[{"file":[{"access_level":"open_access","relation":"main_file","content_type":"application/x-zip-compressed","checksum":"4f1382ed4384751b6013398c11557bf6","file_id":"8280","success":1,"creator":"dernst","date_updated":"2020-08-18T08:03:23Z","file_size":5778420,"date_created":"2020-08-18T08:03:23Z","file_name":"Data_Rcode_MathematicaNB.zip"}],"day":"18","year":"2020","has_accepted_license":"1","date_created":"2020-08-12T12:49:23Z","contributor":[{"first_name":"Louise S","contributor_type":"data_collector","id":"2CFCFF98-F248-11E8-B48F-1D18A9856A87","last_name":"Arathoon"},{"first_name":"Parvathy","id":"455235B8-F248-11E8-B48F-1D18A9856A87","contributor_type":"project_member","last_name":"Surendranadh"},{"id":"4880FE40-F248-11E8-B48F-1D18A9856A87","contributor_type":"project_member","first_name":"Nicholas H","orcid":"0000-0002-8548-5240","last_name":"Barton"},{"contributor_type":"project_member","first_name":"David","id":"419049E2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4014-8478","last_name":"Field"},{"first_name":"Melinda","contributor_type":"project_member","id":"2C78037E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6118-0541","last_name":"Pickup"},{"last_name":"Baskett","contributor_type":"project_member","first_name":"Carina","id":"3B4A7CE2-F248-11E8-B48F-1D18A9856A87"}],"date_published":"2020-08-18T00:00:00Z","related_material":{"record":[{"relation":"later_version","status":"public","id":"11321"},{"id":"9192","status":"public","relation":"later_version"}]},"doi":"10.15479/AT:ISTA:8254","oa_version":"Published Version","abstract":[{"lang":"eng","text":"Here are the research data underlying the publication \"Estimating inbreeding and its effects in a long-term study of snapdragons (Antirrhinum majus)\". Further information are summed up in the README document.\r\nThe files for this record have been updated and are now found in the linked DOI https://doi.org/10.15479/AT:ISTA:9192."}],"month":"08","oa":1,"publisher":"Institute of Science and Technology Austria","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["576"],"date_updated":"2024-02-21T12:41:09Z","citation":{"ama":"Arathoon LS. Estimating inbreeding and its effects in a long-term study of snapdragons (Antirrhinum majus). 2020. doi:10.15479/AT:ISTA:8254","apa":"Arathoon, L. S. (2020). Estimating inbreeding and its effects in a long-term study of snapdragons (Antirrhinum majus). Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:8254","ieee":"L. S. Arathoon, “Estimating inbreeding and its effects in a long-term study of snapdragons (Antirrhinum majus).” Institute of Science and Technology Austria, 2020.","short":"L.S. Arathoon, (2020).","mla":"Arathoon, Louise S. Estimating Inbreeding and Its Effects in a Long-Term Study of Snapdragons (Antirrhinum Majus). Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:8254.","ista":"Arathoon LS. 2020. Estimating inbreeding and its effects in a long-term study of snapdragons (Antirrhinum majus), Institute of Science and Technology Austria, 10.15479/AT:ISTA:8254.","chicago":"Arathoon, Louise S. “Estimating Inbreeding and Its Effects in a Long-Term Study of Snapdragons (Antirrhinum Majus).” Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:8254."},"title":"Estimating inbreeding and its effects in a long-term study of snapdragons (Antirrhinum majus)","file_date_updated":"2020-08-18T08:03:23Z","department":[{"_id":"NiBa"}],"article_processing_charge":"No","author":[{"id":"2CFCFF98-F248-11E8-B48F-1D18A9856A87","first_name":"Louise S","orcid":"0000-0003-1771-714X","full_name":"Arathoon, Louise S","last_name":"Arathoon"}],"_id":"8254","status":"public","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"type":"research_data"},{"publisher":"Wiley","quality_controlled":"1","oa":1,"acknowledgement":"This work was supported by the National Key R&D Program of China (Grant Nos. 2016YFA0301701 and 2016YFA0300600), the NSFC (Grant Nos. 11574356, 11434010, and 11404252), the Strategic Priority Research Program of CAS (Grant No. XDB30000000), the ERC Starting Grant No. 335497, the FWF P32235 project, and the European Union's Horizon 2020 research and innovation program under Grant Agreement #862046. This research was supported by the Scientific Service Units of IST Austria through resources provided by the MIBA Machine Shop and the nanofabrication facility. F.L. thanks support from DOE (Grant No. DE‐FG02‐04ER46148). H.H. thanks the Startup Funding from Xi'an Jiaotong University.","date_published":"2020-04-23T00:00:00Z","doi":"10.1002/adma.201906523","date_created":"2020-02-28T09:47:00Z","isi":1,"has_accepted_license":"1","year":"2020","day":"23","publication":"Advanced Materials","project":[{"grant_number":"335497","name":"Towards Spin qubits and Majorana fermions in Germanium selfassembled hut-wires","call_identifier":"FP7","_id":"25517E86-B435-11E9-9278-68D0E5697425"},{"grant_number":"P32235","name":"Towards scalable hut wire quantum devices","call_identifier":"FWF","_id":"237B3DA4-32DE-11EA-91FC-C7463DDC885E"},{"grant_number":"862046","name":"TOPOLOGICALLY PROTECTED AND SCALABLE QUANTUM BITS","_id":"237E5020-32DE-11EA-91FC-C7463DDC885E","call_identifier":"H2020"}],"article_number":"1906523","author":[{"first_name":"Fei","full_name":"Gao, Fei","last_name":"Gao"},{"full_name":"Wang, Jian-Huan","last_name":"Wang","first_name":"Jian-Huan"},{"first_name":"Hannes","id":"35DF8E50-F248-11E8-B48F-1D18A9856A87","full_name":"Watzinger, Hannes","last_name":"Watzinger"},{"first_name":"Hao","last_name":"Hu","full_name":"Hu, Hao"},{"first_name":"Marko J.","last_name":"Rančić","full_name":"Rančić, Marko J."},{"last_name":"Zhang","full_name":"Zhang, Jie-Yin","first_name":"Jie-Yin"},{"full_name":"Wang, Ting","last_name":"Wang","first_name":"Ting"},{"full_name":"Yao, Yuan","last_name":"Yao","first_name":"Yuan"},{"first_name":"Gui-Lei","last_name":"Wang","full_name":"Wang, Gui-Lei"},{"id":"3F5D8856-F248-11E8-B48F-1D18A9856A87","first_name":"Josip","full_name":"Kukucka, Josip","last_name":"Kukucka"},{"first_name":"Lada","id":"31E9F056-F248-11E8-B48F-1D18A9856A87","last_name":"Vukušić","full_name":"Vukušić, Lada","orcid":"0000-0003-2424-8636"},{"last_name":"Kloeffel","full_name":"Kloeffel, Christoph","first_name":"Christoph"},{"full_name":"Loss, Daniel","last_name":"Loss","first_name":"Daniel"},{"first_name":"Feng","last_name":"Liu","full_name":"Liu, Feng"},{"id":"38DB5788-F248-11E8-B48F-1D18A9856A87","first_name":"Georgios","last_name":"Katsaros","full_name":"Katsaros, Georgios","orcid":"0000-0001-8342-202X"},{"last_name":"Zhang","full_name":"Zhang, Jian-Jun","first_name":"Jian-Jun"}],"article_processing_charge":"Yes (via OA deal)","external_id":{"isi":["000516660900001"]},"title":"Site-controlled uniform Ge/Si hut wires with electrically tunable spin-orbit coupling","citation":{"short":"F. Gao, J.-H. Wang, H. Watzinger, H. Hu, M.J. Rančić, J.-Y. Zhang, T. Wang, Y. Yao, G.-L. Wang, J. Kukucka, L. Vukušić, C. Kloeffel, D. Loss, F. Liu, G. Katsaros, J.-J. Zhang, Advanced Materials 32 (2020).","ieee":"F. Gao et al., “Site-controlled uniform Ge/Si hut wires with electrically tunable spin-orbit coupling,” Advanced Materials, vol. 32, no. 16. Wiley, 2020.","apa":"Gao, F., Wang, J.-H., Watzinger, H., Hu, H., Rančić, M. J., Zhang, J.-Y., … Zhang, J.-J. (2020). Site-controlled uniform Ge/Si hut wires with electrically tunable spin-orbit coupling. Advanced Materials. Wiley. https://doi.org/10.1002/adma.201906523","ama":"Gao F, Wang J-H, Watzinger H, et al. Site-controlled uniform Ge/Si hut wires with electrically tunable spin-orbit coupling. Advanced Materials. 2020;32(16). doi:10.1002/adma.201906523","mla":"Gao, Fei, et al. “Site-Controlled Uniform Ge/Si Hut Wires with Electrically Tunable Spin-Orbit Coupling.” Advanced Materials, vol. 32, no. 16, 1906523, Wiley, 2020, doi:10.1002/adma.201906523.","ista":"Gao F, Wang J-H, Watzinger H, Hu H, Rančić MJ, Zhang J-Y, Wang T, Yao Y, Wang G-L, Kukucka J, Vukušić L, Kloeffel C, Loss D, Liu F, Katsaros G, Zhang J-J. 2020. Site-controlled uniform Ge/Si hut wires with electrically tunable spin-orbit coupling. Advanced Materials. 32(16), 1906523.","chicago":"Gao, Fei, Jian-Huan Wang, Hannes Watzinger, Hao Hu, Marko J. Rančić, Jie-Yin Zhang, Ting Wang, et al. “Site-Controlled Uniform Ge/Si Hut Wires with Electrically Tunable Spin-Orbit Coupling.” Advanced Materials. Wiley, 2020. https://doi.org/10.1002/adma.201906523."},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","scopus_import":"1","month":"04","intvolume":" 32","abstract":[{"text":"Semiconductor nanowires have been playing a crucial role in the development of nanoscale devices for the realization of spin qubits, Majorana fermions, single photon emitters, nanoprocessors, etc. The monolithic growth of site‐controlled nanowires is a prerequisite toward the next generation of devices that will require addressability and scalability. Here, combining top‐down nanofabrication and bottom‐up self‐assembly, the growth of Ge wires on prepatterned Si (001) substrates with controllable position, distance, length, and structure is reported. This is achieved by a novel growth process that uses a SiGe strain‐relaxation template and can be potentially generalized to other material combinations. Transport measurements show an electrically tunable spin–orbit coupling, with a spin–orbit length similar to that of III–V materials. Also, charge sensing between quantum dots in closely spaced wires is observed, which underlines their potential for the realization of advanced quantum devices. The reported results open a path toward scalable qubit devices using nanowires on silicon.","lang":"eng"}],"acknowledged_ssus":[{"_id":"NanoFab"},{"_id":"M-Shop"}],"oa_version":"Published Version","issue":"16","related_material":{"record":[{"id":"7996","status":"public","relation":"dissertation_contains"},{"relation":"research_data","status":"public","id":"9222"}]},"volume":32,"ec_funded":1,"publication_identifier":{"issn":["0935-9648"]},"publication_status":"published","file":[{"success":1,"file_id":"8782","checksum":"c622737dc295972065782558337124a2","content_type":"application/pdf","relation":"main_file","access_level":"open_access","file_name":"2020_AdvancedMaterials_Gao.pdf","date_created":"2020-11-20T10:11:35Z","file_size":5242880,"date_updated":"2020-11-20T10:11:35Z","creator":"dernst"}],"language":[{"iso":"eng"}],"article_type":"original","type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"status":"public","_id":"7541","department":[{"_id":"GeKa"}],"file_date_updated":"2020-11-20T10:11:35Z","date_updated":"2024-02-21T12:42:12Z","ddc":["530"]},{"month":"12","publisher":"Institute of Science and Technology Austria","oa":1,"oa_version":"Published Version","abstract":[{"text":"Phenomenological relations such as Ohm’s or Fourier’s law have a venerable history in physics but are still scarce in biology. This situation restrains predictive theory. Here, we build on bacterial “growth laws,” which capture physiological feedback between translation and cell growth, to construct a minimal biophysical model for the combined action of ribosome-targeting antibiotics. Our model predicts drug interactions like antagonism or synergy solely from responses to individual drugs. We provide analytical results for limiting cases, which agree well with numerical results. We systematically refine the model by including direct physical interactions of different antibiotics on the ribosome. In a limiting case, our model provides a mechanistic underpinning for recent predictions of higher-order interactions that were derived using entropy maximization. We further refine the model to include the effects of antibiotics that mimic starvation and the presence of resistance genes. We describe the impact of a starvation-mimicking antibiotic on drug interactions analytically and verify it experimentally. Our extended model suggests a change in the type of drug interaction that depends on the strength of resistance, which challenges established rescaling paradigms. We experimentally show that the presence of unregulated resistance genes can lead to altered drug interaction, which agrees with the prediction of the model. While minimal, the model is readily adaptable and opens the door to predicting interactions of second and higher-order in a broad range of biological systems.","lang":"eng"}],"doi":"10.15479/AT:ISTA:8930","date_published":"2020-12-10T00:00:00Z","related_material":{"record":[{"id":"8997","status":"public","relation":"used_in_publication"}]},"contributor":[{"first_name":"Gašper","contributor_type":"supervisor","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","last_name":"Tkačik","orcid":"0000-0002-6699-1455"},{"id":"3E6DB97A-F248-11E8-B48F-1D18A9856A87","first_name":"Tobias","contributor_type":"supervisor","last_name":"Bollenbach"}],"date_created":"2020-12-09T15:04:02Z","file":[{"relation":"main_file","access_level":"open_access","content_type":"application/zip","success":1,"file_id":"8932","checksum":"60a818edeffaa7da1ebf5f8fbea9ba18","creator":"bkavcic","file_size":315494370,"date_updated":"2020-12-09T15:00:19Z","file_name":"PLoSCompBiol2020_datarep.zip","date_created":"2020-12-09T15:00:19Z"}],"day":"10","has_accepted_license":"1","year":"2020","status":"public","keyword":["Escherichia coli","antibiotic combinations","translation","growth laws","drug interactions","bacterial physiology","translation inhibitors"],"type":"research_data","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"_id":"8930","title":"Analysis scripts and research data for the paper \"Minimal biophysical model of combined antibiotic action\"","department":[{"_id":"GaTk"}],"file_date_updated":"2020-12-09T15:00:19Z","author":[{"id":"350F91D2-F248-11E8-B48F-1D18A9856A87","first_name":"Bor","orcid":"0000-0001-6041-254X","full_name":"Kavcic, Bor","last_name":"Kavcic"}],"article_processing_charge":"No","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["570"],"date_updated":"2024-02-21T12:41:42Z","citation":{"mla":"Kavcic, Bor. Analysis Scripts and Research Data for the Paper “Minimal Biophysical Model of Combined Antibiotic Action.” Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:8930.","apa":"Kavcic, B. (2020). Analysis scripts and research data for the paper “Minimal biophysical model of combined antibiotic action.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:8930","ama":"Kavcic B. Analysis scripts and research data for the paper “Minimal biophysical model of combined antibiotic action.” 2020. doi:10.15479/AT:ISTA:8930","short":"B. Kavcic, (2020).","ieee":"B. Kavcic, “Analysis scripts and research data for the paper ‘Minimal biophysical model of combined antibiotic action.’” Institute of Science and Technology Austria, 2020.","chicago":"Kavcic, Bor. “Analysis Scripts and Research Data for the Paper ‘Minimal Biophysical Model of Combined Antibiotic Action.’” Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:8930.","ista":"Kavcic B. 2020. Analysis scripts and research data for the paper ‘Minimal biophysical model of combined antibiotic action’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:8930."}},{"_id":"8951","keyword":["Gene regulatory networks","Gene expression","Escherichia coli","Synthetic Biology"],"status":"public","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"type":"research_data","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["570"],"date_updated":"2024-02-21T12:41:57Z","citation":{"ista":"Nagy-Staron AA. 2020. Sequences of gene regulatory network permutations for the article ‘Local genetic context shapes the function of a gene regulatory network’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:8951.","chicago":"Nagy-Staron, Anna A. “Sequences of Gene Regulatory Network Permutations for the Article ‘Local Genetic Context Shapes the Function of a Gene Regulatory Network.’” Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:8951.","short":"A.A. Nagy-Staron, (2020).","ieee":"A. A. Nagy-Staron, “Sequences of gene regulatory network permutations for the article ‘Local genetic context shapes the function of a gene regulatory network.’” Institute of Science and Technology Austria, 2020.","ama":"Nagy-Staron AA. Sequences of gene regulatory network permutations for the article “Local genetic context shapes the function of a gene regulatory network.” 2020. doi:10.15479/AT:ISTA:8951","apa":"Nagy-Staron, A. A. (2020). Sequences of gene regulatory network permutations for the article “Local genetic context shapes the function of a gene regulatory network.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:8951","mla":"Nagy-Staron, Anna A. Sequences of Gene Regulatory Network Permutations for the Article “Local Genetic Context Shapes the Function of a Gene Regulatory Network.” Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:8951."},"file_date_updated":"2020-12-20T22:01:44Z","department":[{"_id":"CaGu"}],"title":"Sequences of gene regulatory network permutations for the article \"Local genetic context shapes the function of a gene regulatory network\"","article_processing_charge":"No","author":[{"last_name":"Nagy-Staron","full_name":"Nagy-Staron, Anna A","orcid":"0000-0002-1391-8377","id":"3ABC5BA6-F248-11E8-B48F-1D18A9856A87","first_name":"Anna A"}],"oa_version":"Published Version","abstract":[{"lang":"eng","text":"Gene expression levels are influenced by multiple coexisting molecular mechanisms. Some of these interactions, such as those of transcription factors and promoters have been studied extensively. However, predicting phenotypes of gene regulatory networks remains a major challenge. Here, we use a well-defined synthetic gene regulatory network to study how network phenotypes depend on local genetic context, i.e. the genetic neighborhood of a transcription factor and its relative position. We show that one gene regulatory network with fixed topology can display not only quantitatively but also qualitatively different phenotypes, depending solely on the local genetic context of its components. Our results demonstrate that changes in local genetic context can place a single transcriptional unit within two separate regulons without the need for complex regulatory sequences. We propose that relative order of individual transcriptional units, with its potential for combinatorial complexity, plays an important role in shaping phenotypes of gene regulatory networks."}],"month":"12","oa":1,"publisher":"Institute of Science and Technology Austria","day":"21","file":[{"relation":"main_file","access_level":"open_access","content_type":"text/plain","success":1,"file_id":"8952","checksum":"f57862aeee1690c7effd2b1117d40ed1","creator":"bkavcic","file_size":523,"date_updated":"2020-12-20T09:52:52Z","file_name":"readme.txt","date_created":"2020-12-20T09:52:52Z"},{"content_type":"application/octet-stream","relation":"main_file","access_level":"open_access","success":1,"checksum":"f2c6d5232ec6d551b6993991e8689e9f","file_id":"8954","file_size":379228,"date_updated":"2020-12-20T22:01:44Z","creator":"bkavcic","file_name":"GRNs Research depository.gb","date_created":"2020-12-20T22:01:44Z"}],"year":"2020","has_accepted_license":"1","date_created":"2020-12-20T10:00:26Z","contributor":[{"last_name":"Nagy-Staron","id":"3ABC5BA6-F248-11E8-B48F-1D18A9856A87","first_name":"Anna A","contributor_type":"project_member"},{"id":"3AEC8556-F248-11E8-B48F-1D18A9856A87","first_name":"Kathrin","contributor_type":"project_member","last_name":"Tomasek"},{"last_name":"Caruso Carter","first_name":"Caroline","contributor_type":"project_member"},{"last_name":"Sonnleitner","contributor_type":"project_member","first_name":"Elisabeth"},{"id":"350F91D2-F248-11E8-B48F-1D18A9856A87","contributor_type":"project_member","first_name":"Bor","orcid":"0000-0001-6041-254X","last_name":"Kavcic"},{"contributor_type":"project_member","first_name":"Tiago","last_name":"Paixão"},{"first_name":"Calin C","contributor_type":"project_manager","id":"47F8433E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6220-2052","last_name":"Guet"}],"doi":"10.15479/AT:ISTA:8951","date_published":"2020-12-21T00:00:00Z","related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"9283"}]}},{"month":"01","oa":1,"publisher":"Institute of Science and Technology Austria","oa_version":"Published Version","abstract":[{"lang":"eng","text":"Organisms cope with change by employing transcriptional regulators. However, when faced with rare environments, the evolution of transcriptional regulators and their promoters may be too slow. We ask whether the intrinsic instability of gene duplication and amplification provides a generic alternative to canonical gene regulation. By real-time monitoring of gene copy number mutations in E. coli, we show that gene duplications and amplifications enable adaptation to fluctuating environments by rapidly generating copy number, and hence expression level, polymorphism. This ‘amplification-mediated gene expression tuning’ occurs on timescales similar to canonical gene regulation and can deal with rapid environmental changes. Mathematical modeling shows that amplifications also tune gene expression in stochastic environments where transcription factor-based schemes are hard to evolve or maintain. The fleeting nature of gene amplifications gives rise to a generic population-level mechanism that relies on genetic heterogeneity to rapidly tune expression of any gene, without leaving any genomic signature."}],"contributor":[{"id":"47F8433E-F248-11E8-B48F-1D18A9856A87","contributor_type":"project_leader","first_name":"Calin C","last_name":"Guet","orcid":"0000-0001-6220-2052"}],"date_created":"2020-01-28T10:41:49Z","related_material":{"record":[{"relation":"used_in_publication","id":"7652","status":"public"}]},"doi":"10.15479/AT:ISTA:7383","date_published":"2020-01-28T00:00:00Z","day":"28","file":[{"file_name":"Scripts.zip","date_created":"2020-01-28T10:39:40Z","file_size":73363365,"date_updated":"2020-07-14T12:47:57Z","creator":"rgrah","checksum":"9d292cf5207b3829225f44c044cdb3fd","file_id":"7384","content_type":"application/zip","relation":"main_file","access_level":"open_access"},{"creator":"rgrah","date_updated":"2020-07-14T12:47:57Z","file_size":962,"date_created":"2020-01-28T10:39:30Z","file_name":"READ_ME_MAIN.txt","access_level":"open_access","relation":"main_file","content_type":"text/plain","file_id":"7385","checksum":"4076ceab32ef588cc233802bab24c1ab"}],"year":"2020","has_accepted_license":"1","keyword":["Matlab scripts","analysis of microfluidics","mathematical model"],"status":"public","type":"research_data","_id":"7383","title":"Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression regulation","department":[{"_id":"CaGu"},{"_id":"GaTk"}],"file_date_updated":"2020-07-14T12:47:57Z","article_processing_charge":"No","author":[{"first_name":"Rok","id":"483E70DE-F248-11E8-B48F-1D18A9856A87","last_name":"Grah","orcid":"0000-0003-2539-3560","full_name":"Grah, Rok"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ieee":"R. Grah, “Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression regulation.” Institute of Science and Technology Austria, 2020.","short":"R. Grah, (2020).","apa":"Grah, R. (2020). Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression regulation. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:7383","ama":"Grah R. Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression regulation. 2020. doi:10.15479/AT:ISTA:7383","mla":"Grah, Rok. Matlab Scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression Regulation. Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:7383.","ista":"Grah R. 2020. Matlab scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression regulation, Institute of Science and Technology Austria, 10.15479/AT:ISTA:7383.","chicago":"Grah, Rok. “Matlab Scripts for the Paper: Gene Amplification as a Form of Population-Level Gene Expression Regulation.” Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:7383."},"date_updated":"2024-02-21T12:42:31Z"},{"oa":1,"publisher":"Institute of Science and Technology Austria","month":"03","oa_version":"Published Version","contributor":[{"id":"38DB5788-F248-11E8-B48F-1D18A9856A87","contributor_type":"research_group","first_name":"Georgios","last_name":"Katsaros"}],"license":"https://creativecommons.org/publicdomain/zero/1.0/","date_created":"2021-03-05T18:00:47Z","doi":"10.15479/AT:ISTA:9222","date_published":"2020-03-16T00:00:00Z","related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"7541"}]},"year":"2020","has_accepted_license":"1","day":"16","file":[{"content_type":"application/x-zip-compressed","access_level":"open_access","relation":"main_file","file_id":"9223","checksum":"41b66e195ed3dbd73077feee77b05652","date_updated":"2021-03-05T17:50:45Z","file_size":13317557,"creator":"gkatsaro","date_created":"2021-03-05T17:50:45Z","file_name":"DOI_SiteControlledHWs.zip"},{"date_created":"2021-03-10T07:31:50Z","file_name":"Readme.txt","creator":"dernst","date_updated":"2021-03-10T07:31:50Z","file_size":3515,"checksum":"a1dc5f710ba4b3bb7f248195ba754ab2","file_id":"9233","success":1,"access_level":"open_access","relation":"main_file","content_type":"text/plain"}],"tmp":{"image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)","short":"CC0 (1.0)"},"type":"research_data","status":"public","_id":"9222","article_processing_charge":"No","author":[{"last_name":"Katsaros","full_name":"Katsaros, Georgios","orcid":"0000-0001-8342-202X","first_name":"Georgios","id":"38DB5788-F248-11E8-B48F-1D18A9856A87"}],"department":[{"_id":"GeKa"}],"file_date_updated":"2021-03-10T07:31:50Z","title":"Transport data for: Site‐controlled uniform Ge/Si Hut wires with electrically tunable spin–orbit coupling","citation":{"mla":"Katsaros, Georgios. Transport Data for: Site‐controlled Uniform Ge/Si Hut Wires with Electrically Tunable Spin–Orbit Coupling. Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:9222.","apa":"Katsaros, G. (2020). Transport data for: Site‐controlled uniform Ge/Si Hut wires with electrically tunable spin–orbit coupling. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:9222","ama":"Katsaros G. Transport data for: Site‐controlled uniform Ge/Si Hut wires with electrically tunable spin–orbit coupling. 2020. doi:10.15479/AT:ISTA:9222","ieee":"G. Katsaros, “Transport data for: Site‐controlled uniform Ge/Si Hut wires with electrically tunable spin–orbit coupling.” Institute of Science and Technology Austria, 2020.","short":"G. Katsaros, (2020).","chicago":"Katsaros, Georgios. “Transport Data for: Site‐controlled Uniform Ge/Si Hut Wires with Electrically Tunable Spin–Orbit Coupling.” Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:9222.","ista":"Katsaros G. 2020. Transport data for: Site‐controlled uniform Ge/Si Hut wires with electrically tunable spin–orbit coupling, Institute of Science and Technology Austria, 10.15479/AT:ISTA:9222."},"date_updated":"2024-02-21T12:42:13Z","ddc":["530"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"_id":"8366","keyword":["computer-aided design","shape modeling","self-morphing","mechanical engineering"],"status":"public","type":"dissertation","ddc":["000"],"date_updated":"2024-02-21T12:44:29Z","supervisor":[{"first_name":"Bernd","id":"49876194-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6511-9385","full_name":"Bickel, Bernd","last_name":"Bickel"}],"file_date_updated":"2020-09-16T15:11:01Z","department":[{"_id":"BeBi"}],"oa_version":"Published Version","acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"ScienComp"}],"abstract":[{"text":"Fabrication of curved shells plays an important role in modern design, industry, and science. Among their remarkable properties are, for example, aesthetics of organic shapes, ability to evenly distribute loads, or efficient flow separation. They find applications across vast length scales ranging from sky-scraper architecture to microscopic devices. But, at\r\nthe same time, the design of curved shells and their manufacturing process pose a variety of challenges. In this thesis, they are addressed from several perspectives. In particular, this thesis presents approaches based on the transformation of initially flat sheets into the target curved surfaces. This involves problems of interactive design of shells with nontrivial mechanical constraints, inverse design of complex structural materials, and data-driven modeling of delicate and time-dependent physical properties. At the same time, two newly-developed self-morphing mechanisms targeting flat-to-curved transformation are presented.\r\nIn architecture, doubly curved surfaces can be realized as cold bent glass panelizations. Originally flat glass panels are bent into frames and remain stressed. This is a cost-efficient fabrication approach compared to hot bending, when glass panels are shaped plastically. However such constructions are prone to breaking during bending, and it is highly\r\nnontrivial to navigate the design space, keeping the panels fabricable and aesthetically pleasing at the same time. We introduce an interactive design system for cold bent glass façades, while previously even offline optimization for such scenarios has not been sufficiently developed. Our method is based on a deep learning approach providing quick\r\nand high precision estimation of glass panel shape and stress while handling the shape\r\nmultimodality.\r\nFabrication of smaller objects of scales below 1 m, can also greatly benefit from shaping originally flat sheets. In this respect, we designed new self-morphing shell mechanisms transforming from an initial flat state to a doubly curved state with high precision and detail. Our so-called CurveUps demonstrate the encodement of the geometric information\r\ninto the shell. Furthermore, we explored the frontiers of programmable materials and showed how temporal information can additionally be encoded into a flat shell. This allows prescribing deformation sequences for doubly curved surfaces and, thus, facilitates self-collision avoidance enabling complex shapes and functionalities otherwise impossible.\r\nBoth of these methods include inverse design tools keeping the user in the design loop.","lang":"eng"}],"month":"09","alternative_title":["ISTA Thesis"],"language":[{"iso":"eng"}],"file":[{"date_created":"2020-09-10T16:11:49Z","file_name":"thesis_rguseinov.pdf","date_updated":"2020-09-10T16:11:49Z","file_size":70950442,"creator":"rguseino","checksum":"f8da89553da36037296b0a80f14ebf50","file_id":"8367","success":1,"content_type":"application/pdf","access_level":"open_access","relation":"main_file"},{"access_level":"closed","relation":"source_file","content_type":"application/x-zip-compressed","file_id":"8374","checksum":"e8fd944c960c20e0e27e6548af69121d","creator":"rguseino","date_updated":"2020-09-16T15:11:01Z","file_size":76207597,"date_created":"2020-09-11T09:39:48Z","file_name":"thesis_source.zip"}],"publication_status":"published","degree_awarded":"PhD","publication_identifier":{"isbn":["978-3-99078-010-7"],"issn":["2663-337X"]},"ec_funded":1,"related_material":{"record":[{"status":"deleted","id":"7151","relation":"research_data"},{"relation":"part_of_dissertation","id":"7262","status":"public"},{"id":"8562","status":"public","relation":"part_of_dissertation"},{"id":"1001","status":"public","relation":"part_of_dissertation"},{"relation":"research_data","id":"8375","status":"public"}]},"project":[{"_id":"24F9549A-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and Modeling","grant_number":"715767"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","citation":{"ista":"Guseinov R. 2020. Computational design of curved thin shells: From glass façades to programmable matter. Institute of Science and Technology Austria.","chicago":"Guseinov, Ruslan. “Computational Design of Curved Thin Shells: From Glass Façades to Programmable Matter.” Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:8366.","apa":"Guseinov, R. (2020). Computational design of curved thin shells: From glass façades to programmable matter. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:8366","ama":"Guseinov R. Computational design of curved thin shells: From glass façades to programmable matter. 2020. doi:10.15479/AT:ISTA:8366","ieee":"R. Guseinov, “Computational design of curved thin shells: From glass façades to programmable matter,” Institute of Science and Technology Austria, 2020.","short":"R. Guseinov, Computational Design of Curved Thin Shells: From Glass Façades to Programmable Matter, Institute of Science and Technology Austria, 2020.","mla":"Guseinov, Ruslan. Computational Design of Curved Thin Shells: From Glass Façades to Programmable Matter. Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:8366."},"title":"Computational design of curved thin shells: From glass façades to programmable matter","article_processing_charge":"No","author":[{"orcid":"0000-0001-9819-5077","full_name":"Guseinov, Ruslan","last_name":"Guseinov","id":"3AB45EE2-F248-11E8-B48F-1D18A9856A87","first_name":"Ruslan"}],"acknowledgement":"During the work on this thesis, I received substantial support from IST Austria’s scientific service units. A big thank you to Todor Asenov and other Miba Machine Shop team members for their help with fabrication of experimental prototypes. In addition, I would like to thank Scientific Computing team for the support with high performance computing.\r\nFinancial support was provided by the European Research Council (ERC) under grant agreement No 715767 - MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and Modeling, which I gratefully acknowledge.","oa":1,"publisher":"Institute of Science and Technology Austria","day":"21","year":"2020","has_accepted_license":"1","date_created":"2020-09-10T16:19:55Z","doi":"10.15479/AT:ISTA:8366","date_published":"2020-09-21T00:00:00Z","page":"118"},{"intvolume":" 39","month":"11","scopus_import":"1","oa_version":"Submitted Version","abstract":[{"text":"Cold bent glass is a promising and cost-efficient method for realizing doubly curved glass facades. They are produced by attaching planar glass sheets to curved frames and require keeping the occurring stress within safe limits.\r\nHowever, it is very challenging to navigate the design space of cold bent glass panels due to the fragility of the material, which impedes the form-finding for practically feasible and aesthetically pleasing cold bent glass facades. We propose an interactive, data-driven approach for designing cold bent glass facades that can be seamlessly integrated into a typical architectural design pipeline. Our method allows non-expert users to interactively edit a parametric surface while providing real-time feedback on the deformed shape and maximum stress of cold bent glass panels. Designs are automatically refined to minimize several fairness criteria while maximal stresses are kept within glass limits. We achieve interactive frame rates by using a differentiable Mixture Density Network trained from more than a million simulations. Given a curved boundary, our regression model is capable of handling multistable\r\nconfigurations and accurately predicting the equilibrium shape of the panel and its corresponding maximal stress. We show predictions are highly accurate and validate our results with a physical realization of a cold bent glass surface.","lang":"eng"}],"acknowledged_ssus":[{"_id":"ScienComp"}],"ec_funded":1,"volume":39,"related_material":{"link":[{"relation":"press_release","url":"https://ist.ac.at/en/news/bend-dont-break/","description":"News on IST Homepage"}],"record":[{"id":"8366","status":"public","relation":"dissertation_contains"},{"relation":"research_data","status":"public","id":"8761"}]},"issue":"6","language":[{"iso":"eng"}],"file":[{"checksum":"c7f67717ad74e670b7daeae732abe151","file_id":"13084","success":1,"access_level":"open_access","relation":"main_file","content_type":"application/pdf","date_created":"2023-05-23T20:54:43Z","file_name":"coldglass.pdf","creator":"bbickel","date_updated":"2023-05-23T20:54:43Z","file_size":28964641}],"publication_status":"published","publication_identifier":{"eissn":["1557-7368"],"issn":["0730-0301"]},"status":"public","type":"journal_article","article_type":"original","_id":"8562","file_date_updated":"2023-05-23T20:54:43Z","department":[{"_id":"BeBi"}],"ddc":["000"],"date_updated":"2024-02-21T12:43:21Z","oa":1,"quality_controlled":"1","publisher":"Association for Computing Machinery","acknowledgement":"We thank IST Austria’s Scientific Computing team for their support, Corinna Datsiou and Sophie Pennetier for their expert input on the practical applications of cold bent glass, and Zaha Hadid Architects and Waagner Biro for providing the architectural datasets. Photo of Fondation Louis Vuitton by Francisco Anzola / CC BY 2.0 / cropped.\r\nPhoto of Opus by Danica O. Kus. This project has received funding from the European Union’s\r\nHorizon 2020 research and innovation program under grant agreement No 675789 - Algebraic Representations in Computer-Aided Design for complEx Shapes (ARCADES), from the European Research Council (ERC) under grant agreement No 715767 - MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and Modeling, and SFB-Transregio “Discretization in Geometry and Dynamics” through grant I 2978 of the Austrian Science Fund (FWF). F. Rist and K. Gavriil have been partially supported by KAUST baseline funding.","date_created":"2020-09-23T11:30:02Z","date_published":"2020-11-26T00:00:00Z","doi":"10.1145/3414685.3417843","publication":"ACM Transactions on Graphics","day":"26","year":"2020","isi":1,"has_accepted_license":"1","project":[{"name":"MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and Modeling","grant_number":"715767","_id":"24F9549A-B435-11E9-9278-68D0E5697425","call_identifier":"H2020"}],"article_number":"208","title":"Computational design of cold bent glass façades","external_id":{"isi":["000595589100048"],"arxiv":["2009.03667"]},"article_processing_charge":"No","author":[{"first_name":"Konstantinos","full_name":"Gavriil, Konstantinos","last_name":"Gavriil"},{"last_name":"Guseinov","full_name":"Guseinov, Ruslan","orcid":"0000-0001-9819-5077","id":"3AB45EE2-F248-11E8-B48F-1D18A9856A87","first_name":"Ruslan"},{"first_name":"Jesus","id":"2DC83906-F248-11E8-B48F-1D18A9856A87","full_name":"Perez Rodriguez, Jesus","last_name":"Perez Rodriguez"},{"first_name":"Davide","last_name":"Pellis","full_name":"Pellis, Davide"},{"full_name":"Henderson, Paul M","orcid":"0000-0002-5198-7445","last_name":"Henderson","first_name":"Paul M","id":"13C09E74-18D9-11E9-8878-32CFE5697425"},{"first_name":"Florian","full_name":"Rist, Florian","last_name":"Rist"},{"last_name":"Pottmann","full_name":"Pottmann, Helmut","first_name":"Helmut"},{"first_name":"Bernd","id":"49876194-F248-11E8-B48F-1D18A9856A87","full_name":"Bickel, Bernd","orcid":"0000-0001-6511-9385","last_name":"Bickel"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","citation":{"apa":"Gavriil, K., Guseinov, R., Perez Rodriguez, J., Pellis, D., Henderson, P. M., Rist, F., … Bickel, B. (2020). Computational design of cold bent glass façades. ACM Transactions on Graphics. Association for Computing Machinery. https://doi.org/10.1145/3414685.3417843","ama":"Gavriil K, Guseinov R, Perez Rodriguez J, et al. Computational design of cold bent glass façades. ACM Transactions on Graphics. 2020;39(6). doi:10.1145/3414685.3417843","ieee":"K. Gavriil et al., “Computational design of cold bent glass façades,” ACM Transactions on Graphics, vol. 39, no. 6. Association for Computing Machinery, 2020.","short":"K. Gavriil, R. Guseinov, J. Perez Rodriguez, D. Pellis, P.M. Henderson, F. Rist, H. Pottmann, B. Bickel, ACM Transactions on Graphics 39 (2020).","mla":"Gavriil, Konstantinos, et al. “Computational Design of Cold Bent Glass Façades.” ACM Transactions on Graphics, vol. 39, no. 6, 208, Association for Computing Machinery, 2020, doi:10.1145/3414685.3417843.","ista":"Gavriil K, Guseinov R, Perez Rodriguez J, Pellis D, Henderson PM, Rist F, Pottmann H, Bickel B. 2020. Computational design of cold bent glass façades. ACM Transactions on Graphics. 39(6), 208.","chicago":"Gavriil, Konstantinos, Ruslan Guseinov, Jesus Perez Rodriguez, Davide Pellis, Paul M Henderson, Florian Rist, Helmut Pottmann, and Bernd Bickel. “Computational Design of Cold Bent Glass Façades.” ACM Transactions on Graphics. Association for Computing Machinery, 2020. https://doi.org/10.1145/3414685.3417843."}},{"year":"2020","isi":1,"has_accepted_license":"1","publication":"Nano Letters","day":"01","page":"5201-5206","date_created":"2020-08-06T09:25:04Z","date_published":"2020-06-01T00:00:00Z","doi":"10.1021/acs.nanolett.0c01466","acknowledgement":"We acknowledge G. Burkard, V. N. Golovach, C. Kloeffel, D.Loss, P. Rabl, and M. Rancič ́ for helpful discussions. We\r\nfurther acknowledge T. Adletzberger, J. Aguilera, T. Asenov, S. Bagiante, T. Menner, L. Shafeek, P. Taus, P. Traunmüller, and D. Waldhausl for their invaluable assistance. This research was supported by the Scientific Service Units of IST Austria through resources provided by the MIBA Machine Shop and the nanofabrication facility, by the FWF-P 32235 project, by the National Key R&D Program of China (2016YFA0301701, 2016YFA0300600), and by the European Union’s Horizon 2020 research and innovation program under grant agreement no. 862046. All data of this publication are available at 10.15479/AT:ISTA:7689.","oa":1,"quality_controlled":"1","publisher":"American Chemical Society","citation":{"ama":"Katsaros G, Kukucka J, Vukušić L, et al. Zero field splitting of heavy-hole states in quantum dots. Nano Letters. 2020;20(7):5201-5206. doi:10.1021/acs.nanolett.0c01466","apa":"Katsaros, G., Kukucka, J., Vukušić, L., Watzinger, H., Gao, F., Wang, T., … Held, K. (2020). Zero field splitting of heavy-hole states in quantum dots. Nano Letters. American Chemical Society. https://doi.org/10.1021/acs.nanolett.0c01466","short":"G. Katsaros, J. Kukucka, L. Vukušić, H. Watzinger, F. Gao, T. Wang, J.-J. Zhang, K. Held, Nano Letters 20 (2020) 5201–5206.","ieee":"G. Katsaros et al., “Zero field splitting of heavy-hole states in quantum dots,” Nano Letters, vol. 20, no. 7. American Chemical Society, pp. 5201–5206, 2020.","mla":"Katsaros, Georgios, et al. “Zero Field Splitting of Heavy-Hole States in Quantum Dots.” Nano Letters, vol. 20, no. 7, American Chemical Society, 2020, pp. 5201–06, doi:10.1021/acs.nanolett.0c01466.","ista":"Katsaros G, Kukucka J, Vukušić L, Watzinger H, Gao F, Wang T, Zhang J-J, Held K. 2020. Zero field splitting of heavy-hole states in quantum dots. Nano Letters. 20(7), 5201–5206.","chicago":"Katsaros, Georgios, Josip Kukucka, Lada Vukušić, Hannes Watzinger, Fei Gao, Ting Wang, Jian-Jun Zhang, and Karsten Held. “Zero Field Splitting of Heavy-Hole States in Quantum Dots.” Nano Letters. American Chemical Society, 2020. https://doi.org/10.1021/acs.nanolett.0c01466."},"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","external_id":{"isi":["000548893200066"],"pmid":["32479090"]},"article_processing_charge":"Yes (via OA deal)","author":[{"orcid":"0000-0001-8342-202X","full_name":"Katsaros, Georgios","last_name":"Katsaros","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","first_name":"Georgios"},{"first_name":"Josip","id":"3F5D8856-F248-11E8-B48F-1D18A9856A87","full_name":"Kukucka, Josip","last_name":"Kukucka"},{"first_name":"Lada","id":"31E9F056-F248-11E8-B48F-1D18A9856A87","last_name":"Vukušić","orcid":"0000-0003-2424-8636","full_name":"Vukušić, Lada"},{"last_name":"Watzinger","full_name":"Watzinger, Hannes","first_name":"Hannes","id":"35DF8E50-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Fei","full_name":"Gao, Fei","last_name":"Gao"},{"first_name":"Ting","full_name":"Wang, Ting","orcid":"0000-0002-4619-9575","last_name":"Wang"},{"full_name":"Zhang, Jian-Jun","last_name":"Zhang","first_name":"Jian-Jun"},{"full_name":"Held, Karsten","last_name":"Held","first_name":"Karsten"}],"title":"Zero field splitting of heavy-hole states in quantum dots","project":[{"call_identifier":"FWF","_id":"237B3DA4-32DE-11EA-91FC-C7463DDC885E","grant_number":"P32235","name":"Towards scalable hut wire quantum devices"},{"_id":"237E5020-32DE-11EA-91FC-C7463DDC885E","call_identifier":"H2020","grant_number":"862046","name":"TOPOLOGICALLY PROTECTED AND SCALABLE QUANTUM BITS"}],"publication_status":"published","publication_identifier":{"eissn":["1530-6992"],"issn":["1530-6984"]},"language":[{"iso":"eng"}],"file":[{"date_updated":"2020-08-06T09:35:37Z","file_size":3308906,"creator":"dernst","date_created":"2020-08-06T09:35:37Z","file_name":"2020_NanoLetters_Katsaros.pdf","content_type":"application/pdf","access_level":"open_access","relation":"main_file","file_id":"8204","success":1}],"ec_funded":1,"related_material":{"record":[{"relation":"research_data","status":"public","id":"7689"}]},"volume":20,"issue":"7","abstract":[{"text":"Using inelastic cotunneling spectroscopy we observe a zero field splitting within the spin triplet manifold of Ge hut wire quantum dots. The states with spin ±1 in the confinement direction are energetically favored by up to 55 μeV compared to the spin 0 triplet state because of the strong spin–orbit coupling. The reported effect should be observable in a broad class of strongly confined hole quantum-dot systems and might need to be considered when operating hole spin qubits.","lang":"eng"}],"acknowledged_ssus":[{"_id":"NanoFab"},{"_id":"M-Shop"}],"pmid":1,"oa_version":"Published Version","scopus_import":"1","intvolume":" 20","month":"06","date_updated":"2024-02-21T12:44:01Z","ddc":["530"],"file_date_updated":"2020-08-06T09:35:37Z","department":[{"_id":"GeKa"}],"_id":"8203","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"article_type":"original","type":"journal_article","status":"public"},{"scopus_import":"1","intvolume":" 9","month":"10","abstract":[{"text":"In vitro work revealed that excitatory synaptic inputs to hippocampal inhibitory interneurons could undergo Hebbian, associative, or non-associative plasticity. Both behavioral and learning-dependent reorganization of these connections has also been demonstrated by measuring spike transmission probabilities in pyramidal cell-interneuron spike cross-correlations that indicate monosynaptic connections. Here we investigated the activity-dependent modification of these connections during exploratory behavior in rats by optogenetically inhibiting pyramidal cell and interneuron subpopulations. Light application and associated firing alteration of pyramidal and interneuron populations led to lasting changes in pyramidal-interneuron connection weights as indicated by spike transmission changes. Spike transmission alterations were predicted by the light-mediated changes in the number of pre- and postsynaptic spike pairing events and by firing rate changes of interneurons but not pyramidal cells. This work demonstrates the presence of activity-dependent associative and non-associative reorganization of pyramidal-interneuron connections triggered by the optogenetic modification of the firing rate and spike synchrony of cells.","lang":"eng"}],"oa_version":"Published Version","related_material":{"record":[{"id":"8563","status":"public","relation":"research_data"}]},"volume":9,"publication_status":"published","publication_identifier":{"eissn":["2050084X"]},"language":[{"iso":"eng"}],"file":[{"access_level":"open_access","relation":"main_file","content_type":"application/pdf","checksum":"6a7b0543c440f4c000a1864e69377d95","file_id":"8749","success":1,"creator":"dernst","date_updated":"2020-11-09T09:17:40Z","file_size":447669,"date_created":"2020-11-09T09:17:40Z","file_name":"2020_eLife_Gridchyn.pdf"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"article_type":"original","type":"journal_article","status":"public","_id":"8740","department":[{"_id":"JoCs"}],"file_date_updated":"2020-11-09T09:17:40Z","date_updated":"2024-02-21T12:43:40Z","ddc":["570"],"oa":1,"publisher":"eLife Sciences Publications","quality_controlled":"1","acknowledgement":"We thank Michele Nardin and Federico Stella for comments on an earlier version of the manuscript. K Deisseroth for providing the pAAV-CaMKIIα::eNpHR3.0-YFP plasmid through Addgene. E Boyden for providing AAV2/1.CaMKII::ArchT.GFP.WPRE.SV40 plasmid through Penn Vector Core. This work was supported by the Austrian Science Fund (I02072 and I03713) and a Swiss National Science Foundation grant to PS. The authors declare no conflicts of interest.","date_created":"2020-11-08T23:01:25Z","date_published":"2020-10-05T00:00:00Z","doi":"10.7554/eLife.61106","year":"2020","has_accepted_license":"1","isi":1,"publication":"eLife","day":"05","project":[{"name":"Interneuron plasticity during spatial learning","grant_number":"I2072-B27","_id":"257D4372-B435-11E9-9278-68D0E5697425","call_identifier":"FWF"},{"call_identifier":"FWF","_id":"2654F984-B435-11E9-9278-68D0E5697425","name":"Interneuro Plasticity During Spatial Learning","grant_number":"I03713"}],"article_number":"61106","article_processing_charge":"No","external_id":{"isi":["000584369000001"]},"author":[{"orcid":"0000-0002-1807-1929","full_name":"Gridchyn, Igor","last_name":"Gridchyn","id":"4B60654C-F248-11E8-B48F-1D18A9856A87","first_name":"Igor"},{"first_name":"Philipp","id":"3B9D816C-F248-11E8-B48F-1D18A9856A87","full_name":"Schönenberger, Philipp","last_name":"Schönenberger"},{"full_name":"O'Neill, Joseph","last_name":"O'Neill","id":"426376DC-F248-11E8-B48F-1D18A9856A87","first_name":"Joseph"},{"id":"3FA14672-F248-11E8-B48F-1D18A9856A87","first_name":"Jozsef L","full_name":"Csicsvari, Jozsef L","orcid":"0000-0002-5193-4036","last_name":"Csicsvari"}],"title":"Optogenetic inhibition-mediated activity-dependent modification of CA1 pyramidal-interneuron connections during behavior","citation":{"mla":"Gridchyn, Igor, et al. “Optogenetic Inhibition-Mediated Activity-Dependent Modification of CA1 Pyramidal-Interneuron Connections during Behavior.” ELife, vol. 9, 61106, eLife Sciences Publications, 2020, doi:10.7554/eLife.61106.","ieee":"I. 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Optogenetic inhibition-mediated activity-dependent modification of CA1 pyramidal-interneuron connections during behavior. eLife. 2020;9. doi:10.7554/eLife.61106","chicago":"Gridchyn, Igor, Philipp Schönenberger, Joseph O’Neill, and Jozsef L Csicsvari. “Optogenetic Inhibition-Mediated Activity-Dependent Modification of CA1 Pyramidal-Interneuron Connections during Behavior.” ELife. eLife Sciences Publications, 2020. https://doi.org/10.7554/eLife.61106.","ista":"Gridchyn I, Schönenberger P, O’Neill J, Csicsvari JL. 2020. Optogenetic inhibition-mediated activity-dependent modification of CA1 pyramidal-interneuron connections during behavior. eLife. 9, 61106."},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8"},{"oa_version":"Published Version","abstract":[{"lang":"eng","text":"Supplementary movies showing the following sequences for spatio-temporarily programmed shells: input geometry and actuation time landscape; comparison of morphing processes from a camera recording and a simulation; final actuated shape."}],"month":"09","oa":1,"publisher":"Institute of Science and Technology Austria","file":[{"relation":"main_file","access_level":"open_access","content_type":"video/mp4","success":1,"file_id":"8376","checksum":"4029ffd65fb82ef2366b2fc2a4908e16","creator":"rguseino","file_size":29214988,"date_updated":"2020-09-11T09:45:21Z","file_name":"supplementary_movie_1.mp4","date_created":"2020-09-11T09:45:21Z"},{"date_updated":"2020-09-11T09:45:25Z","file_size":28449475,"creator":"rguseino","date_created":"2020-09-11T09:45:25Z","file_name":"supplementary_movie_2.mp4","content_type":"video/mp4","access_level":"open_access","relation":"main_file","checksum":"8ed03b04d80f1a4e622cb22e6100afd8","file_id":"8377","success":1},{"date_created":"2020-09-11T09:45:28Z","file_name":"supplementary_movie_3.mp4","date_updated":"2020-09-11T09:45:28Z","file_size":26315853,"creator":"rguseino","checksum":"ad6864afb5e694e5c52a88fba4e02eea","file_id":"8378","success":1,"content_type":"video/mp4","access_level":"open_access","relation":"main_file"},{"creator":"rguseino","date_updated":"2020-09-11T09:45:33Z","file_size":25198755,"date_created":"2020-09-11T09:45:33Z","file_name":"supplementary_movie_4.mp4","access_level":"open_access","relation":"main_file","content_type":"video/mp4","checksum":"b079cef7871fe1afb69af0e2b099f3b1","file_id":"8379","success":1},{"success":1,"checksum":"9d1d48a8ed5c109a999c51b044ee523d","file_id":"8380","relation":"main_file","access_level":"open_access","content_type":"video/mp4","file_name":"supplementary_movie_5.mp4","date_created":"2020-09-11T09:45:36Z","creator":"rguseino","file_size":29011354,"date_updated":"2020-09-11T09:45:36Z"},{"date_created":"2020-09-11T09:52:36Z","file_name":"readme.txt","date_updated":"2020-09-11T09:52:36Z","file_size":586,"creator":"rguseino","checksum":"d414d0059e982d752d218756b3c3ce05","file_id":"8381","success":1,"content_type":"text/plain","access_level":"open_access","relation":"main_file"}],"day":"21","year":"2020","has_accepted_license":"1","contributor":[{"contributor_type":"researcher","first_name":"Ruslan","id":"3AB45EE2-F248-11E8-B48F-1D18A9856A87","last_name":"Guseinov","orcid":"0000-0001-9819-5077"},{"contributor_type":"researcher","first_name":"Connor","last_name":"McMahan"},{"contributor_type":"researcher","id":"2DC83906-F248-11E8-B48F-1D18A9856A87","first_name":"Jesus","last_name":"Perez Rodriguez"},{"last_name":"Daraio","contributor_type":"researcher","first_name":"Chiara"},{"first_name":"Bernd","contributor_type":"researcher","id":"49876194-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6511-9385","last_name":"Bickel"}],"ec_funded":1,"date_created":"2020-09-11T09:52:54Z","related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"8366"}]},"doi":"10.15479/AT:ISTA:8375","date_published":"2020-09-21T00:00:00Z","_id":"8375","status":"public","project":[{"_id":"24F9549A-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and Modeling","grant_number":"715767"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"type":"research_data","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["000"],"date_updated":"2024-02-21T12:44:29Z","citation":{"short":"R. 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Supplementary Data for “Zero Field Splitting of Heavy-Hole States in Quantum Dots.” Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:7689.","ama":"Katsaros G. Supplementary data for “Zero field splitting of heavy-hole states in quantum dots.” 2020. doi:10.15479/AT:ISTA:7689","apa":"Katsaros, G. (2020). Supplementary data for “Zero field splitting of heavy-hole states in quantum dots.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:7689","short":"G. Katsaros, (2020).","ieee":"G. Katsaros, “Supplementary data for ‘Zero field splitting of heavy-hole states in quantum dots.’” Institute of Science and Technology Austria, 2020.","chicago":"Katsaros, Georgios. “Supplementary Data for ‘Zero Field Splitting of Heavy-Hole States in Quantum Dots.’” Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:7689.","ista":"Katsaros G. 2020. Supplementary data for ‘Zero field splitting of heavy-hole states in quantum dots’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:7689."},"month":"05","oa":1,"publisher":"Institute of Science and Technology Austria","oa_version":"Published Version","abstract":[{"text":"These are the supplementary research data to the publication \"Zero field splitting of heavy-hole states in quantum dots\". All matrix files have the same format. Within each column the bias voltage is changed. Each column corresponds to either a different gate voltage or magnetic field. The voltage values are given in mV, the current values in pA. 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Guseinov, “Supplementary data for ‘Computational design of cold bent glass façades.’” Institute of Science and Technology Austria, 2020.","short":"R. Guseinov, (2020).","ama":"Guseinov R. Supplementary data for “Computational design of cold bent glass façades.” 2020. doi:10.15479/AT:ISTA:8761","apa":"Guseinov, R. (2020). Supplementary data for “Computational design of cold bent glass façades.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:8761","mla":"Guseinov, Ruslan. Supplementary Data for “Computational Design of Cold Bent Glass Façades.” Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:8761.","ista":"Guseinov R. 2020. 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Science and Technology Austria","oa":1,"month":"10","abstract":[{"text":"Supplementary data provided for the provided for the publication:\r\nIgor Gridchyn , Philipp Schoenenberger , Joseph O'Neill , Jozsef Csicsvari (2020) Optogenetic inhibition-mediated activity-dependent modification of CA1 pyramidal-interneuron connections during behavior. Elife.","lang":"eng"}],"oa_version":"Published Version","author":[{"last_name":"Csicsvari","orcid":"0000-0002-5193-4036","full_name":"Csicsvari, Jozsef L","id":"3FA14672-F248-11E8-B48F-1D18A9856A87","first_name":"Jozsef L"},{"id":"4B60654C-F248-11E8-B48F-1D18A9856A87","first_name":"Igor","full_name":"Gridchyn, Igor","orcid":"0000-0002-1807-1929","last_name":"Gridchyn"},{"full_name":"Schönenberger, Philipp","last_name":"Schönenberger","first_name":"Philipp","id":"3B9D816C-F248-11E8-B48F-1D18A9856A87"}],"article_processing_charge":"No","title":"Optogenetic alteration of hippocampal network activity","department":[{"_id":"JoCs"}],"file_date_updated":"2020-10-19T10:12:29Z","citation":{"chicago":"Csicsvari, Jozsef L, Igor Gridchyn, and Philipp Schönenberger. “Optogenetic Alteration of Hippocampal Network Activity.” Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:8563.","ista":"Csicsvari JL, Gridchyn I, Schönenberger P. 2020. 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Optogenetic alteration of hippocampal network activity. 2020. doi:10.15479/AT:ISTA:8563"},"date_updated":"2024-02-21T12:43:41Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["570"],"type":"research_data","tmp":{"short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png"},"status":"public","_id":"8563"},{"oa_version":"Published Version","abstract":[{"text":"Advances in shape-morphing materials, such as hydrogels, shape-memory polymers and light-responsive polymers have enabled prescribing self-directed deformations of initially flat geometries. However, most proposed solutions evolve towards a target geometry without considering time-dependent actuation paths. To achieve more complex geometries and avoid self-collisions, it is critical to encode a spatial and temporal shape evolution within the initially flat shell. Recent realizations of time-dependent morphing are limited to the actuation of few, discrete hinges and cannot form doubly curved surfaces. Here, we demonstrate a method for encoding temporal shape evolution in architected shells that assume complex shapes and doubly curved geometries. The shells are non-periodic tessellations of pre-stressed contractile unit cells that soften in water at rates prescribed locally by mesostructure geometry. The ensuing midplane contraction is coupled to the formation of encoded curvatures. We propose an inverse design tool based on a data-driven model for unit cells’ temporal responses.","lang":"eng"}],"month":"01","intvolume":" 11","scopus_import":"1","file":[{"creator":"rguseino","date_updated":"2020-07-14T12:47:55Z","file_size":1315270,"date_created":"2020-01-15T14:35:34Z","file_name":"2020_NatureComm_Guseinov.pdf","access_level":"open_access","relation":"main_file","content_type":"application/pdf","file_id":"7336","checksum":"7db23fef2f4cda712f17f1004116ddff"}],"language":[{"iso":"eng"}],"publication_identifier":{"issn":["2041-1723"]},"publication_status":"published","volume":11,"related_material":{"link":[{"description":"News on IST Homepage","relation":"press_release","url":"https://ist.ac.at/en/news/geometry-meets-time/"}],"record":[{"status":"public","id":"8366","relation":"dissertation_contains"},{"status":"public","id":"7154","relation":"research_data"}]},"ec_funded":1,"_id":"7262","status":"public","keyword":["Design","Synthesis and processing","Mechanical engineering","Polymers"],"article_type":"original","type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"ddc":["000"],"date_updated":"2024-02-21T12:45:02Z","file_date_updated":"2020-07-14T12:47:55Z","department":[{"_id":"BeBi"}],"publisher":"Springer Nature","quality_controlled":"1","oa":1,"day":"13","publication":"Nature Communications","has_accepted_license":"1","isi":1,"year":"2020","doi":"10.1038/s41467-019-14015-2","date_published":"2020-01-13T00:00:00Z","date_created":"2020-01-13T16:54:26Z","article_number":"237","project":[{"name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425"},{"_id":"24F9549A-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and Modeling","grant_number":"715767"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","citation":{"mla":"Guseinov, Ruslan, et al. “Programming Temporal Morphing of Self-Actuated Shells.” Nature Communications, vol. 11, 237, Springer Nature, 2020, doi:10.1038/s41467-019-14015-2.","ieee":"R. Guseinov, C. McMahan, J. Perez Rodriguez, C. Daraio, and B. Bickel, “Programming temporal morphing of self-actuated shells,” Nature Communications, vol. 11. Springer Nature, 2020.","short":"R. Guseinov, C. McMahan, J. Perez Rodriguez, C. Daraio, B. Bickel, Nature Communications 11 (2020).","apa":"Guseinov, R., McMahan, C., Perez Rodriguez, J., Daraio, C., & Bickel, B. (2020). Programming temporal morphing of self-actuated shells. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-019-14015-2","ama":"Guseinov R, McMahan C, Perez Rodriguez J, Daraio C, Bickel B. Programming temporal morphing of self-actuated shells. Nature Communications. 2020;11. doi:10.1038/s41467-019-14015-2","chicago":"Guseinov, Ruslan, Connor McMahan, Jesus Perez Rodriguez, Chiara Daraio, and Bernd Bickel. “Programming Temporal Morphing of Self-Actuated Shells.” Nature Communications. Springer Nature, 2020. https://doi.org/10.1038/s41467-019-14015-2.","ista":"Guseinov R, McMahan C, Perez Rodriguez J, Daraio C, Bickel B. 2020. Programming temporal morphing of self-actuated shells. Nature Communications. 11, 237."},"title":"Programming temporal morphing of self-actuated shells","author":[{"id":"3AB45EE2-F248-11E8-B48F-1D18A9856A87","first_name":"Ruslan","full_name":"Guseinov, Ruslan","orcid":"0000-0001-9819-5077","last_name":"Guseinov"},{"last_name":"McMahan","full_name":"McMahan, Connor","first_name":"Connor"},{"full_name":"Perez Rodriguez, Jesus","last_name":"Perez Rodriguez","id":"2DC83906-F248-11E8-B48F-1D18A9856A87","first_name":"Jesus"},{"last_name":"Daraio","full_name":"Daraio, Chiara","first_name":"Chiara"},{"last_name":"Bickel","full_name":"Bickel, Bernd","orcid":"0000-0001-6511-9385","id":"49876194-F248-11E8-B48F-1D18A9856A87","first_name":"Bernd"}],"external_id":{"isi":["000511916800015"]},"article_processing_charge":"No"},{"file_date_updated":"2023-12-01T10:39:59Z","title":"STL-files for 3D-printed grid holders described in Fäßler F, Zens B, et al.; 3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy","department":[{"_id":"FlSc"}],"article_processing_charge":"No","author":[{"last_name":"Schur","full_name":"Schur, Florian KM","orcid":"0000-0003-4790-8078","first_name":"Florian KM","id":"48AD8942-F248-11E8-B48F-1D18A9856A87"}],"ddc":["570"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ista":"Schur FK. 2020. STL-files for 3D-printed grid holders described in Fäßler F, Zens B, et al.; 3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy, Institute of Science and Technology Austria, 10.15479/AT:ISTA:14592.","chicago":"Schur, Florian KM. “STL-Files for 3D-Printed Grid Holders Described in Fäßler F, Zens B, et Al.; 3D Printed Cell Culture Grid Holders for Improved Cellular Specimen Preparation in Cryo-Electron Microscopy.” Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:14592.","ama":"Schur FK. STL-files for 3D-printed grid holders described in Fäßler F, Zens B, et al.; 3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy. 2020. doi:10.15479/AT:ISTA:14592","apa":"Schur, F. K. (2020). STL-files for 3D-printed grid holders described in Fäßler F, Zens B, et al.; 3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:14592","short":"F.K. Schur, (2020).","ieee":"F. K. Schur, “STL-files for 3D-printed grid holders described in Fäßler F, Zens B, et al.; 3D printed cell culture grid holders for improved cellular specimen preparation in cryo-electron microscopy.” Institute of Science and Technology Austria, 2020.","mla":"Schur, Florian KM. STL-Files for 3D-Printed Grid Holders Described in Fäßler F, Zens B, et Al.; 3D Printed Cell Culture Grid Holders for Improved Cellular Specimen Preparation in Cryo-Electron Microscopy. Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:14592."},"date_updated":"2024-02-21T12:44:48Z","project":[{"grant_number":"P33367","name":"Structure and isoform diversity of the Arp2/3 complex","_id":"9B954C5C-BA93-11EA-9121-9846C619BF3A"}],"status":"public","tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","image":"/images/cc_by_nc_sa.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","short":"CC BY-NC-SA (4.0)"},"type":"research_data","_id":"14592","contributor":[{"last_name":"Fäßler","orcid":"0000-0001-7149-769X","contributor_type":"researcher","first_name":"Florian","id":"404F5528-F248-11E8-B48F-1D18A9856A87"},{"id":"45FD126C-F248-11E8-B48F-1D18A9856A87","contributor_type":"researcher","first_name":"Bettina","last_name":"Zens"},{"last_name":"Hauschild","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87","contributor_type":"researcher","first_name":"Robert"},{"last_name":"Schur","orcid":"0000-0003-4790-8078","contributor_type":"researcher","id":"48AD8942-F248-11E8-B48F-1D18A9856A87","first_name":"Florian KM"}],"date_created":"2023-11-22T15:00:57Z","related_material":{"record":[{"status":"public","id":"8586","relation":"research_data"}]},"date_published":"2020-12-01T00:00:00Z","doi":"10.15479/AT:ISTA:14592","file":[{"date_created":"2023-11-22T14:58:44Z","file_name":"3Dprint-files_download_v2.zip","creator":"fschur","date_updated":"2023-11-22T14:58:44Z","file_size":49297,"checksum":"0108616e2a59e51879ea51299a29b091","file_id":"14593","success":1,"access_level":"open_access","relation":"main_file","content_type":"application/zip"},{"date_created":"2023-12-01T10:39:59Z","file_name":"readme.txt","date_updated":"2023-12-01T10:39:59Z","file_size":641,"creator":"cchlebak","checksum":"4c66ddedee4d01c1c4a7978208350cfc","file_id":"14637","success":1,"content_type":"text/plain","access_level":"open_access","relation":"main_file"}],"day":"01","year":"2020","has_accepted_license":"1","month":"12","oa":1,"publisher":"Institute of Science and Technology Austria","oa_version":"Published Version","abstract":[{"lang":"eng","text":"Cryo-electron microscopy (cryo-EM) of cellular specimens provides insights into biological processes and structures within a native context. However, a major challenge still lies in the efficient and reproducible preparation of adherent cells for subsequent cryo-EM analysis. This is due to the sensitivity of many cellular specimens to the varying seeding and culturing conditions required for EM experiments, the often limited amount of cellular material and also the fragility of EM grids and their substrate. Here, we present low-cost and reusable 3D printed grid holders, designed to improve specimen preparation when culturing challenging cellular samples directly on grids. The described grid holders increase cell culture reproducibility and throughput, and reduce the resources required for cell culturing. We show that grid holders can be integrated into various cryo-EM workflows, including micro-patterning approaches to control cell seeding on grids, and for generating samples for cryo-focused ion beam milling and cryo-electron tomography experiments. Their adaptable design allows for the generation of specialized grid holders customized to a large variety of applications."}]},{"_id":"7213","status":"public","conference":{"name":"COMPLEX: International Conference on Complex Networks and their Applications","start_date":"2019-12-10","end_date":"2019-12-12","location":"Lisbon, Portugal"},"type":"conference","ddc":["004"],"date_updated":"2024-02-22T13:16:06Z","department":[{"_id":"DaAl"}],"file_date_updated":"2020-10-08T08:16:48Z","oa_version":"Submitted Version","abstract":[{"lang":"eng","text":"Persistent homology is a powerful tool in Topological Data Analysis (TDA) to capture the topological properties of data succinctly at different spatial resolutions. For graphical data, the shape, and structure of the neighborhood of individual data items (nodes) are an essential means of characterizing their properties. We propose the use of persistent homology methods to capture structural and topological properties of graphs and use it to address the problem of link prediction. We achieve encouraging results on nine different real-world datasets that attest to the potential of persistent homology-based methods for network analysis."}],"intvolume":" 881","month":"01","alternative_title":["SCI"],"scopus_import":"1","language":[{"iso":"eng"}],"file":[{"success":1,"checksum":"8951f094c8c7dae9ff8db885199bc296","file_id":"8625","relation":"main_file","access_level":"open_access","content_type":"application/pdf","file_name":"main.pdf","date_created":"2020-10-08T08:16:48Z","creator":"bchatter","file_size":310598,"date_updated":"2020-10-08T08:16:48Z"}],"publication_status":"published","publication_identifier":{"issn":["1860949X"],"isbn":["9783030366865"],"eissn":["18609503"]},"ec_funded":1,"volume":881,"project":[{"name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425"}],"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","citation":{"apa":"Bhatia, S., Chatterjee, B., Nathani, D., & Kaul, M. (2020). A persistent homology perspective to the link prediction problem. In Complex Networks and their applications VIII (Vol. 881, pp. 27–39). Lisbon, Portugal: Springer Nature. https://doi.org/10.1007/978-3-030-36687-2_3","ama":"Bhatia S, Chatterjee B, Nathani D, Kaul M. A persistent homology perspective to the link prediction problem. In: Complex Networks and Their Applications VIII. Vol 881. Springer Nature; 2020:27-39. doi:10.1007/978-3-030-36687-2_3","ieee":"S. Bhatia, B. Chatterjee, D. Nathani, and M. Kaul, “A persistent homology perspective to the link prediction problem,” in Complex Networks and their applications VIII, Lisbon, Portugal, 2020, vol. 881, pp. 27–39.","short":"S. Bhatia, B. Chatterjee, D. Nathani, M. Kaul, in:, Complex Networks and Their Applications VIII, Springer Nature, 2020, pp. 27–39.","mla":"Bhatia, Sumit, et al. “A Persistent Homology Perspective to the Link Prediction Problem.” Complex Networks and Their Applications VIII, vol. 881, Springer Nature, 2020, pp. 27–39, doi:10.1007/978-3-030-36687-2_3.","ista":"Bhatia S, Chatterjee B, Nathani D, Kaul M. 2020. A persistent homology perspective to the link prediction problem. Complex Networks and their applications VIII. COMPLEX: International Conference on Complex Networks and their Applications, SCI, vol. 881, 27–39.","chicago":"Bhatia, Sumit, Bapi Chatterjee, Deepak Nathani, and Manohar Kaul. “A Persistent Homology Perspective to the Link Prediction Problem.” In Complex Networks and Their Applications VIII, 881:27–39. Springer Nature, 2020. https://doi.org/10.1007/978-3-030-36687-2_3."},"title":"A persistent homology perspective to the link prediction problem","article_processing_charge":"No","external_id":{"isi":["000843927300003"]},"author":[{"first_name":"Sumit","full_name":"Bhatia, Sumit","last_name":"Bhatia"},{"id":"3C41A08A-F248-11E8-B48F-1D18A9856A87","first_name":"Bapi","last_name":"Chatterjee","full_name":"Chatterjee, Bapi","orcid":"0000-0002-2742-4028"},{"full_name":"Nathani, Deepak","last_name":"Nathani","first_name":"Deepak"},{"first_name":"Manohar","full_name":"Kaul, Manohar","last_name":"Kaul"}],"oa":1,"publisher":"Springer Nature","quality_controlled":"1","publication":"Complex Networks and their applications VIII","day":"01","year":"2020","isi":1,"has_accepted_license":"1","date_created":"2019-12-29T23:00:45Z","date_published":"2020-01-01T00:00:00Z","doi":"10.1007/978-3-030-36687-2_3","page":"27-39"},{"language":[{"iso":"eng"}],"publication_status":"published","publication_identifier":{"isbn":["978-1-4503-7089-9"]},"month":"10","main_file_link":[{"open_access":"1","url":"https://eprint.iacr.org/2019/1015"}],"scopus_import":"1","oa_version":"Preprint","abstract":[{"lang":"eng","text":"In this paper, we present the first Asynchronous Distributed Key Generation (ADKG) algorithm which is also the first distributed key generation algorithm that can generate cryptographic keys with a dual (f,2f+1)-threshold (where f is the number of faulty parties). As a result, using our ADKG we remove the trusted setup assumption that the most scalable consensus algorithms make. In order to create a DKG with a dual (f,2f+1)- threshold we first answer in the affirmative the open question posed by Cachin et al. [7] on how to create an Asynchronous Verifiable Secret Sharing (AVSS) protocol with a reconstruction threshold of f+1Proceedings of the 2020 ACM SIGSAC Conference on Computer and Communications Security, Association for Computing Machinery, 2020, pp. 1751–1767, doi:10.1145/3372297.3423364.","ieee":"E. Kokoris Kogias, D. Malkhi, and A. Spiegelman, “Asynchronous distributed key generation for computationally-secure randomness, consensus, and threshold signatures,” in Proceedings of the 2020 ACM SIGSAC Conference on Computer and Communications Security, Virtual, United States, 2020, pp. 1751–1767.","short":"E. Kokoris Kogias, D. Malkhi, A. Spiegelman, in:, Proceedings of the 2020 ACM SIGSAC Conference on Computer and Communications Security, Association for Computing Machinery, 2020, pp. 1751–1767.","apa":"Kokoris Kogias, E., Malkhi, D., & Spiegelman, A. (2020). Asynchronous distributed key generation for computationally-secure randomness, consensus, and threshold signatures. In Proceedings of the 2020 ACM SIGSAC Conference on Computer and Communications Security (pp. 1751–1767). Virtual, United States: Association for Computing Machinery. https://doi.org/10.1145/3372297.3423364","ama":"Kokoris Kogias E, Malkhi D, Spiegelman A. Asynchronous distributed key generation for computationally-secure randomness, consensus, and threshold signatures. In: Proceedings of the 2020 ACM SIGSAC Conference on Computer and Communications Security. Association for Computing Machinery; 2020:1751–1767. doi:10.1145/3372297.3423364","chicago":"Kokoris Kogias, Eleftherios, Dahlia Malkhi, and Alexander Spiegelman. “Asynchronous Distributed Key Generation for Computationally-Secure Randomness, Consensus, and Threshold Signatures.” In Proceedings of the 2020 ACM SIGSAC Conference on Computer and Communications Security, 1751–1767. Association for Computing Machinery, 2020. https://doi.org/10.1145/3372297.3423364.","ista":"Kokoris Kogias E, Malkhi D, Spiegelman A. 2020. Asynchronous distributed key generation for computationally-secure randomness, consensus, and threshold signatures. Proceedings of the 2020 ACM SIGSAC Conference on Computer and Communications Security. CCS: Computer and Communications Security, 1751–1767."}},{"year":"2020","has_accepted_license":"1","isi":1,"publication":"2020 IEEE Real-Time Systems Symposium","day":"01","page":"244-256","date_created":"2021-02-26T16:38:24Z","doi":"10.1109/RTSS49844.2020.00031","date_published":"2020-12-01T00:00:00Z","acknowledgement":"Miriam Garc´ıa Soto was partially supported by the Austrian Science Fund (FWF) under grant Z211-N23 (Wittgenstein Award). Pavithra Prabhakar was partially supported by NSF CAREER Award No. 1552668, NSF Award No. 2008957 and ONR YIP Award No. N000141712577.","oa":1,"publisher":"IEEE","quality_controlled":"1","citation":{"chicago":"Garcia Soto, Miriam, and Pavithra Prabhakar. “Hybridization for Stability Verification of Nonlinear Switched Systems.” In 2020 IEEE Real-Time Systems Symposium, 244–56. IEEE, 2020. https://doi.org/10.1109/RTSS49844.2020.00031.","ista":"Garcia Soto M, Prabhakar P. 2020. Hybridization for stability verification of nonlinear switched systems. 2020 IEEE Real-Time Systems Symposium. RTTS: Real-Time Systems Symposium, 244–256.","mla":"Garcia Soto, Miriam, and Pavithra Prabhakar. “Hybridization for Stability Verification of Nonlinear Switched Systems.” 2020 IEEE Real-Time Systems Symposium, IEEE, 2020, pp. 244–56, doi:10.1109/RTSS49844.2020.00031.","short":"M. Garcia Soto, P. Prabhakar, in:, 2020 IEEE Real-Time Systems Symposium, IEEE, 2020, pp. 244–256.","ieee":"M. Garcia Soto and P. Prabhakar, “Hybridization for stability verification of nonlinear switched systems,” in 2020 IEEE Real-Time Systems Symposium, Houston, TX, USA , 2020, pp. 244–256.","apa":"Garcia Soto, M., & Prabhakar, P. (2020). Hybridization for stability verification of nonlinear switched systems. In 2020 IEEE Real-Time Systems Symposium (pp. 244–256). Houston, TX, USA : IEEE. https://doi.org/10.1109/RTSS49844.2020.00031","ama":"Garcia Soto M, Prabhakar P. Hybridization for stability verification of nonlinear switched systems. In: 2020 IEEE Real-Time Systems Symposium. IEEE; 2020:244-256. doi:10.1109/RTSS49844.2020.00031"},"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","external_id":{"isi":["000680435100021"]},"author":[{"last_name":"Garcia Soto","full_name":"Garcia Soto, Miriam","orcid":"0000-0003-2936-5719","first_name":"Miriam","id":"4B3207F6-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Pavithra","full_name":"Prabhakar, Pavithra","last_name":"Prabhakar"}],"title":"Hybridization for stability verification of nonlinear switched systems","project":[{"name":"The Wittgenstein Prize","grant_number":"Z211","call_identifier":"FWF","_id":"25F42A32-B435-11E9-9278-68D0E5697425"}],"publication_status":"published","publication_identifier":{"eissn":["2576-3172"],"eisbn":["9781728183244"]},"language":[{"iso":"eng"}],"file":[{"date_created":"2021-02-26T16:38:14Z","file_name":"main.pdf","creator":"mgarcias","date_updated":"2021-02-26T16:38:14Z","file_size":1125794,"checksum":"8f97f229316c3b3a6f0cf99297aa0941","file_id":"9203","access_level":"open_access","relation":"main_file","content_type":"application/pdf"}],"abstract":[{"text":"We propose a novel hybridization method for stability analysis that over-approximates nonlinear dynamical systems by switched systems with linear inclusion dynamics. We observe that existing hybridization techniques for safety analysis that over-approximate nonlinear dynamical systems by switched affine inclusion dynamics and provide fixed approximation error, do not suffice for stability analysis. Hence, we propose a hybridization method that provides a state-dependent error which converges to zero as the state tends to the equilibrium point. The crux of our hybridization computation is an elegant recursive algorithm that uses partial derivatives of a given function to obtain upper and lower bound matrices for the over-approximating linear inclusion. We illustrate our method on some examples to demonstrate the application of the theory for stability analysis. In particular, our method is able to establish stability of a nonlinear system which does not admit a polynomial Lyapunov function.","lang":"eng"}],"oa_version":"Submitted Version","month":"12","date_updated":"2024-02-22T13:25:19Z","ddc":["000"],"file_date_updated":"2021-02-26T16:38:14Z","department":[{"_id":"ToHe"}],"_id":"9202","conference":{"name":"RTTS: Real-Time Systems Symposium","location":"Houston, TX, USA ","end_date":"2020-12-04","start_date":"2020-12-01"},"type":"conference","status":"public"},{"quality_controlled":"1","publisher":"Springer","oa":1,"acknowledgement":"We would like to thank P. T. Nam and R. Seiringer for several useful discussions and\r\nfor suggesting us to use the localization techniques from [9]. C. Boccato has received funding from the\r\nEuropean Research Council (ERC) under the programme Horizon 2020 (Grant Agreement 694227). B. Schlein gratefully acknowledges support from the NCCR SwissMAP and from the Swiss National Foundation of Science (Grant No. 200020_1726230) through the SNF Grant “Dynamical and energetic properties of Bose–Einstein condensates”.","doi":"10.1007/s00220-019-03555-9","date_published":"2020-06-01T00:00:00Z","date_created":"2019-09-24T17:30:59Z","page":"1311-1395","day":"01","publication":"Communications in Mathematical Physics","isi":1,"year":"2020","project":[{"_id":"25C6DC12-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"Analysis of quantum many-body systems","grant_number":"694227"}],"title":"Optimal rate for Bose-Einstein condensation in the Gross-Pitaevskii regime","author":[{"first_name":"Chiara","id":"342E7E22-F248-11E8-B48F-1D18A9856A87","last_name":"Boccato","full_name":"Boccato, Chiara"},{"full_name":"Brennecke, Christian","last_name":"Brennecke","first_name":"Christian"},{"first_name":"Serena","last_name":"Cenatiempo","full_name":"Cenatiempo, Serena"},{"full_name":"Schlein, Benjamin","last_name":"Schlein","first_name":"Benjamin"}],"external_id":{"isi":["000536053300012"],"arxiv":["1812.03086"]},"article_processing_charge":"No","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","citation":{"mla":"Boccato, Chiara, et al. “Optimal Rate for Bose-Einstein Condensation in the Gross-Pitaevskii Regime.” Communications in Mathematical Physics, vol. 376, Springer, 2020, pp. 1311–95, doi:10.1007/s00220-019-03555-9.","apa":"Boccato, C., Brennecke, C., Cenatiempo, S., & Schlein, B. (2020). Optimal rate for Bose-Einstein condensation in the Gross-Pitaevskii regime. Communications in Mathematical Physics. Springer. https://doi.org/10.1007/s00220-019-03555-9","ama":"Boccato C, Brennecke C, Cenatiempo S, Schlein B. Optimal rate for Bose-Einstein condensation in the Gross-Pitaevskii regime. Communications in Mathematical Physics. 2020;376:1311-1395. doi:10.1007/s00220-019-03555-9","ieee":"C. Boccato, C. Brennecke, S. Cenatiempo, and B. Schlein, “Optimal rate for Bose-Einstein condensation in the Gross-Pitaevskii regime,” Communications in Mathematical Physics, vol. 376. Springer, pp. 1311–1395, 2020.","short":"C. Boccato, C. Brennecke, S. Cenatiempo, B. Schlein, Communications in Mathematical Physics 376 (2020) 1311–1395.","chicago":"Boccato, Chiara, Christian Brennecke, Serena Cenatiempo, and Benjamin Schlein. “Optimal Rate for Bose-Einstein Condensation in the Gross-Pitaevskii Regime.” Communications in Mathematical Physics. Springer, 2020. https://doi.org/10.1007/s00220-019-03555-9.","ista":"Boccato C, Brennecke C, Cenatiempo S, Schlein B. 2020. Optimal rate for Bose-Einstein condensation in the Gross-Pitaevskii regime. Communications in Mathematical Physics. 376, 1311–1395."},"month":"06","intvolume":" 376","scopus_import":"1","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1812.03086"}],"oa_version":"Preprint","abstract":[{"text":"We consider systems of bosons trapped in a box, in the Gross–Pitaevskii regime. We show that low-energy states exhibit complete Bose–Einstein condensation with an optimal bound on the number of orthogonal excitations. This extends recent results obtained in Boccato et al. (Commun Math Phys 359(3):975–1026, 2018), removing the assumption of small interaction potential.","lang":"eng"}],"volume":376,"ec_funded":1,"language":[{"iso":"eng"}],"publication_identifier":{"issn":["0010-3616"],"eissn":["1432-0916"]},"publication_status":"published","status":"public","type":"journal_article","article_type":"original","_id":"6906","department":[{"_id":"RoSe"}],"date_updated":"2024-02-22T13:33:02Z"}]