--- _id: '14441' abstract: - lang: eng text: We study the Fröhlich polaron model in R3, and establish the subleading term in the strong coupling asymptotics of its ground state energy, corresponding to the quantum corrections to the classical energy determined by the Pekar approximation. acknowledgement: Funding from the European Union’s Horizon 2020 research and innovation programme under the ERC grant agreement No 694227 is acknowledged. Open access funding provided by Institute of Science and Technology (IST Austria). article_processing_charge: Yes (via OA deal) article_type: original author: - first_name: Morris full_name: Brooks, Morris id: B7ECF9FC-AA38-11E9-AC9A-0930E6697425 last_name: Brooks orcid: 0000-0002-6249-0928 - first_name: Robert full_name: Seiringer, Robert id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 citation: ama: 'Brooks M, Seiringer R. The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy. Communications in Mathematical Physics. 2023;404:287-337. doi:10.1007/s00220-023-04841-3' apa: 'Brooks, M., & Seiringer, R. (2023). The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy. Communications in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s00220-023-04841-3' chicago: 'Brooks, Morris, and Robert Seiringer. “The Fröhlich Polaron at Strong Coupling: Part I - The Quantum Correction to the Classical Energy.” Communications in Mathematical Physics. Springer Nature, 2023. https://doi.org/10.1007/s00220-023-04841-3.' ieee: 'M. Brooks and R. Seiringer, “The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy,” Communications in Mathematical Physics, vol. 404. Springer Nature, pp. 287–337, 2023.' ista: 'Brooks M, Seiringer R. 2023. The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy. Communications in Mathematical Physics. 404, 287–337.' mla: 'Brooks, Morris, and Robert Seiringer. “The Fröhlich Polaron at Strong Coupling: Part I - The Quantum Correction to the Classical Energy.” Communications in Mathematical Physics, vol. 404, Springer Nature, 2023, pp. 287–337, doi:10.1007/s00220-023-04841-3.' short: M. Brooks, R. Seiringer, Communications in Mathematical Physics 404 (2023) 287–337. date_created: 2023-10-22T22:01:13Z date_published: 2023-11-01T00:00:00Z date_updated: 2023-10-31T12:22:51Z day: '01' ddc: - '510' department: - _id: RoSe doi: 10.1007/s00220-023-04841-3 ec_funded: 1 external_id: arxiv: - '2207.03156' file: - access_level: open_access checksum: 1ae49b39247cb6b40ff75997381581b8 content_type: application/pdf creator: dernst date_created: 2023-10-31T12:21:39Z date_updated: 2023-10-31T12:21:39Z file_id: '14477' file_name: 2023_CommMathPhysics_Brooks.pdf file_size: 832375 relation: main_file success: 1 file_date_updated: 2023-10-31T12:21:39Z has_accepted_license: '1' intvolume: ' 404' language: - iso: eng license: https://creativecommons.org/licenses/by/4.0/ month: '11' oa: 1 oa_version: Published Version page: 287-337 project: - _id: 25C6DC12-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '694227' name: Analysis of quantum many-body systems publication: Communications in Mathematical Physics publication_identifier: eissn: - 1432-0916 issn: - 0010-3616 publication_status: published publisher: Springer Nature quality_controlled: '1' scopus_import: '1' status: public title: 'The Fröhlich Polaron at strong coupling: Part I - The quantum correction to the classical energy' tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 404 year: '2023' ... --- _id: '14448' abstract: - lang: eng text: We consider the problem of solving LP relaxations of MAP-MRF inference problems, and in particular the method proposed recently in [16], [35]. As a key computational subroutine, it uses a variant of the Frank-Wolfe (FW) method to minimize a smooth convex function over a combinatorial polytope. We propose an efficient implementation of this subroutine based on in-face Frank-Wolfe directions, introduced in [4] in a different context. More generally, we define an abstract data structure for a combinatorial subproblem that enables in-face FW directions, and describe its specialization for tree-structured MAP-MRF inference subproblems. Experimental results indicate that the resulting method is the current state-of-art LP solver for some classes of problems. Our code is available at pub.ist.ac.at/~vnk/papers/IN-FACE-FW.html. article_processing_charge: No author: - first_name: Vladimir full_name: Kolmogorov, Vladimir id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87 last_name: Kolmogorov citation: ama: 'Kolmogorov V. Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions. In: Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition. Vol 2023. IEEE; 2023:11980-11989. doi:10.1109/CVPR52729.2023.01153' apa: 'Kolmogorov, V. (2023). Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions. In Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition (Vol. 2023, pp. 11980–11989). Vancouver, Canada: IEEE. https://doi.org/10.1109/CVPR52729.2023.01153' chicago: 'Kolmogorov, Vladimir. “Solving Relaxations of MAP-MRF Problems: Combinatorial in-Face Frank-Wolfe Directions.” In Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2023:11980–89. IEEE, 2023. https://doi.org/10.1109/CVPR52729.2023.01153.' ieee: 'V. Kolmogorov, “Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions,” in Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Vancouver, Canada, 2023, vol. 2023, pp. 11980–11989.' ista: 'Kolmogorov V. 2023. Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions. Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition. CVPR: Conference on Computer Vision and Pattern Recognition vol. 2023, 11980–11989.' mla: 'Kolmogorov, Vladimir. “Solving Relaxations of MAP-MRF Problems: Combinatorial in-Face Frank-Wolfe Directions.” Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, vol. 2023, IEEE, 2023, pp. 11980–89, doi:10.1109/CVPR52729.2023.01153.' short: V. Kolmogorov, in:, Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, IEEE, 2023, pp. 11980–11989. conference: end_date: 2023-06-24 location: Vancouver, Canada name: 'CVPR: Conference on Computer Vision and Pattern Recognition' start_date: 2023-06-17 date_created: 2023-10-22T22:01:16Z date_published: 2023-08-22T00:00:00Z date_updated: 2023-10-31T12:01:24Z day: '22' department: - _id: VlKo doi: 10.1109/CVPR52729.2023.01153 external_id: arxiv: - '2010.09567' intvolume: ' 2023' language: - iso: eng main_file_link: - open_access: '1' url: ' https://doi.org/10.48550/arXiv.2010.09567' month: '08' oa: 1 oa_version: Preprint page: 11980-11989 publication: Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition publication_identifier: isbn: - '9798350301298' issn: - 1063-6919 publication_status: published publisher: IEEE quality_controlled: '1' scopus_import: '1' status: public title: 'Solving relaxations of MAP-MRF problems: Combinatorial in-face Frank-Wolfe directions' type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 2023 year: '2023' ... --- _id: '12672' abstract: - lang: eng text: Cytosine methylation within CG dinucleotides (mCG) can be epigenetically inherited over many generations. Such inheritance is thought to be mediated by a semiconservative mechanism that produces binary present/absent methylation patterns. However, we show here that in Arabidopsis thaliana h1ddm1 mutants, intermediate heterochromatic mCG is stably inherited across many generations and is quantitatively associated with transposon expression. We develop a mathematical model that estimates the rates of semiconservative maintenance failure and de novo methylation at each transposon, demonstrating that mCG can be stably inherited at any level via a dynamic balance of these activities. We find that DRM2 – the core methyltransferase of the RNA-directed DNA methylation pathway – catalyzes most of the heterochromatic de novo mCG, with de novo rates orders of magnitude higher than previously thought, whereas chromomethylases make smaller contributions. Our results demonstrate that stable epigenetic inheritance of mCG in plant heterochromatin is enabled by extensive de novo methylation. acknowledgement: The authors would like to thank Jasper Rine for advice and mentorship to D.B.L., Lesley Philips, Timothy Wells, Sophie Able, and Christina Wistrom for support with plant growth, and Bhagyshree Jamge and Frédéric Berger for help with analysis of ddm1 × WT RNA-sequencing data. This work was supported by BBSRC Institute Strategic Program GEN (BB/P013511/1) to X.F., M.H., and D.Z., a European Research Council grant MaintainMeth (725746) to D.Z., and a postdoctoral fellowship from the Helen Hay Whitney Foundation to D.B.L. article_number: '112132' article_processing_charge: Yes article_type: original author: - first_name: David B. full_name: Lyons, David B. last_name: Lyons - first_name: Amy full_name: Briffa, Amy last_name: Briffa - first_name: Shengbo full_name: He, Shengbo last_name: He - first_name: Jaemyung full_name: Choi, Jaemyung last_name: Choi - first_name: Elizabeth full_name: Hollwey, Elizabeth id: b8c4f54b-e484-11eb-8fdc-a54df64ef6dd last_name: Hollwey - first_name: Jack full_name: Colicchio, Jack last_name: Colicchio - first_name: Ian full_name: Anderson, Ian last_name: Anderson - first_name: Xiaoqi full_name: Feng, Xiaoqi id: e0164712-22ee-11ed-b12a-d80fcdf35958 last_name: Feng orcid: 0000-0002-4008-1234 - first_name: Martin full_name: Howard, Martin last_name: Howard - first_name: Daniel full_name: Zilberman, Daniel id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1 last_name: Zilberman orcid: 0000-0002-0123-8649 citation: ama: Lyons DB, Briffa A, He S, et al. Extensive de novo activity stabilizes epigenetic inheritance of CG methylation in Arabidopsis transposons. Cell Reports. 2023;42(3). doi:10.1016/j.celrep.2023.112132 apa: Lyons, D. B., Briffa, A., He, S., Choi, J., Hollwey, E., Colicchio, J., … Zilberman, D. (2023). Extensive de novo activity stabilizes epigenetic inheritance of CG methylation in Arabidopsis transposons. Cell Reports. Elsevier. https://doi.org/10.1016/j.celrep.2023.112132 chicago: Lyons, David B., Amy Briffa, Shengbo He, Jaemyung Choi, Elizabeth Hollwey, Jack Colicchio, Ian Anderson, Xiaoqi Feng, Martin Howard, and Daniel Zilberman. “Extensive de Novo Activity Stabilizes Epigenetic Inheritance of CG Methylation in Arabidopsis Transposons.” Cell Reports. Elsevier, 2023. https://doi.org/10.1016/j.celrep.2023.112132. ieee: D. B. Lyons et al., “Extensive de novo activity stabilizes epigenetic inheritance of CG methylation in Arabidopsis transposons,” Cell Reports, vol. 42, no. 3. Elsevier, 2023. ista: Lyons DB, Briffa A, He S, Choi J, Hollwey E, Colicchio J, Anderson I, Feng X, Howard M, Zilberman D. 2023. Extensive de novo activity stabilizes epigenetic inheritance of CG methylation in Arabidopsis transposons. Cell Reports. 42(3), 112132. mla: Lyons, David B., et al. “Extensive de Novo Activity Stabilizes Epigenetic Inheritance of CG Methylation in Arabidopsis Transposons.” Cell Reports, vol. 42, no. 3, 112132, Elsevier, 2023, doi:10.1016/j.celrep.2023.112132. short: D.B. Lyons, A. Briffa, S. He, J. Choi, E. Hollwey, J. Colicchio, I. Anderson, X. Feng, M. Howard, D. Zilberman, Cell Reports 42 (2023). date_created: 2023-02-23T09:17:44Z date_published: 2023-03-28T00:00:00Z date_updated: 2023-11-02T12:23:45Z day: '28' ddc: - '580' department: - _id: DaZi - _id: XiFe doi: 10.1016/j.celrep.2023.112132 ec_funded: 1 external_id: isi: - '000944921600001' file: - access_level: open_access checksum: 6cbc44fdb18bf18834c9e2a5b9c67123 content_type: application/pdf creator: kschuh date_created: 2023-05-11T10:41:42Z date_updated: 2023-05-11T10:41:42Z file_id: '12941' file_name: 2023_CellReports_Lyons.pdf file_size: 8401261 relation: main_file success: 1 file_date_updated: 2023-05-11T10:41:42Z has_accepted_license: '1' intvolume: ' 42' isi: 1 issue: '3' language: - iso: eng month: '03' oa: 1 oa_version: Published Version project: - _id: 62935a00-2b32-11ec-9570-eff30fa39068 call_identifier: H2020 grant_number: '725746' name: Quantitative analysis of DNA methylation maintenance with chromatin publication: Cell Reports publication_identifier: eissn: - 2211-1247 publication_status: published publisher: Elsevier quality_controlled: '1' scopus_import: '1' status: public title: Extensive de novo activity stabilizes epigenetic inheritance of CG methylation in Arabidopsis transposons tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87 volume: 42 year: '2023' ... --- _id: '13178' abstract: - lang: eng text: We consider the large polaron described by the Fröhlich Hamiltonian and study its energy-momentum relation defined as the lowest possible energy as a function of the total momentum. Using a suitable family of trial states, we derive an optimal parabolic upper bound for the energy-momentum relation in the limit of strong coupling. The upper bound consists of a momentum independent term that agrees with the predicted two-term expansion for the ground state energy of the strongly coupled polaron at rest and a term that is quadratic in the momentum with coefficient given by the inverse of twice the classical effective mass introduced by Landau and Pekar. acknowledgement: This research was supported by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme grant agreement No. 694227 (R.S.) and the Maria Skłodowska-Curie grant agreement No. 665386 (K.M.). article_processing_charge: Yes article_type: original author: - first_name: David Johannes full_name: Mitrouskas, David Johannes id: cbddacee-2b11-11eb-a02e-a2e14d04e52d last_name: Mitrouskas - first_name: Krzysztof full_name: Mysliwy, Krzysztof id: 316457FC-F248-11E8-B48F-1D18A9856A87 last_name: Mysliwy - first_name: Robert full_name: Seiringer, Robert id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 citation: ama: Mitrouskas DJ, Mysliwy K, Seiringer R. Optimal parabolic upper bound for the energy-momentum relation of a strongly coupled polaron. Forum of Mathematics. 2023;11:1-52. doi:10.1017/fms.2023.45 apa: Mitrouskas, D. J., Mysliwy, K., & Seiringer, R. (2023). Optimal parabolic upper bound for the energy-momentum relation of a strongly coupled polaron. Forum of Mathematics. Cambridge University Press. https://doi.org/10.1017/fms.2023.45 chicago: Mitrouskas, David Johannes, Krzysztof Mysliwy, and Robert Seiringer. “Optimal Parabolic Upper Bound for the Energy-Momentum Relation of a Strongly Coupled Polaron.” Forum of Mathematics. Cambridge University Press, 2023. https://doi.org/10.1017/fms.2023.45. ieee: D. J. Mitrouskas, K. Mysliwy, and R. Seiringer, “Optimal parabolic upper bound for the energy-momentum relation of a strongly coupled polaron,” Forum of Mathematics, vol. 11. Cambridge University Press, pp. 1–52, 2023. ista: Mitrouskas DJ, Mysliwy K, Seiringer R. 2023. Optimal parabolic upper bound for the energy-momentum relation of a strongly coupled polaron. Forum of Mathematics. 11, 1–52. mla: Mitrouskas, David Johannes, et al. “Optimal Parabolic Upper Bound for the Energy-Momentum Relation of a Strongly Coupled Polaron.” Forum of Mathematics, vol. 11, Cambridge University Press, 2023, pp. 1–52, doi:10.1017/fms.2023.45. short: D.J. Mitrouskas, K. Mysliwy, R. Seiringer, Forum of Mathematics 11 (2023) 1–52. date_created: 2023-07-02T22:00:43Z date_published: 2023-06-13T00:00:00Z date_updated: 2023-11-02T12:30:50Z day: '13' ddc: - '500' department: - _id: RoSe doi: 10.1017/fms.2023.45 ec_funded: 1 external_id: arxiv: - '2203.02454' isi: - '001005008800001' file: - access_level: open_access checksum: f672eb7dd015c472c9a04f1b9bf9df7d content_type: application/pdf creator: alisjak date_created: 2023-07-03T10:36:25Z date_updated: 2023-07-03T10:36:25Z file_id: '13186' file_name: 2023_ForumofMathematics.Sigma_Mitrouskas.pdf file_size: 943192 relation: main_file success: 1 file_date_updated: 2023-07-03T10:36:25Z has_accepted_license: '1' intvolume: ' 11' isi: 1 language: - iso: eng month: '06' oa: 1 oa_version: Published Version page: 1-52 project: - _id: 25C6DC12-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '694227' name: Analysis of quantum many-body systems publication: Forum of Mathematics publication_identifier: eissn: - 2050-5094 publication_status: published publisher: Cambridge University Press quality_controlled: '1' scopus_import: '1' status: public title: Optimal parabolic upper bound for the energy-momentum relation of a strongly coupled polaron tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87 volume: 11 year: '2023' ... --- _id: '14484' abstract: - lang: eng text: Intercellular signaling molecules, known as morphogens, act at a long range in developing tissues to provide spatial information and control properties such as cell fate and tissue growth. The production, transport, and removal of morphogens shape their concentration profiles in time and space. Downstream signaling cascades and gene regulatory networks within cells then convert the spatiotemporal morphogen profiles into distinct cellular responses. Current challenges are to understand the diverse molecular and cellular mechanisms underlying morphogen gradient formation, as well as the logic of downstream regulatory circuits involved in morphogen interpretation. This knowledge, combining experimental and theoretical results, is essential to understand emerging properties of morphogen-controlled systems, such as robustness and scaling. acknowledgement: We are grateful to Zena Hadjivasiliou for comments on this article. A.K. is supported by grants from the European Research Council under the European Union (EU) Horizon 2020 research and innovation program (680037) and Horizon Europe (101044579), and the Austrian Science Fund (F78) (Stem Cell Modulation). J.B. is supported by the Francis Crick Institute, which receives its core funding from Cancer Research UK (CC001051), the UK Medical Research Council (CC001051), and the Wellcome Trust (CC001051), and by a grant from the European Research Council under the EU Horizon 2020 research and innovation program (742138). article_processing_charge: Yes (in subscription journal) article_type: review author: - first_name: Anna full_name: Kicheva, Anna id: 3959A2A0-F248-11E8-B48F-1D18A9856A87 last_name: Kicheva orcid: 0000-0003-4509-4998 - first_name: James full_name: Briscoe, James last_name: Briscoe citation: ama: Kicheva A, Briscoe J. Control of tissue development by morphogens. Annual Review of Cell and Developmental Biology. 2023;39:91-121. doi:10.1146/annurev-cellbio-020823-011522 apa: Kicheva, A., & Briscoe, J. (2023). Control of tissue development by morphogens. Annual Review of Cell and Developmental Biology. Annual Reviews. https://doi.org/10.1146/annurev-cellbio-020823-011522 chicago: Kicheva, Anna, and James Briscoe. “Control of Tissue Development by Morphogens.” Annual Review of Cell and Developmental Biology. Annual Reviews, 2023. https://doi.org/10.1146/annurev-cellbio-020823-011522. ieee: A. Kicheva and J. Briscoe, “Control of tissue development by morphogens,” Annual Review of Cell and Developmental Biology, vol. 39. Annual Reviews, pp. 91–121, 2023. ista: Kicheva A, Briscoe J. 2023. Control of tissue development by morphogens. Annual Review of Cell and Developmental Biology. 39, 91–121. mla: Kicheva, Anna, and James Briscoe. “Control of Tissue Development by Morphogens.” Annual Review of Cell and Developmental Biology, vol. 39, Annual Reviews, 2023, pp. 91–121, doi:10.1146/annurev-cellbio-020823-011522. short: A. Kicheva, J. Briscoe, Annual Review of Cell and Developmental Biology 39 (2023) 91–121. date_created: 2023-11-05T23:00:53Z date_published: 2023-10-16T00:00:00Z date_updated: 2023-11-06T09:56:24Z day: '16' ddc: - '570' department: - _id: AnKi doi: 10.1146/annurev-cellbio-020823-011522 ec_funded: 1 external_id: pmid: - '37418774' file: - access_level: open_access checksum: 461726014cf5907010afbd418d3c13ec content_type: application/pdf creator: dernst date_created: 2023-11-06T09:47:50Z date_updated: 2023-11-06T09:47:50Z file_id: '14491' file_name: 2023_AnnualReviews_Kicheva.pdf file_size: 434819 relation: main_file success: 1 file_date_updated: 2023-11-06T09:47:50Z has_accepted_license: '1' intvolume: ' 39' language: - iso: eng month: '10' oa: 1 oa_version: Published Version page: 91-121 pmid: 1 project: - _id: B6FC0238-B512-11E9-945C-1524E6697425 call_identifier: H2020 grant_number: '680037' name: Coordination of Patterning And Growth In the Spinal Cord - _id: bd7e737f-d553-11ed-ba76-d69ffb5ee3aa grant_number: '101044579' name: Mechanisms of tissue size regulation in spinal cord development - _id: 059DF620-7A3F-11EA-A408-12923DDC885E grant_number: F07802 name: Morphogen control of growth and pattern in the spinal cord publication: Annual Review of Cell and Developmental Biology publication_identifier: eissn: - 1530-8995 issn: - 1081-0706 publication_status: published publisher: Annual Reviews quality_controlled: '1' scopus_import: '1' status: public title: Control of tissue development by morphogens tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 39 year: '2023' ... --- _id: '14488' abstract: - lang: eng text: 'Portrait viewpoint and illumination editing is an important problem with several applications in VR/AR, movies, and photography. Comprehensive knowledge of geometry and illumination is critical for obtaining photorealistic results. Current methods are unable to explicitly model in 3D while handling both viewpoint and illumination editing from a single image. In this paper, we propose VoRF, a novel approach that can take even a single portrait image as input and relight human heads under novel illuminations that can be viewed from arbitrary viewpoints. VoRF represents a human head as a continuous volumetric field and learns a prior model of human heads using a coordinate-based MLP with individual latent spaces for identity and illumination. The prior model is learned in an auto-decoder manner over a diverse class of head shapes and appearances, allowing VoRF to generalize to novel test identities from a single input image. Additionally, VoRF has a reflectance MLP that uses the intermediate features of the prior model for rendering One-Light-at-A-Time (OLAT) images under novel views. We synthesize novel illuminations by combining these OLAT images with target environment maps. Qualitative and quantitative evaluations demonstrate the effectiveness of VoRF for relighting and novel view synthesis, even when applied to unseen subjects under uncontrolled illumination. This work is an extension of Rao et al. (VoRF: Volumetric Relightable Faces 2022). We provide extensive evaluation and ablative studies of our model and also provide an application, where any face can be relighted using textual input.' acknowledgement: Open Access funding enabled and organized by Projekt DEAL. article_processing_charge: Yes (via OA deal) article_type: original author: - first_name: Pramod full_name: Rao, Pramod last_name: Rao - first_name: B. R. full_name: Mallikarjun, B. R. last_name: Mallikarjun - first_name: Gereon full_name: Fox, Gereon last_name: Fox - first_name: Tim full_name: Weyrich, Tim last_name: Weyrich - first_name: Bernd full_name: Bickel, Bernd id: 49876194-F248-11E8-B48F-1D18A9856A87 last_name: Bickel orcid: 0000-0001-6511-9385 - first_name: Hanspeter full_name: Pfister, Hanspeter last_name: Pfister - first_name: Wojciech full_name: Matusik, Wojciech last_name: Matusik - first_name: Fangneng full_name: Zhan, Fangneng last_name: Zhan - first_name: Ayush full_name: Tewari, Ayush last_name: Tewari - first_name: Christian full_name: Theobalt, Christian last_name: Theobalt - first_name: Mohamed full_name: Elgharib, Mohamed last_name: Elgharib citation: ama: Rao P, Mallikarjun BR, Fox G, et al. A deeper analysis of volumetric relightiable faces. International Journal of Computer Vision. 2023. doi:10.1007/s11263-023-01899-3 apa: Rao, P., Mallikarjun, B. R., Fox, G., Weyrich, T., Bickel, B., Pfister, H., … Elgharib, M. (2023). A deeper analysis of volumetric relightiable faces. International Journal of Computer Vision. Springer Nature. https://doi.org/10.1007/s11263-023-01899-3 chicago: Rao, Pramod, B. R. Mallikarjun, Gereon Fox, Tim Weyrich, Bernd Bickel, Hanspeter Pfister, Wojciech Matusik, et al. “A Deeper Analysis of Volumetric Relightiable Faces.” International Journal of Computer Vision. Springer Nature, 2023. https://doi.org/10.1007/s11263-023-01899-3. ieee: P. Rao et al., “A deeper analysis of volumetric relightiable faces,” International Journal of Computer Vision. Springer Nature, 2023. ista: Rao P, Mallikarjun BR, Fox G, Weyrich T, Bickel B, Pfister H, Matusik W, Zhan F, Tewari A, Theobalt C, Elgharib M. 2023. A deeper analysis of volumetric relightiable faces. International Journal of Computer Vision. mla: Rao, Pramod, et al. “A Deeper Analysis of Volumetric Relightiable Faces.” International Journal of Computer Vision, Springer Nature, 2023, doi:10.1007/s11263-023-01899-3. short: P. Rao, B.R. Mallikarjun, G. Fox, T. Weyrich, B. Bickel, H. Pfister, W. Matusik, F. Zhan, A. Tewari, C. Theobalt, M. Elgharib, International Journal of Computer Vision (2023). date_created: 2023-11-05T23:00:54Z date_published: 2023-10-31T00:00:00Z date_updated: 2023-11-06T08:52:30Z day: '31' department: - _id: BeBi doi: 10.1007/s11263-023-01899-3 language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1007/s11263-023-01899-3 month: '10' oa: 1 oa_version: Published Version publication: International Journal of Computer Vision publication_identifier: eissn: - 1573-1405 issn: - 0920-5691 publication_status: epub_ahead publisher: Springer Nature quality_controlled: '1' scopus_import: '1' status: public title: A deeper analysis of volumetric relightiable faces type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2023' ... --- _id: '14487' abstract: - lang: eng text: High Mountain Asia (HMA) is among the most vulnerable water towers globally and yet future projections of water availability in and from its high-mountain catchments remain uncertain, as their hydrologic response to ongoing environmental changes is complex. Mechanistic modeling approaches incorporating cryospheric, hydrological, and vegetation processes in high spatial, temporal, and physical detail have never been applied for high-elevation catchments of HMA. We use a land surface model at high spatial and temporal resolution (100 m and hourly) to simulate the coupled dynamics of energy, water, and vegetation for the 350 km2 Langtang catchment (Nepal). We compare our model outputs for one hydrological year against a large set of observations to gain insight into the partitioning of the water balance at the subseasonal scale and across elevation bands. During the simulated hydrological year, we find that evapotranspiration is a key component of the total water balance, as it causes about the equivalent of 20% of all the available precipitation or 154% of the water production from glacier melt in the basin to return directly to the atmosphere. The depletion of the cryospheric water budget is dominated by snow melt, but at high elevations is primarily dictated by snow and ice sublimation. Snow sublimation is the dominant vapor flux (49%) at the catchment scale, accounting for the equivalent of 11% of snowfall, 17% of snowmelt, and 75% of ice melt, respectively. We conclude that simulations should consider sublimation and other evaporative fluxes explicitly, as otherwise water balance estimates can be ill-quantified. acknowledgement: This project has received funding from the JSPS-SNSF (Japan Society for the Promotion of Science and Swiss National Science Foundation) Bilateral Programmes project (HOPE, High-ele-vation precipitation in High Mountain Asia; Grant 183633), and the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation program (RAVEN, Rapid mass losses of debris-covered glaciers in High Mountain Asia; Grant 772751). We want to thank in particular T. Gurung, S. Joshi, J. Shea, W. Immerzeel, and others involved, as well as ICIMOD, for their efforts over the past years in observing the meteorology of the Langtang catchment, collecting and organizing the data and making them publicly available. We also thank the National Geographic Society (Grant NGS-61784R-19) and the Mount Everest Foundation (reference 19-24) for providing fieldwork funding for C. L. Fyffe. We thank T. Kramer for help with the WSL Hyperion cluster. We are grate-ful for comments by three anonymous reviewers and the Associate Editor, who greatly helped to improve the manuscript further. Open access funding provided by ETH-Bereich Forschungsanstalten. article_number: e2022WR033841 article_processing_charge: Yes (via OA deal) article_type: original author: - first_name: Pascal full_name: Buri, Pascal last_name: Buri - first_name: Simone full_name: Fatichi, Simone last_name: Fatichi - first_name: Thomas full_name: Shaw, Thomas id: 3caa3f91-1f03-11ee-96ce-e0e553054d6e last_name: Shaw - first_name: Evan S. full_name: Miles, Evan S. last_name: Miles - first_name: Michael full_name: Mccarthy, Michael id: 22a2674a-61ce-11ee-94b5-d18813baf16f last_name: Mccarthy - first_name: Catriona Louise full_name: Fyffe, Catriona Louise id: 001b0422-8d15-11ed-bc51-cab6c037a228 last_name: Fyffe - first_name: Stefan full_name: Fugger, Stefan last_name: Fugger - first_name: Shaoting full_name: Ren, Shaoting last_name: Ren - first_name: Marin full_name: Kneib, Marin last_name: Kneib - first_name: Achille full_name: Jouberton, Achille last_name: Jouberton - first_name: Jakob full_name: Steiner, Jakob last_name: Steiner - first_name: Koji full_name: Fujita, Koji last_name: Fujita - first_name: Francesca full_name: Pellicciotti, Francesca id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70 last_name: Pellicciotti orcid: 0000-0002-5554-8087 citation: ama: 'Buri P, Fatichi S, Shaw T, et al. Land surface modeling in the Himalayas: On the importance of evaporative fluxes for the water balance of a high-elevation catchment. Water Resources Research. 2023;59(10). doi:10.1029/2022WR033841' apa: 'Buri, P., Fatichi, S., Shaw, T., Miles, E. S., McCarthy, M., Fyffe, C. L., … Pellicciotti, F. (2023). Land surface modeling in the Himalayas: On the importance of evaporative fluxes for the water balance of a high-elevation catchment. Water Resources Research. Wiley. https://doi.org/10.1029/2022WR033841' chicago: 'Buri, Pascal, Simone Fatichi, Thomas Shaw, Evan S. Miles, Michael McCarthy, Catriona Louise Fyffe, Stefan Fugger, et al. “Land Surface Modeling in the Himalayas: On the Importance of Evaporative Fluxes for the Water Balance of a High-Elevation Catchment.” Water Resources Research. Wiley, 2023. https://doi.org/10.1029/2022WR033841.' ieee: 'P. Buri et al., “Land surface modeling in the Himalayas: On the importance of evaporative fluxes for the water balance of a high-elevation catchment,” Water Resources Research, vol. 59, no. 10. Wiley, 2023.' ista: 'Buri P, Fatichi S, Shaw T, Miles ES, McCarthy M, Fyffe CL, Fugger S, Ren S, Kneib M, Jouberton A, Steiner J, Fujita K, Pellicciotti F. 2023. Land surface modeling in the Himalayas: On the importance of evaporative fluxes for the water balance of a high-elevation catchment. Water Resources Research. 59(10), e2022WR033841.' mla: 'Buri, Pascal, et al. “Land Surface Modeling in the Himalayas: On the Importance of Evaporative Fluxes for the Water Balance of a High-Elevation Catchment.” Water Resources Research, vol. 59, no. 10, e2022WR033841, Wiley, 2023, doi:10.1029/2022WR033841.' short: P. Buri, S. Fatichi, T. Shaw, E.S. Miles, M. McCarthy, C.L. Fyffe, S. Fugger, S. Ren, M. Kneib, A. Jouberton, J. Steiner, K. Fujita, F. Pellicciotti, Water Resources Research 59 (2023). date_created: 2023-11-05T23:00:53Z date_published: 2023-10-25T00:00:00Z date_updated: 2023-11-07T08:12:34Z day: '25' ddc: - '550' department: - _id: FrPe doi: 10.1029/2022WR033841 file: - access_level: open_access checksum: 7ba9c87228dc09029b16bc800a0ef1a1 content_type: application/pdf creator: dernst date_created: 2023-11-07T08:10:44Z date_updated: 2023-11-07T08:10:44Z file_id: '14495' file_name: 2023_WaterResourcesResearch_Buri.pdf file_size: 5554901 relation: main_file success: 1 file_date_updated: 2023-11-07T08:10:44Z has_accepted_license: '1' intvolume: ' 59' issue: '10' language: - iso: eng license: https://creativecommons.org/licenses/by-nc-nd/4.0/ month: '10' oa: 1 oa_version: Published Version publication: Water Resources Research publication_identifier: eissn: - 1944-7973 issn: - 0043-1397 publication_status: published publisher: Wiley quality_controlled: '1' related_material: record: - id: '14494' relation: research_data status: public scopus_import: '1' status: public title: 'Land surface modeling in the Himalayas: On the importance of evaporative fluxes for the water balance of a high-elevation catchment' tmp: image: /images/cc_by_nc_nd.png legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) short: CC BY-NC-ND (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 59 year: '2023' ... --- _id: '14485' abstract: - lang: eng text: "Batching is a technique that stores multiple keys/values in each node of a data structure. In sequential search data structures, batching reduces latency by reducing the number of cache misses and shortening the chain of pointers to dereference. Applying batching to concurrent data structures is challenging, because it is difficult to maintain the search property and keep contention low in the presence of batching.\r\nIn this paper, we present a general methodology for leveraging batching in concurrent search data structures, called BatchBoost. BatchBoost builds a search data structure from distinct \"data\" and \"index\" layers. The data layer’s purpose is to store a batch of key/value pairs in each of its nodes. The index layer uses an unmodified concurrent search data structure to route operations to a position in the data layer that is \"close\" to where the corresponding key should exist. The requirements on the index and data layers are low: with minimal effort, we were able to compose three highly scalable concurrent search data structures based on three original data structures as the index layers with a batched version of the Lazy List as the data layer. The resulting BatchBoost data structures provide significant performance improvements over their original counterparts." alternative_title: - LIPIcs article_number: '35' article_processing_charge: Yes author: - first_name: Vitaly full_name: Aksenov, Vitaly last_name: Aksenov - first_name: Michael full_name: Anoprenko, Michael last_name: Anoprenko - first_name: Alexander full_name: Fedorov, Alexander id: 2e711909-896a-11ed-bdf8-eb0f5a2984c6 last_name: Fedorov - first_name: Michael full_name: Spear, Michael last_name: Spear citation: ama: 'Aksenov V, Anoprenko M, Fedorov A, Spear M. Brief announcement: BatchBoost: Universal batching for concurrent data structures. In: 37th International Symposium on Distributed Computing. Vol 281. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:10.4230/LIPIcs.DISC.2023.35' apa: 'Aksenov, V., Anoprenko, M., Fedorov, A., & Spear, M. (2023). Brief announcement: BatchBoost: Universal batching for concurrent data structures. In 37th International Symposium on Distributed Computing (Vol. 281). L’Aquila, Italy: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.DISC.2023.35' chicago: 'Aksenov, Vitaly, Michael Anoprenko, Alexander Fedorov, and Michael Spear. “Brief Announcement: BatchBoost: Universal Batching for Concurrent Data Structures.” In 37th International Symposium on Distributed Computing, Vol. 281. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. https://doi.org/10.4230/LIPIcs.DISC.2023.35.' ieee: 'V. Aksenov, M. Anoprenko, A. Fedorov, and M. Spear, “Brief announcement: BatchBoost: Universal batching for concurrent data structures,” in 37th International Symposium on Distributed Computing, L’Aquila, Italy, 2023, vol. 281.' ista: 'Aksenov V, Anoprenko M, Fedorov A, Spear M. 2023. Brief announcement: BatchBoost: Universal batching for concurrent data structures. 37th International Symposium on Distributed Computing. DISC: Symposium on Distributed Computing, LIPIcs, vol. 281, 35.' mla: 'Aksenov, Vitaly, et al. “Brief Announcement: BatchBoost: Universal Batching for Concurrent Data Structures.” 37th International Symposium on Distributed Computing, vol. 281, 35, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:10.4230/LIPIcs.DISC.2023.35.' short: V. Aksenov, M. Anoprenko, A. Fedorov, M. Spear, in:, 37th International Symposium on Distributed Computing, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. conference: end_date: 2023-10-13 location: L'Aquila, Italy name: 'DISC: Symposium on Distributed Computing' start_date: 2023-10-09 date_created: 2023-11-05T23:00:53Z date_published: 2023-10-01T00:00:00Z date_updated: 2023-11-07T07:48:01Z day: '01' ddc: - '000' department: - _id: GradSch doi: 10.4230/LIPIcs.DISC.2023.35 file: - access_level: open_access checksum: d9f8d2915cccdf2df5905b7cd1b4a560 content_type: application/pdf creator: dernst date_created: 2023-11-06T11:45:21Z date_updated: 2023-11-06T11:45:21Z file_id: '14492' file_name: 2023_LIPIcs_Aksenov.pdf file_size: 646665 relation: main_file success: 1 file_date_updated: 2023-11-06T11:45:21Z has_accepted_license: '1' intvolume: ' 281' language: - iso: eng month: '10' oa: 1 oa_version: Published Version publication: 37th International Symposium on Distributed Computing publication_identifier: isbn: - '9783959773010' issn: - 1868-8969 publication_status: published publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik quality_controlled: '1' scopus_import: '1' status: public title: 'Brief announcement: BatchBoost: Universal batching for concurrent data structures' tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 281 year: '2023' ... --- _id: '14486' abstract: - lang: eng text: We present a minimal model of ferroelectric large polarons, which are suggested as one of the mechanisms responsible for the unique charge transport properties of hybrid perovskites. We demonstrate that short-ranged charge–rotor interactions lead to long-range ferroelectric ordering of rotors, which strongly affects the carrier mobility. In the nonperturbative regime, where our theory cannot be reduced to any of the earlier models, we reveal that the polaron is characterized by large coherence length and a roughly tenfold increase of the effective mass as compared to the bare mass. These results are in good agreement with other theoretical predictions for ferroelectric polarons. Our model establishes a general phenomenological framework for ferroelectric polarons providing the starting point for future studies of their role in the transport properties of hybrid organic-inorganic perovskites. acknowledgement: We thank Zh. Alpichshev, A. Volosniev, and A. V. Zampetaki for fruitful discussions and comments. This project received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413. M.L. acknowledges support by the European Research Council (ERC) Starting Grant No. 801770 (ANGULON). article_number: '043016' article_processing_charge: Yes article_type: original author: - first_name: Georgios full_name: Koutentakis, Georgios id: d7b23d3a-9e21-11ec-b482-f76739596b95 last_name: Koutentakis - first_name: Areg full_name: Ghazaryan, Areg id: 4AF46FD6-F248-11E8-B48F-1D18A9856A87 last_name: Ghazaryan orcid: 0000-0001-9666-3543 - first_name: Mikhail full_name: Lemeshko, Mikhail id: 37CB05FA-F248-11E8-B48F-1D18A9856A87 last_name: Lemeshko orcid: 0000-0002-6990-7802 citation: ama: Koutentakis G, Ghazaryan A, Lemeshko M. Rotor lattice model of ferroelectric large polarons. Physical Review Research. 2023;5(4). doi:10.1103/PhysRevResearch.5.043016 apa: Koutentakis, G., Ghazaryan, A., & Lemeshko, M. (2023). Rotor lattice model of ferroelectric large polarons. Physical Review Research. American Physical Society. https://doi.org/10.1103/PhysRevResearch.5.043016 chicago: Koutentakis, Georgios, Areg Ghazaryan, and Mikhail Lemeshko. “Rotor Lattice Model of Ferroelectric Large Polarons.” Physical Review Research. American Physical Society, 2023. https://doi.org/10.1103/PhysRevResearch.5.043016. ieee: G. Koutentakis, A. Ghazaryan, and M. Lemeshko, “Rotor lattice model of ferroelectric large polarons,” Physical Review Research, vol. 5, no. 4. American Physical Society, 2023. ista: Koutentakis G, Ghazaryan A, Lemeshko M. 2023. Rotor lattice model of ferroelectric large polarons. Physical Review Research. 5(4), 043016. mla: Koutentakis, Georgios, et al. “Rotor Lattice Model of Ferroelectric Large Polarons.” Physical Review Research, vol. 5, no. 4, 043016, American Physical Society, 2023, doi:10.1103/PhysRevResearch.5.043016. short: G. Koutentakis, A. Ghazaryan, M. Lemeshko, Physical Review Research 5 (2023). date_created: 2023-11-05T23:00:53Z date_published: 2023-10-05T00:00:00Z date_updated: 2023-11-07T07:53:39Z day: '05' ddc: - '530' department: - _id: MiLe doi: 10.1103/PhysRevResearch.5.043016 ec_funded: 1 external_id: arxiv: - '2301.09875' file: - access_level: open_access checksum: cb8de8fed6e09df1a18bd5a5aec5c55c content_type: application/pdf creator: dernst date_created: 2023-11-07T07:52:46Z date_updated: 2023-11-07T07:52:46Z file_id: '14493' file_name: 2023_PhysReviewResearch_Koutentakis.pdf file_size: 1127522 relation: main_file success: 1 file_date_updated: 2023-11-07T07:52:46Z has_accepted_license: '1' intvolume: ' 5' issue: '4' language: - iso: eng month: '10' oa: 1 oa_version: Published Version project: - _id: fc2ed2f7-9c52-11eb-aca3-c01059dda49c call_identifier: H2020 grant_number: '101034413' name: 'IST-BRIDGE: International postdoctoral program' - _id: 2688CF98-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '801770' name: 'Angulon: physics and applications of a new quasiparticle' publication: Physical Review Research publication_identifier: issn: - 2643-1564 publication_status: published publisher: American Physical Society quality_controlled: '1' scopus_import: '1' status: public title: Rotor lattice model of ferroelectric large polarons tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 5 year: '2023' ... --- _id: '14313' abstract: - lang: eng text: To respond to auxin, the chief orchestrator of their multicellularity, plants evolved multiple receptor systems and signal transduction cascades. Despite decades of research, however, we are still lacking a satisfactory synthesis of various auxin signaling mechanisms. The chief discrepancy and historical controversy of the field is that of rapid and slow auxin effects on plant physiology and development. How is it possible that ions begin to trickle across the plasma membrane as soon as auxin enters the cell, even though the best-characterized transcriptional auxin pathway can take effect only after tens of minutes? Recently, unexpected progress has been made in understanding this and other unknowns of auxin signaling. We provide a perspective on these exciting developments and concepts whose general applicability might have ramifications beyond auxin signaling. acknowledgement: The opening quote is not intended to reflect any political views of the authors. The authors by no means endorse the rhetoric of Donald Rumsfeld or the 2003 invasion of Iraq by the United States. Nevertheless, Rumsfeld's quote led to both public and academic debates on the concept of known and unknown unknowns, which can be applied to the recent unexpected developments in the auxin signaling field. We thank Linlin Qi and Huihuang Chen for their suggestions on figure presentation and inspiring discussions of TIR1/AFB signaling. Finally, we thank Aroosa Hussain for discussion of Greek mythology. article_number: '102443' article_processing_charge: No article_type: review author: - first_name: Lukas full_name: Fiedler, Lukas id: 7c417475-8972-11ed-ae7b-8b674ca26986 last_name: Fiedler - first_name: Jiří full_name: Friml, Jiří id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 citation: ama: 'Fiedler L, Friml J. Rapid auxin signaling: Unknowns old and new. Current Opinion in Plant Biology. 2023;75(10). doi:10.1016/j.pbi.2023.102443' apa: 'Fiedler, L., & Friml, J. (2023). Rapid auxin signaling: Unknowns old and new. Current Opinion in Plant Biology. Elsevier. https://doi.org/10.1016/j.pbi.2023.102443' chicago: 'Fiedler, Lukas, and Jiří Friml. “Rapid Auxin Signaling: Unknowns Old and New.” Current Opinion in Plant Biology. Elsevier, 2023. https://doi.org/10.1016/j.pbi.2023.102443.' ieee: 'L. Fiedler and J. Friml, “Rapid auxin signaling: Unknowns old and new,” Current Opinion in Plant Biology, vol. 75, no. 10. Elsevier, 2023.' ista: 'Fiedler L, Friml J. 2023. Rapid auxin signaling: Unknowns old and new. Current Opinion in Plant Biology. 75(10), 102443.' mla: 'Fiedler, Lukas, and Jiří Friml. “Rapid Auxin Signaling: Unknowns Old and New.” Current Opinion in Plant Biology, vol. 75, no. 10, 102443, Elsevier, 2023, doi:10.1016/j.pbi.2023.102443.' short: L. Fiedler, J. Friml, Current Opinion in Plant Biology 75 (2023). date_created: 2023-09-10T22:01:11Z date_published: 2023-10-01T00:00:00Z date_updated: 2023-11-07T08:17:13Z day: '01' ddc: - '580' department: - _id: JiFr doi: 10.1016/j.pbi.2023.102443 external_id: pmid: - '37666097' file: - access_level: open_access checksum: 1c476c3414d2dfb0c85db0cb6cfd8a28 content_type: application/pdf creator: amally date_created: 2023-11-02T17:03:20Z date_updated: 2023-11-02T17:03:20Z file_id: '14482' file_name: Fiedler CurrOpinOlantBiol 2023_revised.pdf file_size: 737872 relation: main_file success: 1 file_date_updated: 2023-11-02T17:03:20Z has_accepted_license: '1' intvolume: ' 75' issue: '10' language: - iso: eng month: '10' oa: 1 oa_version: Submitted Version pmid: 1 publication: Current Opinion in Plant Biology publication_identifier: issn: - 1369-5266 publication_status: published publisher: Elsevier quality_controlled: '1' scopus_import: '1' status: public title: 'Rapid auxin signaling: Unknowns old and new' type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 75 year: '2023' ... --- _id: '14494' abstract: - lang: eng text: "We provide i) gridded initial conditions (.tif), ii) modeled gridded monthly outputs (.tif), and iii) modeled hourly outputs at the station locations (.txt) for the hydrological year 2019. Information about the variables and units can be found in the figures (.png) associated to each dataset. Details about the datasets can be found in the original publication by Buri and others (2023).\r\n\r\nBuri, P., Fatichi, S., Shaw, T. E., Miles, E. S., McCarthy, M. J., Fyffe, C. L., ... & Pellicciotti, F. (2023). Land Surface Modeling in the Himalayas: On the Importance of Evaporative Fluxes for the Water Balance of a High‐Elevation Catchment. Water Resources Research, 59(10), e2022WR033841. DOI: 10.1029/2022WR033841" article_processing_charge: No author: - first_name: Pascal full_name: Buri, Pascal last_name: Buri - first_name: Simone full_name: Fatichi, Simone last_name: Fatichi - first_name: Thomas full_name: Shaw, Thomas id: 3caa3f91-1f03-11ee-96ce-e0e553054d6e last_name: Shaw - first_name: 'Evan ' full_name: 'Miles, Evan ' last_name: Miles - first_name: Michael full_name: McCarthy, Michael id: 22a2674a-61ce-11ee-94b5-d18813baf16f last_name: McCarthy - first_name: Catriona Louise full_name: Fyffe, Catriona Louise id: 001b0422-8d15-11ed-bc51-cab6c037a228 last_name: Fyffe - first_name: Stefan full_name: Fugger, Stefan last_name: Fugger - first_name: Shaoting full_name: Ren, Shaoting last_name: Ren - first_name: Marin full_name: Kneib, Marin last_name: Kneib - first_name: Achille full_name: Jouberton, Achille last_name: Jouberton - first_name: Jakob full_name: Steiner, Jakob last_name: Steiner - first_name: Koji full_name: Fujita, Koji last_name: Fujita - first_name: Francesca full_name: Pellicciotti, Francesca id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70 last_name: Pellicciotti orcid: 0000-0002-5554-8087 citation: ama: 'Buri P, Fatichi S, Shaw T, et al. Model output data to “Land surface modeling in the Himalayas: on the importance of evaporative fluxes for the water balance of a high elevation catchment.” 2023. doi:10.5281/ZENODO.8402426' apa: 'Buri, P., Fatichi, S., Shaw, T., Miles, E., McCarthy, M., Fyffe, C. L., … Pellicciotti, F. (2023). Model output data to “Land surface modeling in the Himalayas: on the importance of evaporative fluxes for the water balance of a high elevation catchment.” Zenodo. https://doi.org/10.5281/ZENODO.8402426' chicago: 'Buri, Pascal, Simone Fatichi, Thomas Shaw, Evan Miles, Michael McCarthy, Catriona Louise Fyffe, Stefan Fugger, et al. “Model Output Data to ‘Land Surface Modeling in the Himalayas: On the Importance of Evaporative Fluxes for the Water Balance of a High Elevation Catchment.’” Zenodo, 2023. https://doi.org/10.5281/ZENODO.8402426.' ieee: 'P. Buri et al., “Model output data to ‘Land surface modeling in the Himalayas: on the importance of evaporative fluxes for the water balance of a high elevation catchment.’” Zenodo, 2023.' ista: 'Buri P, Fatichi S, Shaw T, Miles E, McCarthy M, Fyffe CL, Fugger S, Ren S, Kneib M, Jouberton A, Steiner J, Fujita K, Pellicciotti F. 2023. Model output data to ‘Land surface modeling in the Himalayas: on the importance of evaporative fluxes for the water balance of a high elevation catchment’, Zenodo, 10.5281/ZENODO.8402426.' mla: 'Buri, Pascal, et al. Model Output Data to “Land Surface Modeling in the Himalayas: On the Importance of Evaporative Fluxes for the Water Balance of a High Elevation Catchment.” Zenodo, 2023, doi:10.5281/ZENODO.8402426.' short: P. Buri, S. Fatichi, T. Shaw, E. Miles, M. McCarthy, C.L. Fyffe, S. Fugger, S. Ren, M. Kneib, A. Jouberton, J. Steiner, K. Fujita, F. Pellicciotti, (2023). date_created: 2023-11-07T08:01:39Z date_published: 2023-10-03T00:00:00Z date_updated: 2023-11-07T08:12:35Z day: '03' ddc: - '550' department: - _id: FrPe doi: 10.5281/ZENODO.8402426 has_accepted_license: '1' license: https://creativecommons.org/publicdomain/zero/1.0/ main_file_link: - open_access: '1' url: https://10.5281/ZENODO.8402426 month: '10' oa: 1 oa_version: Published Version publisher: Zenodo related_material: record: - id: '14487' relation: used_in_publication status: public status: public title: 'Model output data to "Land surface modeling in the Himalayas: on the importance of evaporative fluxes for the water balance of a high elevation catchment"' tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data_reference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2023' ... --- _id: '14499' abstract: - lang: eng text: "An n-vertex graph is called C-Ramsey if it has no clique or independent set of size Clog2n (i.e., if it has near-optimal Ramsey behavior). In this paper, we study edge statistics in Ramsey graphs, in particular obtaining very precise control of the distribution of the number of edges in a random vertex subset of a C-Ramsey graph. This brings together two ongoing lines of research: the study of ‘random-like’ properties of Ramsey graphs and the study of small-ball probability for low-degree polynomials of independent random variables.\r\n\r\nThe proof proceeds via an ‘additive structure’ dichotomy on the degree sequence and involves a wide range of different tools from Fourier analysis, random matrix theory, the theory of Boolean functions, probabilistic combinatorics and low-rank approximation. In particular, a key ingredient is a new sharpened version of the quadratic Carbery–Wright theorem on small-ball probability for polynomials of Gaussians, which we believe is of independent interest. One of the consequences of our result is the resolution of an old conjecture of Erdős and McKay, for which Erdős reiterated in several of his open problem collections and for which he offered one of his notorious monetary prizes." acknowledgement: Kwan was supported for part of this work by ERC Starting Grant ‘RANDSTRUCT’ No. 101076777. Sah and Sawhney were supported by NSF Graduate Research Fellowship Program DGE-2141064. Sah was supported by the PD Soros Fellowship. Sauermann was supported by NSF Award DMS-2100157, and for part of this work by a Sloan Research Fellowship. article_number: e21 article_processing_charge: Yes article_type: original author: - first_name: Matthew Alan full_name: Kwan, Matthew Alan id: 5fca0887-a1db-11eb-95d1-ca9d5e0453b3 last_name: Kwan orcid: 0000-0002-4003-7567 - first_name: Ashwin full_name: Sah, Ashwin last_name: Sah - first_name: Lisa full_name: Sauermann, Lisa last_name: Sauermann - first_name: Mehtaab full_name: Sawhney, Mehtaab last_name: Sawhney citation: ama: Kwan MA, Sah A, Sauermann L, Sawhney M. Anticoncentration in Ramsey graphs and a proof of the Erdős–McKay conjecture. Forum of Mathematics, Pi. 2023;11. doi:10.1017/fmp.2023.17 apa: Kwan, M. A., Sah, A., Sauermann, L., & Sawhney, M. (2023). Anticoncentration in Ramsey graphs and a proof of the Erdős–McKay conjecture. Forum of Mathematics, Pi. Cambridge University Press. https://doi.org/10.1017/fmp.2023.17 chicago: Kwan, Matthew Alan, Ashwin Sah, Lisa Sauermann, and Mehtaab Sawhney. “Anticoncentration in Ramsey Graphs and a Proof of the Erdős–McKay Conjecture.” Forum of Mathematics, Pi. Cambridge University Press, 2023. https://doi.org/10.1017/fmp.2023.17. ieee: M. A. Kwan, A. Sah, L. Sauermann, and M. Sawhney, “Anticoncentration in Ramsey graphs and a proof of the Erdős–McKay conjecture,” Forum of Mathematics, Pi, vol. 11. Cambridge University Press, 2023. ista: Kwan MA, Sah A, Sauermann L, Sawhney M. 2023. Anticoncentration in Ramsey graphs and a proof of the Erdős–McKay conjecture. Forum of Mathematics, Pi. 11, e21. mla: Kwan, Matthew Alan, et al. “Anticoncentration in Ramsey Graphs and a Proof of the Erdős–McKay Conjecture.” Forum of Mathematics, Pi, vol. 11, e21, Cambridge University Press, 2023, doi:10.1017/fmp.2023.17. short: M.A. Kwan, A. Sah, L. Sauermann, M. Sawhney, Forum of Mathematics, Pi 11 (2023). date_created: 2023-11-07T09:02:48Z date_published: 2023-08-24T00:00:00Z date_updated: 2023-11-07T09:18:57Z day: '24' ddc: - '510' department: - _id: MaKw doi: 10.1017/fmp.2023.17 external_id: arxiv: - '2208.02874' file: - access_level: open_access checksum: 54b824098d59073cc87a308d458b0a3e content_type: application/pdf creator: dernst date_created: 2023-11-07T09:16:23Z date_updated: 2023-11-07T09:16:23Z file_id: '14500' file_name: 2023_ForumMathematics_Kwan.pdf file_size: 1218719 relation: main_file success: 1 file_date_updated: 2023-11-07T09:16:23Z has_accepted_license: '1' intvolume: ' 11' keyword: - Discrete Mathematics and Combinatorics - Geometry and Topology - Mathematical Physics - Statistics and Probability - Algebra and Number Theory - Analysis language: - iso: eng month: '08' oa: 1 oa_version: Published Version project: - _id: bd95085b-d553-11ed-ba76-e55d3349be45 grant_number: '101076777' name: Randomness and structure in combinatorics publication: Forum of Mathematics, Pi publication_identifier: issn: - 2050-5086 publication_status: published publisher: Cambridge University Press quality_controlled: '1' scopus_import: '1' status: public title: Anticoncentration in Ramsey graphs and a proof of the Erdős–McKay conjecture tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 11 year: '2023' ... --- _id: '14281' abstract: - lang: eng text: In nature, proteins that switch between two conformations in response to environmental stimuli structurally transduce biochemical information in a manner analogous to how transistors control information flow in computing devices. Designing proteins with two distinct but fully structured conformations is a challenge for protein design as it requires sculpting an energy landscape with two distinct minima. Here we describe the design of “hinge” proteins that populate one designed state in the absence of ligand and a second designed state in the presence of ligand. X-ray crystallography, electron microscopy, double electron-electron resonance spectroscopy, and binding measurements demonstrate that despite the significant structural differences the two states are designed with atomic level accuracy and that the conformational and binding equilibria are closely coupled. article_processing_charge: No article_type: original author: - first_name: Florian M full_name: Praetorius, Florian M id: dfec9381-4341-11ee-8fd8-faa02bba7d62 last_name: Praetorius - first_name: Philip J. Y. full_name: Leung, Philip J. Y. last_name: Leung - first_name: Maxx H. full_name: Tessmer, Maxx H. last_name: Tessmer - first_name: Adam full_name: Broerman, Adam last_name: Broerman - first_name: Cullen full_name: Demakis, Cullen last_name: Demakis - first_name: Acacia F. full_name: Dishman, Acacia F. last_name: Dishman - first_name: Arvind full_name: Pillai, Arvind last_name: Pillai - first_name: Abbas full_name: Idris, Abbas last_name: Idris - first_name: David full_name: Juergens, David last_name: Juergens - first_name: Justas full_name: Dauparas, Justas last_name: Dauparas - first_name: Xinting full_name: Li, Xinting last_name: Li - first_name: Paul M. full_name: Levine, Paul M. last_name: Levine - first_name: Mila full_name: Lamb, Mila last_name: Lamb - first_name: Ryanne K. full_name: Ballard, Ryanne K. last_name: Ballard - first_name: Stacey R. full_name: Gerben, Stacey R. last_name: Gerben - first_name: Hannah full_name: Nguyen, Hannah last_name: Nguyen - first_name: Alex full_name: Kang, Alex last_name: Kang - first_name: Banumathi full_name: Sankaran, Banumathi last_name: Sankaran - first_name: Asim K. full_name: Bera, Asim K. last_name: Bera - first_name: Brian F. full_name: Volkman, Brian F. last_name: Volkman - first_name: Jeff full_name: Nivala, Jeff last_name: Nivala - first_name: Stefan full_name: Stoll, Stefan last_name: Stoll - first_name: David full_name: Baker, David last_name: Baker citation: ama: Praetorius FM, Leung PJY, Tessmer MH, et al. Design of stimulus-responsive two-state hinge proteins. Science. 2023;381(6659):754-760. doi:10.1126/science.adg7731 apa: Praetorius, F. M., Leung, P. J. Y., Tessmer, M. H., Broerman, A., Demakis, C., Dishman, A. F., … Baker, D. (2023). Design of stimulus-responsive two-state hinge proteins. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.adg7731 chicago: Praetorius, Florian M, Philip J. Y. Leung, Maxx H. Tessmer, Adam Broerman, Cullen Demakis, Acacia F. Dishman, Arvind Pillai, et al. “Design of Stimulus-Responsive Two-State Hinge Proteins.” Science. American Association for the Advancement of Science, 2023. https://doi.org/10.1126/science.adg7731. ieee: F. M. Praetorius et al., “Design of stimulus-responsive two-state hinge proteins,” Science, vol. 381, no. 6659. American Association for the Advancement of Science, pp. 754–760, 2023. ista: Praetorius FM, Leung PJY, Tessmer MH, Broerman A, Demakis C, Dishman AF, Pillai A, Idris A, Juergens D, Dauparas J, Li X, Levine PM, Lamb M, Ballard RK, Gerben SR, Nguyen H, Kang A, Sankaran B, Bera AK, Volkman BF, Nivala J, Stoll S, Baker D. 2023. Design of stimulus-responsive two-state hinge proteins. Science. 381(6659), 754–760. mla: Praetorius, Florian M., et al. “Design of Stimulus-Responsive Two-State Hinge Proteins.” Science, vol. 381, no. 6659, American Association for the Advancement of Science, 2023, pp. 754–60, doi:10.1126/science.adg7731. short: F.M. Praetorius, P.J.Y. Leung, M.H. Tessmer, A. Broerman, C. Demakis, A.F. Dishman, A. Pillai, A. Idris, D. Juergens, J. Dauparas, X. Li, P.M. Levine, M. Lamb, R.K. Ballard, S.R. Gerben, H. Nguyen, A. Kang, B. Sankaran, A.K. Bera, B.F. Volkman, J. Nivala, S. Stoll, D. Baker, Science 381 (2023) 754–760. date_created: 2023-09-06T12:04:23Z date_published: 2023-08-17T00:00:00Z date_updated: 2023-11-07T12:42:09Z day: '17' doi: 10.1126/science.adg7731 extern: '1' external_id: pmid: - '37590357' intvolume: ' 381' issue: '6659' language: - iso: eng month: '08' oa_version: None page: 754-760 pmid: 1 publication: Science publication_identifier: eissn: - 1095-9203 issn: - 0036-8075 publication_status: published publisher: American Association for the Advancement of Science quality_controlled: '1' scopus_import: '1' status: public title: Design of stimulus-responsive two-state hinge proteins type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 381 year: '2023' ... --- _id: '14294' abstract: - lang: eng text: Growth factors and cytokines signal by binding to the extracellular domains of their receptors and drive association and transphosphorylation of the receptor intracellular tyrosine kinase domains, initiating downstream signaling cascades. To enable systematic exploration of how receptor valency and geometry affects signaling outcomes, we designed cyclic homo-oligomers with up to 8 subunits using repeat protein building blocks that can be modularly extended. By incorporating a de novo designed fibroblast growth-factor receptor (FGFR) binding module into these scaffolds, we generated a series of synthetic signaling ligands that exhibit potent valency- and geometry-dependent Ca2+ release and MAPK pathway activation. The high specificity of the designed agonists reveal distinct roles for two FGFR splice variants in driving endothelial and mesenchymal cell fates during early vascular development. The ability to incorporate receptor binding domains and repeat extensions in a modular fashion makes our designed scaffolds broadly useful for probing and manipulating cellular signaling pathways. article_processing_charge: No author: - first_name: Natasha I full_name: Edman, Natasha I last_name: Edman - first_name: Rachel L full_name: Redler, Rachel L last_name: Redler - first_name: Ashish full_name: Phal, Ashish last_name: Phal - first_name: Thomas full_name: Schlichthaerle, Thomas last_name: Schlichthaerle - first_name: Sanjay R full_name: Srivatsan, Sanjay R last_name: Srivatsan - first_name: Ali full_name: Etemadi, Ali last_name: Etemadi - first_name: Seong full_name: An, Seong last_name: An - first_name: Andrew full_name: Favor, Andrew last_name: Favor - first_name: Devon full_name: Ehnes, Devon last_name: Ehnes - first_name: Zhe full_name: Li, Zhe last_name: Li - first_name: Florian M full_name: Praetorius, Florian M id: dfec9381-4341-11ee-8fd8-faa02bba7d62 last_name: Praetorius - first_name: Max full_name: Gordon, Max last_name: Gordon - first_name: Wei full_name: Yang, Wei last_name: Yang - first_name: Brian full_name: Coventry, Brian last_name: Coventry - first_name: Derrick R full_name: Hicks, Derrick R last_name: Hicks - first_name: Longxing full_name: Cao, Longxing last_name: Cao - first_name: Neville full_name: Bethel, Neville last_name: Bethel - first_name: Piper full_name: Heine, Piper last_name: Heine - first_name: Analisa N full_name: Murray, Analisa N last_name: Murray - first_name: Stacey full_name: Gerben, Stacey last_name: Gerben - first_name: Lauren full_name: Carter, Lauren last_name: Carter - first_name: Marcos full_name: Miranda, Marcos last_name: Miranda - first_name: Babak full_name: Negahdari, Babak last_name: Negahdari - first_name: Sangwon full_name: Lee, Sangwon last_name: Lee - first_name: Cole full_name: Trapnell, Cole last_name: Trapnell - first_name: Lance full_name: Stewart, Lance last_name: Stewart - first_name: Damian C full_name: Ekiert, Damian C last_name: Ekiert - first_name: Joseph full_name: Schlessinger, Joseph last_name: Schlessinger - first_name: Jay full_name: Shendure, Jay last_name: Shendure - first_name: Gira full_name: Bhabha, Gira last_name: Bhabha - first_name: Hannele full_name: Ruohola-Baker, Hannele last_name: Ruohola-Baker - first_name: David full_name: Baker, David last_name: Baker citation: ama: Edman NI, Redler RL, Phal A, et al. Modulation of FGF pathway signaling and vascular differentiation using designed oligomeric assemblies. bioRxiv. doi:10.1101/2023.03.14.532666 apa: Edman, N. I., Redler, R. L., Phal, A., Schlichthaerle, T., Srivatsan, S. R., Etemadi, A., … Baker, D. (n.d.). Modulation of FGF pathway signaling and vascular differentiation using designed oligomeric assemblies. bioRxiv. https://doi.org/10.1101/2023.03.14.532666 chicago: Edman, Natasha I, Rachel L Redler, Ashish Phal, Thomas Schlichthaerle, Sanjay R Srivatsan, Ali Etemadi, Seong An, et al. “Modulation of FGF Pathway Signaling and Vascular Differentiation Using Designed Oligomeric Assemblies.” BioRxiv, n.d. https://doi.org/10.1101/2023.03.14.532666. ieee: N. I. Edman et al., “Modulation of FGF pathway signaling and vascular differentiation using designed oligomeric assemblies,” bioRxiv. . ista: Edman NI, Redler RL, Phal A, Schlichthaerle T, Srivatsan SR, Etemadi A, An S, Favor A, Ehnes D, Li Z, Praetorius FM, Gordon M, Yang W, Coventry B, Hicks DR, Cao L, Bethel N, Heine P, Murray AN, Gerben S, Carter L, Miranda M, Negahdari B, Lee S, Trapnell C, Stewart L, Ekiert DC, Schlessinger J, Shendure J, Bhabha G, Ruohola-Baker H, Baker D. Modulation of FGF pathway signaling and vascular differentiation using designed oligomeric assemblies. bioRxiv, 10.1101/2023.03.14.532666. mla: Edman, Natasha I., et al. “Modulation of FGF Pathway Signaling and Vascular Differentiation Using Designed Oligomeric Assemblies.” BioRxiv, doi:10.1101/2023.03.14.532666. short: N.I. Edman, R.L. Redler, A. Phal, T. Schlichthaerle, S.R. Srivatsan, A. Etemadi, S. An, A. Favor, D. Ehnes, Z. Li, F.M. Praetorius, M. Gordon, W. Yang, B. Coventry, D.R. Hicks, L. Cao, N. Bethel, P. Heine, A.N. Murray, S. Gerben, L. Carter, M. Miranda, B. Negahdari, S. Lee, C. Trapnell, L. Stewart, D.C. Ekiert, J. Schlessinger, J. Shendure, G. Bhabha, H. Ruohola-Baker, D. Baker, BioRxiv (n.d.). date_created: 2023-09-06T12:31:49Z date_published: 2023-03-15T00:00:00Z date_updated: 2023-11-07T12:21:58Z day: '15' doi: 10.1101/2023.03.14.532666 extern: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1101/2023.03.14.532666 month: '03' oa: 1 oa_version: Preprint publication: bioRxiv publication_status: submitted status: public title: Modulation of FGF pathway signaling and vascular differentiation using designed oligomeric assemblies type: preprint user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2023' ... --- _id: '14513' abstract: - lang: eng text: Cold atomic gases have become a paradigmatic system for exploring fundamental physics, which at the same time allows for applications in quantum technologies. The accelerating developments in the field have led to a highly advanced set of engineering techniques that, for example, can tune interactions, shape the external geometry, select among a large set of atomic species with different properties, or control the number of atoms. In particular, it is possible to operate in lower dimensions and drive atomic systems into the strongly correlated regime. In this review, we discuss recent advances in few-body cold atom systems confined in low dimensions from a theoretical viewpoint. We mainly focus on bosonic systems in one dimension and provide an introduction to the static properties before we review the state-of-the-art research into quantum dynamical processes stimulated by the presence of correlations. Besides discussing the fundamental physical phenomena arising in these systems, we also provide an overview of the calculational and numerical tools and methods that are commonly used, thus delivering a balanced and comprehensive overview of the field. We conclude by giving an outlook on possible future directions that are interesting to explore in these correlated systems. acknowledgement: This review could not have been written without the many fruitful discussions and great collaborations with colleagues throughout the years, there are too many to mention. Here we acknowledge conversations regarding the context of the review with Joachim Brand, Fabian Brauneis, Adolfo del Campo, Alberto Cappellaro, Panagiotis Giannakeas, Tommaso Macrí, Oleksandr Marchukov, Lukas Rammelmüller and Manuel Valiente. S. I. M. acknowledges support from the NSF through a grant for ITAMP at Harvard University. T.F. acknowledges support from JSPS KAKENHI Grant Number JP23K03290 and T.F. and Th.B. acknowledge support from the Okinawa Institute for Science and Technology Graduate University, and JST Grant Number JPMJPF2221. A.F. and R. E. B. acknowledge support from CNPq (Conselho Nacional de Desenvolvimento Científico e Tecnológico) - Edital Universal 406563/2021-7. A. G. V. acknowledges support by European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411. P. S. is supported by the Cluster of Excellence ‘Advanced Imaging of Matter’ of the Deutsche Forschungsgemeinschaft (DFG) - EXC2056 - project ID 390715994. N. T. Z. is partially supported by the Independent Research Fund Denmark . article_processing_charge: No article_type: original author: - first_name: S. I. full_name: Mistakidis, S. I. last_name: Mistakidis - first_name: Artem full_name: Volosniev, Artem id: 37D278BC-F248-11E8-B48F-1D18A9856A87 last_name: Volosniev orcid: 0000-0003-0393-5525 - first_name: R. E. full_name: Barfknecht, R. E. last_name: Barfknecht - first_name: T. full_name: Fogarty, T. last_name: Fogarty - first_name: Th full_name: Busch, Th last_name: Busch - first_name: A. full_name: Foerster, A. last_name: Foerster - first_name: P. full_name: Schmelcher, P. last_name: Schmelcher - first_name: N. T. full_name: Zinner, N. T. last_name: Zinner citation: ama: Mistakidis SI, Volosniev A, Barfknecht RE, et al. Few-body Bose gases in low dimensions - A laboratory for quantum dynamics. Physics Reports. 2023;1042:1-108. doi:10.1016/j.physrep.2023.10.004 apa: Mistakidis, S. I., Volosniev, A., Barfknecht, R. E., Fogarty, T., Busch, T., Foerster, A., … Zinner, N. T. (2023). Few-body Bose gases in low dimensions - A laboratory for quantum dynamics. Physics Reports. Elsevier. https://doi.org/10.1016/j.physrep.2023.10.004 chicago: Mistakidis, S. I., Artem Volosniev, R. E. Barfknecht, T. Fogarty, Th Busch, A. Foerster, P. Schmelcher, and N. T. Zinner. “Few-Body Bose Gases in Low Dimensions - A Laboratory for Quantum Dynamics.” Physics Reports. Elsevier, 2023. https://doi.org/10.1016/j.physrep.2023.10.004. ieee: S. I. Mistakidis et al., “Few-body Bose gases in low dimensions - A laboratory for quantum dynamics,” Physics Reports, vol. 1042. Elsevier, pp. 1–108, 2023. ista: Mistakidis SI, Volosniev A, Barfknecht RE, Fogarty T, Busch T, Foerster A, Schmelcher P, Zinner NT. 2023. Few-body Bose gases in low dimensions - A laboratory for quantum dynamics. Physics Reports. 1042, 1–108. mla: Mistakidis, S. I., et al. “Few-Body Bose Gases in Low Dimensions - A Laboratory for Quantum Dynamics.” Physics Reports, vol. 1042, Elsevier, 2023, pp. 1–108, doi:10.1016/j.physrep.2023.10.004. short: S.I. Mistakidis, A. Volosniev, R.E. Barfknecht, T. Fogarty, T. Busch, A. Foerster, P. Schmelcher, N.T. Zinner, Physics Reports 1042 (2023) 1–108. date_created: 2023-11-12T23:00:54Z date_published: 2023-11-29T00:00:00Z date_updated: 2023-11-13T08:01:57Z day: '29' department: - _id: MiLe doi: 10.1016/j.physrep.2023.10.004 ec_funded: 1 external_id: arxiv: - '2202.11071' intvolume: ' 1042' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.48550/arXiv.2202.11071 month: '11' oa: 1 oa_version: Preprint page: 1-108 project: - _id: 260C2330-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '754411' name: ISTplus - Postdoctoral Fellowships publication: Physics Reports publication_identifier: issn: - 0370-1573 publication_status: published publisher: Elsevier quality_controlled: '1' scopus_import: '1' status: public title: Few-body Bose gases in low dimensions - A laboratory for quantum dynamics type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 1042 year: '2023' ... --- _id: '12869' abstract: - lang: eng text: 'We introduce a stochastic cellular automaton as a model for culture and border formation. The model can be conceptualized as a game where the expansion rate of cultures is quantified in terms of their area and perimeter in such a way that approximately round cultures get a competitive advantage. We first analyse the model with periodic boundary conditions, where we study how the model can end up in a fixed state, i.e. freezes. Then we implement the model on the European geography with mountains and rivers. We see how the model reproduces some qualitative features of European culture formation, namely that rivers and mountains are more frequently borders between cultures, mountainous regions tend to have higher cultural diversity and the central European plain has less clear cultural borders. ' acknowledgement: 'FRK acknowledges support from the Villum Foundation for support through the QMATH center of Excellence (Grant No. 10059) and the Villum Young Investigator (Grant No. 25452) programs. ' article_processing_charge: No author: - first_name: Frederik Ravn full_name: Klausen, Frederik Ravn last_name: Klausen - first_name: Asbjørn Bækgaard full_name: Lauritsen, Asbjørn Bækgaard id: e1a2682f-dc8d-11ea-abe3-81da9ac728f1 last_name: Lauritsen orcid: 0000-0003-4476-2288 citation: ama: 'Klausen FR, Lauritsen AB. Research data for: A stochastic cellular automaton model of culture formation. 2023. doi:10.15479/AT:ISTA:12869' apa: 'Klausen, F. R., & Lauritsen, A. B. (2023). Research data for: A stochastic cellular automaton model of culture formation. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:12869' chicago: 'Klausen, Frederik Ravn, and Asbjørn Bækgaard Lauritsen. “Research Data for: A Stochastic Cellular Automaton Model of Culture Formation.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/AT:ISTA:12869.' ieee: 'F. R. Klausen and A. B. Lauritsen, “Research data for: A stochastic cellular automaton model of culture formation.” Institute of Science and Technology Austria, 2023.' ista: 'Klausen FR, Lauritsen AB. 2023. Research data for: A stochastic cellular automaton model of culture formation, Institute of Science and Technology Austria, 10.15479/AT:ISTA:12869.' mla: 'Klausen, Frederik Ravn, and Asbjørn Bækgaard Lauritsen. Research Data for: A Stochastic Cellular Automaton Model of Culture Formation. Institute of Science and Technology Austria, 2023, doi:10.15479/AT:ISTA:12869.' short: F.R. Klausen, A.B. Lauritsen, (2023). date_created: 2023-04-26T12:34:49Z date_published: 2023-04-26T00:00:00Z date_updated: 2023-11-13T07:47:29Z day: '26' ddc: - '000' department: - _id: GradSch - _id: RoSe doi: 10.15479/AT:ISTA:12869 file: - access_level: open_access checksum: 85ede12d38bb8d944022a8cba4d719f5 content_type: application/octet-stream creator: alaurits date_created: 2023-04-26T12:30:06Z date_updated: 2023-04-26T12:30:06Z file_id: '12870' file_name: README.md file_size: 4567 relation: main_file success: 1 - access_level: open_access checksum: 25bf79452ae895f9c8a20571a096b4c3 content_type: application/x-zip-compressed creator: alaurits date_created: 2023-04-26T12:27:34Z date_updated: 2023-04-26T12:27:34Z file_id: '12871' file_name: simulations_era=10_flux_varied_europe.zip file_size: 732586731 relation: main_file success: 1 - access_level: open_access checksum: bca48d80ece73eb169aee7211a4a751a content_type: application/x-zip-compressed creator: alaurits date_created: 2023-04-26T12:29:53Z date_updated: 2023-04-26T12:29:53Z file_id: '12872' file_name: simulations_era=10_flux_varied_torus.zip file_size: 1743893150 relation: main_file success: 1 - access_level: open_access checksum: e77a655db15486a387a36362fbf0b665 content_type: application/x-zip-compressed creator: alaurits date_created: 2023-04-26T12:29:19Z date_updated: 2023-04-26T12:29:19Z file_id: '12873' file_name: simulations_era=10_R_varied_torus.zip file_size: 878391851 relation: main_file success: 1 - access_level: open_access checksum: 8556406513adc4aa2e0417f46680f627 content_type: application/x-zip-compressed creator: alaurits date_created: 2023-04-26T12:30:05Z date_updated: 2023-04-26T12:30:05Z file_id: '12874' file_name: simulations_era=100.zip file_size: 201652478 relation: main_file success: 1 file_date_updated: 2023-04-26T12:30:06Z has_accepted_license: '1' month: '04' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria related_material: record: - id: '14505' relation: used_in_publication status: for_moderation - id: '12890' relation: used_in_publication status: public status: public title: 'Research data for: A stochastic cellular automaton model of culture formation' tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2023' ... --- _id: '12890' abstract: - lang: eng text: We introduce a stochastic cellular automaton as a model for culture and border formation. The model can be conceptualized as a game where the expansion rate of cultures is quantified in terms of their area and perimeter in such a way that approximately geometrically round cultures get a competitive advantage. We first analyze the model with periodic boundary conditions, where we study how the model can end up in a fixed state, i.e., freezes. Then we implement the model on the European geography with mountains and rivers. We see how the model reproduces some qualitative features of European culture formation, namely, that rivers and mountains are more frequently borders between cultures, mountainous regions tend to have higher cultural diversity, and the central European plain has less clear cultural borders. acknowledgement: Thanks to Kim Sneppen, Svend Krøjer, Peter Wildemann, Peter Rasmussen and Kent Bækgaard Lauritsen for discussions and suggestions. FRK acknowledges support from the Villum Foundation for support through the QMATH center of Excellence (Grant No. 10059) and the Villum Young Investigator (Grant No. 25452) programs. article_number: '054307' article_processing_charge: No article_type: original author: - first_name: Frederik Ravn full_name: Klausen, Frederik Ravn last_name: Klausen - first_name: Asbjørn Bækgaard full_name: Lauritsen, Asbjørn Bækgaard id: e1a2682f-dc8d-11ea-abe3-81da9ac728f1 last_name: Lauritsen orcid: 0000-0003-4476-2288 citation: ama: Klausen FR, Lauritsen AB. Stochastic cellular automaton model of culture formation. Physical Review E. 2023;108(5). doi:10.1103/PhysRevE.108.054307 apa: Klausen, F. R., & Lauritsen, A. B. (2023). Stochastic cellular automaton model of culture formation. Physical Review E. American Physical Society. https://doi.org/10.1103/PhysRevE.108.054307 chicago: Klausen, Frederik Ravn, and Asbjørn Bækgaard Lauritsen. “Stochastic Cellular Automaton Model of Culture Formation.” Physical Review E. American Physical Society, 2023. https://doi.org/10.1103/PhysRevE.108.054307. ieee: F. R. Klausen and A. B. Lauritsen, “Stochastic cellular automaton model of culture formation,” Physical Review E, vol. 108, no. 5. American Physical Society, 2023. ista: Klausen FR, Lauritsen AB. 2023. Stochastic cellular automaton model of culture formation. Physical Review E. 108(5), 054307. mla: Klausen, Frederik Ravn, and Asbjørn Bækgaard Lauritsen. “Stochastic Cellular Automaton Model of Culture Formation.” Physical Review E, vol. 108, no. 5, 054307, American Physical Society, 2023, doi:10.1103/PhysRevE.108.054307. short: F.R. Klausen, A.B. Lauritsen, Physical Review E 108 (2023). date_created: 2023-05-04T08:35:01Z date_published: 2023-11-08T00:00:00Z date_updated: 2023-11-13T07:47:30Z day: '08' department: - _id: GradSch - _id: RoSe doi: 10.1103/PhysRevE.108.054307 external_id: arxiv: - '2305.02153' intvolume: ' 108' issue: '5' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.48550/arXiv.2305.02153 month: '11' oa: 1 oa_version: Preprint publication: Physical Review E publication_identifier: eissn: - 2470-0053 issn: - 2470-0045 publication_status: published publisher: American Physical Society quality_controlled: '1' related_material: link: - relation: software url: https://github.com/FrederikRavnKlausen/model-for-culture-formation record: - id: '12869' relation: research_data status: public scopus_import: '1' status: public title: Stochastic cellular automaton model of culture formation type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 108 year: '2023' ... --- _id: '14516' abstract: - lang: eng text: 'We revisit decentralized random beacons with a focus on practical distributed applications. Decentralized random beacons (Beaver and So, Eurocrypt''93) provide the functionality for n parties to generate an unpredictable sequence of bits in a way that cannot be biased, which is useful for any decentralized protocol requiring trusted randomness. Existing beacon constructions are highly inefficient in practical settings where protocol parties need to rejoin after crashes or disconnections, and more significantly where smart contracts may rely on arbitrary index points in high-volume streams. For this, we introduce a new notion of history-generating decentralized random beacons (HGDRBs). Roughly, the history-generation property of HGDRBs allows for previous beacon outputs to be efficiently generated knowing only the current value and the public key. At application layers, history-generation supports registering a sparser set of on-chain values if desired, so that apps like lotteries can utilize on-chain values without incurring high-frequency costs, enjoying all the benefits of DRBs implemented off-chain or with decoupled, special-purpose chains. Unlike rollups, HG is tailored specifically to recovering and verifying pseudorandom bit sequences and thus enjoys unique optimizations investigated in this work. We introduce STROBE: an efficient HGDRB construction which generalizes the original squaring-based RSA approach of Beaver and So. STROBE enjoys several useful properties that make it suited for practical applications that use beacons: 1) history-generating: it can regenerate and verify high-throughput beacon streams, supporting sparse (thus cost-effective) ledger entries; 2) concisely self-verifying: NIZK-free, with state and validation employing a single ring element; 3) eco-friendly: stake-based rather than work based; 4) unbounded: refresh-free, addressing limitations of Beaver and So; 5) delay-free: results are immediately available. 6) storage-efficient: the last beacon suffices to derive all past outputs, thus O(1) storage requirements for nodes serving the whole history.' acknowledgement: Work done when all the authors were at Novi Research, Meta. alternative_title: - LIPIcs article_number: '7' article_processing_charge: Yes author: - first_name: Donald full_name: Beaver, Donald last_name: Beaver - first_name: Mahimna full_name: Kelkar, Mahimna last_name: Kelkar - first_name: Kevin full_name: Lewi, Kevin last_name: Lewi - first_name: Valeria full_name: Nikolaenko, Valeria last_name: Nikolaenko - first_name: Alberto full_name: Sonnino, Alberto last_name: Sonnino - first_name: Konstantinos full_name: Chalkias, Konstantinos last_name: Chalkias - first_name: Eleftherios full_name: Kokoris Kogias, Eleftherios id: f5983044-d7ef-11ea-ac6d-fd1430a26d30 last_name: Kokoris Kogias - first_name: Ladi De full_name: Naurois, Ladi De last_name: Naurois - first_name: Arnab full_name: Roy, Arnab last_name: Roy citation: ama: 'Beaver D, Kelkar M, Lewi K, et al. STROBE: Streaming Threshold Random Beacons. In: 5th Conference on Advances in Financial Technologies. Vol 282. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:10.4230/LIPIcs.AFT.2023.7' apa: 'Beaver, D., Kelkar, M., Lewi, K., Nikolaenko, V., Sonnino, A., Chalkias, K., … Roy, A. (2023). STROBE: Streaming Threshold Random Beacons. In 5th Conference on Advances in Financial Technologies (Vol. 282). Princeton, NJ, United States: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.AFT.2023.7' chicago: 'Beaver, Donald, Mahimna Kelkar, Kevin Lewi, Valeria Nikolaenko, Alberto Sonnino, Konstantinos Chalkias, Eleftherios Kokoris Kogias, Ladi De Naurois, and Arnab Roy. “STROBE: Streaming Threshold Random Beacons.” In 5th Conference on Advances in Financial Technologies, Vol. 282. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. https://doi.org/10.4230/LIPIcs.AFT.2023.7.' ieee: 'D. Beaver et al., “STROBE: Streaming Threshold Random Beacons,” in 5th Conference on Advances in Financial Technologies, Princeton, NJ, United States, 2023, vol. 282.' ista: 'Beaver D, Kelkar M, Lewi K, Nikolaenko V, Sonnino A, Chalkias K, Kokoris Kogias E, Naurois LD, Roy A. 2023. STROBE: Streaming Threshold Random Beacons. 5th Conference on Advances in Financial Technologies. AFT: Conference on Advances in Financial Technologies, LIPIcs, vol. 282, 7.' mla: 'Beaver, Donald, et al. “STROBE: Streaming Threshold Random Beacons.” 5th Conference on Advances in Financial Technologies, vol. 282, 7, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:10.4230/LIPIcs.AFT.2023.7.' short: D. Beaver, M. Kelkar, K. Lewi, V. Nikolaenko, A. Sonnino, K. Chalkias, E. Kokoris Kogias, L.D. Naurois, A. Roy, in:, 5th Conference on Advances in Financial Technologies, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. conference: end_date: 2023-10-25 location: Princeton, NJ, United States name: 'AFT: Conference on Advances in Financial Technologies' start_date: 2023-10-23 date_created: 2023-11-12T23:00:55Z date_published: 2023-10-01T00:00:00Z date_updated: 2023-11-13T08:52:01Z day: '01' ddc: - '000' department: - _id: ElKo doi: 10.4230/LIPIcs.AFT.2023.7 file: - access_level: open_access checksum: c1f98831cb5149d6c030c41999e6e960 content_type: application/pdf creator: dernst date_created: 2023-11-13T08:44:34Z date_updated: 2023-11-13T08:44:34Z file_id: '14521' file_name: 2023_LIPIcs_Beaver.pdf file_size: 793495 relation: main_file success: 1 file_date_updated: 2023-11-13T08:44:34Z has_accepted_license: '1' intvolume: ' 282' language: - iso: eng main_file_link: - open_access: '1' url: https://eprint.iacr.org/2021/1643 month: '10' oa: 1 oa_version: Published Version publication: 5th Conference on Advances in Financial Technologies publication_identifier: isbn: - '9783959773034' issn: - 1868-8969 publication_status: published publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik quality_controlled: '1' scopus_import: '1' status: public title: 'STROBE: Streaming Threshold Random Beacons' tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 282 year: '2023' ... --- _id: '14517' abstract: - lang: eng text: 'State-of-the-art transmon qubits rely on large capacitors, which systematically improve their coherence due to reduced surface-loss participation. However, this approach increases both the footprint and the parasitic cross-coupling and is ultimately limited by radiation losses—a potential roadblock for scaling up quantum processors to millions of qubits. In this work we present transmon qubits with sizes as low as 36 × 39 µm2 with 100-nm-wide vacuum-gap capacitors that are micromachined from commercial silicon-on-insulator wafers and shadow evaporated with aluminum. We achieve a vacuum participation ratio up to 99.6% in an in-plane design that is compatible with standard coplanar circuits. Qubit relaxationtime measurements for small gaps with high zero-point electric field variance of up to 22 V/m reveal a double exponential decay indicating comparably strong qubit interaction with long-lived two-level systems. The exceptionally high selectivity of up to 20 dB to the superconductor-vacuum interface allows us to precisely back out the sub-single-photon dielectric loss tangent of aluminum oxide previously exposed to ambient conditions. In terms of future scaling potential, we achieve a ratio of qubit quality factor to a footprint area equal to 20 µm−2, which is comparable with the highest T1 devices relying on larger geometries, a value that could improve substantially for lower surface-loss superconductors. ' acknowledged_ssus: - _id: NanoFab acknowledgement: "This work was supported by the Austrian Science Fund (FWF) through BeyondC (F7105), the European Research Council under Grant Agreement No. 758053 (ERC StG QUNNECT) and a NOMIS foundation research grant. M.Z. was the recipient of a SAIA scholarship, E.R. of\r\na DOC fellowship of the Austrian Academy of Sciences, and M.P. of a Pöttinger scholarship at IST Austria. S.B. acknowledges support from Marie Skłodowska Curie Program No. 707438 (MSC-IF SUPEREOM). J.M.F. acknowledges support from the Horizon Europe Program HORIZON-CL4-2022-QUANTUM-01-SGA via Project No. 101113946 OpenSuperQPlus100 and the ISTA Nanofabrication Facility." article_number: '044054' article_processing_charge: No article_type: original author: - first_name: Martin full_name: Zemlicka, Martin id: 2DCF8DE6-F248-11E8-B48F-1D18A9856A87 last_name: Zemlicka - first_name: Elena full_name: Redchenko, Elena id: 2C21D6E8-F248-11E8-B48F-1D18A9856A87 last_name: Redchenko - first_name: Matilda full_name: Peruzzo, Matilda id: 3F920B30-F248-11E8-B48F-1D18A9856A87 last_name: Peruzzo orcid: 0000-0002-3415-4628 - first_name: Farid full_name: Hassani, Farid id: 2AED110C-F248-11E8-B48F-1D18A9856A87 last_name: Hassani orcid: 0000-0001-6937-5773 - first_name: Andrea full_name: Trioni, Andrea id: 42F71B44-F248-11E8-B48F-1D18A9856A87 last_name: Trioni - first_name: Shabir full_name: Barzanjeh, Shabir id: 2D25E1F6-F248-11E8-B48F-1D18A9856A87 last_name: Barzanjeh orcid: 0000-0003-0415-1423 - first_name: Johannes M full_name: Fink, Johannes M id: 4B591CBA-F248-11E8-B48F-1D18A9856A87 last_name: Fink orcid: 0000-0001-8112-028X citation: ama: 'Zemlicka M, Redchenko E, Peruzzo M, et al. Compact vacuum-gap transmon qubits: Selective and sensitive probes for superconductor surface losses. Physical Review Applied. 2023;20(4). doi:10.1103/PhysRevApplied.20.044054' apa: 'Zemlicka, M., Redchenko, E., Peruzzo, M., Hassani, F., Trioni, A., Barzanjeh, S., & Fink, J. M. (2023). Compact vacuum-gap transmon qubits: Selective and sensitive probes for superconductor surface losses. Physical Review Applied. American Physical Society. https://doi.org/10.1103/PhysRevApplied.20.044054' chicago: 'Zemlicka, Martin, Elena Redchenko, Matilda Peruzzo, Farid Hassani, Andrea Trioni, Shabir Barzanjeh, and Johannes M Fink. “Compact Vacuum-Gap Transmon Qubits: Selective and Sensitive Probes for Superconductor Surface Losses.” Physical Review Applied. American Physical Society, 2023. https://doi.org/10.1103/PhysRevApplied.20.044054.' ieee: 'M. Zemlicka et al., “Compact vacuum-gap transmon qubits: Selective and sensitive probes for superconductor surface losses,” Physical Review Applied, vol. 20, no. 4. American Physical Society, 2023.' ista: 'Zemlicka M, Redchenko E, Peruzzo M, Hassani F, Trioni A, Barzanjeh S, Fink JM. 2023. Compact vacuum-gap transmon qubits: Selective and sensitive probes for superconductor surface losses. Physical Review Applied. 20(4), 044054.' mla: 'Zemlicka, Martin, et al. “Compact Vacuum-Gap Transmon Qubits: Selective and Sensitive Probes for Superconductor Surface Losses.” Physical Review Applied, vol. 20, no. 4, 044054, American Physical Society, 2023, doi:10.1103/PhysRevApplied.20.044054.' short: M. Zemlicka, E. Redchenko, M. Peruzzo, F. Hassani, A. Trioni, S. Barzanjeh, J.M. Fink, Physical Review Applied 20 (2023). date_created: 2023-11-12T23:00:55Z date_published: 2023-10-20T00:00:00Z date_updated: 2023-11-13T09:22:47Z day: '20' department: - _id: JoFi doi: 10.1103/PhysRevApplied.20.044054 ec_funded: 1 external_id: arxiv: - '2206.14104' intvolume: ' 20' issue: '4' language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/2206.14104 month: '10' oa: 1 oa_version: Preprint project: - _id: 26927A52-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: F07105 name: Integrating superconducting quantum circuits - _id: 26336814-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '758053' name: A Fiber Optic Transceiver for Superconducting Qubits - _id: eb9b30ac-77a9-11ec-83b8-871f581d53d2 name: Protected states of quantum matter - _id: 258047B6-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '707438' name: 'Microwave-to-Optical Quantum Link: Quantum Teleportation and Quantum Illumination with cavity Optomechanics SUPEREOM' - _id: bdb7cfc1-d553-11ed-ba76-d2eaab167738 grant_number: '101080139' name: Open Superconducting Quantum Computers (OpenSuperQPlus) publication: Physical Review Applied publication_identifier: eissn: - 2331-7019 publication_status: published publisher: American Physical Society quality_controlled: '1' related_material: record: - id: '14520' relation: research_data status: public scopus_import: '1' status: public title: 'Compact vacuum-gap transmon qubits: Selective and sensitive probes for superconductor surface losses' type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 20 year: '2023' ... --- _id: '14515' abstract: - lang: eng text: Most natural and engineered information-processing systems transmit information via signals that vary in time. Computing the information transmission rate or the information encoded in the temporal characteristics of these signals requires the mutual information between the input and output signals as a function of time, i.e., between the input and output trajectories. Yet, this is notoriously difficult because of the high-dimensional nature of the trajectory space, and all existing techniques require approximations. We present an exact Monte Carlo technique called path weight sampling (PWS) that, for the first time, makes it possible to compute the mutual information between input and output trajectories for any stochastic system that is described by a master equation. The principal idea is to use the master equation to evaluate the exact conditional probability of an individual output trajectory for a given input trajectory and average this via Monte Carlo sampling in trajectory space to obtain the mutual information. We present three variants of PWS, which all generate the trajectories using the standard stochastic simulation algorithm. While direct PWS is a brute-force method, Rosenbluth-Rosenbluth PWS exploits the analogy between signal trajectory sampling and polymer sampling, and thermodynamic integration PWS is based on a reversible work calculation in trajectory space. PWS also makes it possible to compute the mutual information between input and output trajectories for systems with hidden internal states as well as systems with feedback from output to input. Applying PWS to the bacterial chemotaxis system, consisting of 182 coupled chemical reactions, demonstrates not only that the scheme is highly efficient but also that the number of receptor clusters is much smaller than hitherto believed, while their size is much larger. acknowledgement: "We thank Bela Mulder, Tom Shimizu, Fotios Avgidis, Peter Bolhuis, and Daan Frenkel for useful discussions and a careful reading of the manuscript, and we thank Age Tjalma for support with obtaining the Gaussian approximation of the chemotaxis system. This work is part of the Dutch Research Council (NWO) and was performed at the research institute AMOLF. This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (Grant Agreement No. 885065) and was\r\nfinancially supported by NWO through the “Building a Synthetic Cell (BaSyC)” Gravitation Grant (024.003.019)." article_number: '041017' article_processing_charge: Yes article_type: original author: - first_name: Manuel full_name: Reinhardt, Manuel last_name: Reinhardt - first_name: Gašper full_name: Tkačik, Gašper id: 3D494DCA-F248-11E8-B48F-1D18A9856A87 last_name: Tkačik orcid: 0000-0002-6699-1455 - first_name: Pieter Rein full_name: Ten Wolde, Pieter Rein last_name: Ten Wolde citation: ama: 'Reinhardt M, Tkačik G, Ten Wolde PR. Path weight sampling: Exact Monte Carlo computation of the mutual information between stochastic trajectories. Physical Review X. 2023;13(4). doi:10.1103/PhysRevX.13.041017' apa: 'Reinhardt, M., Tkačik, G., & Ten Wolde, P. R. (2023). Path weight sampling: Exact Monte Carlo computation of the mutual information between stochastic trajectories. Physical Review X. American Physical Society. https://doi.org/10.1103/PhysRevX.13.041017' chicago: 'Reinhardt, Manuel, Gašper Tkačik, and Pieter Rein Ten Wolde. “Path Weight Sampling: Exact Monte Carlo Computation of the Mutual Information between Stochastic Trajectories.” Physical Review X. American Physical Society, 2023. https://doi.org/10.1103/PhysRevX.13.041017.' ieee: 'M. Reinhardt, G. Tkačik, and P. R. Ten Wolde, “Path weight sampling: Exact Monte Carlo computation of the mutual information between stochastic trajectories,” Physical Review X, vol. 13, no. 4. American Physical Society, 2023.' ista: 'Reinhardt M, Tkačik G, Ten Wolde PR. 2023. Path weight sampling: Exact Monte Carlo computation of the mutual information between stochastic trajectories. Physical Review X. 13(4), 041017.' mla: 'Reinhardt, Manuel, et al. “Path Weight Sampling: Exact Monte Carlo Computation of the Mutual Information between Stochastic Trajectories.” Physical Review X, vol. 13, no. 4, 041017, American Physical Society, 2023, doi:10.1103/PhysRevX.13.041017.' short: M. Reinhardt, G. Tkačik, P.R. Ten Wolde, Physical Review X 13 (2023). date_created: 2023-11-12T23:00:55Z date_published: 2023-10-26T00:00:00Z date_updated: 2023-11-13T09:03:30Z day: '26' ddc: - '530' department: - _id: GaTk doi: 10.1103/PhysRevX.13.041017 external_id: arxiv: - '2203.03461' file: - access_level: open_access checksum: 32574aeebcca7347a4152c611b66b3d5 content_type: application/pdf creator: dernst date_created: 2023-11-13T09:00:19Z date_updated: 2023-11-13T09:00:19Z file_id: '14522' file_name: 2023_PhysReviewX_Reinhardt.pdf file_size: 1595223 relation: main_file success: 1 file_date_updated: 2023-11-13T09:00:19Z has_accepted_license: '1' intvolume: ' 13' issue: '4' language: - iso: eng month: '10' oa: 1 oa_version: Published Version publication: Physical Review X publication_identifier: eissn: - 2160-3308 publication_status: published publisher: American Physical Society quality_controlled: '1' scopus_import: '1' status: public title: 'Path weight sampling: Exact Monte Carlo computation of the mutual information between stochastic trajectories' tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 13 year: '2023' ...