member
first_name: Amir
last_name: Sammak
- contributor_type: project_member
first_name: Marc
last_name: Botifoll
- contributor_type: project_member
first_name: Sara
last_name: Marti-Sanchez
- contributor_type: project_member
first_name: Menno
last_name: Veldhorst
- contributor_type: project_member
first_name: Jordi
last_name: Arbiol
- contributor_type: project_member
first_name: Giordano
last_name: Scappucci
- contributor_type: project_leader
first_name: Georgios
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
date_created: 2020-12-02T10:49:30Z
date_published: 2020-12-02T00:00:00Z
date_updated: 2024-02-21T12:41:26Z
day: '02'
ddc:
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month: '12'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '10559'
relation: used_in_publication
status: public
- id: '8831'
relation: used_in_publication
status: public
status: public
title: Enhancement of proximity induced superconductivity in planar Germanium
tmp:
image: /images/cc_0.png
legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
name: Creative Commons Public Domain Dedication (CC0 1.0)
short: CC0 (1.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '8097'
abstract:
- lang: eng
text: 'Antibiotics that interfere with translation, when combined, interact in diverse
and difficult-to-predict ways. Here, we explain these interactions by "translation
bottlenecks": points in the translation cycle where antibiotics block ribosomal
progression. To elucidate the underlying mechanisms of drug interactions between
translation inhibitors, we generate translation bottlenecks genetically using
inducible control of translation factors that regulate well-defined translation
cycle steps. These perturbations accurately mimic antibiotic action and drug interactions,
supporting that the interplay of different translation bottlenecks causes these
interactions. We further show that growth laws, combined with drug uptake and
binding kinetics, enable the direct prediction of a large fraction of observed
interactions, yet fail to predict suppression. However, varying two translation
bottlenecks simultaneously supports that dense traffic of ribosomes and competition
for translation factors account for the previously unexplained suppression. These
results highlight the importance of "continuous epistasis" in bacterial physiology.'
acknowledged_ssus:
- _id: LifeSc
article_processing_charge: No
author:
- first_name: Bor
full_name: Kavcic, Bor
id: 350F91D2-F248-11E8-B48F-1D18A9856A87
last_name: Kavcic
orcid: 0000-0001-6041-254X
citation:
ama: Kavcic B. Analysis scripts and research data for the paper “Mechanisms of drug
interactions between translation-inhibiting antibiotics.” 2020. doi:10.15479/AT:ISTA:8097
apa: Kavcic, B. (2020). Analysis scripts and research data for the paper “Mechanisms
of drug interactions between translation-inhibiting antibiotics.” Institute of
Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:8097
chicago: Kavcic, Bor. “Analysis Scripts and Research Data for the Paper ‘Mechanisms
of Drug Interactions between Translation-Inhibiting Antibiotics.’” Institute of
Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:8097.
ieee: B. Kavcic, “Analysis scripts and research data for the paper ‘Mechanisms of
drug interactions between translation-inhibiting antibiotics.’” Institute of Science
and Technology Austria, 2020.
ista: Kavcic B. 2020. Analysis scripts and research data for the paper ‘Mechanisms
of drug interactions between translation-inhibiting antibiotics’, Institute of
Science and Technology Austria, 10.15479/AT:ISTA:8097.
mla: Kavcic, Bor. Analysis Scripts and Research Data for the Paper “Mechanisms
of Drug Interactions between Translation-Inhibiting Antibiotics.” Institute
of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:8097.
short: B. Kavcic, (2020).
contributor:
- contributor_type: research_group
first_name: Gašper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkačik
orcid: 0000-0002-6699-1455
- contributor_type: research_group
first_name: Tobias
id: 3E6DB97A-F248-11E8-B48F-1D18A9856A87
last_name: Bollenbach
date_created: 2020-07-06T20:40:19Z
date_published: 2020-07-15T00:00:00Z
date_updated: 2024-02-21T12:40:51Z
day: '15'
department:
- _id: GaTk
doi: 10.15479/AT:ISTA:8097
file:
- access_level: open_access
checksum: 5c321dbbb6d4b3c85da786fd3ebbdc98
content_type: application/zip
creator: bkavcic
date_created: 2020-07-06T20:38:27Z
date_updated: 2020-07-14T12:48:09Z
file_id: '8098'
file_name: natComm_2020_scripts.zip
file_size: 255770756
relation: main_file
file_date_updated: 2020-07-14T12:48:09Z
has_accepted_license: '1'
keyword:
- Escherichia coli
- antibiotic combinations
- translation
- growth laws
- drug interactions
- bacterial physiology
- translation inhibitors
month: '07'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
status: public
title: Analysis scripts and research data for the paper "Mechanisms of drug interactions
between translation-inhibiting antibiotics"
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '8254'
abstract:
- lang: eng
text: "Here are the research data underlying the publication \"Estimating inbreeding
and its effects in a long-term study of snapdragons (Antirrhinum majus)\". Further
information are summed up in the README document.\r\nThe files for this record
have been updated and are now found in the linked DOI https://doi.org/10.15479/AT:ISTA:9192."
article_processing_charge: No
author:
- first_name: Louise S
full_name: Arathoon, Louise S
id: 2CFCFF98-F248-11E8-B48F-1D18A9856A87
last_name: Arathoon
orcid: 0000-0003-1771-714X
citation:
ama: Arathoon LS. Estimating inbreeding and its effects in a long-term study of
snapdragons (Antirrhinum majus). 2020. doi:10.15479/AT:ISTA:8254
apa: Arathoon, L. S. (2020). Estimating inbreeding and its effects in a long-term
study of snapdragons (Antirrhinum majus). Institute of Science and Technology
Austria. https://doi.org/10.15479/AT:ISTA:8254
chicago: Arathoon, Louise S. “Estimating Inbreeding and Its Effects in a Long-Term
Study of Snapdragons (Antirrhinum Majus).” Institute of Science and Technology
Austria, 2020. https://doi.org/10.15479/AT:ISTA:8254.
ieee: L. S. Arathoon, “Estimating inbreeding and its effects in a long-term study
of snapdragons (Antirrhinum majus).” Institute of Science and Technology Austria,
2020.
ista: Arathoon LS. 2020. Estimating inbreeding and its effects in a long-term study
of snapdragons (Antirrhinum majus), Institute of Science and Technology Austria,
10.15479/AT:ISTA:8254.
mla: Arathoon, Louise S. Estimating Inbreeding and Its Effects in a Long-Term
Study of Snapdragons (Antirrhinum Majus). Institute of Science and Technology
Austria, 2020, doi:10.15479/AT:ISTA:8254.
short: L.S. Arathoon, (2020).
contributor:
- contributor_type: data_collector
first_name: Louise S
id: 2CFCFF98-F248-11E8-B48F-1D18A9856A87
last_name: Arathoon
- contributor_type: project_member
first_name: Parvathy
id: 455235B8-F248-11E8-B48F-1D18A9856A87
last_name: Surendranadh
- contributor_type: project_member
first_name: Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
- contributor_type: project_member
first_name: David
id: 419049E2-F248-11E8-B48F-1D18A9856A87
last_name: Field
orcid: 0000-0002-4014-8478
- contributor_type: project_member
first_name: Melinda
id: 2C78037E-F248-11E8-B48F-1D18A9856A87
last_name: Pickup
orcid: 0000-0001-6118-0541
- contributor_type: project_member
first_name: Carina
id: 3B4A7CE2-F248-11E8-B48F-1D18A9856A87
last_name: Baskett
date_created: 2020-08-12T12:49:23Z
date_published: 2020-08-18T00:00:00Z
date_updated: 2024-02-21T12:41:09Z
day: '18'
ddc:
- '576'
department:
- _id: NiBa
doi: 10.15479/AT:ISTA:8254
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checksum: 4f1382ed4384751b6013398c11557bf6
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creator: dernst
date_created: 2020-08-18T08:03:23Z
date_updated: 2020-08-18T08:03:23Z
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file_size: 5778420
relation: main_file
success: 1
file_date_updated: 2020-08-18T08:03:23Z
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month: '08'
oa: 1
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related_material:
record:
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status: public
status: public
title: Estimating inbreeding and its effects in a long-term study of snapdragons (Antirrhinum
majus)
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7541'
abstract:
- lang: eng
text: Semiconductor nanowires have been playing a crucial role in the development
of nanoscale devices for the realization of spin qubits, Majorana fermions, single
photon emitters, nanoprocessors, etc. The monolithic growth of site‐controlled
nanowires is a prerequisite toward the next generation of devices that will require
addressability and scalability. Here, combining top‐down nanofabrication and bottom‐up
self‐assembly, the growth of Ge wires on prepatterned Si (001) substrates with
controllable position, distance, length, and structure is reported. This is achieved
by a novel growth process that uses a SiGe strain‐relaxation template and can
be potentially generalized to other material combinations. Transport measurements
show an electrically tunable spin–orbit coupling, with a spin–orbit length similar
to that of III–V materials. Also, charge sensing between quantum dots in closely
spaced wires is observed, which underlines their potential for the realization
of advanced quantum devices. The reported results open a path toward scalable
qubit devices using nanowires on silicon.
acknowledged_ssus:
- _id: NanoFab
- _id: M-Shop
acknowledgement: 'This work was supported by the National Key R&D Program of China
(Grant Nos. 2016YFA0301701 and 2016YFA0300600), the NSFC (Grant Nos. 11574356, 11434010,
and 11404252), the Strategic Priority Research Program of CAS (Grant No. XDB30000000),
the ERC Starting Grant No. 335497, the FWF P32235 project, and the European Union''s
Horizon 2020 research and innovation program under Grant Agreement #862046. This
research was supported by the Scientific Service Units of IST Austria through resources
provided by the MIBA Machine Shop and the nanofabrication facility. F.L. thanks
support from DOE (Grant No. DE‐FG02‐04ER46148). H.H. thanks the Startup Funding
from Xi''an Jiaotong University.'
article_number: '1906523'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Fei
full_name: Gao, Fei
last_name: Gao
- first_name: Jian-Huan
full_name: Wang, Jian-Huan
last_name: Wang
- first_name: Hannes
full_name: Watzinger, Hannes
id: 35DF8E50-F248-11E8-B48F-1D18A9856A87
last_name: Watzinger
- first_name: Hao
full_name: Hu, Hao
last_name: Hu
- first_name: Marko J.
full_name: Rančić, Marko J.
last_name: Rančić
- first_name: Jie-Yin
full_name: Zhang, Jie-Yin
last_name: Zhang
- first_name: Ting
full_name: Wang, Ting
last_name: Wang
- first_name: Yuan
full_name: Yao, Yuan
last_name: Yao
- first_name: Gui-Lei
full_name: Wang, Gui-Lei
last_name: Wang
- first_name: Josip
full_name: Kukucka, Josip
id: 3F5D8856-F248-11E8-B48F-1D18A9856A87
last_name: Kukucka
- first_name: Lada
full_name: Vukušić, Lada
id: 31E9F056-F248-11E8-B48F-1D18A9856A87
last_name: Vukušić
orcid: 0000-0003-2424-8636
- first_name: Christoph
full_name: Kloeffel, Christoph
last_name: Kloeffel
- first_name: Daniel
full_name: Loss, Daniel
last_name: Loss
- first_name: Feng
full_name: Liu, Feng
last_name: Liu
- first_name: Georgios
full_name: Katsaros, Georgios
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
orcid: 0000-0001-8342-202X
- first_name: Jian-Jun
full_name: Zhang, Jian-Jun
last_name: Zhang
citation:
ama: Gao F, Wang J-H, Watzinger H, et al. Site-controlled uniform Ge/Si hut wires
with electrically tunable spin-orbit coupling. Advanced Materials. 2020;32(16).
doi:10.1002/adma.201906523
apa: Gao, F., Wang, J.-H., Watzinger, H., Hu, H., Rančić, M. J., Zhang, J.-Y., …
Zhang, J.-J. (2020). Site-controlled uniform Ge/Si hut wires with electrically
tunable spin-orbit coupling. Advanced Materials. Wiley. https://doi.org/10.1002/adma.201906523
chicago: Gao, Fei, Jian-Huan Wang, Hannes Watzinger, Hao Hu, Marko J. Rančić, Jie-Yin
Zhang, Ting Wang, et al. “Site-Controlled Uniform Ge/Si Hut Wires with Electrically
Tunable Spin-Orbit Coupling.” Advanced Materials. Wiley, 2020. https://doi.org/10.1002/adma.201906523.
ieee: F. Gao et al., “Site-controlled uniform Ge/Si hut wires with electrically
tunable spin-orbit coupling,” Advanced Materials, vol. 32, no. 16. Wiley,
2020.
ista: Gao F, Wang J-H, Watzinger H, Hu H, Rančić MJ, Zhang J-Y, Wang T, Yao Y, Wang
G-L, Kukucka J, Vukušić L, Kloeffel C, Loss D, Liu F, Katsaros G, Zhang J-J. 2020.
Site-controlled uniform Ge/Si hut wires with electrically tunable spin-orbit coupling.
Advanced Materials. 32(16), 1906523.
mla: Gao, Fei, et al. “Site-Controlled Uniform Ge/Si Hut Wires with Electrically
Tunable Spin-Orbit Coupling.” Advanced Materials, vol. 32, no. 16, 1906523,
Wiley, 2020, doi:10.1002/adma.201906523.
short: F. Gao, J.-H. Wang, H. Watzinger, H. Hu, M.J. Rančić, J.-Y. Zhang, T. Wang,
Y. Yao, G.-L. Wang, J. Kukucka, L. Vukušić, C. Kloeffel, D. Loss, F. Liu, G. Katsaros,
J.-J. Zhang, Advanced Materials 32 (2020).
date_created: 2020-02-28T09:47:00Z
date_published: 2020-04-23T00:00:00Z
date_updated: 2024-02-21T12:42:12Z
day: '23'
ddc:
- '530'
department:
- _id: GeKa
doi: 10.1002/adma.201906523
ec_funded: 1
external_id:
isi:
- '000516660900001'
file:
- access_level: open_access
checksum: c622737dc295972065782558337124a2
content_type: application/pdf
creator: dernst
date_created: 2020-11-20T10:11:35Z
date_updated: 2020-11-20T10:11:35Z
file_id: '8782'
file_name: 2020_AdvancedMaterials_Gao.pdf
file_size: 5242880
relation: main_file
success: 1
file_date_updated: 2020-11-20T10:11:35Z
has_accepted_license: '1'
intvolume: ' 32'
isi: 1
issue: '16'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
project:
- _id: 25517E86-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '335497'
name: Towards Spin qubits and Majorana fermions in Germanium selfassembled hut-wires
- _id: 237B3DA4-32DE-11EA-91FC-C7463DDC885E
call_identifier: FWF
grant_number: P32235
name: Towards scalable hut wire quantum devices
- _id: 237E5020-32DE-11EA-91FC-C7463DDC885E
call_identifier: H2020
grant_number: '862046'
name: TOPOLOGICALLY PROTECTED AND SCALABLE QUANTUM BITS
publication: Advanced Materials
publication_identifier:
issn:
- 0935-9648
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
record:
- id: '7996'
relation: dissertation_contains
status: public
- id: '9222'
relation: research_data
status: public
scopus_import: '1'
status: public
title: Site-controlled uniform Ge/Si hut wires with electrically tunable spin-orbit
coupling
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 32
year: '2020'
...
---
_id: '8930'
abstract:
- lang: eng
text: Phenomenological relations such as Ohm’s or Fourier’s law have a venerable
history in physics but are still scarce in biology. This situation restrains predictive
theory. Here, we build on bacterial “growth laws,” which capture physiological
feedback between translation and cell growth, to construct a minimal biophysical
model for the combined action of ribosome-targeting antibiotics. Our model predicts
drug interactions like antagonism or synergy solely from responses to individual
drugs. We provide analytical results for limiting cases, which agree well with
numerical results. We systematically refine the model by including direct physical
interactions of different antibiotics on the ribosome. In a limiting case, our
model provides a mechanistic underpinning for recent predictions of higher-order
interactions that were derived using entropy maximization. We further refine the
model to include the effects of antibiotics that mimic starvation and the presence
of resistance genes. We describe the impact of a starvation-mimicking antibiotic
on drug interactions analytically and verify it experimentally. Our extended model
suggests a change in the type of drug interaction that depends on the strength
of resistance, which challenges established rescaling paradigms. We experimentally
show that the presence of unregulated resistance genes can lead to altered drug
interaction, which agrees with the prediction of the model. While minimal, the
model is readily adaptable and opens the door to predicting interactions of second
and higher-order in a broad range of biological systems.
article_processing_charge: No
author:
- first_name: Bor
full_name: Kavcic, Bor
id: 350F91D2-F248-11E8-B48F-1D18A9856A87
last_name: Kavcic
orcid: 0000-0001-6041-254X
citation:
ama: Kavcic B. Analysis scripts and research data for the paper “Minimal biophysical
model of combined antibiotic action.” 2020. doi:10.15479/AT:ISTA:8930
apa: Kavcic, B. (2020). Analysis scripts and research data for the paper “Minimal
biophysical model of combined antibiotic action.” Institute of Science and Technology
Austria. https://doi.org/10.15479/AT:ISTA:8930
chicago: Kavcic, Bor. “Analysis Scripts and Research Data for the Paper ‘Minimal
Biophysical Model of Combined Antibiotic Action.’” Institute of Science and Technology
Austria, 2020. https://doi.org/10.15479/AT:ISTA:8930.
ieee: B. Kavcic, “Analysis scripts and research data for the paper ‘Minimal biophysical
model of combined antibiotic action.’” Institute of Science and Technology Austria,
2020.
ista: Kavcic B. 2020. Analysis scripts and research data for the paper ‘Minimal
biophysical model of combined antibiotic action’, Institute of Science and Technology
Austria, 10.15479/AT:ISTA:8930.
mla: Kavcic, Bor. Analysis Scripts and Research Data for the Paper “Minimal Biophysical
Model of Combined Antibiotic Action.” Institute of Science and Technology
Austria, 2020, doi:10.15479/AT:ISTA:8930.
short: B. Kavcic, (2020).
contributor:
- contributor_type: supervisor
first_name: Gašper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkačik
orcid: 0000-0002-6699-1455
- contributor_type: supervisor
first_name: Tobias
id: 3E6DB97A-F248-11E8-B48F-1D18A9856A87
last_name: Bollenbach
date_created: 2020-12-09T15:04:02Z
date_published: 2020-12-10T00:00:00Z
date_updated: 2024-02-21T12:41:42Z
day: '10'
ddc:
- '570'
department:
- _id: GaTk
doi: 10.15479/AT:ISTA:8930
file:
- access_level: open_access
checksum: 60a818edeffaa7da1ebf5f8fbea9ba18
content_type: application/zip
creator: bkavcic
date_created: 2020-12-09T15:00:19Z
date_updated: 2020-12-09T15:00:19Z
file_id: '8932'
file_name: PLoSCompBiol2020_datarep.zip
file_size: 315494370
relation: main_file
success: 1
file_date_updated: 2020-12-09T15:00:19Z
has_accepted_license: '1'
keyword:
- Escherichia coli
- antibiotic combinations
- translation
- growth laws
- drug interactions
- bacterial physiology
- translation inhibitors
month: '12'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '8997'
relation: used_in_publication
status: public
status: public
title: Analysis scripts and research data for the paper "Minimal biophysical model
of combined antibiotic action"
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '8951'
abstract:
- lang: eng
text: Gene expression levels are influenced by multiple coexisting molecular mechanisms.
Some of these interactions, such as those of transcription factors and promoters
have been studied extensively. However, predicting phenotypes of gene regulatory
networks remains a major challenge. Here, we use a well-defined synthetic gene
regulatory network to study how network phenotypes depend on local genetic context,
i.e. the genetic neighborhood of a transcription factor and its relative position.
We show that one gene regulatory network with fixed topology can display not only
quantitatively but also qualitatively different phenotypes, depending solely on
the local genetic context of its components. Our results demonstrate that changes
in local genetic context can place a single transcriptional unit within two separate
regulons without the need for complex regulatory sequences. We propose that relative
order of individual transcriptional units, with its potential for combinatorial
complexity, plays an important role in shaping phenotypes of gene regulatory networks.
article_processing_charge: No
author:
- first_name: Anna A
full_name: Nagy-Staron, Anna A
id: 3ABC5BA6-F248-11E8-B48F-1D18A9856A87
last_name: Nagy-Staron
orcid: 0000-0002-1391-8377
citation:
ama: Nagy-Staron AA. Sequences of gene regulatory network permutations for the article
“Local genetic context shapes the function of a gene regulatory network.” 2020.
doi:10.15479/AT:ISTA:8951
apa: Nagy-Staron, A. A. (2020). Sequences of gene regulatory network permutations
for the article “Local genetic context shapes the function of a gene regulatory
network.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:8951
chicago: Nagy-Staron, Anna A. “Sequences of Gene Regulatory Network Permutations
for the Article ‘Local Genetic Context Shapes the Function of a Gene Regulatory
Network.’” Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:8951.
ieee: A. A. Nagy-Staron, “Sequences of gene regulatory network permutations for
the article ‘Local genetic context shapes the function of a gene regulatory network.’”
Institute of Science and Technology Austria, 2020.
ista: Nagy-Staron AA. 2020. Sequences of gene regulatory network permutations for
the article ‘Local genetic context shapes the function of a gene regulatory network’,
Institute of Science and Technology Austria, 10.15479/AT:ISTA:8951.
mla: Nagy-Staron, Anna A. Sequences of Gene Regulatory Network Permutations for
the Article “Local Genetic Context Shapes the Function of a Gene Regulatory Network.”
Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:8951.
short: A.A. Nagy-Staron, (2020).
contributor:
- contributor_type: project_member
first_name: Anna A
id: 3ABC5BA6-F248-11E8-B48F-1D18A9856A87
last_name: Nagy-Staron
- contributor_type: project_member
first_name: Kathrin
id: 3AEC8556-F248-11E8-B48F-1D18A9856A87
last_name: Tomasek
- contributor_type: project_member
first_name: Caroline
last_name: Caruso Carter
- contributor_type: project_member
first_name: Elisabeth
last_name: Sonnleitner
- contributor_type: project_member
first_name: Bor
id: 350F91D2-F248-11E8-B48F-1D18A9856A87
last_name: Kavcic
orcid: 0000-0001-6041-254X
- contributor_type: project_member
first_name: Tiago
last_name: Paixão
- contributor_type: project_manager
first_name: Calin C
id: 47F8433E-F248-11E8-B48F-1D18A9856A87
last_name: Guet
orcid: 0000-0001-6220-2052
date_created: 2020-12-20T10:00:26Z
date_published: 2020-12-21T00:00:00Z
date_updated: 2024-02-21T12:41:57Z
day: '21'
ddc:
- '570'
department:
- _id: CaGu
doi: 10.15479/AT:ISTA:8951
file:
- access_level: open_access
checksum: f57862aeee1690c7effd2b1117d40ed1
content_type: text/plain
creator: bkavcic
date_created: 2020-12-20T09:52:52Z
date_updated: 2020-12-20T09:52:52Z
file_id: '8952'
file_name: readme.txt
file_size: 523
relation: main_file
success: 1
- access_level: open_access
checksum: f2c6d5232ec6d551b6993991e8689e9f
content_type: application/octet-stream
creator: bkavcic
date_created: 2020-12-20T22:01:44Z
date_updated: 2020-12-20T22:01:44Z
file_id: '8954'
file_name: GRNs Research depository.gb
file_size: 379228
relation: main_file
success: 1
file_date_updated: 2020-12-20T22:01:44Z
has_accepted_license: '1'
keyword:
- Gene regulatory networks
- Gene expression
- Escherichia coli
- Synthetic Biology
month: '12'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '9283'
relation: used_in_publication
status: public
status: public
title: Sequences of gene regulatory network permutations for the article "Local genetic
context shapes the function of a gene regulatory network"
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7383'
abstract:
- lang: eng
text: Organisms cope with change by employing transcriptional regulators. However,
when faced with rare environments, the evolution of transcriptional regulators
and their promoters may be too slow. We ask whether the intrinsic instability
of gene duplication and amplification provides a generic alternative to canonical
gene regulation. By real-time monitoring of gene copy number mutations in E. coli,
we show that gene duplications and amplifications enable adaptation to fluctuating
environments by rapidly generating copy number, and hence expression level, polymorphism.
This ‘amplification-mediated gene expression tuning’ occurs on timescales similar
to canonical gene regulation and can deal with rapid environmental changes. Mathematical
modeling shows that amplifications also tune gene expression in stochastic environments
where transcription factor-based schemes are hard to evolve or maintain. The fleeting
nature of gene amplifications gives rise to a generic population-level mechanism
that relies on genetic heterogeneity to rapidly tune expression of any gene, without
leaving any genomic signature.
article_processing_charge: No
author:
- first_name: Rok
full_name: Grah, Rok
id: 483E70DE-F248-11E8-B48F-1D18A9856A87
last_name: Grah
orcid: 0000-0003-2539-3560
citation:
ama: 'Grah R. Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level
Gene Expression regulation. 2020. doi:10.15479/AT:ISTA:7383'
apa: 'Grah, R. (2020). Matlab scripts for the Paper: Gene Amplification as a Form
of Population-Level Gene Expression regulation. Institute of Science and Technology
Austria. https://doi.org/10.15479/AT:ISTA:7383'
chicago: 'Grah, Rok. “Matlab Scripts for the Paper: Gene Amplification as a Form
of Population-Level Gene Expression Regulation.” Institute of Science and Technology
Austria, 2020. https://doi.org/10.15479/AT:ISTA:7383.'
ieee: 'R. Grah, “Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level
Gene Expression regulation.” Institute of Science and Technology Austria, 2020.'
ista: 'Grah R. 2020. Matlab scripts for the Paper: Gene Amplification as a Form
of Population-Level Gene Expression regulation, Institute of Science and Technology
Austria, 10.15479/AT:ISTA:7383.'
mla: 'Grah, Rok. Matlab Scripts for the Paper: Gene Amplification as a Form of
Population-Level Gene Expression Regulation. Institute of Science and Technology
Austria, 2020, doi:10.15479/AT:ISTA:7383.'
short: R. Grah, (2020).
contributor:
- contributor_type: project_leader
first_name: Calin C
id: 47F8433E-F248-11E8-B48F-1D18A9856A87
last_name: Guet
orcid: 0000-0001-6220-2052
date_created: 2020-01-28T10:41:49Z
date_published: 2020-01-28T00:00:00Z
date_updated: 2024-02-21T12:42:31Z
day: '28'
department:
- _id: CaGu
- _id: GaTk
doi: 10.15479/AT:ISTA:7383
file:
- access_level: open_access
checksum: 9d292cf5207b3829225f44c044cdb3fd
content_type: application/zip
creator: rgrah
date_created: 2020-01-28T10:39:40Z
date_updated: 2020-07-14T12:47:57Z
file_id: '7384'
file_name: Scripts.zip
file_size: 73363365
relation: main_file
- access_level: open_access
checksum: 4076ceab32ef588cc233802bab24c1ab
content_type: text/plain
creator: rgrah
date_created: 2020-01-28T10:39:30Z
date_updated: 2020-07-14T12:47:57Z
file_id: '7385'
file_name: READ_ME_MAIN.txt
file_size: 962
relation: main_file
file_date_updated: 2020-07-14T12:47:57Z
has_accepted_license: '1'
keyword:
- Matlab scripts
- analysis of microfluidics
- mathematical model
month: '01'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '7652'
relation: used_in_publication
status: public
status: public
title: 'Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level
Gene Expression regulation'
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '9222'
article_processing_charge: No
author:
- first_name: Georgios
full_name: Katsaros, Georgios
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
orcid: 0000-0001-8342-202X
citation:
ama: 'Katsaros G. Transport data for: Site‐controlled uniform Ge/Si Hut wires with
electrically tunable spin–orbit coupling. 2020. doi:10.15479/AT:ISTA:9222'
apa: 'Katsaros, G. (2020). Transport data for: Site‐controlled uniform Ge/Si Hut
wires with electrically tunable spin–orbit coupling. Institute of Science and
Technology Austria. https://doi.org/10.15479/AT:ISTA:9222'
chicago: 'Katsaros, Georgios. “Transport Data for: Site‐controlled Uniform Ge/Si
Hut Wires with Electrically Tunable Spin–Orbit Coupling.” Institute of Science
and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:9222.'
ieee: 'G. Katsaros, “Transport data for: Site‐controlled uniform Ge/Si Hut wires
with electrically tunable spin–orbit coupling.” Institute of Science and Technology
Austria, 2020.'
ista: 'Katsaros G. 2020. Transport data for: Site‐controlled uniform Ge/Si Hut wires
with electrically tunable spin–orbit coupling, Institute of Science and Technology
Austria, 10.15479/AT:ISTA:9222.'
mla: 'Katsaros, Georgios. Transport Data for: Site‐controlled Uniform Ge/Si Hut
Wires with Electrically Tunable Spin–Orbit Coupling. Institute of Science
and Technology Austria, 2020, doi:10.15479/AT:ISTA:9222.'
short: G. Katsaros, (2020).
contributor:
- contributor_type: research_group
first_name: Georgios
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
date_created: 2021-03-05T18:00:47Z
date_published: 2020-03-16T00:00:00Z
date_updated: 2024-02-21T12:42:13Z
day: '16'
ddc:
- '530'
department:
- _id: GeKa
doi: 10.15479/AT:ISTA:9222
file:
- access_level: open_access
checksum: 41b66e195ed3dbd73077feee77b05652
content_type: application/x-zip-compressed
creator: gkatsaro
date_created: 2021-03-05T17:50:45Z
date_updated: 2021-03-05T17:50:45Z
file_id: '9223'
file_name: DOI_SiteControlledHWs.zip
file_size: 13317557
relation: main_file
- access_level: open_access
checksum: a1dc5f710ba4b3bb7f248195ba754ab2
content_type: text/plain
creator: dernst
date_created: 2021-03-10T07:31:50Z
date_updated: 2021-03-10T07:31:50Z
file_id: '9233'
file_name: Readme.txt
file_size: 3515
relation: main_file
success: 1
file_date_updated: 2021-03-10T07:31:50Z
has_accepted_license: '1'
month: '03'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '7541'
relation: used_in_publication
status: public
status: public
title: 'Transport data for: Site‐controlled uniform Ge/Si Hut wires with electrically
tunable spin–orbit coupling'
tmp:
image: /images/cc_0.png
legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
name: Creative Commons Public Domain Dedication (CC0 1.0)
short: CC0 (1.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '8366'
abstract:
- lang: eng
text: "Fabrication of curved shells plays an important role in modern design, industry,
and science. Among their remarkable properties are, for example, aesthetics of
organic shapes, ability to evenly distribute loads, or efficient flow separation.
They find applications across vast length scales ranging from sky-scraper architecture
to microscopic devices. But, at\r\nthe same time, the design of curved shells
and their manufacturing process pose a variety of challenges. In this thesis,
they are addressed from several perspectives. In particular, this thesis presents
approaches based on the transformation of initially flat sheets into the target
curved surfaces. This involves problems of interactive design of shells with nontrivial
mechanical constraints, inverse design of complex structural materials, and data-driven
modeling of delicate and time-dependent physical properties. At the same time,
two newly-developed self-morphing mechanisms targeting flat-to-curved transformation
are presented.\r\nIn architecture, doubly curved surfaces can be realized as cold
bent glass panelizations. Originally flat glass panels are bent into frames and
remain stressed. This is a cost-efficient fabrication approach compared to hot
bending, when glass panels are shaped plastically. However such constructions
are prone to breaking during bending, and it is highly\r\nnontrivial to navigate
the design space, keeping the panels fabricable and aesthetically pleasing at
the same time. We introduce an interactive design system for cold bent glass façades,
while previously even offline optimization for such scenarios has not been sufficiently
developed. Our method is based on a deep learning approach providing quick\r\nand
high precision estimation of glass panel shape and stress while handling the shape\r\nmultimodality.\r\nFabrication
of smaller objects of scales below 1 m, can also greatly benefit from shaping
originally flat sheets. In this respect, we designed new self-morphing shell mechanisms
transforming from an initial flat state to a doubly curved state with high precision
and detail. Our so-called CurveUps demonstrate the encodement of the geometric
information\r\ninto the shell. Furthermore, we explored the frontiers of programmable
materials and showed how temporal information can additionally be encoded into
a flat shell. This allows prescribing deformation sequences for doubly curved
surfaces and, thus, facilitates self-collision avoidance enabling complex shapes
and functionalities otherwise impossible.\r\nBoth of these methods include inverse
design tools keeping the user in the design loop."
acknowledged_ssus:
- _id: M-Shop
- _id: ScienComp
acknowledgement: "During the work on this thesis, I received substantial support from
IST Austria’s scientific service units. A big thank you to Todor Asenov and other
Miba Machine Shop team members for their help with fabrication of experimental prototypes.
In addition, I would like to thank Scientific Computing team for the support with
high performance computing.\r\nFinancial support was provided by the European Research
Council (ERC) under grant agreement No 715767 - MATERIALIZABLE: Intelligent fabrication-oriented
Computational Design and Modeling, which I gratefully acknowledge."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Ruslan
full_name: Guseinov, Ruslan
id: 3AB45EE2-F248-11E8-B48F-1D18A9856A87
last_name: Guseinov
orcid: 0000-0001-9819-5077
citation:
ama: 'Guseinov R. Computational design of curved thin shells: From glass façades
to programmable matter. 2020. doi:10.15479/AT:ISTA:8366'
apa: 'Guseinov, R. (2020). Computational design of curved thin shells: From glass
façades to programmable matter. Institute of Science and Technology Austria.
https://doi.org/10.15479/AT:ISTA:8366'
chicago: 'Guseinov, Ruslan. “Computational Design of Curved Thin Shells: From Glass
Façades to Programmable Matter.” Institute of Science and Technology Austria,
2020. https://doi.org/10.15479/AT:ISTA:8366.'
ieee: 'R. Guseinov, “Computational design of curved thin shells: From glass façades
to programmable matter,” Institute of Science and Technology Austria, 2020.'
ista: 'Guseinov R. 2020. Computational design of curved thin shells: From glass
façades to programmable matter. Institute of Science and Technology Austria.'
mla: 'Guseinov, Ruslan. Computational Design of Curved Thin Shells: From Glass
Façades to Programmable Matter. Institute of Science and Technology Austria,
2020, doi:10.15479/AT:ISTA:8366.'
short: 'R. Guseinov, Computational Design of Curved Thin Shells: From Glass Façades
to Programmable Matter, Institute of Science and Technology Austria, 2020.'
date_created: 2020-09-10T16:19:55Z
date_published: 2020-09-21T00:00:00Z
date_updated: 2024-02-21T12:44:29Z
day: '21'
ddc:
- '000'
degree_awarded: PhD
department:
- _id: BeBi
doi: 10.15479/AT:ISTA:8366
ec_funded: 1
file:
- access_level: open_access
checksum: f8da89553da36037296b0a80f14ebf50
content_type: application/pdf
creator: rguseino
date_created: 2020-09-10T16:11:49Z
date_updated: 2020-09-10T16:11:49Z
file_id: '8367'
file_name: thesis_rguseinov.pdf
file_size: 70950442
relation: main_file
success: 1
- access_level: closed
checksum: e8fd944c960c20e0e27e6548af69121d
content_type: application/x-zip-compressed
creator: rguseino
date_created: 2020-09-11T09:39:48Z
date_updated: 2020-09-16T15:11:01Z
file_id: '8374'
file_name: thesis_source.zip
file_size: 76207597
relation: source_file
file_date_updated: 2020-09-16T15:11:01Z
has_accepted_license: '1'
keyword:
- computer-aided design
- shape modeling
- self-morphing
- mechanical engineering
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: '118'
project:
- _id: 24F9549A-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '715767'
name: 'MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and
Modeling'
publication_identifier:
isbn:
- 978-3-99078-010-7
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '7151'
relation: research_data
status: deleted
- id: '7262'
relation: part_of_dissertation
status: public
- id: '8562'
relation: part_of_dissertation
status: public
- id: '1001'
relation: part_of_dissertation
status: public
- id: '8375'
relation: research_data
status: public
status: public
supervisor:
- first_name: Bernd
full_name: Bickel, Bernd
id: 49876194-F248-11E8-B48F-1D18A9856A87
last_name: Bickel
orcid: 0000-0001-6511-9385
title: 'Computational design of curved thin shells: From glass façades to programmable
matter'
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2020'
...
---
_id: '8562'
abstract:
- lang: eng
text: "Cold bent glass is a promising and cost-efficient method for realizing doubly
curved glass facades. They are produced by attaching planar glass sheets to curved
frames and require keeping the occurring stress within safe limits.\r\nHowever,
it is very challenging to navigate the design space of cold bent glass panels
due to the fragility of the material, which impedes the form-finding for practically
feasible and aesthetically pleasing cold bent glass facades. We propose an interactive,
data-driven approach for designing cold bent glass facades that can be seamlessly
integrated into a typical architectural design pipeline. Our method allows non-expert
users to interactively edit a parametric surface while providing real-time feedback
on the deformed shape and maximum stress of cold bent glass panels. Designs are
automatically refined to minimize several fairness criteria while maximal stresses
are kept within glass limits. We achieve interactive frame rates by using a differentiable
Mixture Density Network trained from more than a million simulations. Given a
curved boundary, our regression model is capable of handling multistable\r\nconfigurations
and accurately predicting the equilibrium shape of the panel and its corresponding
maximal stress. We show predictions are highly accurate and validate our results
with a physical realization of a cold bent glass surface."
acknowledged_ssus:
- _id: ScienComp
acknowledgement: "We thank IST Austria’s Scientific Computing team for their support,
Corinna Datsiou and Sophie Pennetier for their expert input on the practical applications
of cold bent glass, and Zaha Hadid Architects and Waagner Biro for providing the
architectural datasets. Photo of Fondation Louis Vuitton by Francisco Anzola / CC
BY 2.0 / cropped.\r\nPhoto of Opus by Danica O. Kus. This project has received funding
from the European Union’s\r\nHorizon 2020 research and innovation program under
grant agreement No 675789 - Algebraic Representations in Computer-Aided Design for
complEx Shapes (ARCADES), from the European Research Council (ERC) under grant agreement
No 715767 - MATERIALIZABLE: Intelligent fabrication-oriented Computational Design
and Modeling, and SFB-Transregio “Discretization in Geometry and Dynamics” through
grant I 2978 of the Austrian Science Fund (FWF). F. Rist and K. Gavriil have been
partially supported by KAUST baseline funding."
article_number: '208'
article_processing_charge: No
article_type: original
author:
- first_name: Konstantinos
full_name: Gavriil, Konstantinos
last_name: Gavriil
- first_name: Ruslan
full_name: Guseinov, Ruslan
id: 3AB45EE2-F248-11E8-B48F-1D18A9856A87
last_name: Guseinov
orcid: 0000-0001-9819-5077
- first_name: Jesus
full_name: Perez Rodriguez, Jesus
id: 2DC83906-F248-11E8-B48F-1D18A9856A87
last_name: Perez Rodriguez
- first_name: Davide
full_name: Pellis, Davide
last_name: Pellis
- first_name: Paul M
full_name: Henderson, Paul M
id: 13C09E74-18D9-11E9-8878-32CFE5697425
last_name: Henderson
orcid: 0000-0002-5198-7445
- first_name: Florian
full_name: Rist, Florian
last_name: Rist
- first_name: Helmut
full_name: Pottmann, Helmut
last_name: Pottmann
- first_name: Bernd
full_name: Bickel, Bernd
id: 49876194-F248-11E8-B48F-1D18A9856A87
last_name: Bickel
orcid: 0000-0001-6511-9385
citation:
ama: Gavriil K, Guseinov R, Perez Rodriguez J, et al. Computational design of cold
bent glass façades. ACM Transactions on Graphics. 2020;39(6). doi:10.1145/3414685.3417843
apa: Gavriil, K., Guseinov, R., Perez Rodriguez, J., Pellis, D., Henderson, P. M.,
Rist, F., … Bickel, B. (2020). Computational design of cold bent glass façades.
ACM Transactions on Graphics. Association for Computing Machinery. https://doi.org/10.1145/3414685.3417843
chicago: Gavriil, Konstantinos, Ruslan Guseinov, Jesus Perez Rodriguez, Davide Pellis,
Paul M Henderson, Florian Rist, Helmut Pottmann, and Bernd Bickel. “Computational
Design of Cold Bent Glass Façades.” ACM Transactions on Graphics. Association
for Computing Machinery, 2020. https://doi.org/10.1145/3414685.3417843.
ieee: K. Gavriil et al., “Computational design of cold bent glass façades,”
ACM Transactions on Graphics, vol. 39, no. 6. Association for Computing
Machinery, 2020.
ista: Gavriil K, Guseinov R, Perez Rodriguez J, Pellis D, Henderson PM, Rist F,
Pottmann H, Bickel B. 2020. Computational design of cold bent glass façades. ACM
Transactions on Graphics. 39(6), 208.
mla: Gavriil, Konstantinos, et al. “Computational Design of Cold Bent Glass Façades.”
ACM Transactions on Graphics, vol. 39, no. 6, 208, Association for Computing
Machinery, 2020, doi:10.1145/3414685.3417843.
short: K. Gavriil, R. Guseinov, J. Perez Rodriguez, D. Pellis, P.M. Henderson, F.
Rist, H. Pottmann, B. Bickel, ACM Transactions on Graphics 39 (2020).
date_created: 2020-09-23T11:30:02Z
date_published: 2020-11-26T00:00:00Z
date_updated: 2024-02-21T12:43:21Z
day: '26'
ddc:
- '000'
department:
- _id: BeBi
doi: 10.1145/3414685.3417843
ec_funded: 1
external_id:
arxiv:
- '2009.03667'
isi:
- '000595589100048'
file:
- access_level: open_access
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creator: bbickel
date_created: 2023-05-23T20:54:43Z
date_updated: 2023-05-23T20:54:43Z
file_id: '13084'
file_name: coldglass.pdf
file_size: 28964641
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success: 1
file_date_updated: 2023-05-23T20:54:43Z
has_accepted_license: '1'
intvolume: ' 39'
isi: 1
issue: '6'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Submitted Version
project:
- _id: 24F9549A-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '715767'
name: 'MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and
Modeling'
publication: ACM Transactions on Graphics
publication_identifier:
eissn:
- 1557-7368
issn:
- 0730-0301
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
related_material:
link:
- description: News on IST Homepage
relation: press_release
url: https://ist.ac.at/en/news/bend-dont-break/
record:
- id: '8366'
relation: dissertation_contains
status: public
- id: '8761'
relation: research_data
status: public
scopus_import: '1'
status: public
title: Computational design of cold bent glass façades
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 39
year: '2020'
...
---
_id: '8203'
abstract:
- lang: eng
text: Using inelastic cotunneling spectroscopy we observe a zero field splitting
within the spin triplet manifold of Ge hut wire quantum dots. The states with
spin ±1 in the confinement direction are energetically favored by up to 55 μeV
compared to the spin 0 triplet state because of the strong spin–orbit coupling.
The reported effect should be observable in a broad class of strongly confined
hole quantum-dot systems and might need to be considered when operating hole spin
qubits.
acknowledged_ssus:
- _id: NanoFab
- _id: M-Shop
acknowledgement: "We acknowledge G. Burkard, V. N. Golovach, C. Kloeffel, D.Loss,
P. Rabl, and M. Rancič ́ for helpful discussions. We\r\nfurther acknowledge T.
Adletzberger, J. Aguilera, T. Asenov, S. Bagiante, T. Menner, L. Shafeek, P. Taus,
P. Traunmüller, and D. Waldhausl for their invaluable assistance. This research
was supported by the Scientific Service Units of IST Austria through resources provided
by the MIBA Machine Shop and the nanofabrication facility, by the FWF-P 32235 project,
by the National Key R&D Program of China (2016YFA0301701, 2016YFA0300600), and by
the European Union’s Horizon 2020 research and innovation program under grant agreement
no. 862046. All data of this publication are available at 10.15479/AT:ISTA:7689."
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Georgios
full_name: Katsaros, Georgios
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
orcid: 0000-0001-8342-202X
- first_name: Josip
full_name: Kukucka, Josip
id: 3F5D8856-F248-11E8-B48F-1D18A9856A87
last_name: Kukucka
- first_name: Lada
full_name: Vukušić, Lada
id: 31E9F056-F248-11E8-B48F-1D18A9856A87
last_name: Vukušić
orcid: 0000-0003-2424-8636
- first_name: Hannes
full_name: Watzinger, Hannes
id: 35DF8E50-F248-11E8-B48F-1D18A9856A87
last_name: Watzinger
- first_name: Fei
full_name: Gao, Fei
last_name: Gao
- first_name: Ting
full_name: Wang, Ting
last_name: Wang
orcid: 0000-0002-4619-9575
- first_name: Jian-Jun
full_name: Zhang, Jian-Jun
last_name: Zhang
- first_name: Karsten
full_name: Held, Karsten
last_name: Held
citation:
ama: Katsaros G, Kukucka J, Vukušić L, et al. Zero field splitting of heavy-hole
states in quantum dots. Nano Letters. 2020;20(7):5201-5206. doi:10.1021/acs.nanolett.0c01466
apa: Katsaros, G., Kukucka, J., Vukušić, L., Watzinger, H., Gao, F., Wang, T., …
Held, K. (2020). Zero field splitting of heavy-hole states in quantum dots. Nano
Letters. American Chemical Society. https://doi.org/10.1021/acs.nanolett.0c01466
chicago: Katsaros, Georgios, Josip Kukucka, Lada Vukušić, Hannes Watzinger, Fei
Gao, Ting Wang, Jian-Jun Zhang, and Karsten Held. “Zero Field Splitting of Heavy-Hole
States in Quantum Dots.” Nano Letters. American Chemical Society, 2020.
https://doi.org/10.1021/acs.nanolett.0c01466.
ieee: G. Katsaros et al., “Zero field splitting of heavy-hole states in quantum
dots,” Nano Letters, vol. 20, no. 7. American Chemical Society, pp. 5201–5206,
2020.
ista: Katsaros G, Kukucka J, Vukušić L, Watzinger H, Gao F, Wang T, Zhang J-J, Held
K. 2020. Zero field splitting of heavy-hole states in quantum dots. Nano Letters.
20(7), 5201–5206.
mla: Katsaros, Georgios, et al. “Zero Field Splitting of Heavy-Hole States in Quantum
Dots.” Nano Letters, vol. 20, no. 7, American Chemical Society, 2020, pp.
5201–06, doi:10.1021/acs.nanolett.0c01466.
short: G. Katsaros, J. Kukucka, L. Vukušić, H. Watzinger, F. Gao, T. Wang, J.-J.
Zhang, K. Held, Nano Letters 20 (2020) 5201–5206.
date_created: 2020-08-06T09:25:04Z
date_published: 2020-06-01T00:00:00Z
date_updated: 2024-02-21T12:44:01Z
day: '01'
ddc:
- '530'
department:
- _id: GeKa
doi: 10.1021/acs.nanolett.0c01466
ec_funded: 1
external_id:
isi:
- '000548893200066'
pmid:
- '32479090'
file:
- access_level: open_access
content_type: application/pdf
creator: dernst
date_created: 2020-08-06T09:35:37Z
date_updated: 2020-08-06T09:35:37Z
file_id: '8204'
file_name: 2020_NanoLetters_Katsaros.pdf
file_size: 3308906
relation: main_file
success: 1
file_date_updated: 2020-08-06T09:35:37Z
has_accepted_license: '1'
intvolume: ' 20'
isi: 1
issue: '7'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 5201-5206
pmid: 1
project:
- _id: 237B3DA4-32DE-11EA-91FC-C7463DDC885E
call_identifier: FWF
grant_number: P32235
name: Towards scalable hut wire quantum devices
- _id: 237E5020-32DE-11EA-91FC-C7463DDC885E
call_identifier: H2020
grant_number: '862046'
name: TOPOLOGICALLY PROTECTED AND SCALABLE QUANTUM BITS
publication: Nano Letters
publication_identifier:
eissn:
- 1530-6992
issn:
- 1530-6984
publication_status: published
publisher: American Chemical Society
quality_controlled: '1'
related_material:
record:
- id: '7689'
relation: research_data
status: public
scopus_import: '1'
status: public
title: Zero field splitting of heavy-hole states in quantum dots
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 20
year: '2020'
...
---
_id: '8740'
abstract:
- lang: eng
text: In vitro work revealed that excitatory synaptic inputs to hippocampal inhibitory
interneurons could undergo Hebbian, associative, or non-associative plasticity.
Both behavioral and learning-dependent reorganization of these connections has
also been demonstrated by measuring spike transmission probabilities in pyramidal
cell-interneuron spike cross-correlations that indicate monosynaptic connections.
Here we investigated the activity-dependent modification of these connections
during exploratory behavior in rats by optogenetically inhibiting pyramidal cell
and interneuron subpopulations. Light application and associated firing alteration
of pyramidal and interneuron populations led to lasting changes in pyramidal-interneuron
connection weights as indicated by spike transmission changes. Spike transmission
alterations were predicted by the light-mediated changes in the number of pre-
and postsynaptic spike pairing events and by firing rate changes of interneurons
but not pyramidal cells. This work demonstrates the presence of activity-dependent
associative and non-associative reorganization of pyramidal-interneuron connections
triggered by the optogenetic modification of the firing rate and spike synchrony
of cells.
acknowledgement: We thank Michele Nardin and Federico Stella for comments on an earlier
version of the manuscript. K Deisseroth for providing the pAAV-CaMKIIα::eNpHR3.0-YFP
plasmid through Addgene. E Boyden for providing AAV2/1.CaMKII::ArchT.GFP.WPRE.SV40
plasmid through Penn Vector Core. This work was supported by the Austrian Science
Fund (I02072 and I03713) and a Swiss National Science Foundation grant to PS. The
authors declare no conflicts of interest.
article_number: '61106'
article_processing_charge: No
article_type: original
author:
- first_name: Igor
full_name: Gridchyn, Igor
id: 4B60654C-F248-11E8-B48F-1D18A9856A87
last_name: Gridchyn
orcid: 0000-0002-1807-1929
- first_name: Philipp
full_name: Schönenberger, Philipp
id: 3B9D816C-F248-11E8-B48F-1D18A9856A87
last_name: Schönenberger
- first_name: Joseph
full_name: O'Neill, Joseph
id: 426376DC-F248-11E8-B48F-1D18A9856A87
last_name: O'Neill
- first_name: Jozsef L
full_name: Csicsvari, Jozsef L
id: 3FA14672-F248-11E8-B48F-1D18A9856A87
last_name: Csicsvari
orcid: 0000-0002-5193-4036
citation:
ama: Gridchyn I, Schönenberger P, O’Neill J, Csicsvari JL. Optogenetic inhibition-mediated
activity-dependent modification of CA1 pyramidal-interneuron connections during
behavior. eLife. 2020;9. doi:10.7554/eLife.61106
apa: Gridchyn, I., Schönenberger, P., O’Neill, J., & Csicsvari, J. L. (2020).
Optogenetic inhibition-mediated activity-dependent modification of CA1 pyramidal-interneuron
connections during behavior. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.61106
chicago: Gridchyn, Igor, Philipp Schönenberger, Joseph O’Neill, and Jozsef L Csicsvari.
“Optogenetic Inhibition-Mediated Activity-Dependent Modification of CA1 Pyramidal-Interneuron
Connections during Behavior.” ELife. eLife Sciences Publications, 2020.
https://doi.org/10.7554/eLife.61106.
ieee: I. Gridchyn, P. Schönenberger, J. O’Neill, and J. L. Csicsvari, “Optogenetic
inhibition-mediated activity-dependent modification of CA1 pyramidal-interneuron
connections during behavior,” eLife, vol. 9. eLife Sciences Publications,
2020.
ista: Gridchyn I, Schönenberger P, O’Neill J, Csicsvari JL. 2020. Optogenetic inhibition-mediated
activity-dependent modification of CA1 pyramidal-interneuron connections during
behavior. eLife. 9, 61106.
mla: Gridchyn, Igor, et al. “Optogenetic Inhibition-Mediated Activity-Dependent
Modification of CA1 Pyramidal-Interneuron Connections during Behavior.” ELife,
vol. 9, 61106, eLife Sciences Publications, 2020, doi:10.7554/eLife.61106.
short: I. Gridchyn, P. Schönenberger, J. O’Neill, J.L. Csicsvari, ELife 9 (2020).
date_created: 2020-11-08T23:01:25Z
date_published: 2020-10-05T00:00:00Z
date_updated: 2024-02-21T12:43:40Z
day: '05'
ddc:
- '570'
department:
- _id: JoCs
doi: 10.7554/eLife.61106
external_id:
isi:
- '000584369000001'
file:
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checksum: 6a7b0543c440f4c000a1864e69377d95
content_type: application/pdf
creator: dernst
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date_updated: 2020-11-09T09:17:40Z
file_id: '8749'
file_name: 2020_eLife_Gridchyn.pdf
file_size: 447669
relation: main_file
success: 1
file_date_updated: 2020-11-09T09:17:40Z
has_accepted_license: '1'
intvolume: ' 9'
isi: 1
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 257D4372-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I2072-B27
name: Interneuron plasticity during spatial learning
- _id: 2654F984-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I03713
name: Interneuro Plasticity During Spatial Learning
publication: eLife
publication_identifier:
eissn:
- 2050084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
related_material:
record:
- id: '8563'
relation: research_data
status: public
scopus_import: '1'
status: public
title: Optogenetic inhibition-mediated activity-dependent modification of CA1 pyramidal-interneuron
connections during behavior
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 9
year: '2020'
...
---
_id: '8375'
abstract:
- lang: eng
text: 'Supplementary movies showing the following sequences for spatio-temporarily
programmed shells: input geometry and actuation time landscape; comparison of
morphing processes from a camera recording and a simulation; final actuated shape.'
article_processing_charge: No
author:
- first_name: Ruslan
full_name: Guseinov, Ruslan
id: 3AB45EE2-F248-11E8-B48F-1D18A9856A87
last_name: Guseinov
orcid: 0000-0001-9819-5077
citation:
ama: 'Guseinov R. Supplementary data for “Computational design of curved thin shells:
from glass façades to programmable matter.” 2020. doi:10.15479/AT:ISTA:8375'
apa: 'Guseinov, R. (2020). Supplementary data for “Computational design of curved
thin shells: from glass façades to programmable matter.” Institute of Science
and Technology Austria. https://doi.org/10.15479/AT:ISTA:8375'
chicago: 'Guseinov, Ruslan. “Supplementary Data for ‘Computational Design of Curved
Thin Shells: From Glass Façades to Programmable Matter.’” Institute of Science
and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:8375.'
ieee: 'R. Guseinov, “Supplementary data for ‘Computational design of curved thin
shells: from glass façades to programmable matter.’” Institute of Science and
Technology Austria, 2020.'
ista: 'Guseinov R. 2020. Supplementary data for ‘Computational design of curved
thin shells: from glass façades to programmable matter’, Institute of Science
and Technology Austria, 10.15479/AT:ISTA:8375.'
mla: 'Guseinov, Ruslan. Supplementary Data for “Computational Design of Curved
Thin Shells: From Glass Façades to Programmable Matter.” Institute of Science
and Technology Austria, 2020, doi:10.15479/AT:ISTA:8375.'
short: R. Guseinov, (2020).
contributor:
- contributor_type: researcher
first_name: Ruslan
id: 3AB45EE2-F248-11E8-B48F-1D18A9856A87
last_name: Guseinov
orcid: 0000-0001-9819-5077
- contributor_type: researcher
first_name: Connor
last_name: McMahan
- contributor_type: researcher
first_name: Jesus
id: 2DC83906-F248-11E8-B48F-1D18A9856A87
last_name: Perez Rodriguez
- contributor_type: researcher
first_name: Chiara
last_name: Daraio
- contributor_type: researcher
first_name: Bernd
id: 49876194-F248-11E8-B48F-1D18A9856A87
last_name: Bickel
orcid: 0000-0001-6511-9385
date_created: 2020-09-11T09:52:54Z
date_published: 2020-09-21T00:00:00Z
date_updated: 2024-02-21T12:44:29Z
day: '21'
ddc:
- '000'
department:
- _id: BeBi
doi: 10.15479/AT:ISTA:8375
ec_funded: 1
file:
- access_level: open_access
checksum: 4029ffd65fb82ef2366b2fc2a4908e16
content_type: video/mp4
creator: rguseino
date_created: 2020-09-11T09:45:21Z
date_updated: 2020-09-11T09:45:21Z
file_id: '8376'
file_name: supplementary_movie_1.mp4
file_size: 29214988
relation: main_file
success: 1
- access_level: open_access
checksum: 8ed03b04d80f1a4e622cb22e6100afd8
content_type: video/mp4
creator: rguseino
date_created: 2020-09-11T09:45:25Z
date_updated: 2020-09-11T09:45:25Z
file_id: '8377'
file_name: supplementary_movie_2.mp4
file_size: 28449475
relation: main_file
success: 1
- access_level: open_access
checksum: ad6864afb5e694e5c52a88fba4e02eea
content_type: video/mp4
creator: rguseino
date_created: 2020-09-11T09:45:28Z
date_updated: 2020-09-11T09:45:28Z
file_id: '8378'
file_name: supplementary_movie_3.mp4
file_size: 26315853
relation: main_file
success: 1
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checksum: b079cef7871fe1afb69af0e2b099f3b1
content_type: video/mp4
creator: rguseino
date_created: 2020-09-11T09:45:33Z
date_updated: 2020-09-11T09:45:33Z
file_id: '8379'
file_name: supplementary_movie_4.mp4
file_size: 25198755
relation: main_file
success: 1
- access_level: open_access
checksum: 9d1d48a8ed5c109a999c51b044ee523d
content_type: video/mp4
creator: rguseino
date_created: 2020-09-11T09:45:36Z
date_updated: 2020-09-11T09:45:36Z
file_id: '8380'
file_name: supplementary_movie_5.mp4
file_size: 29011354
relation: main_file
success: 1
- access_level: open_access
checksum: d414d0059e982d752d218756b3c3ce05
content_type: text/plain
creator: rguseino
date_created: 2020-09-11T09:52:36Z
date_updated: 2020-09-11T09:52:36Z
file_id: '8381'
file_name: readme.txt
file_size: 586
relation: main_file
success: 1
file_date_updated: 2020-09-11T09:52:36Z
has_accepted_license: '1'
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 24F9549A-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '715767'
name: 'MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and
Modeling'
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '8366'
relation: used_in_publication
status: public
status: public
title: 'Supplementary data for "Computational design of curved thin shells: from glass
façades to programmable matter"'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7689'
abstract:
- lang: eng
text: "These are the supplementary research data to the publication \"Zero field
splitting of heavy-hole states in quantum dots\". All matrix files have the same
format. Within each column the bias voltage is changed. Each column corresponds
to either a different gate voltage or magnetic field. The voltage values are given
in mV, the current values in pA. Find a specific description in the included Readme
file.\r\n"
article_processing_charge: No
author:
- first_name: Georgios
full_name: Katsaros, Georgios
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
orcid: 0000-0001-8342-202X
citation:
ama: Katsaros G. Supplementary data for “Zero field splitting of heavy-hole states
in quantum dots.” 2020. doi:10.15479/AT:ISTA:7689
apa: Katsaros, G. (2020). Supplementary data for “Zero field splitting of heavy-hole
states in quantum dots.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:7689
chicago: Katsaros, Georgios. “Supplementary Data for ‘Zero Field Splitting of Heavy-Hole
States in Quantum Dots.’” Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:7689.
ieee: G. Katsaros, “Supplementary data for ‘Zero field splitting of heavy-hole states
in quantum dots.’” Institute of Science and Technology Austria, 2020.
ista: Katsaros G. 2020. Supplementary data for ‘Zero field splitting of heavy-hole
states in quantum dots’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:7689.
mla: Katsaros, Georgios. Supplementary Data for “Zero Field Splitting of Heavy-Hole
States in Quantum Dots.” Institute of Science and Technology Austria, 2020,
doi:10.15479/AT:ISTA:7689.
short: G. Katsaros, (2020).
contributor:
- contributor_type: contact_person
first_name: Georgios
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
date_created: 2020-05-01T15:14:46Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2024-02-21T12:44:02Z
day: '01'
ddc:
- '530'
department:
- _id: GeKa
doi: 10.15479/AT:ISTA:7689
ec_funded: 1
file:
- access_level: open_access
checksum: d23c0cb9e2d19e14e2f902b88b97c05d
content_type: application/x-zip-compressed
creator: gkatsaro
date_created: 2020-05-01T15:13:28Z
date_updated: 2020-07-14T12:48:02Z
file_id: '7786'
file_name: DOI_ZeroFieldSplitting.zip
file_size: 5514403
relation: main_file
file_date_updated: 2020-07-14T12:48:02Z
has_accepted_license: '1'
month: '05'
oa: 1
oa_version: Published Version
project:
- _id: 237E5020-32DE-11EA-91FC-C7463DDC885E
call_identifier: H2020
grant_number: '862046'
name: TOPOLOGICALLY PROTECTED AND SCALABLE QUANTUM BITS
- _id: 237B3DA4-32DE-11EA-91FC-C7463DDC885E
call_identifier: FWF
grant_number: P32235
name: Towards scalable hut wire quantum devices
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '8203'
relation: used_in_publication
status: public
status: public
title: Supplementary data for "Zero field splitting of heavy-hole states in quantum
dots"
tmp:
image: /images/cc_0.png
legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
name: Creative Commons Public Domain Dedication (CC0 1.0)
short: CC0 (1.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '8761'
acknowledged_ssus:
- _id: ScienComp
article_processing_charge: No
author:
- first_name: Ruslan
full_name: Guseinov, Ruslan
id: 3AB45EE2-F248-11E8-B48F-1D18A9856A87
last_name: Guseinov
orcid: 0000-0001-9819-5077
citation:
ama: Guseinov R. Supplementary data for “Computational design of cold bent glass
façades.” 2020. doi:10.15479/AT:ISTA:8761
apa: Guseinov, R. (2020). Supplementary data for “Computational design of cold bent
glass façades.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:8761
chicago: Guseinov, Ruslan. “Supplementary Data for ‘Computational Design of Cold
Bent Glass Façades.’” Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:8761.
ieee: R. Guseinov, “Supplementary data for ‘Computational design of cold bent glass
façades.’” Institute of Science and Technology Austria, 2020.
ista: Guseinov R. 2020. Supplementary data for ‘Computational design of cold bent
glass façades’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:8761.
mla: Guseinov, Ruslan. Supplementary Data for “Computational Design of Cold Bent
Glass Façades.” Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:8761.
short: R. Guseinov, (2020).
contributor:
- contributor_type: researcher
first_name: Konstantinos
last_name: Gavriil
- contributor_type: researcher
first_name: Ruslan
id: 3AB45EE2-F248-11E8-B48F-1D18A9856A87
last_name: Guseinov
orcid: 0000-0001-9819-5077
- contributor_type: researcher
first_name: Jesus
id: 2DC83906-F248-11E8-B48F-1D18A9856A87
last_name: Perez Rodriguez
- contributor_type: researcher
first_name: Davide
last_name: Pellis
- contributor_type: researcher
first_name: Paul M
id: 13C09E74-18D9-11E9-8878-32CFE5697425
last_name: Henderson
orcid: 0000-0002-5198-7445
- contributor_type: researcher
first_name: Florian
last_name: Rist
- contributor_type: researcher
first_name: Helmut
last_name: Pottmann
- contributor_type: researcher
first_name: Bernd
id: 49876194-F248-11E8-B48F-1D18A9856A87
last_name: Bickel
orcid: 0000-0001-6511-9385
date_created: 2020-11-16T10:47:18Z
date_published: 2020-11-23T00:00:00Z
date_updated: 2024-02-21T12:43:22Z
day: '23'
ddc:
- '000'
department:
- _id: BeBi
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ec_funded: 1
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date_updated: 2020-11-16T10:43:23Z
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file_id: '8770'
file_name: readme.txt
file_size: 1228
relation: main_file
success: 1
file_date_updated: 2020-11-18T10:04:59Z
has_accepted_license: '1'
month: '11'
oa: 1
oa_version: Published Version
project:
- _id: 24F9549A-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '715767'
name: 'MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and
Modeling'
publisher: Institute of Science and Technology Austria
related_material:
link:
- relation: software
url: https://github.com/russelmann/cold-glass-acm
record:
- id: '8562'
relation: used_in_publication
status: public
status: public
title: Supplementary data for "Computational design of cold bent glass façades"
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '8563'
abstract:
- lang: eng
text: "Supplementary data provided for the provided for the publication:\r\nIgor
Gridchyn , Philipp Schoenenberger , Joseph O'Neill , Jozsef Csicsvari (2020) Optogenetic
inhibition-mediated activity-dependent modification of CA1 pyramidal-interneuron
connections during behavior. Elife."
article_processing_charge: No
author:
- first_name: Jozsef L
full_name: Csicsvari, Jozsef L
id: 3FA14672-F248-11E8-B48F-1D18A9856A87
last_name: Csicsvari
orcid: 0000-0002-5193-4036
- first_name: Igor
full_name: Gridchyn, Igor
id: 4B60654C-F248-11E8-B48F-1D18A9856A87
last_name: Gridchyn
orcid: 0000-0002-1807-1929
- first_name: Philipp
full_name: Schönenberger, Philipp
id: 3B9D816C-F248-11E8-B48F-1D18A9856A87
last_name: Schönenberger
citation:
ama: Csicsvari JL, Gridchyn I, Schönenberger P. Optogenetic alteration of hippocampal
network activity. 2020. doi:10.15479/AT:ISTA:8563
apa: Csicsvari, J. L., Gridchyn, I., & Schönenberger, P. (2020). Optogenetic
alteration of hippocampal network activity. Institute of Science and Technology
Austria. https://doi.org/10.15479/AT:ISTA:8563
chicago: Csicsvari, Jozsef L, Igor Gridchyn, and Philipp Schönenberger. “Optogenetic
Alteration of Hippocampal Network Activity.” Institute of Science and Technology
Austria, 2020. https://doi.org/10.15479/AT:ISTA:8563.
ieee: J. L. Csicsvari, I. Gridchyn, and P. Schönenberger, “Optogenetic alteration
of hippocampal network activity.” Institute of Science and Technology Austria,
2020.
ista: Csicsvari JL, Gridchyn I, Schönenberger P. 2020. Optogenetic alteration of
hippocampal network activity, Institute of Science and Technology Austria, 10.15479/AT:ISTA:8563.
mla: Csicsvari, Jozsef L., et al. Optogenetic Alteration of Hippocampal Network
Activity. Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:8563.
short: J.L. Csicsvari, I. Gridchyn, P. Schönenberger, (2020).
contributor:
- contributor_type: project_leader
first_name: Jozsef L
id: 3FA14672-F248-11E8-B48F-1D18A9856A87
last_name: Csicsvari
orcid: 0000-0002-5193-4036
date_created: 2020-09-23T14:39:54Z
date_published: 2020-10-19T00:00:00Z
date_updated: 2024-02-21T12:43:41Z
day: '19'
ddc:
- '570'
department:
- _id: JoCs
doi: 10.15479/AT:ISTA:8563
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checksum: 0bfc54b7e14c0694cd081617318ba606
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creator: jozsef
date_created: 2020-10-19T10:12:29Z
date_updated: 2020-10-19T10:12:29Z
file_id: '8675'
file_name: redme.docx
file_size: 11648
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success: 1
file_date_updated: 2020-10-19T10:12:29Z
has_accepted_license: '1'
month: '10'
oa: 1
oa_version: Published Version
publisher: Institute of Science and Technology Austria
related_material:
record:
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relation: used_in_publication
status: public
status: public
title: Optogenetic alteration of hippocampal network activity
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7262'
abstract:
- lang: eng
text: Advances in shape-morphing materials, such as hydrogels, shape-memory polymers
and light-responsive polymers have enabled prescribing self-directed deformations
of initially flat geometries. However, most proposed solutions evolve towards
a target geometry without considering time-dependent actuation paths. To achieve
more complex geometries and avoid self-collisions, it is critical to encode a
spatial and temporal shape evolution within the initially flat shell. Recent realizations
of time-dependent morphing are limited to the actuation of few, discrete hinges
and cannot form doubly curved surfaces. Here, we demonstrate a method for encoding
temporal shape evolution in architected shells that assume complex shapes and
doubly curved geometries. The shells are non-periodic tessellations of pre-stressed
contractile unit cells that soften in water at rates prescribed locally by mesostructure
geometry. The ensuing midplane contraction is coupled to the formation of encoded
curvatures. We propose an inverse design tool based on a data-driven model for
unit cells’ temporal responses.
article_number: '237'
article_processing_charge: No
article_type: original
author:
- first_name: Ruslan
full_name: Guseinov, Ruslan
id: 3AB45EE2-F248-11E8-B48F-1D18A9856A87
last_name: Guseinov
orcid: 0000-0001-9819-5077
- first_name: Connor
full_name: McMahan, Connor
last_name: McMahan
- first_name: Jesus
full_name: Perez Rodriguez, Jesus
id: 2DC83906-F248-11E8-B48F-1D18A9856A87
last_name: Perez Rodriguez
- first_name: Chiara
full_name: Daraio, Chiara
last_name: Daraio
- first_name: Bernd
full_name: Bickel, Bernd
id: 49876194-F248-11E8-B48F-1D18A9856A87
last_name: Bickel
orcid: 0000-0001-6511-9385
citation:
ama: Guseinov R, McMahan C, Perez Rodriguez J, Daraio C, Bickel B. Programming temporal
morphing of self-actuated shells. Nature Communications. 2020;11. doi:10.1038/s41467-019-14015-2
apa: Guseinov, R., McMahan, C., Perez Rodriguez, J., Daraio, C., & Bickel, B.
(2020). Programming temporal morphing of self-actuated shells. Nature Communications.
Springer Nature. https://doi.org/10.1038/s41467-019-14015-2
chicago: Guseinov, Ruslan, Connor McMahan, Jesus Perez Rodriguez, Chiara Daraio,
and Bernd Bickel. “Programming Temporal Morphing of Self-Actuated Shells.” Nature
Communications. Springer Nature, 2020. https://doi.org/10.1038/s41467-019-14015-2.
ieee: R. Guseinov, C. McMahan, J. Perez Rodriguez, C. Daraio, and B. Bickel, “Programming
temporal morphing of self-actuated shells,” Nature Communications, vol.
11. Springer Nature, 2020.
ista: Guseinov R, McMahan C, Perez Rodriguez J, Daraio C, Bickel B. 2020. Programming
temporal morphing of self-actuated shells. Nature Communications. 11, 237.
mla: Guseinov, Ruslan, et al. “Programming Temporal Morphing of Self-Actuated Shells.”
Nature Communications, vol. 11, 237, Springer Nature, 2020, doi:10.1038/s41467-019-14015-2.
short: R. Guseinov, C. McMahan, J. Perez Rodriguez, C. Daraio, B. Bickel, Nature
Communications 11 (2020).
date_created: 2020-01-13T16:54:26Z
date_published: 2020-01-13T00:00:00Z
date_updated: 2024-02-21T12:45:02Z
day: '13'
ddc:
- '000'
department:
- _id: BeBi
doi: 10.1038/s41467-019-14015-2
ec_funded: 1
external_id:
isi:
- '000511916800015'
file:
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content_type: application/pdf
creator: rguseino
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date_updated: 2020-07-14T12:47:55Z
file_id: '7336'
file_name: 2020_NatureComm_Guseinov.pdf
file_size: 1315270
relation: main_file
file_date_updated: 2020-07-14T12:47:55Z
has_accepted_license: '1'
intvolume: ' 11'
isi: 1
keyword:
- Design
- Synthesis and processing
- Mechanical engineering
- Polymers
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: 24F9549A-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '715767'
name: 'MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and
Modeling'
publication: Nature Communications
publication_identifier:
issn:
- 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
link:
- description: News on IST Homepage
relation: press_release
url: https://ist.ac.at/en/news/geometry-meets-time/
record:
- id: '8366'
relation: dissertation_contains
status: public
- id: '7154'
relation: research_data
status: public
scopus_import: '1'
status: public
title: Programming temporal morphing of self-actuated shells
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11
year: '2020'
...
---
_id: '14592'
abstract:
- lang: eng
text: Cryo-electron microscopy (cryo-EM) of cellular specimens provides insights
into biological processes and structures within a native context. However, a major
challenge still lies in the efficient and reproducible preparation of adherent
cells for subsequent cryo-EM analysis. This is due to the sensitivity of many
cellular specimens to the varying seeding and culturing conditions required for
EM experiments, the often limited amount of cellular material and also the fragility
of EM grids and their substrate. Here, we present low-cost and reusable 3D printed
grid holders, designed to improve specimen preparation when culturing challenging
cellular samples directly on grids. The described grid holders increase cell culture
reproducibility and throughput, and reduce the resources required for cell culturing.
We show that grid holders can be integrated into various cryo-EM workflows, including
micro-patterning approaches to control cell seeding on grids, and for generating
samples for cryo-focused ion beam milling and cryo-electron tomography experiments.
Their adaptable design allows for the generation of specialized grid holders customized
to a large variety of applications.
article_processing_charge: No
author:
- first_name: Florian KM
full_name: Schur, Florian KM
id: 48AD8942-F248-11E8-B48F-1D18A9856A87
last_name: Schur
orcid: 0000-0003-4790-8078
citation:
ama: Schur FK. STL-files for 3D-printed grid holders described in Fäßler F, Zens
B, et al.; 3D printed cell culture grid holders for improved cellular specimen
preparation in cryo-electron microscopy. 2020. doi:10.15479/AT:ISTA:14592
apa: Schur, F. K. (2020). STL-files for 3D-printed grid holders described in Fäßler
F, Zens B, et al.; 3D printed cell culture grid holders for improved cellular
specimen preparation in cryo-electron microscopy. Institute of Science and Technology
Austria. https://doi.org/10.15479/AT:ISTA:14592
chicago: Schur, Florian KM. “STL-Files for 3D-Printed Grid Holders Described in
Fäßler F, Zens B, et Al.; 3D Printed Cell Culture Grid Holders for Improved Cellular
Specimen Preparation in Cryo-Electron Microscopy.” Institute of Science and Technology
Austria, 2020. https://doi.org/10.15479/AT:ISTA:14592.
ieee: F. K. Schur, “STL-files for 3D-printed grid holders described in Fäßler F,
Zens B, et al.; 3D printed cell culture grid holders for improved cellular specimen
preparation in cryo-electron microscopy.” Institute of Science and Technology
Austria, 2020.
ista: Schur FK. 2020. STL-files for 3D-printed grid holders described in Fäßler
F, Zens B, et al.; 3D printed cell culture grid holders for improved cellular
specimen preparation in cryo-electron microscopy, Institute of Science and Technology
Austria, 10.15479/AT:ISTA:14592.
mla: Schur, Florian KM. STL-Files for 3D-Printed Grid Holders Described in Fäßler
F, Zens B, et Al.; 3D Printed Cell Culture Grid Holders for Improved Cellular
Specimen Preparation in Cryo-Electron Microscopy. Institute of Science and
Technology Austria, 2020, doi:10.15479/AT:ISTA:14592.
short: F.K. Schur, (2020).
contributor:
- contributor_type: researcher
first_name: Florian
id: 404F5528-F248-11E8-B48F-1D18A9856A87
last_name: Fäßler
orcid: 0000-0001-7149-769X
- contributor_type: researcher
first_name: Bettina
id: 45FD126C-F248-11E8-B48F-1D18A9856A87
last_name: Zens
- contributor_type: researcher
first_name: Robert
id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
last_name: Hauschild
- contributor_type: researcher
first_name: Florian KM
id: 48AD8942-F248-11E8-B48F-1D18A9856A87
last_name: Schur
orcid: 0000-0003-4790-8078
date_created: 2023-11-22T15:00:57Z
date_published: 2020-12-01T00:00:00Z
date_updated: 2024-02-21T12:44:48Z
day: '01'
ddc:
- '570'
department:
- _id: FlSc
doi: 10.15479/AT:ISTA:14592
file:
- access_level: open_access
checksum: 0108616e2a59e51879ea51299a29b091
content_type: application/zip
creator: fschur
date_created: 2023-11-22T14:58:44Z
date_updated: 2023-11-22T14:58:44Z
file_id: '14593'
file_name: 3Dprint-files_download_v2.zip
file_size: 49297
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success: 1
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checksum: 4c66ddedee4d01c1c4a7978208350cfc
content_type: text/plain
creator: cchlebak
date_created: 2023-12-01T10:39:59Z
date_updated: 2023-12-01T10:39:59Z
file_id: '14637'
file_name: readme.txt
file_size: 641
relation: main_file
success: 1
file_date_updated: 2023-12-01T10:39:59Z
has_accepted_license: '1'
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: 9B954C5C-BA93-11EA-9121-9846C619BF3A
grant_number: P33367
name: Structure and isoform diversity of the Arp2/3 complex
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '8586'
relation: research_data
status: public
status: public
title: STL-files for 3D-printed grid holders described in Fäßler F, Zens B, et al.;
3D printed cell culture grid holders for improved cellular specimen preparation
in cryo-electron microscopy
tmp:
image: /images/cc_by_nc_sa.png
legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
BY-NC-SA 4.0)
short: CC BY-NC-SA (4.0)
type: research_data
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7213'
abstract:
- lang: eng
text: Persistent homology is a powerful tool in Topological Data Analysis (TDA)
to capture the topological properties of data succinctly at different spatial
resolutions. For graphical data, the shape, and structure of the neighborhood
of individual data items (nodes) are an essential means of characterizing their
properties. We propose the use of persistent homology methods to capture structural
and topological properties of graphs and use it to address the problem of link
prediction. We achieve encouraging results on nine different real-world datasets
that attest to the potential of persistent homology-based methods for network
analysis.
alternative_title:
- SCI
article_processing_charge: No
author:
- first_name: Sumit
full_name: Bhatia, Sumit
last_name: Bhatia
- first_name: Bapi
full_name: Chatterjee, Bapi
id: 3C41A08A-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-2742-4028
- first_name: Deepak
full_name: Nathani, Deepak
last_name: Nathani
- first_name: Manohar
full_name: Kaul, Manohar
last_name: Kaul
citation:
ama: 'Bhatia S, Chatterjee B, Nathani D, Kaul M. A persistent homology perspective
to the link prediction problem. In: Complex Networks and Their Applications
VIII. Vol 881. Springer Nature; 2020:27-39. doi:10.1007/978-3-030-36687-2_3'
apa: 'Bhatia, S., Chatterjee, B., Nathani, D., & Kaul, M. (2020). A persistent
homology perspective to the link prediction problem. In Complex Networks and
their applications VIII (Vol. 881, pp. 27–39). Lisbon, Portugal: Springer
Nature. https://doi.org/10.1007/978-3-030-36687-2_3'
chicago: Bhatia, Sumit, Bapi Chatterjee, Deepak Nathani, and Manohar Kaul. “A Persistent
Homology Perspective to the Link Prediction Problem.” In Complex Networks and
Their Applications VIII, 881:27–39. Springer Nature, 2020. https://doi.org/10.1007/978-3-030-36687-2_3.
ieee: S. Bhatia, B. Chatterjee, D. Nathani, and M. Kaul, “A persistent homology
perspective to the link prediction problem,” in Complex Networks and their
applications VIII, Lisbon, Portugal, 2020, vol. 881, pp. 27–39.
ista: 'Bhatia S, Chatterjee B, Nathani D, Kaul M. 2020. A persistent homology perspective
to the link prediction problem. Complex Networks and their applications VIII.
COMPLEX: International Conference on Complex Networks and their Applications,
SCI, vol. 881, 27–39.'
mla: Bhatia, Sumit, et al. “A Persistent Homology Perspective to the Link Prediction
Problem.” Complex Networks and Their Applications VIII, vol. 881, Springer
Nature, 2020, pp. 27–39, doi:10.1007/978-3-030-36687-2_3.
short: S. Bhatia, B. Chatterjee, D. Nathani, M. Kaul, in:, Complex Networks and
Their Applications VIII, Springer Nature, 2020, pp. 27–39.
conference:
end_date: 2019-12-12
location: Lisbon, Portugal
name: 'COMPLEX: International Conference on Complex Networks and their Applications'
start_date: 2019-12-10
date_created: 2019-12-29T23:00:45Z
date_published: 2020-01-01T00:00:00Z
date_updated: 2024-02-22T13:16:06Z
day: '01'
ddc:
- '004'
department:
- _id: DaAl
doi: 10.1007/978-3-030-36687-2_3
ec_funded: 1
external_id:
isi:
- '000843927300003'
file:
- access_level: open_access
checksum: 8951f094c8c7dae9ff8db885199bc296
content_type: application/pdf
creator: bchatter
date_created: 2020-10-08T08:16:48Z
date_updated: 2020-10-08T08:16:48Z
file_id: '8625'
file_name: main.pdf
file_size: 310598
relation: main_file
success: 1
file_date_updated: 2020-10-08T08:16:48Z
has_accepted_license: '1'
intvolume: ' 881'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Submitted Version
page: 27-39
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Complex Networks and their applications VIII
publication_identifier:
eissn:
- '18609503'
isbn:
- '9783030366865'
issn:
- 1860949X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: A persistent homology perspective to the link prediction problem
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 881
year: '2020'
...
---
_id: '10556'
abstract:
- lang: eng
text: In this paper, we present the first Asynchronous Distributed Key Generation
(ADKG) algorithm which is also the first distributed key generation algorithm
that can generate cryptographic keys with a dual (f,2f+1)-threshold (where f is
the number of faulty parties). As a result, using our ADKG we remove the trusted
setup assumption that the most scalable consensus algorithms make. In order to
create a DKG with a dual (f,2f+1)- threshold we first answer in the affirmative
the open question posed by Cachin et al. [7] on how to create an Asynchronous
Verifiable Secret Sharing (AVSS) protocol with a reconstruction threshold of f+1Proceedings of the 2020 ACM SIGSAC Conference on Computer and Communications
Security. Association for Computing Machinery; 2020:1751–1767. doi:10.1145/3372297.3423364'
apa: 'Kokoris Kogias, E., Malkhi, D., & Spiegelman, A. (2020). Asynchronous
distributed key generation for computationally-secure randomness, consensus, and
threshold signatures. In Proceedings of the 2020 ACM SIGSAC Conference on Computer
and Communications Security (pp. 1751–1767). Virtual, United States: Association
for Computing Machinery. https://doi.org/10.1145/3372297.3423364'
chicago: Kokoris Kogias, Eleftherios, Dahlia Malkhi, and Alexander Spiegelman. “Asynchronous
Distributed Key Generation for Computationally-Secure Randomness, Consensus, and
Threshold Signatures.” In Proceedings of the 2020 ACM SIGSAC Conference on
Computer and Communications Security, 1751–1767. Association for Computing
Machinery, 2020. https://doi.org/10.1145/3372297.3423364.
ieee: E. Kokoris Kogias, D. Malkhi, and A. Spiegelman, “Asynchronous distributed
key generation for computationally-secure randomness, consensus, and threshold
signatures,” in Proceedings of the 2020 ACM SIGSAC Conference on Computer and
Communications Security, Virtual, United States, 2020, pp. 1751–1767.
ista: 'Kokoris Kogias E, Malkhi D, Spiegelman A. 2020. Asynchronous distributed
key generation for computationally-secure randomness, consensus, and threshold
signatures. Proceedings of the 2020 ACM SIGSAC Conference on Computer and Communications
Security. CCS: Computer and Communications Security, 1751–1767.'
mla: Kokoris Kogias, Eleftherios, et al. “Asynchronous Distributed Key Generation
for Computationally-Secure Randomness, Consensus, and Threshold Signatures.” Proceedings
of the 2020 ACM SIGSAC Conference on Computer and Communications Security,
Association for Computing Machinery, 2020, pp. 1751–1767, doi:10.1145/3372297.3423364.
short: E. Kokoris Kogias, D. Malkhi, A. Spiegelman, in:, Proceedings of the 2020
ACM SIGSAC Conference on Computer and Communications Security, Association for
Computing Machinery, 2020, pp. 1751–1767.
conference:
end_date: 2020-11-13
location: Virtual, United States
name: 'CCS: Computer and Communications Security'
start_date: 2020-11-09
date_created: 2021-12-16T13:23:27Z
date_published: 2020-10-30T00:00:00Z
date_updated: 2024-02-22T13:10:45Z
day: '30'
department:
- _id: ElKo
doi: 10.1145/3372297.3423364
external_id:
isi:
- '000768470400104'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://eprint.iacr.org/2019/1015
month: '10'
oa: 1
oa_version: Preprint
page: 1751–1767
publication: Proceedings of the 2020 ACM SIGSAC Conference on Computer and Communications
Security
publication_identifier:
isbn:
- 978-1-4503-7089-9
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Asynchronous distributed key generation for computationally-secure randomness,
consensus, and threshold signatures
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '9202'
abstract:
- lang: eng
text: We propose a novel hybridization method for stability analysis that over-approximates
nonlinear dynamical systems by switched systems with linear inclusion dynamics.
We observe that existing hybridization techniques for safety analysis that over-approximate
nonlinear dynamical systems by switched affine inclusion dynamics and provide
fixed approximation error, do not suffice for stability analysis. Hence, we propose
a hybridization method that provides a state-dependent error which converges to
zero as the state tends to the equilibrium point. The crux of our hybridization
computation is an elegant recursive algorithm that uses partial derivatives of
a given function to obtain upper and lower bound matrices for the over-approximating
linear inclusion. We illustrate our method on some examples to demonstrate the
application of the theory for stability analysis. In particular, our method is
able to establish stability of a nonlinear system which does not admit a polynomial
Lyapunov function.
acknowledgement: Miriam Garc´ıa Soto was partially supported by the Austrian Science
Fund (FWF) under grant Z211-N23 (Wittgenstein Award). Pavithra Prabhakar was partially
supported by NSF CAREER Award No. 1552668, NSF Award No. 2008957 and ONR YIP Award
No. N000141712577.
article_processing_charge: No
author:
- first_name: Miriam
full_name: Garcia Soto, Miriam
id: 4B3207F6-F248-11E8-B48F-1D18A9856A87
last_name: Garcia Soto
orcid: 0000-0003-2936-5719
- first_name: Pavithra
full_name: Prabhakar, Pavithra
last_name: Prabhakar
citation:
ama: 'Garcia Soto M, Prabhakar P. Hybridization for stability verification of nonlinear
switched systems. In: 2020 IEEE Real-Time Systems Symposium. IEEE; 2020:244-256.
doi:10.1109/RTSS49844.2020.00031'
apa: 'Garcia Soto, M., & Prabhakar, P. (2020). Hybridization for stability verification
of nonlinear switched systems. In 2020 IEEE Real-Time Systems Symposium
(pp. 244–256). Houston, TX, USA : IEEE. https://doi.org/10.1109/RTSS49844.2020.00031'
chicago: Garcia Soto, Miriam, and Pavithra Prabhakar. “Hybridization for Stability
Verification of Nonlinear Switched Systems.” In 2020 IEEE Real-Time Systems
Symposium, 244–56. IEEE, 2020. https://doi.org/10.1109/RTSS49844.2020.00031.
ieee: M. Garcia Soto and P. Prabhakar, “Hybridization for stability verification
of nonlinear switched systems,” in 2020 IEEE Real-Time Systems Symposium,
Houston, TX, USA , 2020, pp. 244–256.
ista: 'Garcia Soto M, Prabhakar P. 2020. Hybridization for stability verification
of nonlinear switched systems. 2020 IEEE Real-Time Systems Symposium. RTTS: Real-Time
Systems Symposium, 244–256.'
mla: Garcia Soto, Miriam, and Pavithra Prabhakar. “Hybridization for Stability Verification
of Nonlinear Switched Systems.” 2020 IEEE Real-Time Systems Symposium,
IEEE, 2020, pp. 244–56, doi:10.1109/RTSS49844.2020.00031.
short: M. Garcia Soto, P. Prabhakar, in:, 2020 IEEE Real-Time Systems Symposium,
IEEE, 2020, pp. 244–256.
conference:
end_date: 2020-12-04
location: 'Houston, TX, USA '
name: 'RTTS: Real-Time Systems Symposium'
start_date: 2020-12-01
date_created: 2021-02-26T16:38:24Z
date_published: 2020-12-01T00:00:00Z
date_updated: 2024-02-22T13:25:19Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1109/RTSS49844.2020.00031
external_id:
isi:
- '000680435100021'
file:
- access_level: open_access
checksum: 8f97f229316c3b3a6f0cf99297aa0941
content_type: application/pdf
creator: mgarcias
date_created: 2021-02-26T16:38:14Z
date_updated: 2021-02-26T16:38:14Z
file_id: '9203'
file_name: main.pdf
file_size: 1125794
relation: main_file
file_date_updated: 2021-02-26T16:38:14Z
has_accepted_license: '1'
isi: 1
language:
- iso: eng
month: '12'
oa: 1
oa_version: Submitted Version
page: 244-256
project:
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z211
name: The Wittgenstein Prize
publication: 2020 IEEE Real-Time Systems Symposium
publication_identifier:
eisbn:
- '9781728183244'
eissn:
- 2576-3172
publication_status: published
publisher: IEEE
quality_controlled: '1'
status: public
title: Hybridization for stability verification of nonlinear switched systems
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '6906'
abstract:
- lang: eng
text: We consider systems of bosons trapped in a box, in the Gross–Pitaevskii regime.
We show that low-energy states exhibit complete Bose–Einstein condensation with
an optimal bound on the number of orthogonal excitations. This extends recent
results obtained in Boccato et al. (Commun Math Phys 359(3):975–1026, 2018), removing
the assumption of small interaction potential.
acknowledgement: "We would like to thank P. T. Nam and R. Seiringer for several useful
discussions and\r\nfor suggesting us to use the localization techniques from [9].
C. Boccato has received funding from the\r\nEuropean Research Council (ERC) under
the programme Horizon 2020 (Grant Agreement 694227). B. Schlein gratefully acknowledges
support from the NCCR SwissMAP and from the Swiss National Foundation of Science
(Grant No. 200020_1726230) through the SNF Grant “Dynamical and energetic properties
of Bose–Einstein condensates”."
article_processing_charge: No
article_type: original
author:
- first_name: Chiara
full_name: Boccato, Chiara
id: 342E7E22-F248-11E8-B48F-1D18A9856A87
last_name: Boccato
- first_name: Christian
full_name: Brennecke, Christian
last_name: Brennecke
- first_name: Serena
full_name: Cenatiempo, Serena
last_name: Cenatiempo
- first_name: Benjamin
full_name: Schlein, Benjamin
last_name: Schlein
citation:
ama: Boccato C, Brennecke C, Cenatiempo S, Schlein B. Optimal rate for Bose-Einstein
condensation in the Gross-Pitaevskii regime. Communications in Mathematical
Physics. 2020;376:1311-1395. doi:10.1007/s00220-019-03555-9
apa: Boccato, C., Brennecke, C., Cenatiempo, S., & Schlein, B. (2020). Optimal
rate for Bose-Einstein condensation in the Gross-Pitaevskii regime. Communications
in Mathematical Physics. Springer. https://doi.org/10.1007/s00220-019-03555-9
chicago: Boccato, Chiara, Christian Brennecke, Serena Cenatiempo, and Benjamin Schlein.
“Optimal Rate for Bose-Einstein Condensation in the Gross-Pitaevskii Regime.”
Communications in Mathematical Physics. Springer, 2020. https://doi.org/10.1007/s00220-019-03555-9.
ieee: C. Boccato, C. Brennecke, S. Cenatiempo, and B. Schlein, “Optimal rate for
Bose-Einstein condensation in the Gross-Pitaevskii regime,” Communications
in Mathematical Physics, vol. 376. Springer, pp. 1311–1395, 2020.
ista: Boccato C, Brennecke C, Cenatiempo S, Schlein B. 2020. Optimal rate for Bose-Einstein
condensation in the Gross-Pitaevskii regime. Communications in Mathematical Physics.
376, 1311–1395.
mla: Boccato, Chiara, et al. “Optimal Rate for Bose-Einstein Condensation in the
Gross-Pitaevskii Regime.” Communications in Mathematical Physics, vol.
376, Springer, 2020, pp. 1311–95, doi:10.1007/s00220-019-03555-9.
short: C. Boccato, C. Brennecke, S. Cenatiempo, B. Schlein, Communications in Mathematical
Physics 376 (2020) 1311–1395.
date_created: 2019-09-24T17:30:59Z
date_published: 2020-06-01T00:00:00Z
date_updated: 2024-02-22T13:33:02Z
day: '01'
department:
- _id: RoSe
doi: 10.1007/s00220-019-03555-9
ec_funded: 1
external_id:
arxiv:
- '1812.03086'
isi:
- '000536053300012'
intvolume: ' 376'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1812.03086
month: '06'
oa: 1
oa_version: Preprint
page: 1311-1395
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '694227'
name: Analysis of quantum many-body systems
publication: Communications in Mathematical Physics
publication_identifier:
eissn:
- 1432-0916
issn:
- 0010-3616
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
status: public
title: Optimal rate for Bose-Einstein condensation in the Gross-Pitaevskii regime
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 376
year: '2020'
...
---
_id: '7410'
abstract:
- lang: eng
text: 'Epiboly is a conserved gastrulation movement describing the thinning and
spreading of a sheet or multi-layer of cells. The zebrafish embryo has emerged
as a vital model system to address the cellular and molecular mechanisms that
drive epiboly. In the zebrafish embryo, the blastoderm, consisting of a simple
squamous epithelium (the enveloping layer) and an underlying mass of deep cells,
as well as a yolk nuclear syncytium (the yolk syncytial layer) undergo epiboly
to internalize the yolk cell during gastrulation. The major events during zebrafish
epiboly are: expansion of the enveloping layer and the internal yolk syncytial
layer, reduction and removal of the yolk membrane ahead of the advancing blastoderm
margin and deep cell rearrangements between the enveloping layer and yolk syncytial
layer to thin the blastoderm. Here, work addressing the cellular and molecular
mechanisms as well as the sources of the mechanical forces that underlie these
events is reviewed. The contribution of recent findings to the current model of
epiboly as well as open questions and future prospects are also discussed.'
article_processing_charge: No
author:
- first_name: Ashley E.E.
full_name: Bruce, Ashley E.E.
last_name: Bruce
- first_name: Carl-Philipp J
full_name: Heisenberg, Carl-Philipp J
id: 39427864-F248-11E8-B48F-1D18A9856A87
last_name: Heisenberg
orcid: 0000-0002-0912-4566
citation:
ama: 'Bruce AEE, Heisenberg C-PJ. Mechanisms of zebrafish epiboly: A current view.
In: Solnica-Krezel L, ed. Gastrulation: From Embryonic Pattern to Form.
Vol 136. Current Topics in Developmental Biology. Elsevier; 2020:319-341. doi:10.1016/bs.ctdb.2019.07.001'
apa: 'Bruce, A. E. E., & Heisenberg, C.-P. J. (2020). Mechanisms of zebrafish
epiboly: A current view. In L. Solnica-Krezel (Ed.), Gastrulation: From Embryonic
Pattern to Form (Vol. 136, pp. 319–341). Elsevier. https://doi.org/10.1016/bs.ctdb.2019.07.001'
chicago: 'Bruce, Ashley E.E., and Carl-Philipp J Heisenberg. “Mechanisms of Zebrafish
Epiboly: A Current View.” In Gastrulation: From Embryonic Pattern to Form,
edited by Lilianna Solnica-Krezel, 136:319–41. Current Topics in Developmental
Biology. Elsevier, 2020. https://doi.org/10.1016/bs.ctdb.2019.07.001.'
ieee: 'A. E. E. Bruce and C.-P. J. Heisenberg, “Mechanisms of zebrafish epiboly:
A current view,” in Gastrulation: From Embryonic Pattern to Form, vol.
136, L. Solnica-Krezel, Ed. Elsevier, 2020, pp. 319–341.'
ista: 'Bruce AEE, Heisenberg C-PJ. 2020.Mechanisms of zebrafish epiboly: A current
view. In: Gastrulation: From Embryonic Pattern to Form. vol. 136, 319–341.'
mla: 'Bruce, Ashley E. E., and Carl-Philipp J. Heisenberg. “Mechanisms of Zebrafish
Epiboly: A Current View.” Gastrulation: From Embryonic Pattern to Form,
edited by Lilianna Solnica-Krezel, vol. 136, Elsevier, 2020, pp. 319–41, doi:10.1016/bs.ctdb.2019.07.001.'
short: 'A.E.E. Bruce, C.-P.J. Heisenberg, in:, L. Solnica-Krezel (Ed.), Gastrulation:
From Embryonic Pattern to Form, Elsevier, 2020, pp. 319–341.'
date_created: 2020-01-30T09:24:06Z
date_published: 2020-01-01T00:00:00Z
date_updated: 2024-02-22T13:23:09Z
day: '01'
department:
- _id: CaHe
doi: 10.1016/bs.ctdb.2019.07.001
editor:
- first_name: 'Lilianna '
full_name: 'Solnica-Krezel, Lilianna '
last_name: Solnica-Krezel
external_id:
isi:
- '000611830600012'
intvolume: ' 136'
isi: 1
language:
- iso: eng
month: '01'
oa_version: None
page: 319-341
publication: 'Gastrulation: From Embryonic Pattern to Form'
publication_identifier:
isbn:
- '9780128127988'
issn:
- 0070-2153
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
series_title: Current Topics in Developmental Biology
status: public
title: 'Mechanisms of zebrafish epiboly: A current view'
type: book_chapter
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 136
year: '2020'
...
---
_id: '6944'
abstract:
- lang: eng
text: 'We study the problem of automatically detecting if a given multi-class classifier
operates outside of its specifications (out-of-specs), i.e. on input data from
a different distribution than what it was trained for. This is an important problem
to solve on the road towards creating reliable computer vision systems for real-world
applications, because the quality of a classifier’s predictions cannot be guaranteed
if it operates out-of-specs. Previously proposed methods for out-of-specs detection
make decisions on the level of single inputs. This, however, is insufficient to
achieve low false positive rate and high false negative rates at the same time.
In this work, we describe a new procedure named KS(conf), based on statistical
reasoning. Its main component is a classical Kolmogorov–Smirnov test that is applied
to the set of predicted confidence values for batches of samples. Working with
batches instead of single samples allows increasing the true positive rate without
negatively affecting the false positive rate, thereby overcoming a crucial limitation
of single sample tests. We show by extensive experiments using a variety of convolutional
network architectures and datasets that KS(conf) reliably detects out-of-specs
situations even under conditions where other tests fail. It furthermore has a
number of properties that make it an excellent candidate for practical deployment:
it is easy to implement, adds almost no overhead to the system, works with any
classifier that outputs confidence scores, and requires no a priori knowledge
about how the data distribution could change.'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Rémy
full_name: Sun, Rémy
last_name: Sun
- first_name: Christoph
full_name: Lampert, Christoph
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
citation:
ama: 'Sun R, Lampert C. KS(conf): A light-weight test if a multiclass classifier
operates outside of its specifications. International Journal of Computer Vision.
2020;128(4):970-995. doi:10.1007/s11263-019-01232-x'
apa: 'Sun, R., & Lampert, C. (2020). KS(conf): A light-weight test if a multiclass
classifier operates outside of its specifications. International Journal of
Computer Vision. Springer Nature. https://doi.org/10.1007/s11263-019-01232-x'
chicago: 'Sun, Rémy, and Christoph Lampert. “KS(Conf): A Light-Weight Test If a
Multiclass Classifier Operates Outside of Its Specifications.” International
Journal of Computer Vision. Springer Nature, 2020. https://doi.org/10.1007/s11263-019-01232-x.'
ieee: 'R. Sun and C. Lampert, “KS(conf): A light-weight test if a multiclass classifier
operates outside of its specifications,” International Journal of Computer
Vision, vol. 128, no. 4. Springer Nature, pp. 970–995, 2020.'
ista: 'Sun R, Lampert C. 2020. KS(conf): A light-weight test if a multiclass classifier
operates outside of its specifications. International Journal of Computer Vision.
128(4), 970–995.'
mla: 'Sun, Rémy, and Christoph Lampert. “KS(Conf): A Light-Weight Test If a Multiclass
Classifier Operates Outside of Its Specifications.” International Journal of
Computer Vision, vol. 128, no. 4, Springer Nature, 2020, pp. 970–95, doi:10.1007/s11263-019-01232-x.'
short: R. Sun, C. Lampert, International Journal of Computer Vision 128 (2020) 970–995.
date_created: 2019-10-14T09:14:28Z
date_published: 2020-04-01T00:00:00Z
date_updated: 2024-02-22T14:57:30Z
day: '01'
ddc:
- '004'
department:
- _id: ChLa
doi: 10.1007/s11263-019-01232-x
ec_funded: 1
external_id:
isi:
- '000494406800001'
file:
- access_level: open_access
checksum: 155e63edf664dcacb3bdc1c2223e606f
content_type: application/pdf
creator: dernst
date_created: 2019-11-26T10:30:02Z
date_updated: 2020-07-14T12:47:45Z
file_id: '7110'
file_name: 2019_IJCV_Sun.pdf
file_size: 1715072
relation: main_file
file_date_updated: 2020-07-14T12:47:45Z
has_accepted_license: '1'
intvolume: ' 128'
isi: 1
issue: '4'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 970-995
project:
- _id: 2532554C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '308036'
name: Lifelong Learning of Visual Scene Understanding
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
publication: International Journal of Computer Vision
publication_identifier:
eissn:
- 1573-1405
issn:
- 0920-5691
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
link:
- relation: erratum
url: https://doi.org/10.1007/s11263-019-01262-5
record:
- id: '6482'
relation: earlier_version
status: public
scopus_import: '1'
status: public
title: 'KS(conf): A light-weight test if a multiclass classifier operates outside
of its specifications'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 128
year: '2020'
...
---
_id: '8324'
abstract:
- lang: eng
text: The notion of program sensitivity (aka Lipschitz continuity) specifies that
changes in the program input result in proportional changes to the program output.
For probabilistic programs the notion is naturally extended to expected sensitivity.
A previous approach develops a relational program logic framework for proving
expected sensitivity of probabilistic while loops, where the number of iterations
is fixed and bounded. In this work, we consider probabilistic while loops where
the number of iterations is not fixed, but randomized and depends on the initial
input values. We present a sound approach for proving expected sensitivity of
such programs. Our sound approach is martingale-based and can be automated through
existing martingale-synthesis algorithms. Furthermore, our approach is compositional
for sequential composition of while loops under a mild side condition. We demonstrate
the effectiveness of our approach on several classical examples from Gambler's
Ruin, stochastic hybrid systems and stochastic gradient descent. We also present
experimental results showing that our automated approach can handle various probabilistic
programs in the literature.
acknowledgement: We thank anonymous reviewers for helpful comments, especially for
pointing to us a scenario of piecewise-linear approximation (Remark5). The research
was partially supported by the National Natural Science Foundation of China (NSFC)
under Grant No. 61802254, 61672229, 61832015,61772336,11871221 and Austrian Science
Fund (FWF) NFN under Grant No. S11407-N23 (RiSE/SHiNE). We thank Prof. Yuxi Fu,
director of the BASICS Lab at Shanghai Jiao Tong University, for his support.
article_number: '25'
article_processing_charge: No
author:
- first_name: Peixin
full_name: Wang, Peixin
last_name: Wang
- first_name: Hongfei
full_name: Fu, Hongfei
last_name: Fu
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Yuxin
full_name: Deng, Yuxin
last_name: Deng
- first_name: Ming
full_name: Xu, Ming
last_name: Xu
citation:
ama: 'Wang P, Fu H, Chatterjee K, Deng Y, Xu M. Proving expected sensitivity of
probabilistic programs with randomized variable-dependent termination time. In:
Proceedings of the ACM on Programming Languages. Vol 4. ACM; 2020. doi:10.1145/3371093'
apa: Wang, P., Fu, H., Chatterjee, K., Deng, Y., & Xu, M. (2020). Proving expected
sensitivity of probabilistic programs with randomized variable-dependent termination
time. In Proceedings of the ACM on Programming Languages (Vol. 4). ACM.
https://doi.org/10.1145/3371093
chicago: Wang, Peixin, Hongfei Fu, Krishnendu Chatterjee, Yuxin Deng, and Ming Xu.
“Proving Expected Sensitivity of Probabilistic Programs with Randomized Variable-Dependent
Termination Time.” In Proceedings of the ACM on Programming Languages,
Vol. 4. ACM, 2020. https://doi.org/10.1145/3371093.
ieee: P. Wang, H. Fu, K. Chatterjee, Y. Deng, and M. Xu, “Proving expected sensitivity
of probabilistic programs with randomized variable-dependent termination time,”
in Proceedings of the ACM on Programming Languages, 2020, vol. 4, no. POPL.
ista: Wang P, Fu H, Chatterjee K, Deng Y, Xu M. 2020. Proving expected sensitivity
of probabilistic programs with randomized variable-dependent termination time.
Proceedings of the ACM on Programming Languages. vol. 4, 25.
mla: Wang, Peixin, et al. “Proving Expected Sensitivity of Probabilistic Programs
with Randomized Variable-Dependent Termination Time.” Proceedings of the ACM
on Programming Languages, vol. 4, no. POPL, 25, ACM, 2020, doi:10.1145/3371093.
short: P. Wang, H. Fu, K. Chatterjee, Y. Deng, M. Xu, in:, Proceedings of the ACM
on Programming Languages, ACM, 2020.
date_created: 2020-08-30T22:01:12Z
date_published: 2020-01-01T00:00:00Z
date_updated: 2024-02-22T15:16:45Z
day: '01'
ddc:
- '004'
department:
- _id: KrCh
doi: 10.1145/3371093
external_id:
arxiv:
- '1902.04744'
file:
- access_level: open_access
checksum: c6193d109ff4ecb17e7a6513d8eb34c0
content_type: application/pdf
creator: cziletti
date_created: 2020-09-01T11:12:58Z
date_updated: 2020-09-01T11:12:58Z
file_id: '8328'
file_name: 2019_ACM_POPL_Wang.pdf
file_size: 564151
relation: main_file
success: 1
file_date_updated: 2020-09-01T11:12:58Z
has_accepted_license: '1'
intvolume: ' 4'
issue: POPL
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11407
name: Game Theory
publication: Proceedings of the ACM on Programming Languages
publication_identifier:
eissn:
- 2475-1421
publication_status: published
publisher: ACM
quality_controlled: '1'
related_material:
link:
- relation: software
url: https://doi.org/10.5281/zenodo.3533633
scopus_import: '1'
status: public
title: Proving expected sensitivity of probabilistic programs with randomized variable-dependent
termination time
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 4
year: '2020'
...
---
_id: '7160'
abstract:
- lang: eng
text: 'Nocturnal animals that rely on their visual system for foraging, mating,
and navigation usually exhibit specific traits associated with living in scotopic
conditions. Most nocturnal birds have several visual specializations, such as
enlarged eyes and an increased orbital convergence. However, the actual role of
binocular vision in nocturnal foraging is still debated. Nightjars (Aves: Caprimulgidae)
are predators that actively pursue and capture flying insects in crepuscular and
nocturnal environments, mainly using a conspicuous “sit-and-wait” tactic on which
pursuit begins with an insect flying over the bird that sits on the ground. In
this study, we describe the visual system of the band-winged nightjar (Systellura
longirostris), with emphasis on anatomical features previously described as relevant
for nocturnal birds. Orbit convergence, determined by 3D scanning of the skull,
was 73.28°. The visual field, determined by ophthalmoscopic reflex, exhibits an
area of maximum binocular overlap of 42°, and it is dorsally oriented. The eyes
showed a nocturnal-like normalized corneal aperture/axial length index. Retinal
ganglion cells (RGCs) were relatively scant, and distributed in an unusual oblique-band
pattern, with higher concentrations in the ventrotemporal quadrant. Together,
these results indicate that the band-winged nightjar exhibits a retinal specialization
associated with the binocular area of their dorsal visual field, a relevant area
for pursuit triggering and prey attacks. The RGC distribution observed is unusual
among birds, but similar to that of some visually dependent insectivorous bats,
suggesting that those features might be convergent in relation to feeding strategies.'
article_processing_charge: No
article_type: original
author:
- first_name: Juan Esteban
full_name: Salazar, Juan Esteban
last_name: Salazar
- first_name: Daniel
full_name: Severin, Daniel
last_name: Severin
- first_name: Tomas A
full_name: Vega Zuniga, Tomas A
id: 2E7C4E78-F248-11E8-B48F-1D18A9856A87
last_name: Vega Zuniga
- first_name: Pedro
full_name: Fernández-Aburto, Pedro
last_name: Fernández-Aburto
- first_name: Alfonso
full_name: Deichler, Alfonso
last_name: Deichler
- first_name: Michel
full_name: Sallaberry A., Michel
last_name: Sallaberry A.
- first_name: Jorge
full_name: Mpodozis, Jorge
last_name: Mpodozis
citation:
ama: 'Salazar JE, Severin D, Vega Zuniga TA, et al. Anatomical specializations related
to foraging in the visual system of a nocturnal insectivorous bird, the band-winged
nightjar (Aves: Caprimulgiformes). Brain, Behavior and Evolution. 2020;94(1-4):27-36.
doi:10.1159/000504162'
apa: 'Salazar, J. E., Severin, D., Vega Zuniga, T. A., Fernández-Aburto, P., Deichler,
A., Sallaberry A., M., & Mpodozis, J. (2020). Anatomical specializations related
to foraging in the visual system of a nocturnal insectivorous bird, the band-winged
nightjar (Aves: Caprimulgiformes). Brain, Behavior and Evolution. Karger
Publishers. https://doi.org/10.1159/000504162'
chicago: 'Salazar, Juan Esteban, Daniel Severin, Tomas A Vega Zuniga, Pedro Fernández-Aburto,
Alfonso Deichler, Michel Sallaberry A., and Jorge Mpodozis. “Anatomical Specializations
Related to Foraging in the Visual System of a Nocturnal Insectivorous Bird, the
Band-Winged Nightjar (Aves: Caprimulgiformes).” Brain, Behavior and Evolution.
Karger Publishers, 2020. https://doi.org/10.1159/000504162.'
ieee: 'J. E. Salazar et al., “Anatomical specializations related to foraging
in the visual system of a nocturnal insectivorous bird, the band-winged nightjar
(Aves: Caprimulgiformes),” Brain, Behavior and Evolution, vol. 94, no.
1–4. Karger Publishers, pp. 27–36, 2020.'
ista: 'Salazar JE, Severin D, Vega Zuniga TA, Fernández-Aburto P, Deichler A, Sallaberry A.
M, Mpodozis J. 2020. Anatomical specializations related to foraging in the visual
system of a nocturnal insectivorous bird, the band-winged nightjar (Aves: Caprimulgiformes).
Brain, Behavior and Evolution. 94(1–4), 27–36.'
mla: 'Salazar, Juan Esteban, et al. “Anatomical Specializations Related to Foraging
in the Visual System of a Nocturnal Insectivorous Bird, the Band-Winged Nightjar
(Aves: Caprimulgiformes).” Brain, Behavior and Evolution, vol. 94, no.
1–4, Karger Publishers, 2020, pp. 27–36, doi:10.1159/000504162.'
short: J.E. Salazar, D. Severin, T.A. Vega Zuniga, P. Fernández-Aburto, A. Deichler,
M. Sallaberry A., J. Mpodozis, Brain, Behavior and Evolution 94 (2020) 27–36.
date_created: 2019-12-09T09:04:13Z
date_published: 2020-01-01T00:00:00Z
date_updated: 2024-02-22T15:18:34Z
day: '01'
department:
- _id: MaJö
doi: 10.1159/000504162
external_id:
isi:
- '000522856600004'
pmid:
- '31751995'
intvolume: ' 94'
isi: 1
issue: 1-4
language:
- iso: eng
month: '01'
oa_version: None
page: 27-36
pmid: 1
publication: Brain, Behavior and Evolution
publication_identifier:
eissn:
- 1421-9743
issn:
- 0006-8977
publication_status: published
publisher: Karger Publishers
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Anatomical specializations related to foraging in the visual system of a nocturnal
insectivorous bird, the band-winged nightjar (Aves: Caprimulgiformes)'
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 94
year: '2020'
...
---
_id: '6184'
abstract:
- lang: eng
text: We prove edge universality for a general class of correlated real symmetric
or complex Hermitian Wigner matrices with arbitrary expectation. Our theorem also
applies to internal edges of the self-consistent density of states. In particular,
we establish a strong form of band rigidity which excludes mismatches between
location and label of eigenvalues close to internal edges in these general models.
article_processing_charge: No
article_type: original
author:
- first_name: Johannes
full_name: Alt, Johannes
id: 36D3D8B6-F248-11E8-B48F-1D18A9856A87
last_name: Alt
- first_name: László
full_name: Erdös, László
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
- first_name: Torben H
full_name: Krüger, Torben H
id: 3020C786-F248-11E8-B48F-1D18A9856A87
last_name: Krüger
orcid: 0000-0002-4821-3297
- first_name: Dominik J
full_name: Schröder, Dominik J
id: 408ED176-F248-11E8-B48F-1D18A9856A87
last_name: Schröder
orcid: 0000-0002-2904-1856
citation:
ama: 'Alt J, Erdös L, Krüger TH, Schröder DJ. Correlated random matrices: Band rigidity
and edge universality. Annals of Probability. 2020;48(2):963-1001. doi:10.1214/19-AOP1379'
apa: 'Alt, J., Erdös, L., Krüger, T. H., & Schröder, D. J. (2020). Correlated
random matrices: Band rigidity and edge universality. Annals of Probability.
Institute of Mathematical Statistics. https://doi.org/10.1214/19-AOP1379'
chicago: 'Alt, Johannes, László Erdös, Torben H Krüger, and Dominik J Schröder.
“Correlated Random Matrices: Band Rigidity and Edge Universality.” Annals of
Probability. Institute of Mathematical Statistics, 2020. https://doi.org/10.1214/19-AOP1379.'
ieee: 'J. Alt, L. Erdös, T. H. Krüger, and D. J. Schröder, “Correlated random matrices:
Band rigidity and edge universality,” Annals of Probability, vol. 48, no.
2. Institute of Mathematical Statistics, pp. 963–1001, 2020.'
ista: 'Alt J, Erdös L, Krüger TH, Schröder DJ. 2020. Correlated random matrices:
Band rigidity and edge universality. Annals of Probability. 48(2), 963–1001.'
mla: 'Alt, Johannes, et al. “Correlated Random Matrices: Band Rigidity and Edge
Universality.” Annals of Probability, vol. 48, no. 2, Institute of Mathematical
Statistics, 2020, pp. 963–1001, doi:10.1214/19-AOP1379.'
short: J. Alt, L. Erdös, T.H. Krüger, D.J. Schröder, Annals of Probability 48 (2020)
963–1001.
date_created: 2019-03-28T09:20:08Z
date_published: 2020-03-01T00:00:00Z
date_updated: 2024-02-22T14:34:33Z
day: '01'
department:
- _id: LaEr
doi: 10.1214/19-AOP1379
ec_funded: 1
external_id:
arxiv:
- '1804.07744'
isi:
- '000528269100013'
intvolume: ' 48'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1804.07744
month: '03'
oa: 1
oa_version: Preprint
page: 963-1001
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '338804'
name: Random matrices, universality and disordered quantum systems
publication: Annals of Probability
publication_identifier:
issn:
- 0091-1798
publication_status: published
publisher: Institute of Mathematical Statistics
quality_controlled: '1'
related_material:
record:
- id: '149'
relation: dissertation_contains
status: public
- id: '6179'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: 'Correlated random matrices: Band rigidity and edge universality'
type: journal_article
user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87
volume: 48
year: '2020'
...
---
_id: '15037'
abstract:
- lang: eng
text: Protein abundance and localization at the plasma membrane (PM) shapes plant
development and mediates adaptation to changing environmental conditions. It is
regulated by ubiquitination, a post-translational modification crucial for the
proper sorting of endocytosed PM proteins to the vacuole for subsequent degradation.
To understand the significance and the variety of roles played by this reversible
modification, the function of ubiquitin receptors, which translate the ubiquitin
signature into a cellular response, needs to be elucidated. In this study, we
show that TOL (TOM1-like) proteins function in plants as multivalent ubiquitin
receptors, governing ubiquitinated cargo delivery to the vacuole via the conserved
Endosomal Sorting Complex Required for Transport (ESCRT) pathway. TOL2 and TOL6
interact with components of the ESCRT machinery and bind to K63-linked ubiquitin
via two tandemly arranged conserved ubiquitin-binding domains. Mutation of these
domains results not only in a loss of ubiquitin binding but also altered localization,
abolishing TOL6 ubiquitin receptor activity. Function and localization of TOL6
is itself regulated by ubiquitination, whereby TOL6 ubiquitination potentially
modulates degradation of PM-localized cargoes, assisting in the fine-tuning of
the delicate interplay between protein recycling and downregulation. Taken together,
our findings demonstrate the function and regulation of a ubiquitin receptor that
mediates vacuolar degradation of PM proteins in higher plants.
article_processing_charge: No
article_type: original
author:
- first_name: Jeanette
full_name: Moulinier-Anzola, Jeanette
last_name: Moulinier-Anzola
- first_name: Maximilian
full_name: Schwihla, Maximilian
last_name: Schwihla
- first_name: Lucinda
full_name: De-Araújo, Lucinda
last_name: De-Araújo
- first_name: Christina
full_name: Artner, Christina
id: 45DF286A-F248-11E8-B48F-1D18A9856A87
last_name: Artner
- first_name: Lisa
full_name: Jörg, Lisa
last_name: Jörg
- first_name: Nataliia
full_name: Konstantinova, Nataliia
last_name: Konstantinova
- first_name: Christian
full_name: Luschnig, Christian
last_name: Luschnig
- first_name: Barbara
full_name: Korbei, Barbara
last_name: Korbei
citation:
ama: Moulinier-Anzola J, Schwihla M, De-Araújo L, et al. TOLs function as ubiquitin
receptors in the early steps of the ESCRT pathway in higher plants. Molecular
Plant. 2020;13(5):717-731. doi:10.1016/j.molp.2020.02.012
apa: Moulinier-Anzola, J., Schwihla, M., De-Araújo, L., Artner, C., Jörg, L., Konstantinova,
N., … Korbei, B. (2020). TOLs function as ubiquitin receptors in the early steps
of the ESCRT pathway in higher plants. Molecular Plant. Elsevier. https://doi.org/10.1016/j.molp.2020.02.012
chicago: Moulinier-Anzola, Jeanette, Maximilian Schwihla, Lucinda De-Araújo, Christina
Artner, Lisa Jörg, Nataliia Konstantinova, Christian Luschnig, and Barbara Korbei.
“TOLs Function as Ubiquitin Receptors in the Early Steps of the ESCRT Pathway
in Higher Plants.” Molecular Plant. Elsevier, 2020. https://doi.org/10.1016/j.molp.2020.02.012.
ieee: J. Moulinier-Anzola et al., “TOLs function as ubiquitin receptors in
the early steps of the ESCRT pathway in higher plants,” Molecular Plant,
vol. 13, no. 5. Elsevier, pp. 717–731, 2020.
ista: Moulinier-Anzola J, Schwihla M, De-Araújo L, Artner C, Jörg L, Konstantinova
N, Luschnig C, Korbei B. 2020. TOLs function as ubiquitin receptors in the early
steps of the ESCRT pathway in higher plants. Molecular Plant. 13(5), 717–731.
mla: Moulinier-Anzola, Jeanette, et al. “TOLs Function as Ubiquitin Receptors in
the Early Steps of the ESCRT Pathway in Higher Plants.” Molecular Plant,
vol. 13, no. 5, Elsevier, 2020, pp. 717–31, doi:10.1016/j.molp.2020.02.012.
short: J. Moulinier-Anzola, M. Schwihla, L. De-Araújo, C. Artner, L. Jörg, N. Konstantinova,
C. Luschnig, B. Korbei, Molecular Plant 13 (2020) 717–731.
date_created: 2024-02-28T08:55:56Z
date_published: 2020-05-04T00:00:00Z
date_updated: 2024-02-28T12:41:52Z
day: '04'
ddc:
- '580'
department:
- _id: EvBe
doi: 10.1016/j.molp.2020.02.012
external_id:
pmid:
- '32087370'
file:
- access_level: open_access
checksum: c538a5008f7827f62d17d40a3bfabe65
content_type: application/pdf
creator: dernst
date_created: 2024-02-28T12:39:56Z
date_updated: 2024-02-28T12:39:56Z
file_id: '15038'
file_name: 2020_MolecularPlant_MoulinierAnzola.pdf
file_size: 3089212
relation: main_file
success: 1
file_date_updated: 2024-02-28T12:39:56Z
has_accepted_license: '1'
intvolume: ' 13'
issue: '5'
keyword:
- Plant Science
- Molecular Biology
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 717-731
pmid: 1
publication: Molecular Plant
publication_identifier:
issn:
- 1674-2052
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: TOLs function as ubiquitin receptors in the early steps of the ESCRT pathway
in higher plants
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2020'
...
---
_id: '15036'
abstract:
- lang: eng
text: The assembly of a septin filament requires that homologous monomers must distinguish
between one another in establishing appropriate interfaces with their neighbors.
To understand this phenomenon at the molecular level, we present the first four
crystal structures of heterodimeric septin complexes. We describe in detail the
two distinct types of G-interface present within the octameric particles, which
must polymerize to form filaments. These are formed between SEPT2 and SEPT6 and
between SEPT7 and SEPT3, and their description permits an understanding of the
structural basis for the selectivity necessary for correct filament assembly.
By replacing SEPT6 by SEPT8 or SEPT11, it is possible to rationalize Kinoshita's
postulate, which predicts the exchangeability of septins from within a subgroup.
Switches I and II, which in classical small GTPases provide a mechanism for nucleotide-dependent
conformational change, have been repurposed in septins to play a fundamental role
in molecular recognition. Specifically, it is switch I which holds the key to
discriminating between the two different G-interfaces. Moreover, residues which
are characteristic for a given subgroup play subtle, but pivotal, roles in guaranteeing
that the correct interfaces are formed.
article_processing_charge: No
article_type: original
author:
- first_name: Higor Vinícius Dias
full_name: Rosa, Higor Vinícius Dias
last_name: Rosa
- first_name: Diego Antonio
full_name: Leonardo, Diego Antonio
last_name: Leonardo
- first_name: Gabriel
full_name: Brognara, Gabriel
id: D96FFDA0-A884-11E9-9968-DC26E6697425
last_name: Brognara
- first_name: José
full_name: Brandão-Neto, José
last_name: Brandão-Neto
- first_name: Humberto
full_name: D'Muniz Pereira, Humberto
last_name: D'Muniz Pereira
- first_name: Ana Paula Ulian
full_name: Araújo, Ana Paula Ulian
last_name: Araújo
- first_name: Richard Charles
full_name: Garratt, Richard Charles
last_name: Garratt
citation:
ama: 'Rosa HVD, Leonardo DA, Brognara G, et al. Molecular recognition at septin
interfaces: The switches hold the key. Journal of Molecular Biology. 2020;432(21):5784-5801.
doi:10.1016/j.jmb.2020.09.001'
apa: 'Rosa, H. V. D., Leonardo, D. A., Brognara, G., Brandão-Neto, J., D’Muniz Pereira,
H., Araújo, A. P. U., & Garratt, R. C. (2020). Molecular recognition at septin
interfaces: The switches hold the key. Journal of Molecular Biology. Elsevier.
https://doi.org/10.1016/j.jmb.2020.09.001'
chicago: 'Rosa, Higor Vinícius Dias, Diego Antonio Leonardo, Gabriel Brognara, José
Brandão-Neto, Humberto D’Muniz Pereira, Ana Paula Ulian Araújo, and Richard Charles
Garratt. “Molecular Recognition at Septin Interfaces: The Switches Hold the Key.”
Journal of Molecular Biology. Elsevier, 2020. https://doi.org/10.1016/j.jmb.2020.09.001.'
ieee: 'H. V. D. Rosa et al., “Molecular recognition at septin interfaces:
The switches hold the key,” Journal of Molecular Biology, vol. 432, no.
21. Elsevier, pp. 5784–5801, 2020.'
ista: 'Rosa HVD, Leonardo DA, Brognara G, Brandão-Neto J, D’Muniz Pereira H, Araújo
APU, Garratt RC. 2020. Molecular recognition at septin interfaces: The switches
hold the key. Journal of Molecular Biology. 432(21), 5784–5801.'
mla: 'Rosa, Higor Vinícius Dias, et al. “Molecular Recognition at Septin Interfaces:
The Switches Hold the Key.” Journal of Molecular Biology, vol. 432, no.
21, Elsevier, 2020, pp. 5784–801, doi:10.1016/j.jmb.2020.09.001.'
short: H.V.D. Rosa, D.A. Leonardo, G. Brognara, J. Brandão-Neto, H. D’Muniz Pereira,
A.P.U. Araújo, R.C. Garratt, Journal of Molecular Biology 432 (2020) 5784–5801.
date_created: 2024-02-28T08:50:34Z
date_published: 2020-10-02T00:00:00Z
date_updated: 2024-02-28T12:37:54Z
day: '02'
department:
- _id: MaLo
doi: 10.1016/j.jmb.2020.09.001
external_id:
pmid:
- '32910969'
intvolume: ' 432'
issue: '21'
keyword:
- Molecular Biology
- Structural Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.jmb.2020.09.001
month: '10'
oa: 1
oa_version: Published Version
page: 5784-5801
pmid: 1
publication: Journal of Molecular Biology
publication_identifier:
issn:
- 0022-2836
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: 'Molecular recognition at septin interfaces: The switches hold the key'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 432
year: '2020'
...
---
_id: '8384'
abstract:
- lang: eng
text: Previous research on animations of soap bubbles, films, and foams largely
focuses on the motion and geometric shape of the bubble surface. These works neglect
the evolution of the bubble’s thickness, which is normally responsible for visual
phenomena like surface vortices, Newton’s interference patterns, capillary waves,
and deformation-dependent rupturing of films in a foam. In this paper, we model
these natural phenomena by introducing the film thickness as a reduced degree
of freedom in the Navier-Stokes equations and deriving their equations of motion.
We discretize the equations on a nonmanifold triangle mesh surface and couple
it to an existing bubble solver. In doing so, we also introduce an incompressible
fluid solver for 2.5D films and a novel advection algorithm for convecting fields
across non-manifold surface junctions. Our simulations enhance state-of-the-art
bubble solvers with additional effects caused by convection, rippling, draining,
and evaporation of the thin film.
acknowledged_ssus:
- _id: ScienComp
acknowledgement: "We wish to thank the anonymous reviewers and the members of the
Visual Computing Group at IST Austria for their valuable feedback, especially Camille
Schreck for her help in rendering. This research was supported by the Scientific
Service Units (SSU) of IST Austria through resources provided by Scientific Computing.
We would like to thank the authors of [Belcour and Barla 2017] for providing their
implementation, the authors of [Atkins and Elliott 2010] and [Seychelles et al.
2008] for allowing us to use their results, and Rok Grah for helpful discussions.
Finally, we thank Ryoichi Ando for many discussions from the beginning of the project
that resulted in important contents of the paper including our formulation, numerical
scheme, and initial implementation. This project has received funding from the\r\nEuropean
Research Council (ERC) under the European Union’s Horizon 2020 research and innovation
programme under grant agreement No. 638176."
article_number: '31'
article_processing_charge: No
article_type: original
author:
- first_name: Sadashige
full_name: Ishida, Sadashige
id: 6F7C4B96-A8E9-11E9-A7CA-09ECE5697425
last_name: Ishida
- first_name: Peter
full_name: Synak, Peter
id: 331776E2-F248-11E8-B48F-1D18A9856A87
last_name: Synak
- first_name: Fumiya
full_name: Narita, Fumiya
last_name: Narita
- first_name: Toshiya
full_name: Hachisuka, Toshiya
last_name: Hachisuka
- first_name: Christopher J
full_name: Wojtan, Christopher J
id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
last_name: Wojtan
orcid: 0000-0001-6646-5546
citation:
ama: Ishida S, Synak P, Narita F, Hachisuka T, Wojtan C. A model for soap film dynamics
with evolving thickness. ACM Transactions on Graphics. 2020;39(4). doi:10.1145/3386569.3392405
apa: Ishida, S., Synak, P., Narita, F., Hachisuka, T., & Wojtan, C. (2020).
A model for soap film dynamics with evolving thickness. ACM Transactions on
Graphics. Association for Computing Machinery. https://doi.org/10.1145/3386569.3392405
chicago: Ishida, Sadashige, Peter Synak, Fumiya Narita, Toshiya Hachisuka, and Chris
Wojtan. “A Model for Soap Film Dynamics with Evolving Thickness.” ACM Transactions
on Graphics. Association for Computing Machinery, 2020. https://doi.org/10.1145/3386569.3392405.
ieee: S. Ishida, P. Synak, F. Narita, T. Hachisuka, and C. Wojtan, “A model for
soap film dynamics with evolving thickness,” ACM Transactions on Graphics,
vol. 39, no. 4. Association for Computing Machinery, 2020.
ista: Ishida S, Synak P, Narita F, Hachisuka T, Wojtan C. 2020. A model for soap
film dynamics with evolving thickness. ACM Transactions on Graphics. 39(4), 31.
mla: Ishida, Sadashige, et al. “A Model for Soap Film Dynamics with Evolving Thickness.”
ACM Transactions on Graphics, vol. 39, no. 4, 31, Association for Computing
Machinery, 2020, doi:10.1145/3386569.3392405.
short: S. Ishida, P. Synak, F. Narita, T. Hachisuka, C. Wojtan, ACM Transactions
on Graphics 39 (2020).
date_created: 2020-09-13T22:01:18Z
date_published: 2020-07-08T00:00:00Z
date_updated: 2024-02-28T12:57:31Z
day: '08'
ddc:
- '000'
department:
- _id: ChWo
doi: 10.1145/3386569.3392405
ec_funded: 1
external_id:
isi:
- '000583700300004'
file:
- access_level: open_access
checksum: 813831ca91319d794d9748c276b24578
content_type: application/pdf
creator: dernst
date_created: 2020-11-23T09:03:19Z
date_updated: 2020-11-23T09:03:19Z
file_id: '8795'
file_name: 2020_soapfilm_submitted.pdf
file_size: 14935529
relation: main_file
success: 1
file_date_updated: 2020-11-23T09:03:19Z
has_accepted_license: '1'
intvolume: ' 39'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1145/3386569.3392405
month: '07'
oa: 1
oa_version: Submitted Version
project:
- _id: 2533E772-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '638176'
name: Efficient Simulation of Natural Phenomena at Extremely Large Scales
publication: ACM Transactions on Graphics
publication_identifier:
eissn:
- '15577368'
issn:
- '07300301'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: A model for soap film dynamics with evolving thickness
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 39
year: '2020'
...
---
_id: '7802'
abstract:
- lang: eng
text: "The Massively Parallel Computation (MPC) model is an emerging model which
distills core aspects of distributed and parallel computation. It has been developed
as a tool to solve (typically graph) problems in systems where the input is distributed
over many machines with limited space.\r\n\t\r\nRecent work has focused on the
regime in which machines have sublinear (in $n$, the number of nodes in the input
graph) space, with randomized algorithms presented for fundamental graph problems
of Maximal Matching and Maximal Independent Set. However, there have been no prior
corresponding deterministic algorithms.\r\n\t\r\n\tA major challenge underlying
the sublinear space setting is that the local space of each machine might be too
small to store all the edges incident to a single node. This poses a considerable
obstacle compared to the classical models in which each node is assumed to know
and have easy access to its incident edges. To overcome this barrier we introduce
a new graph sparsification technique that deterministically computes a low-degree
subgraph with additional desired properties. The degree of the nodes in this subgraph
is small in the sense that the edges of each node can be now stored on a single
machine. This low-degree subgraph also has the property that solving the problem
on this subgraph provides \\emph{significant} global progress, i.e., progress
towards solving the problem for the original input graph.\r\n\t\r\nUsing this
framework to derandomize the well-known randomized algorithm of Luby [SICOMP'86],
we obtain $O(\\log \\Delta+\\log\\log n)$-round deterministic MPC algorithms for
solving the fundamental problems of Maximal Matching and Maximal Independent Set
with $O(n^{\\epsilon})$ space on each machine for any constant $\\epsilon > 0$.
Based on the recent work of Ghaffari et al. [FOCS'18], this additive $O(\\log\\log
n)$ factor is conditionally essential. These algorithms can also be shown to run
in $O(\\log \\Delta)$ rounds in the closely related model of CONGESTED CLIQUE,
improving upon the state-of-the-art bound of $O(\\log^2 \\Delta)$ rounds by Censor-Hillel
et al. [DISC'17]."
article_processing_charge: No
author:
- first_name: Artur
full_name: Czumaj, Artur
last_name: Czumaj
orcid: 0000-0002-5646-9524
- first_name: Peter
full_name: Davies, Peter
id: 11396234-BB50-11E9-B24C-90FCE5697425
last_name: Davies
orcid: 0000-0002-5646-9524
- first_name: Merav
full_name: Parter, Merav
last_name: Parter
citation:
ama: 'Czumaj A, Davies P, Parter M. Graph sparsification for derandomizing massively
parallel computation with low space. In: Proceedings of the 32nd ACM Symposium
on Parallelism in Algorithms and Architectures (SPAA 2020). Association for
Computing Machinery; 2020:175-185. doi:10.1145/3350755.3400282'
apa: 'Czumaj, A., Davies, P., & Parter, M. (2020). Graph sparsification for
derandomizing massively parallel computation with low space. In Proceedings
of the 32nd ACM Symposium on Parallelism in Algorithms and Architectures (SPAA
2020) (pp. 175–185). Virtual Event, United States: Association for Computing
Machinery. https://doi.org/10.1145/3350755.3400282'
chicago: Czumaj, Artur, Peter Davies, and Merav Parter. “Graph Sparsification for
Derandomizing Massively Parallel Computation with Low Space.” In Proceedings
of the 32nd ACM Symposium on Parallelism in Algorithms and Architectures (SPAA
2020), 175–85. Association for Computing Machinery, 2020. https://doi.org/10.1145/3350755.3400282.
ieee: A. Czumaj, P. Davies, and M. Parter, “Graph sparsification for derandomizing
massively parallel computation with low space,” in Proceedings of the 32nd
ACM Symposium on Parallelism in Algorithms and Architectures (SPAA 2020),
Virtual Event, United States, 2020, no. 7, pp. 175–185.
ista: 'Czumaj A, Davies P, Parter M. 2020. Graph sparsification for derandomizing
massively parallel computation with low space. Proceedings of the 32nd ACM Symposium
on Parallelism in Algorithms and Architectures (SPAA 2020). SPAA: Symposium on
Parallelism in Algorithms and Architectures, 175–185.'
mla: Czumaj, Artur, et al. “Graph Sparsification for Derandomizing Massively Parallel
Computation with Low Space.” Proceedings of the 32nd ACM Symposium on Parallelism
in Algorithms and Architectures (SPAA 2020), no. 7, Association for Computing
Machinery, 2020, pp. 175–85, doi:10.1145/3350755.3400282.
short: A. Czumaj, P. Davies, M. Parter, in:, Proceedings of the 32nd ACM Symposium
on Parallelism in Algorithms and Architectures (SPAA 2020), Association for Computing
Machinery, 2020, pp. 175–185.
conference:
end_date: 2020-07-17
location: Virtual Event, United States
name: 'SPAA: Symposium on Parallelism in Algorithms and Architectures'
start_date: 2020-07-15
date_created: 2020-05-06T08:53:34Z
date_published: 2020-07-01T00:00:00Z
date_updated: 2024-02-28T12:53:09Z
day: '01'
department:
- _id: DaAl
doi: 10.1145/3350755.3400282
ec_funded: 1
external_id:
arxiv:
- '1912.05390'
isi:
- '000744436200015'
isi: 1
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1912.05390
month: '07'
oa: 1
oa_version: Preprint
page: 175-185
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Proceedings of the 32nd ACM Symposium on Parallelism in Algorithms and
Architectures (SPAA 2020)
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
related_material:
record:
- id: '9541'
relation: later_version
status: public
scopus_import: '1'
status: public
title: Graph sparsification for derandomizing massively parallel computation with
low space
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
year: '2020'
...
---
_id: '7636'
abstract:
- lang: eng
text: "Balanced search trees typically use key comparisons to guide their operations,
and achieve logarithmic running time. By relying on numerical properties of the
keys, interpolation search achieves lower search complexity and better performance.
Although interpolation-based data structures were investigated in the past, their
non-blocking concurrent variants have received very little attention so far.\r\nIn
this paper, we propose the first non-blocking implementation of the classic interpolation
search tree (IST) data structure. For arbitrary key distributions, the data structure
ensures worst-case O(log n + p) amortized time for search, insertion and deletion
traversals. When the input key distributions are smooth, lookups run in expected
O(log log n + p) time, and insertion and deletion run in expected amortized O(log
log n + p) time, where p is a bound on the number of threads. To improve the scalability
of concurrent insertion and deletion, we propose a novel parallel rebuilding technique,
which should be of independent interest.\r\nWe evaluate whether the theoretical
improvements translate to practice by implementing the concurrent interpolation
search tree, and benchmarking it on uniform and nonuniform key distributions,
for dataset sizes in the millions to billions of keys. Relative to the state-of-the-art
concurrent data structures, the concurrent interpolation search tree achieves
performance improvements of up to 15% under high update rates, and of up to 50%
under moderate update rates. Further, ISTs exhibit up to 2X less cache-misses,
and consume 1.2 -- 2.6X less memory compared to the next best alternative on typical
dataset sizes. We find that the results are surprisingly robust to distributional
skew, which suggests that our data structure can be a promising alternative to
classic concurrent search structures."
acknowledgement: "This project has received funding from the European Research Council
(ERC) under the European Union Horizon 2020 research and innovation program, grant
agreement No 805223, ERC Starting Grant ScaleML. We acknowledge the support of the
Natural Sciences and\r\nEngineering Research Council of Canada (NSERC). "
article_processing_charge: No
author:
- first_name: Trevor A
full_name: Brown, Trevor A
id: 3569F0A0-F248-11E8-B48F-1D18A9856A87
last_name: Brown
- first_name: Aleksandar
full_name: Prokopec, Aleksandar
last_name: Prokopec
- first_name: Dan-Adrian
full_name: Alistarh, Dan-Adrian
id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
last_name: Alistarh
orcid: 0000-0003-3650-940X
citation:
ama: 'Brown TA, Prokopec A, Alistarh D-A. Non-blocking interpolation search trees
with doubly-logarithmic running time. In: Proceedings of the ACM SIGPLAN Symposium
on Principles and Practice of Parallel Programming. Association for Computing
Machinery; 2020:276-291. doi:10.1145/3332466.3374542'
apa: 'Brown, T. A., Prokopec, A., & Alistarh, D.-A. (2020). Non-blocking interpolation
search trees with doubly-logarithmic running time. In Proceedings of the ACM
SIGPLAN Symposium on Principles and Practice of Parallel Programming (pp.
276–291). San Diego, CA, United States: Association for Computing Machinery. https://doi.org/10.1145/3332466.3374542'
chicago: Brown, Trevor A, Aleksandar Prokopec, and Dan-Adrian Alistarh. “Non-Blocking
Interpolation Search Trees with Doubly-Logarithmic Running Time.” In Proceedings
of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming,
276–91. Association for Computing Machinery, 2020. https://doi.org/10.1145/3332466.3374542.
ieee: T. A. Brown, A. Prokopec, and D.-A. Alistarh, “Non-blocking interpolation
search trees with doubly-logarithmic running time,” in Proceedings of the ACM
SIGPLAN Symposium on Principles and Practice of Parallel Programming, San
Diego, CA, United States, 2020, pp. 276–291.
ista: 'Brown TA, Prokopec A, Alistarh D-A. 2020. Non-blocking interpolation search
trees with doubly-logarithmic running time. Proceedings of the ACM SIGPLAN Symposium
on Principles and Practice of Parallel Programming. PPOPP: Principles and Practice
of Parallel Programming, 276–291.'
mla: Brown, Trevor A., et al. “Non-Blocking Interpolation Search Trees with Doubly-Logarithmic
Running Time.” Proceedings of the ACM SIGPLAN Symposium on Principles and Practice
of Parallel Programming, Association for Computing Machinery, 2020, pp. 276–91,
doi:10.1145/3332466.3374542.
short: T.A. Brown, A. Prokopec, D.-A. Alistarh, in:, Proceedings of the ACM SIGPLAN
Symposium on Principles and Practice of Parallel Programming, Association for
Computing Machinery, 2020, pp. 276–291.
conference:
end_date: 2020-02-26
location: San Diego, CA, United States
name: 'PPOPP: Principles and Practice of Parallel Programming'
start_date: 2020-02-22
date_created: 2020-04-05T22:00:49Z
date_published: 2020-02-19T00:00:00Z
date_updated: 2024-02-28T12:55:14Z
day: '19'
department:
- _id: DaAl
doi: 10.1145/3332466.3374542
ec_funded: 1
external_id:
isi:
- '000564476500020'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1145/3332466.3374542
month: '02'
oa: 1
oa_version: Published Version
page: 276-291
project:
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '805223'
name: Elastic Coordination for Scalable Machine Learning
publication: Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of
Parallel Programming
publication_identifier:
isbn:
- '9781450368186'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Non-blocking interpolation search trees with doubly-logarithmic running time
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '8191'
abstract:
- lang: eng
text: "There has been a significant amount of research on hardware and software
support for efficient concurrent data structures; yet, the question of how to
build correct, simple, and scalable data structures has not yet been definitively
settled. In this paper, we revisit this question from a minimalist perspective,
and ask: what is the smallest amount of synchronization required for correct and
efficient concurrent search data structures, and how could this minimal synchronization
support be provided in hardware?\r\n\r\nTo address these questions, we introduce
memory tagging, a simple hardware mechanism which enables the programmer to \"tag\"
a dynamic set of memory locations, at cache-line granularity, and later validate
whether the memory has been concurrently modified, with the possibility of updating
one of the underlying locations atomically if validation succeeds. We provide
several examples showing that this mechanism can enable fast and arguably simple
concurrent data structure designs, such as lists, binary search trees, balanced
search trees, range queries, and Software Transactional Memory (STM) implementations.
We provide an implementation of memory tags in the Graphite multi-core simulator,
showing that the mechanism can be implemented entirely at the level of L1 cache,
and that it can enable non-trivial speedups versus existing implementations of
the above data structures."
article_processing_charge: No
author:
- first_name: Dan-Adrian
full_name: Alistarh, Dan-Adrian
id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
last_name: Alistarh
orcid: 0000-0003-3650-940X
- first_name: Trevor A
full_name: Brown, Trevor A
id: 3569F0A0-F248-11E8-B48F-1D18A9856A87
last_name: Brown
- first_name: Nandini
full_name: Singhal, Nandini
last_name: Singhal
citation:
ama: 'Alistarh D-A, Brown TA, Singhal N. Memory tagging: Minimalist synchronization
for scalable concurrent data structures. In: Annual ACM Symposium on Parallelism
in Algorithms and Architectures. Association for Computing Machinery; 2020:37-49.
doi:10.1145/3350755.3400213'
apa: 'Alistarh, D.-A., Brown, T. A., & Singhal, N. (2020). Memory tagging: Minimalist
synchronization for scalable concurrent data structures. In Annual ACM Symposium
on Parallelism in Algorithms and Architectures (pp. 37–49). Virtual Event,
United States: Association for Computing Machinery. https://doi.org/10.1145/3350755.3400213'
chicago: 'Alistarh, Dan-Adrian, Trevor A Brown, and Nandini Singhal. “Memory Tagging:
Minimalist Synchronization for Scalable Concurrent Data Structures.” In Annual
ACM Symposium on Parallelism in Algorithms and Architectures, 37–49. Association
for Computing Machinery, 2020. https://doi.org/10.1145/3350755.3400213.'
ieee: 'D.-A. Alistarh, T. A. Brown, and N. Singhal, “Memory tagging: Minimalist
synchronization for scalable concurrent data structures,” in Annual ACM Symposium
on Parallelism in Algorithms and Architectures, Virtual Event, United States,
2020, no. 7, pp. 37–49.'
ista: 'Alistarh D-A, Brown TA, Singhal N. 2020. Memory tagging: Minimalist synchronization
for scalable concurrent data structures. Annual ACM Symposium on Parallelism in
Algorithms and Architectures. SPAA: Symposium on Parallelism in Algorithms and
Architectures, 37–49.'
mla: 'Alistarh, Dan-Adrian, et al. “Memory Tagging: Minimalist Synchronization for
Scalable Concurrent Data Structures.” Annual ACM Symposium on Parallelism in
Algorithms and Architectures, no. 7, Association for Computing Machinery,
2020, pp. 37–49, doi:10.1145/3350755.3400213.'
short: D.-A. Alistarh, T.A. Brown, N. Singhal, in:, Annual ACM Symposium on Parallelism
in Algorithms and Architectures, Association for Computing Machinery, 2020, pp.
37–49.
conference:
end_date: 2020-07-17
location: Virtual Event, United States
name: 'SPAA: Symposium on Parallelism in Algorithms and Architectures'
start_date: 2020-07-15
date_created: 2020-08-02T22:00:58Z
date_published: 2020-07-06T00:00:00Z
date_updated: 2024-02-28T12:56:32Z
day: '06'
department:
- _id: DaAl
doi: 10.1145/3350755.3400213
external_id:
isi:
- '000744436200004'
isi: 1
issue: '7'
language:
- iso: eng
month: '07'
oa_version: None
page: 37-49
publication: Annual ACM Symposium on Parallelism in Algorithms and Architectures
publication_identifier:
isbn:
- '9781450369350'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Memory tagging: Minimalist synchronization for scalable concurrent data structures'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7635'
abstract:
- lang: eng
text: Concurrent programming can be notoriously complex and error-prone. Programming
bugs can arise from a variety of sources, such as operation re-reordering, or
incomplete understanding of the memory model. A variety of formal and model checking
methods have been developed to address this fundamental difficulty. While technically
interesting, existing academic methods are still hard to apply to the large codebases
typical of industrial deployments, which limits their practical impact.
article_processing_charge: No
author:
- first_name: Nikita
full_name: Koval, Nikita
id: 2F4DB10C-F248-11E8-B48F-1D18A9856A87
last_name: Koval
- first_name: Mariia
full_name: Sokolova, Mariia
id: 26217AE4-77FF-11EA-8101-AD24D49E41F4
last_name: Sokolova
- first_name: Alexander
full_name: Fedorov, Alexander
last_name: Fedorov
- first_name: Dan-Adrian
full_name: Alistarh, Dan-Adrian
id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
last_name: Alistarh
orcid: 0000-0003-3650-940X
- first_name: Dmitry
full_name: Tsitelov, Dmitry
last_name: Tsitelov
citation:
ama: 'Koval N, Sokolova M, Fedorov A, Alistarh D-A, Tsitelov D. Testing concurrency
on the JVM with Lincheck. In: Proceedings of the ACM SIGPLAN Symposium on Principles
and Practice of Parallel Programming, PPOPP. Association for Computing Machinery;
2020:423-424. doi:10.1145/3332466.3374503'
apa: 'Koval, N., Sokolova, M., Fedorov, A., Alistarh, D.-A., & Tsitelov, D.
(2020). Testing concurrency on the JVM with Lincheck. In Proceedings of the
ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, PPOPP
(pp. 423–424). San Diego, CA, United States: Association for Computing Machinery.
https://doi.org/10.1145/3332466.3374503'
chicago: Koval, Nikita, Mariia Sokolova, Alexander Fedorov, Dan-Adrian Alistarh,
and Dmitry Tsitelov. “Testing Concurrency on the JVM with Lincheck.” In Proceedings
of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming,
PPOPP, 423–24. Association for Computing Machinery, 2020. https://doi.org/10.1145/3332466.3374503.
ieee: N. Koval, M. Sokolova, A. Fedorov, D.-A. Alistarh, and D. Tsitelov, “Testing
concurrency on the JVM with Lincheck,” in Proceedings of the ACM SIGPLAN Symposium
on Principles and Practice of Parallel Programming, PPOPP, San Diego, CA,
United States, 2020, pp. 423–424.
ista: 'Koval N, Sokolova M, Fedorov A, Alistarh D-A, Tsitelov D. 2020. Testing concurrency
on the JVM with Lincheck. Proceedings of the ACM SIGPLAN Symposium on Principles
and Practice of Parallel Programming, PPOPP. PPOPP: Principles and Practice of
Parallel Programming, 423–424.'
mla: Koval, Nikita, et al. “Testing Concurrency on the JVM with Lincheck.” Proceedings
of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming,
PPOPP, Association for Computing Machinery, 2020, pp. 423–24, doi:10.1145/3332466.3374503.
short: N. Koval, M. Sokolova, A. Fedorov, D.-A. Alistarh, D. Tsitelov, in:, Proceedings
of the ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming,
PPOPP, Association for Computing Machinery, 2020, pp. 423–424.
conference:
end_date: 2020-02-26
location: San Diego, CA, United States
name: 'PPOPP: Principles and Practice of Parallel Programming'
start_date: 2020-02-22
date_created: 2020-04-05T22:00:48Z
date_published: 2020-02-19T00:00:00Z
date_updated: 2024-02-28T12:53:46Z
day: '19'
department:
- _id: DaAl
doi: 10.1145/3332466.3374503
language:
- iso: eng
month: '02'
oa_version: None
page: 423-424
publication: Proceedings of the ACM SIGPLAN Symposium on Principles and Practice of
Parallel Programming, PPOPP
publication_identifier:
isbn:
- '9781450368186'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Testing concurrency on the JVM with Lincheck
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '8383'
abstract:
- lang: eng
text: We introduce extension-based proofs, a class of impossibility proofs that
includes valency arguments. They are modelled as an interaction between a prover
and a protocol. Using proofs based on combinatorial topology, it has been shown
that it is impossible to deterministically solve k-set agreement among n > k ≥
2 processes in a wait-free manner. However, it was unknown whether proofs based
on simpler techniques were possible. We explain why this impossibility result
cannot be obtained by an extension-based proof and, hence, extension-based proofs
are limited in power.
article_processing_charge: No
author:
- first_name: Dan-Adrian
full_name: Alistarh, Dan-Adrian
id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
last_name: Alistarh
orcid: 0000-0003-3650-940X
- first_name: James
full_name: Aspnes, James
last_name: Aspnes
- first_name: Faith
full_name: Ellen, Faith
last_name: Ellen
- first_name: Rati
full_name: Gelashvili, Rati
last_name: Gelashvili
- first_name: Leqi
full_name: Zhu, Leqi
last_name: Zhu
citation:
ama: 'Alistarh D-A, Aspnes J, Ellen F, Gelashvili R, Zhu L. Brief Announcement:
Why Extension-Based Proofs Fail. In: Proceedings of the 39th Symposium on Principles
of Distributed Computing. Association for Computing Machinery; 2020:54-56.
doi:10.1145/3382734.3405743'
apa: 'Alistarh, D.-A., Aspnes, J., Ellen, F., Gelashvili, R., & Zhu, L. (2020).
Brief Announcement: Why Extension-Based Proofs Fail. In Proceedings of the
39th Symposium on Principles of Distributed Computing (pp. 54–56). Virtual,
Italy: Association for Computing Machinery. https://doi.org/10.1145/3382734.3405743'
chicago: 'Alistarh, Dan-Adrian, James Aspnes, Faith Ellen, Rati Gelashvili, and
Leqi Zhu. “Brief Announcement: Why Extension-Based Proofs Fail.” In Proceedings
of the 39th Symposium on Principles of Distributed Computing, 54–56. Association
for Computing Machinery, 2020. https://doi.org/10.1145/3382734.3405743.'
ieee: 'D.-A. Alistarh, J. Aspnes, F. Ellen, R. Gelashvili, and L. Zhu, “Brief Announcement:
Why Extension-Based Proofs Fail,” in Proceedings of the 39th Symposium on Principles
of Distributed Computing, Virtual, Italy, 2020, pp. 54–56.'
ista: 'Alistarh D-A, Aspnes J, Ellen F, Gelashvili R, Zhu L. 2020. Brief Announcement:
Why Extension-Based Proofs Fail. Proceedings of the 39th Symposium on Principles
of Distributed Computing. PODC: Principles of Distributed Computing, 54–56.'
mla: 'Alistarh, Dan-Adrian, et al. “Brief Announcement: Why Extension-Based Proofs
Fail.” Proceedings of the 39th Symposium on Principles of Distributed Computing,
Association for Computing Machinery, 2020, pp. 54–56, doi:10.1145/3382734.3405743.'
short: D.-A. Alistarh, J. Aspnes, F. Ellen, R. Gelashvili, L. Zhu, in:, Proceedings
of the 39th Symposium on Principles of Distributed Computing, Association for
Computing Machinery, 2020, pp. 54–56.
conference:
end_date: 2020-08-07
location: Virtual, Italy
name: 'PODC: Principles of Distributed Computing'
start_date: 2020-08-03
date_created: 2020-09-13T22:01:18Z
date_published: 2020-07-31T00:00:00Z
date_updated: 2024-02-28T12:54:19Z
day: '31'
department:
- _id: DaAl
doi: 10.1145/3382734.3405743
language:
- iso: eng
month: '07'
oa_version: None
page: 54-56
publication: Proceedings of the 39th Symposium on Principles of Distributed Computing
publication_identifier:
isbn:
- '9781450375825'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Brief Announcement: Why Extension-Based Proofs Fail'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '8385'
abstract:
- lang: eng
text: 'We present a method for animating yarn-level cloth effects using a thin-shell
solver. We accomplish this through numerical homogenization: we first use a large
number of yarn-level simulations to build a model of the potential energy density
of the cloth, and then use this energy density function to compute forces in a
thin shell simulator. We model several yarn-based materials, including both woven
and knitted fabrics. Our model faithfully reproduces expected effects like the
stiffness of woven fabrics, and the highly deformable nature and anisotropy of
knitted fabrics. Our approach does not require any real-world experiments nor
measurements; because the method is based entirely on simulations, it can generate
entirely new material models quickly, without the need for testing apparatuses
or human intervention. We provide data-driven models of several woven and knitted
fabrics, which can be used for efficient simulation with an off-the-shelf cloth
solver.'
acknowledged_ssus:
- _id: ScienComp
acknowledgement: "We wish to thank the anonymous reviewers and the members of the
Visual Computing Group at IST Austria for their valuable feedback. We also thank
the creators of the Berkeley Garment Library [de Joya et al. 2012] for providing
garment meshes, [Krishnamurthy and Levoy 1996] and [Turk and Levoy 1994] for the
armadillo and bunny meshes, the creators of libWetCloth [Fei et al. 2018] for their
implementation of discrete elastic rod forces, and Tomáš Skřivan for\r\ninspiring
discussions and help with Mathematica code generation. This research was supported
by the Scientific Service Units (SSU) of IST Austria through resources provided
by Scientific Computing. This project has received funding from the European Research
Council (ERC) under the European Union’s Horizon 2020 research and innovation programme
under grant agreement No. 638176. Rahul Narain is supported by a Pankaj Gupta Young
Faculty Fellowship and a gift from Adobe Inc."
article_number: '48'
article_processing_charge: No
article_type: original
author:
- first_name: Georg
full_name: Sperl, Georg
id: 4DD40360-F248-11E8-B48F-1D18A9856A87
last_name: Sperl
- first_name: Rahul
full_name: Narain, Rahul
last_name: Narain
- first_name: Christopher J
full_name: Wojtan, Christopher J
id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
last_name: Wojtan
orcid: 0000-0001-6646-5546
citation:
ama: Sperl G, Narain R, Wojtan C. Homogenized yarn-level cloth. ACM Transactions
on Graphics. 2020;39(4). doi:10.1145/3386569.3392412
apa: Sperl, G., Narain, R., & Wojtan, C. (2020). Homogenized yarn-level cloth.
ACM Transactions on Graphics. Association for Computing Machinery. https://doi.org/10.1145/3386569.3392412
chicago: Sperl, Georg, Rahul Narain, and Chris Wojtan. “Homogenized Yarn-Level Cloth.”
ACM Transactions on Graphics. Association for Computing Machinery, 2020.
https://doi.org/10.1145/3386569.3392412.
ieee: G. Sperl, R. Narain, and C. Wojtan, “Homogenized yarn-level cloth,” ACM
Transactions on Graphics, vol. 39, no. 4. Association for Computing Machinery,
2020.
ista: Sperl G, Narain R, Wojtan C. 2020. Homogenized yarn-level cloth. ACM Transactions
on Graphics. 39(4), 48.
mla: Sperl, Georg, et al. “Homogenized Yarn-Level Cloth.” ACM Transactions on
Graphics, vol. 39, no. 4, 48, Association for Computing Machinery, 2020, doi:10.1145/3386569.3392412.
short: G. Sperl, R. Narain, C. Wojtan, ACM Transactions on Graphics 39 (2020).
date_created: 2020-09-13T22:01:18Z
date_published: 2020-07-08T00:00:00Z
date_updated: 2024-02-28T12:57:47Z
day: '08'
ddc:
- '000'
department:
- _id: ChWo
doi: 10.1145/3386569.3392412
ec_funded: 1
external_id:
isi:
- '000583700300021'
file:
- access_level: open_access
checksum: cf4c1d361c3196c4bd424520a5588205
content_type: application/pdf
creator: dernst
date_created: 2020-11-23T09:01:22Z
date_updated: 2020-11-23T09:01:22Z
file_id: '8794'
file_name: 2020_hylc_submitted.pdf
file_size: 38922662
relation: main_file
success: 1
file_date_updated: 2020-11-23T09:01:22Z
has_accepted_license: '1'
intvolume: ' 39'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1145/3386569.3392412
month: '07'
oa: 1
oa_version: Submitted Version
project:
- _id: 2533E772-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '638176'
name: Efficient Simulation of Natural Phenomena at Extremely Large Scales
publication: ACM Transactions on Graphics
publication_identifier:
eissn:
- '15577368'
issn:
- '07300301'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
related_material:
record:
- id: '12358'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Homogenized yarn-level cloth
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 39
year: '2020'
...
---
_id: '7956'
abstract:
- lang: eng
text: When short-range attractions are combined with long-range repulsions in colloidal
particle systems, complex microphases can emerge. Here, we study a system of isotropic
particles, which can form lamellar structures or a disordered fluid phase when
temperature is varied. We show that, at equilibrium, the lamellar structure crystallizes,
while out of equilibrium, the system forms a variety of structures at different
shear rates and temperatures above melting. The shear-induced ordering is analyzed
by means of principal component analysis and artificial neural networks, which
are applied to data of reduced dimensionality. Our results reveal the possibility
of inducing ordering by shear, potentially providing a feasible route to the fabrication
of ordered lamellar structures from isotropic particles.
article_number: '204905'
article_processing_charge: No
article_type: original
author:
- first_name: J.
full_name: Pȩkalski, J.
last_name: Pȩkalski
- first_name: Wojciech
full_name: Rzadkowski, Wojciech
id: 48C55298-F248-11E8-B48F-1D18A9856A87
last_name: Rzadkowski
orcid: 0000-0002-1106-4419
- first_name: A. Z.
full_name: Panagiotopoulos, A. Z.
last_name: Panagiotopoulos
citation:
ama: 'Pȩkalski J, Rzadkowski W, Panagiotopoulos AZ. Shear-induced ordering in systems
with competing interactions: A machine learning study. The Journal of chemical
physics. 2020;152(20). doi:10.1063/5.0005194'
apa: 'Pȩkalski, J., Rzadkowski, W., & Panagiotopoulos, A. Z. (2020). Shear-induced
ordering in systems with competing interactions: A machine learning study. The
Journal of Chemical Physics. AIP Publishing. https://doi.org/10.1063/5.0005194'
chicago: 'Pȩkalski, J., Wojciech Rzadkowski, and A. Z. Panagiotopoulos. “Shear-Induced
Ordering in Systems with Competing Interactions: A Machine Learning Study.” The
Journal of Chemical Physics. AIP Publishing, 2020. https://doi.org/10.1063/5.0005194.'
ieee: 'J. Pȩkalski, W. Rzadkowski, and A. Z. Panagiotopoulos, “Shear-induced ordering
in systems with competing interactions: A machine learning study,” The Journal
of chemical physics, vol. 152, no. 20. AIP Publishing, 2020.'
ista: 'Pȩkalski J, Rzadkowski W, Panagiotopoulos AZ. 2020. Shear-induced ordering
in systems with competing interactions: A machine learning study. The Journal
of chemical physics. 152(20), 204905.'
mla: 'Pȩkalski, J., et al. “Shear-Induced Ordering in Systems with Competing Interactions:
A Machine Learning Study.” The Journal of Chemical Physics, vol. 152, no.
20, 204905, AIP Publishing, 2020, doi:10.1063/5.0005194.'
short: J. Pȩkalski, W. Rzadkowski, A.Z. Panagiotopoulos, The Journal of Chemical
Physics 152 (2020).
date_created: 2020-06-14T22:00:49Z
date_published: 2020-05-29T00:00:00Z
date_updated: 2024-02-28T13:00:28Z
day: '29'
department:
- _id: MiLe
doi: 10.1063/5.0005194
ec_funded: 1
external_id:
arxiv:
- '2002.07294'
isi:
- '000537900300001'
intvolume: ' 152'
isi: 1
issue: '20'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1063/5.0005194
month: '05'
oa: 1
oa_version: Published Version
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '665385'
name: International IST Doctoral Program
publication: The Journal of chemical physics
publication_identifier:
eissn:
- '10897690'
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
related_material:
record:
- id: '10759'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: 'Shear-induced ordering in systems with competing interactions: A machine learning
study'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 152
year: '2020'
...
---
_id: '8382'
abstract:
- lang: eng
text: We present the first deterministic wait-free long-lived snapshot algorithm,
using only read and write operations, that guarantees polylogarithmic amortized
step complexity in all executions. This is the first non-blocking snapshot algorithm,
using reads and writes only, that has sub-linear amortized step complexity in
executions of arbitrary length. The key to our construction is a novel implementation
of a 2-component max array object which may be of independent interest.
article_processing_charge: No
author:
- first_name: Mirza Ahad
full_name: Baig, Mirza Ahad
id: 3EDE6DE4-AA5A-11E9-986D-341CE6697425
last_name: Baig
- first_name: Danny
full_name: Hendler, Danny
last_name: Hendler
- first_name: Alessia
full_name: Milani, Alessia
last_name: Milani
- first_name: Corentin
full_name: Travers, Corentin
last_name: Travers
citation:
ama: 'Baig MA, Hendler D, Milani A, Travers C. Long-lived snapshots with polylogarithmic
amortized step complexity. In: Proceedings of the 39th Symposium on Principles
of Distributed Computing. Association for Computing Machinery; 2020:31-40.
doi:10.1145/3382734.3406005'
apa: 'Baig, M. A., Hendler, D., Milani, A., & Travers, C. (2020). Long-lived
snapshots with polylogarithmic amortized step complexity. In Proceedings of
the 39th Symposium on Principles of Distributed Computing (pp. 31–40). Virtual,
Italy: Association for Computing Machinery. https://doi.org/10.1145/3382734.3406005'
chicago: Baig, Mirza Ahad, Danny Hendler, Alessia Milani, and Corentin Travers.
“Long-Lived Snapshots with Polylogarithmic Amortized Step Complexity.” In Proceedings
of the 39th Symposium on Principles of Distributed Computing, 31–40. Association
for Computing Machinery, 2020. https://doi.org/10.1145/3382734.3406005.
ieee: M. A. Baig, D. Hendler, A. Milani, and C. Travers, “Long-lived snapshots with
polylogarithmic amortized step complexity,” in Proceedings of the 39th Symposium
on Principles of Distributed Computing, Virtual, Italy, 2020, pp. 31–40.
ista: 'Baig MA, Hendler D, Milani A, Travers C. 2020. Long-lived snapshots with
polylogarithmic amortized step complexity. Proceedings of the 39th Symposium on
Principles of Distributed Computing. PODC: Principles of Distributed Computing,
31–40.'
mla: Baig, Mirza Ahad, et al. “Long-Lived Snapshots with Polylogarithmic Amortized
Step Complexity.” Proceedings of the 39th Symposium on Principles of Distributed
Computing, Association for Computing Machinery, 2020, pp. 31–40, doi:10.1145/3382734.3406005.
short: M.A. Baig, D. Hendler, A. Milani, C. Travers, in:, Proceedings of the 39th
Symposium on Principles of Distributed Computing, Association for Computing Machinery,
2020, pp. 31–40.
conference:
end_date: 2020-08-07
location: Virtual, Italy
name: 'PODC: Principles of Distributed Computing'
start_date: 2020-08-03
date_created: 2020-09-13T22:01:17Z
date_published: 2020-07-31T00:00:00Z
date_updated: 2024-02-28T12:54:30Z
day: '31'
doi: 10.1145/3382734.3406005
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://hal.archives-ouvertes.fr/hal-02860087/document
month: '07'
oa: 1
oa_version: Preprint
page: 31-40
publication: Proceedings of the 39th Symposium on Principles of Distributed Computing
publication_identifier:
isbn:
- '9781450375825'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: Long-lived snapshots with polylogarithmic amortized step complexity
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7428'
abstract:
- lang: eng
text: In the superconducting regime of FeTe(1−x)Sex, there exist two types of vortices
which are distinguished by the presence or absence of zero-energy states in their
core. To understand their origin, we examine the interplay of Zeeman coupling
and superconducting pairings in three-dimensional metals with band inversion.
Weak Zeeman fields are found to suppress intraorbital spin-singlet pairing, known
to localize the states at the ends of the vortices on the surface. On the other
hand, an orbital-triplet pairing is shown to be stable against Zeeman interactions,
but leads to delocalized zero-energy Majorana modes which extend through the vortex.
In contrast, the finite-energy vortex modes remain localized at the vortex ends
even when the pairing is of orbital-triplet form. Phenomenologically, this manifests
as an observed disappearance of zero-bias peaks within the cores of topological
vortices upon an increase of the applied magnetic field. The presence of magnetic
impurities in FeTe(1−x)Sex, which are attracted to the vortices, would lead to
such Zeeman-induced delocalization of Majorana modes in a fraction of vortices
that capture a large enough number of magnetic impurities. Our results provide
an explanation for the dichotomy between topological and nontopological vortices
recently observed in FeTe(1−x)Sex.
article_number: '020504'
article_processing_charge: No
article_type: original
author:
- first_name: Areg
full_name: Ghazaryan, Areg
id: 4AF46FD6-F248-11E8-B48F-1D18A9856A87
last_name: Ghazaryan
orcid: 0000-0001-9666-3543
- first_name: P. L.S.
full_name: Lopes, P. L.S.
last_name: Lopes
- first_name: Pavan
full_name: Hosur, Pavan
last_name: Hosur
- first_name: Matthew J.
full_name: Gilbert, Matthew J.
last_name: Gilbert
- first_name: Pouyan
full_name: Ghaemi, Pouyan
last_name: Ghaemi
citation:
ama: Ghazaryan A, Lopes PLS, Hosur P, Gilbert MJ, Ghaemi P. Effect of Zeeman coupling
on the Majorana vortex modes in iron-based topological superconductors. Physical
Review B. 2020;101(2). doi:10.1103/PhysRevB.101.020504
apa: Ghazaryan, A., Lopes, P. L. S., Hosur, P., Gilbert, M. J., & Ghaemi, P.
(2020). Effect of Zeeman coupling on the Majorana vortex modes in iron-based topological
superconductors. Physical Review B. American Physical Society. https://doi.org/10.1103/PhysRevB.101.020504
chicago: Ghazaryan, Areg, P. L.S. Lopes, Pavan Hosur, Matthew J. Gilbert, and Pouyan
Ghaemi. “Effect of Zeeman Coupling on the Majorana Vortex Modes in Iron-Based
Topological Superconductors.” Physical Review B. American Physical Society,
2020. https://doi.org/10.1103/PhysRevB.101.020504.
ieee: A. Ghazaryan, P. L. S. Lopes, P. Hosur, M. J. Gilbert, and P. Ghaemi, “Effect
of Zeeman coupling on the Majorana vortex modes in iron-based topological superconductors,”
Physical Review B, vol. 101, no. 2. American Physical Society, 2020.
ista: Ghazaryan A, Lopes PLS, Hosur P, Gilbert MJ, Ghaemi P. 2020. Effect of Zeeman
coupling on the Majorana vortex modes in iron-based topological superconductors.
Physical Review B. 101(2), 020504.
mla: Ghazaryan, Areg, et al. “Effect of Zeeman Coupling on the Majorana Vortex Modes
in Iron-Based Topological Superconductors.” Physical Review B, vol. 101,
no. 2, 020504, American Physical Society, 2020, doi:10.1103/PhysRevB.101.020504.
short: A. Ghazaryan, P.L.S. Lopes, P. Hosur, M.J. Gilbert, P. Ghaemi, Physical Review
B 101 (2020).
date_created: 2020-02-02T23:01:01Z
date_published: 2020-01-13T00:00:00Z
date_updated: 2024-02-28T13:11:13Z
day: '13'
department:
- _id: MiLe
doi: 10.1103/PhysRevB.101.020504
external_id:
arxiv:
- '1907.02077'
isi:
- '000506843500001'
intvolume: ' 101'
isi: 1
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1907.02077
month: '01'
oa: 1
oa_version: Preprint
publication: Physical Review B
publication_identifier:
eissn:
- '24699969'
issn:
- '24699950'
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Effect of Zeeman coupling on the Majorana vortex modes in iron-based topological
superconductors
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 101
year: '2020'
...
---
_id: '8319'
abstract:
- lang: eng
text: We demonstrate that releasing atoms into free space from an optical lattice
does not deteriorate cavity-generated spin squeezing for metrological purposes.
In this work, an ensemble of 500000 spin-squeezed atoms in a high-finesse optical
cavity with near-uniform atom-cavity coupling is prepared, released into free
space, recaptured in the cavity, and probed. Up to ∼10 dB of metrologically relevant
squeezing is retrieved for 700μs free-fall times, and decaying levels of squeezing
are realized for up to 3 ms free-fall times. The degradation of squeezing results
from loss of atom-cavity coupling homogeneity between the initial squeezed state
generation and final collective state readout. A theoretical model is developed
to quantify this degradation and this model is experimentally validated.
acknowledgement: We thank N. Engelsen for comments on the manuscript. This work was
supported by the Office of Naval Research, Vannevar Bush Faculty Fellowship, Department
of Energy, and Defense Threat Reduction Agency. R.K. was partly supported by the
AQT/INQNET program at Caltech.
article_number: '012224'
article_processing_charge: No
article_type: original
author:
- first_name: Yunfan
full_name: Wu, Yunfan
last_name: Wu
- first_name: Rajiv
full_name: Krishnakumar, Rajiv
last_name: Krishnakumar
- first_name: Julián
full_name: Martínez-Rincón, Julián
last_name: Martínez-Rincón
- first_name: Benjamin K.
full_name: Malia, Benjamin K.
last_name: Malia
- first_name: Onur
full_name: Hosten, Onur
id: 4C02D85E-F248-11E8-B48F-1D18A9856A87
last_name: Hosten
orcid: 0000-0002-2031-204X
- first_name: Mark A.
full_name: Kasevich, Mark A.
last_name: Kasevich
citation:
ama: Wu Y, Krishnakumar R, Martínez-Rincón J, Malia BK, Hosten O, Kasevich MA. Retrieval
of cavity-generated atomic spin squeezing after free-space release. Physical
Review A. 2020;102(1). doi:10.1103/PhysRevA.102.012224
apa: Wu, Y., Krishnakumar, R., Martínez-Rincón, J., Malia, B. K., Hosten, O., &
Kasevich, M. A. (2020). Retrieval of cavity-generated atomic spin squeezing after
free-space release. Physical Review A. American Physical Society. https://doi.org/10.1103/PhysRevA.102.012224
chicago: Wu, Yunfan, Rajiv Krishnakumar, Julián Martínez-Rincón, Benjamin K. Malia,
Onur Hosten, and Mark A. Kasevich. “Retrieval of Cavity-Generated Atomic Spin
Squeezing after Free-Space Release.” Physical Review A. American Physical
Society, 2020. https://doi.org/10.1103/PhysRevA.102.012224.
ieee: Y. Wu, R. Krishnakumar, J. Martínez-Rincón, B. K. Malia, O. Hosten, and M.
A. Kasevich, “Retrieval of cavity-generated atomic spin squeezing after free-space
release,” Physical Review A, vol. 102, no. 1. American Physical Society,
2020.
ista: Wu Y, Krishnakumar R, Martínez-Rincón J, Malia BK, Hosten O, Kasevich MA.
2020. Retrieval of cavity-generated atomic spin squeezing after free-space release.
Physical Review A. 102(1), 012224.
mla: Wu, Yunfan, et al. “Retrieval of Cavity-Generated Atomic Spin Squeezing after
Free-Space Release.” Physical Review A, vol. 102, no. 1, 012224, American
Physical Society, 2020, doi:10.1103/PhysRevA.102.012224.
short: Y. Wu, R. Krishnakumar, J. Martínez-Rincón, B.K. Malia, O. Hosten, M.A. Kasevich,
Physical Review A 102 (2020).
date_created: 2020-08-30T22:01:10Z
date_published: 2020-07-30T00:00:00Z
date_updated: 2024-02-28T13:11:28Z
day: '30'
department:
- _id: OnHo
doi: 10.1103/PhysRevA.102.012224
external_id:
arxiv:
- '1912.08334'
isi:
- '000555104200011'
intvolume: ' 102'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1912.08334
month: '07'
oa: 1
oa_version: Preprint
publication: Physical Review A
publication_identifier:
eissn:
- '24699934'
issn:
- '24699926'
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Retrieval of cavity-generated atomic spin squeezing after free-space release
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 102
year: '2020'
...
---
_id: '8766'
abstract:
- lang: eng
text: "The “procedural” approach to animating ocean waves is the dominant algorithm
for animating larger bodies of water in\r\ninteractive applications as well as
in off-line productions — it provides high visual quality with a low computational
demand. In this paper, we widen the applicability of procedural water wave animation
with an extension that guarantees the satisfaction of boundary conditions imposed
by terrain while still approximating physical wave behavior. In combination with
a particle system that models wave breaking, foam, and spray, this allows us to
naturally model waves interacting with beaches and rocks. Our system is able to
animate waves at large scales at interactive frame rates on a commodity PC."
article_processing_charge: No
article_type: original
author:
- first_name: Stefan
full_name: Jeschke, Stefan
id: 44D6411A-F248-11E8-B48F-1D18A9856A87
last_name: Jeschke
- first_name: Christian
full_name: Hafner, Christian
id: 400429CC-F248-11E8-B48F-1D18A9856A87
last_name: Hafner
- first_name: Nuttapong
full_name: Chentanez, Nuttapong
last_name: Chentanez
- first_name: Miles
full_name: Macklin, Miles
last_name: Macklin
- first_name: Matthias
full_name: Müller-Fischer, Matthias
last_name: Müller-Fischer
- first_name: Christopher J
full_name: Wojtan, Christopher J
id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
last_name: Wojtan
orcid: 0000-0001-6646-5546
citation:
ama: Jeschke S, Hafner C, Chentanez N, Macklin M, Müller-Fischer M, Wojtan C. Making
procedural water waves boundary-aware. Computer Graphics forum. 2020;39(8):47-54.
doi:10.1111/cgf.14100
apa: 'Jeschke, S., Hafner, C., Chentanez, N., Macklin, M., Müller-Fischer, M., &
Wojtan, C. (2020). Making procedural water waves boundary-aware. Computer Graphics
Forum. Online Symposium: Wiley. https://doi.org/10.1111/cgf.14100'
chicago: Jeschke, Stefan, Christian Hafner, Nuttapong Chentanez, Miles Macklin,
Matthias Müller-Fischer, and Chris Wojtan. “Making Procedural Water Waves Boundary-Aware.”
Computer Graphics Forum. Wiley, 2020. https://doi.org/10.1111/cgf.14100.
ieee: S. Jeschke, C. Hafner, N. Chentanez, M. Macklin, M. Müller-Fischer, and C.
Wojtan, “Making procedural water waves boundary-aware,” Computer Graphics forum,
vol. 39, no. 8. Wiley, pp. 47–54, 2020.
ista: Jeschke S, Hafner C, Chentanez N, Macklin M, Müller-Fischer M, Wojtan C. 2020.
Making procedural water waves boundary-aware. Computer Graphics forum. 39(8),
47–54.
mla: Jeschke, Stefan, et al. “Making Procedural Water Waves Boundary-Aware.” Computer
Graphics Forum, vol. 39, no. 8, Wiley, 2020, pp. 47–54, doi:10.1111/cgf.14100.
short: S. Jeschke, C. Hafner, N. Chentanez, M. Macklin, M. Müller-Fischer, C. Wojtan,
Computer Graphics Forum 39 (2020) 47–54.
conference:
end_date: 2020-10-09
location: Online Symposium
name: 'SCA: Symposium on Computer Animation'
start_date: 2020-10-06
date_created: 2020-11-17T10:47:48Z
date_published: 2020-12-01T00:00:00Z
date_updated: 2024-02-28T13:58:11Z
day: '01'
department:
- _id: ChWo
- _id: BeBi
doi: 10.1111/cgf.14100
ec_funded: 1
external_id:
isi:
- '000591780400005'
intvolume: ' 39'
isi: 1
issue: '8'
language:
- iso: eng
month: '12'
oa_version: None
page: 47-54
project:
- _id: 2533E772-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '638176'
name: Efficient Simulation of Natural Phenomena at Extremely Large Scales
- _id: 24F9549A-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '715767'
name: 'MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and
Modeling'
publication: Computer Graphics forum
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Making procedural water waves boundary-aware
type: journal_article
user_id: 2EBD1598-F248-11E8-B48F-1D18A9856A87
volume: 39
year: '2020'
...
---
_id: '15055'
abstract:
- lang: eng
text: Markov decision processes (MDPs) are the defacto framework for sequential
decision making in the presence of stochastic uncertainty. A classical optimization
criterion for MDPs is to maximize the expected discounted-sum payoff, which ignores
low probability catastrophic events with highly negative impact on the system.
On the other hand, risk-averse policies require the probability of undesirable
events to be below a given threshold, but they do not account for optimization
of the expected payoff. We consider MDPs with discounted-sum payoff with failure
states which represent catastrophic outcomes. The objective of risk-constrained
planning is to maximize the expected discounted-sum payoff among risk-averse policies
that ensure the probability to encounter a failure state is below a desired threshold.
Our main contribution is an efficient risk-constrained planning algorithm that
combines UCT-like search with a predictor learned through interaction with the
MDP (in the style of AlphaZero) and with a risk-constrained action selection via
linear programming. We demonstrate the effectiveness of our approach with experiments
on classical MDPs from the literature, including benchmarks with an order of 106
states.
acknowledgement: Krishnendu Chatterjee is supported by the Austrian Science Fund (FWF)
NFN Grant No. S11407-N23 (RiSE/SHiNE), and COST Action GAMENET. Tomas Brazdil is
supported by the Grant Agency of Masaryk University grant no. MUNI/G/0739/2017 and
by the Czech Science Foundation grant No. 18-11193S. Petr Novotny and Jirı Vahala
are supported by the Czech Science Foundation grant No. GJ19-15134Y.
article_processing_charge: No
article_type: original
author:
- first_name: Tomáš
full_name: Brázdil, Tomáš
last_name: Brázdil
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Petr
full_name: Novotný, Petr
last_name: Novotný
- first_name: Jiří
full_name: Vahala, Jiří
last_name: Vahala
citation:
ama: Brázdil T, Chatterjee K, Novotný P, Vahala J. Reinforcement learning of risk-constrained
policies in Markov decision processes. Proceedings of the 34th AAAI Conference
on Artificial Intelligence. 2020;34(06):9794-9801. doi:10.1609/aaai.v34i06.6531
apa: 'Brázdil, T., Chatterjee, K., Novotný, P., & Vahala, J. (2020). Reinforcement
learning of risk-constrained policies in Markov decision processes. Proceedings
of the 34th AAAI Conference on Artificial Intelligence. New York, NY, United
States: Association for the Advancement of Artificial Intelligence. https://doi.org/10.1609/aaai.v34i06.6531'
chicago: Brázdil, Tomáš, Krishnendu Chatterjee, Petr Novotný, and Jiří Vahala. “Reinforcement
Learning of Risk-Constrained Policies in Markov Decision Processes.” Proceedings
of the 34th AAAI Conference on Artificial Intelligence. Association for the
Advancement of Artificial Intelligence, 2020. https://doi.org/10.1609/aaai.v34i06.6531.
ieee: T. Brázdil, K. Chatterjee, P. Novotný, and J. Vahala, “Reinforcement learning
of risk-constrained policies in Markov decision processes,” Proceedings of
the 34th AAAI Conference on Artificial Intelligence, vol. 34, no. 06. Association
for the Advancement of Artificial Intelligence, pp. 9794–9801, 2020.
ista: Brázdil T, Chatterjee K, Novotný P, Vahala J. 2020. Reinforcement learning
of risk-constrained policies in Markov decision processes. Proceedings of the
34th AAAI Conference on Artificial Intelligence. 34(06), 9794–9801.
mla: Brázdil, Tomáš, et al. “Reinforcement Learning of Risk-Constrained Policies
in Markov Decision Processes.” Proceedings of the 34th AAAI Conference on Artificial
Intelligence, vol. 34, no. 06, Association for the Advancement of Artificial
Intelligence, 2020, pp. 9794–801, doi:10.1609/aaai.v34i06.6531.
short: T. Brázdil, K. Chatterjee, P. Novotný, J. Vahala, Proceedings of the 34th
AAAI Conference on Artificial Intelligence 34 (2020) 9794–9801.
conference:
end_date: 2020-02-12
location: New York, NY, United States
name: 'AAAI: Conference on Artificial Intelligence'
start_date: 2020-02-07
date_created: 2024-03-04T08:07:22Z
date_published: 2020-04-03T00:00:00Z
date_updated: 2024-03-04T08:30:16Z
day: '03'
department:
- _id: KrCh
doi: 10.1609/aaai.v34i06.6531
external_id:
arxiv:
- '2002.12086'
intvolume: ' 34'
issue: '06'
keyword:
- General Medicine
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2002.12086
month: '04'
oa: 1
oa_version: Preprint
page: 9794-9801
project:
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11407
name: Game Theory
publication: Proceedings of the 34th AAAI Conference on Artificial Intelligence
publication_identifier:
issn:
- 2374-3468
publication_status: published
publisher: Association for the Advancement of Artificial Intelligence
quality_controlled: '1'
status: public
title: Reinforcement learning of risk-constrained policies in Markov decision processes
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 34
year: '2020'
...