[{"doi":"10.1371/journal.pone.0080814","language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"project":[{"call_identifier":"FP7","name":"Quantitative Graph Games: Theory and Applications","grant_number":"279307","_id":"2581B60A-B435-11E9-9278-68D0E5697425"},{"name":"Rigorous Systems Engineering","call_identifier":"FWF","grant_number":"S 11407_N23","_id":"25832EC2-B435-11E9-9278-68D0E5697425"},{"_id":"2584A770-B435-11E9-9278-68D0E5697425","grant_number":"P 23499-N23","name":"Modern Graph Algorithmic Techniques in Formal Verification","call_identifier":"FWF"},{"_id":"2587B514-B435-11E9-9278-68D0E5697425","name":"Microsoft Research Faculty Fellowship"}],"quality_controlled":"1","month":"12","related_material":{"record":[{"relation":"research_data","status":"public","id":"9749"},{"id":"1400","relation":"dissertation_contains","status":"public"}]},"author":[{"full_name":"Zagorsky, Benjamin","first_name":"Benjamin","last_name":"Zagorsky"},{"full_name":"Reiter, Johannes","first_name":"Johannes","last_name":"Reiter","id":"4A918E98-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0170-7353"},{"full_name":"Chatterjee, Krishnendu","last_name":"Chatterjee","first_name":"Krishnendu","orcid":"0000-0002-4561-241X","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Nowak","first_name":"Martin","full_name":"Nowak, Martin"}],"volume":8,"date_created":"2018-12-11T11:56:33Z","date_updated":"2023-09-07T11:40:43Z","year":"2013","department":[{"_id":"KrCh"}],"publisher":"Public Library of Science","publication_status":"published","ec_funded":1,"publist_id":"4702","file_date_updated":"2020-07-14T12:45:34Z","article_number":"e80814","date_published":"2013-12-12T00:00:00Z","citation":{"mla":"Zagorsky, Benjamin, et al. “Forgiver Triumphs in Alternating Prisoner’s Dilemma .” PLoS One, vol. 8, no. 12, e80814, Public Library of Science, 2013, doi:10.1371/journal.pone.0080814.","short":"B. Zagorsky, J. Reiter, K. Chatterjee, M. Nowak, PLoS One 8 (2013).","chicago":"Zagorsky, Benjamin, Johannes Reiter, Krishnendu Chatterjee, and Martin Nowak. “Forgiver Triumphs in Alternating Prisoner’s Dilemma .” PLoS One. Public Library of Science, 2013. https://doi.org/10.1371/journal.pone.0080814.","ama":"Zagorsky B, Reiter J, Chatterjee K, Nowak M. Forgiver triumphs in alternating prisoner’s dilemma . PLoS One. 2013;8(12). doi:10.1371/journal.pone.0080814","ista":"Zagorsky B, Reiter J, Chatterjee K, Nowak M. 2013. Forgiver triumphs in alternating prisoner’s dilemma . PLoS One. 8(12), e80814.","ieee":"B. Zagorsky, J. Reiter, K. Chatterjee, and M. Nowak, “Forgiver triumphs in alternating prisoner’s dilemma ,” PLoS One, vol. 8, no. 12. Public Library of Science, 2013.","apa":"Zagorsky, B., Reiter, J., Chatterjee, K., & Nowak, M. (2013). Forgiver triumphs in alternating prisoner’s dilemma . PLoS One. Public Library of Science. https://doi.org/10.1371/journal.pone.0080814"},"publication":"PLoS One","has_accepted_license":"1","day":"12","scopus_import":1,"pubrep_id":"409","oa_version":"Published Version","file":[{"access_level":"open_access","file_name":"IST-2016-409-v1+1_journal.pone.0080814.pdf","creator":"system","file_size":1050042,"content_type":"application/pdf","file_id":"4868","relation":"main_file","checksum":"808e8b9e6e89658bee4ffbbfac1bd19d","date_updated":"2020-07-14T12:45:34Z","date_created":"2018-12-12T10:11:15Z"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"2247","intvolume":" 8","status":"public","title":"Forgiver triumphs in alternating prisoner's dilemma ","ddc":["000"],"issue":"12","abstract":[{"text":"Cooperative behavior, where one individual incurs a cost to help another, is a wide spread phenomenon. Here we study direct reciprocity in the context of the alternating Prisoner's Dilemma. We consider all strategies that can be implemented by one and two-state automata. We calculate the payoff matrix of all pairwise encounters in the presence of noise. We explore deterministic selection dynamics with and without mutation. Using different error rates and payoff values, we observe convergence to a small number of distinct equilibria. Two of them are uncooperative strict Nash equilibria representing always-defect (ALLD) and Grim. The third equilibrium is mixed and represents a cooperative alliance of several strategies, dominated by a strategy which we call Forgiver. Forgiver cooperates whenever the opponent has cooperated; it defects once when the opponent has defected, but subsequently Forgiver attempts to re-establish cooperation even if the opponent has defected again. Forgiver is not an evolutionarily stable strategy, but the alliance, which it rules, is asymptotically stable. For a wide range of parameter values the most commonly observed outcome is convergence to the mixed equilibrium, dominated by Forgiver. Our results show that although forgiving might incur a short-term loss it can lead to a long-term gain. Forgiveness facilitates stable cooperation in the presence of exploitation and noise.","lang":"eng"}],"type":"journal_article"},{"doi":"10.1111/eva.12020","language":[{"iso":"eng"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"quality_controlled":"1","project":[{"grant_number":"279307","_id":"2581B60A-B435-11E9-9278-68D0E5697425","name":"Quantitative Graph Games: Theory and Applications","call_identifier":"FP7"},{"grant_number":"S11407","_id":"25863FF4-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Game Theory"}],"month":"01","author":[{"last_name":"Reiter","first_name":"Johannes","orcid":"0000-0002-0170-7353","id":"4A918E98-F248-11E8-B48F-1D18A9856A87","full_name":"Reiter, Johannes"},{"full_name":"Božić, Ivana","last_name":"Božić","first_name":"Ivana"},{"id":"135B5B70-E9D2-11E9-BD74-BB415DA2B523","first_name":"Benjamin","last_name":"Allen","full_name":"Allen, Benjamin"},{"full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","first_name":"Krishnendu","last_name":"Chatterjee"},{"last_name":"Nowak","first_name":"Martin","full_name":"Nowak, Martin"}],"related_material":{"record":[{"id":"1400","relation":"dissertation_contains","status":"public"}]},"date_created":"2018-12-11T11:59:58Z","date_updated":"2023-09-07T11:40:43Z","volume":6,"year":"2013","publication_status":"published","publisher":"Wiley-Blackwell","department":[{"_id":"KrCh"}],"file_date_updated":"2020-07-14T12:45:51Z","publist_id":"3931","ec_funded":1,"date_published":"2013-01-01T00:00:00Z","publication":"Evolutionary Applications","citation":{"ista":"Reiter J, Božić I, Allen B, Chatterjee K, Nowak M. 2013. The effect of one additional driver mutation on tumor progression. Evolutionary Applications. 6(1), 34–45.","ieee":"J. Reiter, I. Božić, B. Allen, K. Chatterjee, and M. Nowak, “The effect of one additional driver mutation on tumor progression,” Evolutionary Applications, vol. 6, no. 1. Wiley-Blackwell, pp. 34–45, 2013.","apa":"Reiter, J., Božić, I., Allen, B., Chatterjee, K., & Nowak, M. (2013). The effect of one additional driver mutation on tumor progression. Evolutionary Applications. Wiley-Blackwell. https://doi.org/10.1111/eva.12020","ama":"Reiter J, Božić I, Allen B, Chatterjee K, Nowak M. The effect of one additional driver mutation on tumor progression. Evolutionary Applications. 2013;6(1):34-45. doi:10.1111/eva.12020","chicago":"Reiter, Johannes, Ivana Božić, Benjamin Allen, Krishnendu Chatterjee, and Martin Nowak. “The Effect of One Additional Driver Mutation on Tumor Progression.” Evolutionary Applications. Wiley-Blackwell, 2013. https://doi.org/10.1111/eva.12020.","mla":"Reiter, Johannes, et al. “The Effect of One Additional Driver Mutation on Tumor Progression.” Evolutionary Applications, vol. 6, no. 1, Wiley-Blackwell, 2013, pp. 34–45, doi:10.1111/eva.12020.","short":"J. Reiter, I. Božić, B. Allen, K. Chatterjee, M. Nowak, Evolutionary Applications 6 (2013) 34–45."},"page":"34 - 45","day":"01","has_accepted_license":"1","scopus_import":1,"pubrep_id":"415","oa_version":"Published Version","file":[{"file_size":1172037,"content_type":"application/pdf","creator":"system","file_name":"IST-2016-415-v1+1_Reiter_et_al-2013-Evolutionary_Applications.pdf","access_level":"open_access","date_updated":"2020-07-14T12:45:51Z","date_created":"2018-12-12T10:15:50Z","checksum":"e2955b3889f8a823c3d5a72cb16f8957","relation":"main_file","file_id":"5173"}],"_id":"2858","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["570"],"status":"public","title":"The effect of one additional driver mutation on tumor progression","intvolume":" 6","abstract":[{"lang":"eng","text":"Tumor growth is caused by the acquisition of driver mutations, which enhance the net reproductive rate of cells. Driver mutations may increase cell division, reduce cell death, or allow cells to overcome density-limiting effects. We study the dynamics of tumor growth as one additional driver mutation is acquired. Our models are based on two-type branching processes that terminate in either tumor disappearance or tumor detection. In our first model, both cell types grow exponentially, with a faster rate for cells carrying the additional driver. We find that the additional driver mutation does not affect the survival probability of the lesion, but can substantially reduce the time to reach the detectable size if the lesion is slow growing. In our second model, cells lacking the additional driver cannot exceed a fixed carrying capacity, due to density limitations. In this case, the time to detection depends strongly on this carrying capacity. Our model provides a quantitative framework for studying tumor dynamics during different stages of progression. We observe that early, small lesions need additional drivers, while late stage metastases are only marginally affected by them. These results help to explain why additional driver mutations are typically not detected in fast-growing metastases."}],"issue":"1","type":"journal_article"},{"publist_id":"3985","file_date_updated":"2020-07-14T12:45:49Z","article_number":"e00747","volume":2,"date_updated":"2023-09-07T11:40:43Z","date_created":"2018-12-11T11:59:45Z","related_material":{"record":[{"id":"1400","relation":"dissertation_contains","status":"public"}]},"author":[{"last_name":"Božić","first_name":"Ivana","full_name":"Božić, Ivana"},{"full_name":"Reiter, Johannes","first_name":"Johannes","last_name":"Reiter","id":"4A918E98-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0170-7353"},{"last_name":"Allen","first_name":"Benjamin","full_name":"Allen, Benjamin"},{"first_name":"Tibor","last_name":"Antal","full_name":"Antal, Tibor"},{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","first_name":"Krishnendu","last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu"},{"first_name":"Preya","last_name":"Shah","full_name":"Shah, Preya"},{"full_name":"Moon, Yo","first_name":"Yo","last_name":"Moon"},{"full_name":"Yaqubie, Amin","last_name":"Yaqubie","first_name":"Amin"},{"first_name":"Nicole","last_name":"Kelly","full_name":"Kelly, Nicole"},{"first_name":"Dung","last_name":"Le","full_name":"Le, Dung"},{"full_name":"Lipson, Evan","first_name":"Evan","last_name":"Lipson"},{"first_name":"Paul","last_name":"Chapman","full_name":"Chapman, Paul"},{"first_name":"Luis","last_name":"Diaz","full_name":"Diaz, Luis"},{"last_name":"Vogelstein","first_name":"Bert","full_name":"Vogelstein, Bert"},{"full_name":"Nowak, Martin","last_name":"Nowak","first_name":"Martin"}],"publisher":"eLife Sciences Publications","department":[{"_id":"KrCh"}],"publication_status":"published","year":"2013","month":"06","language":[{"iso":"eng"}],"doi":"10.7554/eLife.00747","quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"abstract":[{"text":"In solid tumors, targeted treatments can lead to dramatic regressions, but responses are often short-lived because resistant cancer cells arise. The major strategy proposed for overcoming resistance is combination therapy. We present a mathematical model describing the evolutionary dynamics of lesions in response to treatment. We first studied 20 melanoma patients receiving vemurafenib. We then applied our model to an independent set of pancreatic, colorectal, and melanoma cancer patients with metastatic disease. We find that dual therapy results in long-term disease control for most patients, if there are no single mutations that cause cross-resistance to both drugs; in patients with large disease burden, triple therapy is needed. We also find that simultaneous therapy with two drugs is much more effective than sequential therapy. Our results provide realistic expectations for the efficacy of new drug combinations and inform the design of trials for new cancer therapeutics.","lang":"eng"}],"type":"journal_article","oa_version":"Published Version","file":[{"date_updated":"2020-07-14T12:45:49Z","date_created":"2018-12-12T10:12:48Z","checksum":"2c38c47815eacd8fa66cb8b404cf7c61","file_id":"4967","relation":"main_file","creator":"system","file_size":3358321,"content_type":"application/pdf","file_name":"IST-2013-134-v1+1_e00747.full.pdf","access_level":"open_access"}],"pubrep_id":"134","intvolume":" 2","title":"Evolutionary dynamics of cancer in response to targeted combination therapy","status":"public","ddc":["570","610"],"_id":"2816","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","has_accepted_license":"1","day":"25","scopus_import":1,"date_published":"2013-06-25T00:00:00Z","citation":{"ama":"Božić I, Reiter J, Allen B, et al. Evolutionary dynamics of cancer in response to targeted combination therapy. eLife. 2013;2. doi:10.7554/eLife.00747","ieee":"I. Božić et al., “Evolutionary dynamics of cancer in response to targeted combination therapy,” eLife, vol. 2. eLife Sciences Publications, 2013.","apa":"Božić, I., Reiter, J., Allen, B., Antal, T., Chatterjee, K., Shah, P., … Nowak, M. (2013). Evolutionary dynamics of cancer in response to targeted combination therapy. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.00747","ista":"Božić I, Reiter J, Allen B, Antal T, Chatterjee K, Shah P, Moon Y, Yaqubie A, Kelly N, Le D, Lipson E, Chapman P, Diaz L, Vogelstein B, Nowak M. 2013. Evolutionary dynamics of cancer in response to targeted combination therapy. eLife. 2, e00747.","short":"I. Božić, J. Reiter, B. Allen, T. Antal, K. Chatterjee, P. Shah, Y. Moon, A. Yaqubie, N. Kelly, D. Le, E. Lipson, P. Chapman, L. Diaz, B. Vogelstein, M. Nowak, ELife 2 (2013).","mla":"Božić, Ivana, et al. “Evolutionary Dynamics of Cancer in Response to Targeted Combination Therapy.” ELife, vol. 2, e00747, eLife Sciences Publications, 2013, doi:10.7554/eLife.00747.","chicago":"Božić, Ivana, Johannes Reiter, Benjamin Allen, Tibor Antal, Krishnendu Chatterjee, Preya Shah, Yo Moon, et al. “Evolutionary Dynamics of Cancer in Response to Targeted Combination Therapy.” ELife. eLife Sciences Publications, 2013. https://doi.org/10.7554/eLife.00747."},"publication":"eLife"},{"conference":{"start_date":"2013-07-13","location":"St. Petersburg, Russia","end_date":"2013-07-19","name":"CAV: Computer Aided Verification"},"doi":"10.1007/978-3-642-39799-8_6","language":[{"iso":"eng"}],"oa":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1303.5251"}],"external_id":{"arxiv":["1303.5251"]},"quality_controlled":"1","project":[{"call_identifier":"FP7","name":"Quantitative Graph Games: Theory and Applications","grant_number":"279307","_id":"2581B60A-B435-11E9-9278-68D0E5697425"},{"grant_number":"S 11407_N23","_id":"25832EC2-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Rigorous Systems Engineering"},{"call_identifier":"FWF","name":"Modern Graph Algorithmic Techniques in Formal Verification","grant_number":"P 23499-N23","_id":"2584A770-B435-11E9-9278-68D0E5697425"},{"_id":"2587B514-B435-11E9-9278-68D0E5697425","name":"Microsoft Research Faculty Fellowship"}],"month":"01","author":[{"full_name":"Reiter, Johannes","orcid":"0000-0002-0170-7353","id":"4A918E98-F248-11E8-B48F-1D18A9856A87","last_name":"Reiter","first_name":"Johannes"},{"full_name":"Božić, Ivana","last_name":"Božić","first_name":"Ivana"},{"first_name":"Krishnendu","last_name":"Chatterjee","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu"},{"full_name":"Nowak, Martin","last_name":"Nowak","first_name":"Martin"}],"related_material":{"record":[{"relation":"earlier_version","status":"public","id":"5399"},{"status":"public","relation":"dissertation_contains","id":"1400"}]},"date_updated":"2023-09-07T11:40:43Z","date_created":"2018-12-11T11:55:08Z","volume":8044,"year":"2013","publication_status":"published","department":[{"_id":"KrCh"}],"publisher":"Springer","ec_funded":1,"publist_id":"5077","date_published":"2013-01-01T00:00:00Z","publication":"Proceedings of 25th Int. Conf. on Computer Aided Verification","citation":{"apa":"Reiter, J., Božić, I., Chatterjee, K., & Nowak, M. (2013). TTP: Tool for tumor progression. In Proceedings of 25th Int. Conf. on Computer Aided Verification (Vol. 8044, pp. 101–106). St. Petersburg, Russia: Springer. https://doi.org/10.1007/978-3-642-39799-8_6","ieee":"J. Reiter, I. Božić, K. Chatterjee, and M. Nowak, “TTP: Tool for tumor progression,” in Proceedings of 25th Int. Conf. on Computer Aided Verification, St. Petersburg, Russia, 2013, vol. 8044, pp. 101–106.","ista":"Reiter J, Božić I, Chatterjee K, Nowak M. 2013. TTP: Tool for tumor progression. Proceedings of 25th Int. Conf. on Computer Aided Verification. CAV: Computer Aided VerificationLecture Notes in Computer Science, LNCS, vol. 8044, 101–106.","ama":"Reiter J, Božić I, Chatterjee K, Nowak M. TTP: Tool for tumor progression. In: Proceedings of 25th Int. Conf. on Computer Aided Verification. Vol 8044. Lecture Notes in Computer Science. Springer; 2013:101-106. doi:10.1007/978-3-642-39799-8_6","chicago":"Reiter, Johannes, Ivana Božić, Krishnendu Chatterjee, and Martin Nowak. “TTP: Tool for Tumor Progression.” In Proceedings of 25th Int. Conf. on Computer Aided Verification, 8044:101–6. Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-39799-8_6.","short":"J. Reiter, I. Božić, K. Chatterjee, M. Nowak, in:, Proceedings of 25th Int. Conf. on Computer Aided Verification, Springer, 2013, pp. 101–106.","mla":"Reiter, Johannes, et al. “TTP: Tool for Tumor Progression.” Proceedings of 25th Int. Conf. on Computer Aided Verification, vol. 8044, Springer, 2013, pp. 101–06, doi:10.1007/978-3-642-39799-8_6."},"page":"101 - 106","day":"01","scopus_import":1,"series_title":"Lecture Notes in Computer Science","oa_version":"Preprint","_id":"2000","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","title":"TTP: Tool for tumor progression","intvolume":" 8044","abstract":[{"lang":"eng","text":"In this work we present a flexible tool for tumor progression, which simulates the evolutionary dynamics of cancer. Tumor progression implements a multi-type branching process where the key parameters are the fitness landscape, the mutation rate, and the average time of cell division. The fitness of a cancer cell depends on the mutations it has accumulated. The input to our tool could be any fitness landscape, mutation rate, and cell division time, and the tool produces the growth dynamics and all relevant statistics."}],"type":"conference","alternative_title":["LNCS"]},{"alternative_title":["LNCS"],"type":"conference","abstract":[{"text":"We develop program synthesis techniques that can help programmers fix concurrency-related bugs. We make two new contributions to synthesis for concurrency, the first improving the efficiency of the synthesized code, and the second improving the efficiency of the synthesis procedure itself. The first contribution is to have the synthesis procedure explore a variety of (sequential) semantics-preserving program transformations. Classically, only one such transformation has been considered, namely, the insertion of synchronization primitives (such as locks). Based on common manual bug-fixing techniques used by Linux device-driver developers, we explore additional, more efficient transformations, such as the reordering of independent instructions. The second contribution is to speed up the counterexample-guided removal of concurrency bugs within the synthesis procedure by considering partial-order traces (instead of linear traces) as counterexamples. A partial-order error trace represents a set of linear (interleaved) traces of a concurrent program all of which lead to the same error. By eliminating a partial-order error trace, we eliminate in a single iteration of the synthesis procedure all linearizations of the partial-order trace. We evaluated our techniques on several simplified examples of real concurrency bugs that occurred in Linux device drivers.","lang":"eng"}],"intvolume":" 8044","status":"public","ddc":["000","004"],"title":"Efficient synthesis for concurrency by semantics-preserving transformations","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"2445","file":[{"access_level":"open_access","file_name":"IST-2014-199-v1+1_cav2013-final.pdf","file_size":365548,"content_type":"application/pdf","creator":"system","relation":"main_file","file_id":"5158","checksum":"70c70ca5487faba82262c63e1b678a27","date_updated":"2020-07-14T12:45:40Z","date_created":"2018-12-12T10:15:37Z"}],"oa_version":"Submitted Version","pubrep_id":"199","scopus_import":1,"has_accepted_license":"1","day":"01","page":"951 - 967","citation":{"ama":"Cerny P, Henzinger TA, Radhakrishna A, Ryzhyk L, Tarrach T. Efficient synthesis for concurrency by semantics-preserving transformations. In: Vol 8044. Springer; 2013:951-967. doi:10.1007/978-3-642-39799-8_68","ista":"Cerny P, Henzinger TA, Radhakrishna A, Ryzhyk L, Tarrach T. 2013. Efficient synthesis for concurrency by semantics-preserving transformations. CAV: Computer Aided Verification, LNCS, vol. 8044, 951–967.","ieee":"P. Cerny, T. A. Henzinger, A. Radhakrishna, L. Ryzhyk, and T. Tarrach, “Efficient synthesis for concurrency by semantics-preserving transformations,” presented at the CAV: Computer Aided Verification, St. Petersburg, Russia, 2013, vol. 8044, pp. 951–967.","apa":"Cerny, P., Henzinger, T. A., Radhakrishna, A., Ryzhyk, L., & Tarrach, T. (2013). Efficient synthesis for concurrency by semantics-preserving transformations (Vol. 8044, pp. 951–967). Presented at the CAV: Computer Aided Verification, St. Petersburg, Russia: Springer. https://doi.org/10.1007/978-3-642-39799-8_68","mla":"Cerny, Pavol, et al. Efficient Synthesis for Concurrency by Semantics-Preserving Transformations. Vol. 8044, Springer, 2013, pp. 951–67, doi:10.1007/978-3-642-39799-8_68.","short":"P. Cerny, T.A. Henzinger, A. Radhakrishna, L. Ryzhyk, T. Tarrach, in:, Springer, 2013, pp. 951–967.","chicago":"Cerny, Pavol, Thomas A Henzinger, Arjun Radhakrishna, Leonid Ryzhyk, and Thorsten Tarrach. “Efficient Synthesis for Concurrency by Semantics-Preserving Transformations,” 8044:951–67. Springer, 2013. https://doi.org/10.1007/978-3-642-39799-8_68."},"date_published":"2013-07-01T00:00:00Z","ec_funded":1,"publist_id":"4458","file_date_updated":"2020-07-14T12:45:40Z","department":[{"_id":"ToHe"}],"publisher":"Springer","publication_status":"published","year":"2013","volume":8044,"date_updated":"2023-09-07T11:57:01Z","date_created":"2018-12-11T11:57:42Z","related_material":{"record":[{"id":"1130","status":"public","relation":"dissertation_contains"}]},"author":[{"first_name":"Pavol","last_name":"Cerny","id":"4DCBEFFE-F248-11E8-B48F-1D18A9856A87","full_name":"Cerny, Pavol"},{"full_name":"Henzinger, Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","orcid":"0000−0002−2985−7724","first_name":"Thomas A","last_name":"Henzinger"},{"full_name":"Radhakrishna, Arjun","id":"3B51CAC4-F248-11E8-B48F-1D18A9856A87","last_name":"Radhakrishna","first_name":"Arjun"},{"full_name":"Ryzhyk, Leonid","first_name":"Leonid","last_name":"Ryzhyk"},{"full_name":"Tarrach, Thorsten","orcid":"0000-0003-4409-8487","id":"3D6E8F2C-F248-11E8-B48F-1D18A9856A87","last_name":"Tarrach","first_name":"Thorsten"}],"month":"07","project":[{"grant_number":"267989","_id":"25EE3708-B435-11E9-9278-68D0E5697425","name":"Quantitative Reactive Modeling","call_identifier":"FP7"},{"name":"Rigorous Systems Engineering","call_identifier":"FWF","_id":"25832EC2-B435-11E9-9278-68D0E5697425","grant_number":"S 11407_N23"}],"quality_controlled":"1","oa":1,"language":[{"iso":"eng"}],"doi":"10.1007/978-3-642-39799-8_68","conference":{"end_date":"2013-07-19","start_date":"2013-07-13","location":"St. Petersburg, Russia","name":"CAV: Computer Aided Verification"}},{"title":"Ants disinfect fungus-exposed brood by oral uptake and spread of their poison","status":"public","intvolume":" 23","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"2926","oa_version":"None","type":"journal_article","abstract":[{"lang":"eng","text":"To fight infectious diseases, host immune defenses are employed at multiple levels. Sanitary behavior, such as pathogen avoidance and removal, acts as a first line of defense to prevent infection [1] before activation of the physiological immune system. Insect societies have evolved a wide range of collective hygiene measures and intensive health care toward pathogen-exposed group members [2]. One of the most common behaviors is allogrooming, in which nestmates remove infectious particles from the body surfaces of exposed individuals [3]. Here we show that, in invasive garden ants, grooming of fungus-exposed brood is effective beyond the sheer mechanical removal of fungal conidiospores; it also includes chemical disinfection through the application of poison produced by the ants themselves. Formic acid is the main active component of the poison. It inhibits fungal growth of conidiospores remaining on the brood surface after grooming and also those collected in the mouth of the grooming ant. This dual function is achieved by uptake of the poison droplet into the mouth through acidopore self-grooming and subsequent application onto the infectious brood via brood grooming. This extraordinary behavior extends the current understanding of grooming and the establishment of social immunity in insect societies."}],"issue":"1","page":"76 - 82","publication":"Current Biology","citation":{"chicago":"Tragust, Simon, Barbara Mitteregger, Vanessa Barone, Matthias Konrad, Line V Ugelvig, and Sylvia Cremer. “Ants Disinfect Fungus-Exposed Brood by Oral Uptake and Spread of Their Poison.” Current Biology. Cell Press, 2013. https://doi.org/10.1016/j.cub.2012.11.034.","short":"S. Tragust, B. Mitteregger, V. Barone, M. Konrad, L.V. Ugelvig, S. Cremer, Current Biology 23 (2013) 76–82.","mla":"Tragust, Simon, et al. “Ants Disinfect Fungus-Exposed Brood by Oral Uptake and Spread of Their Poison.” Current Biology, vol. 23, no. 1, Cell Press, 2013, pp. 76–82, doi:10.1016/j.cub.2012.11.034.","ieee":"S. Tragust, B. Mitteregger, V. Barone, M. Konrad, L. V. Ugelvig, and S. Cremer, “Ants disinfect fungus-exposed brood by oral uptake and spread of their poison,” Current Biology, vol. 23, no. 1. Cell Press, pp. 76–82, 2013.","apa":"Tragust, S., Mitteregger, B., Barone, V., Konrad, M., Ugelvig, L. V., & Cremer, S. (2013). Ants disinfect fungus-exposed brood by oral uptake and spread of their poison. Current Biology. Cell Press. https://doi.org/10.1016/j.cub.2012.11.034","ista":"Tragust S, Mitteregger B, Barone V, Konrad M, Ugelvig LV, Cremer S. 2013. Ants disinfect fungus-exposed brood by oral uptake and spread of their poison. Current Biology. 23(1), 76–82.","ama":"Tragust S, Mitteregger B, Barone V, Konrad M, Ugelvig LV, Cremer S. Ants disinfect fungus-exposed brood by oral uptake and spread of their poison. Current Biology. 2013;23(1):76-82. doi:10.1016/j.cub.2012.11.034"},"date_published":"2013-01-07T00:00:00Z","scopus_import":1,"day":"07","publication_status":"published","department":[{"_id":"SyCr"},{"_id":"CaHe"}],"publisher":"Cell Press","acknowledgement":"Funding for this project was obtained by the German Research Foundation (DFG, to S.C.) and the European Research Council (ERC, through an ERC-Starting Grant to S.C. and an Individual Marie Curie IEF fellowship to L.V.U.).\r\nWe thank Jørgen Eilenberg, Bernhardt Steinwender, Miriam Stock, and Meghan L. Vyleta for the fungal strain and its characterization; Volker Witte for chemical information; Eva Sixt for ant drawings; and Robert Hauschild for help with image analysis. We further thank Martin Kaltenpoth, Michael Sixt, Jürgen Heinze, and Joachim Ruther for discussion and Daria Siekhaus, Sophie A.O. Armitage, and Leila Masri for comments on the manuscript. \r\n","year":"2013","date_updated":"2023-09-07T12:05:08Z","date_created":"2018-12-11T12:00:23Z","volume":23,"author":[{"first_name":"Simon","last_name":"Tragust","id":"35A7A418-F248-11E8-B48F-1D18A9856A87","full_name":"Tragust, Simon"},{"full_name":"Mitteregger, Barbara","first_name":"Barbara","last_name":"Mitteregger","id":"479DDAAC-E9CD-11E9-9B5F-82450873F7A1"},{"full_name":"Barone, Vanessa","last_name":"Barone","first_name":"Vanessa","orcid":"0000-0003-2676-3367","id":"419EECCC-F248-11E8-B48F-1D18A9856A87"},{"id":"46528076-F248-11E8-B48F-1D18A9856A87","first_name":"Matthias","last_name":"Konrad","full_name":"Konrad, Matthias"},{"first_name":"Line V","last_name":"Ugelvig","id":"3DC97C8E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-1832-8883","full_name":"Ugelvig, Line V"},{"full_name":"Cremer, Sylvia","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2193-3868","first_name":"Sylvia","last_name":"Cremer"}],"related_material":{"record":[{"relation":"research_data","status":"public","id":"9757"},{"id":"961","relation":"dissertation_contains","status":"public"}]},"publist_id":"3811","ec_funded":1,"quality_controlled":"1","project":[{"grant_number":"CR-118/3-1","_id":"25DAF0B2-B435-11E9-9278-68D0E5697425","name":"Host-Parasite Coevolution"},{"grant_number":"243071","_id":"25DC711C-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"Social Vaccination in Ant Colonies: from Individual Mechanisms to Society Effects"},{"grant_number":"302004","_id":"25DDF0F0-B435-11E9-9278-68D0E5697425","name":"Pathogen Detectors Collective disease defence and pathogen detection abilities in ant societies: a chemo-neuro-immunological approach","call_identifier":"FP7"}],"language":[{"iso":"eng"}],"doi":"10.1016/j.cub.2012.11.034","month":"01"},{"project":[{"grant_number":"P 23499-N23","_id":"2584A770-B435-11E9-9278-68D0E5697425","name":"Modern Graph Algorithmic Techniques in Formal Verification","call_identifier":"FWF"},{"_id":"25863FF4-B435-11E9-9278-68D0E5697425","grant_number":"S11407","call_identifier":"FWF","name":"Game Theory"},{"grant_number":"279307","_id":"2581B60A-B435-11E9-9278-68D0E5697425","name":"Quantitative Graph Games: Theory and Applications","call_identifier":"FP7"},{"name":"Microsoft Research Faculty Fellowship","_id":"2587B514-B435-11E9-9278-68D0E5697425"}],"quality_controlled":"1","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1305.4103"}],"oa":1,"external_id":{"arxiv":["1305.4103"]},"language":[{"iso":"eng"}],"doi":"10.1109/LICS.2013.39","conference":{"start_date":"2013-06-25","location":"New Orleans, LA, United States","end_date":"2013-06-28","name":"LICS: Logic in Computer Science"},"month":"08","publisher":"IEEE","department":[{"_id":"KrCh"}],"publication_status":"published","year":"2013","date_created":"2018-12-11T11:56:53Z","date_updated":"2023-09-20T11:15:30Z","related_material":{"record":[{"status":"public","relation":"later_version","id":"1294"}]},"author":[{"full_name":"Brázdil, Tomáš","last_name":"Brázdil","first_name":"Tomáš"},{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","first_name":"Krishnendu","last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu"},{"first_name":"Vojtěch","last_name":"Forejt","full_name":"Forejt, Vojtěch"},{"first_name":"Antonín","last_name":"Kučera","full_name":"Kučera, Antonín"}],"publist_id":"4622","ec_funded":1,"page":"331 - 340","citation":{"chicago":"Brázdil, Tomáš, Krishnendu Chatterjee, Vojtěch Forejt, and Antonín Kučera. “Trading Performance for Stability in Markov Decision Processes.” In 28th Annual ACM/IEEE Symposium, 331–40. IEEE, 2013. https://doi.org/10.1109/LICS.2013.39.","short":"T. Brázdil, K. Chatterjee, V. Forejt, A. Kučera, in:, 28th Annual ACM/IEEE Symposium, IEEE, 2013, pp. 331–340.","mla":"Brázdil, Tomáš, et al. “Trading Performance for Stability in Markov Decision Processes.” 28th Annual ACM/IEEE Symposium, IEEE, 2013, pp. 331–40, doi:10.1109/LICS.2013.39.","apa":"Brázdil, T., Chatterjee, K., Forejt, V., & Kučera, A. (2013). Trading performance for stability in Markov decision processes. In 28th Annual ACM/IEEE Symposium (pp. 331–340). New Orleans, LA, United States: IEEE. https://doi.org/10.1109/LICS.2013.39","ieee":"T. Brázdil, K. Chatterjee, V. Forejt, and A. Kučera, “Trading performance for stability in Markov decision processes,” in 28th Annual ACM/IEEE Symposium, New Orleans, LA, United States, 2013, pp. 331–340.","ista":"Brázdil T, Chatterjee K, Forejt V, Kučera A. 2013. Trading performance for stability in Markov decision processes. 28th Annual ACM/IEEE Symposium. LICS: Logic in Computer Science, 331–340.","ama":"Brázdil T, Chatterjee K, Forejt V, Kučera A. Trading performance for stability in Markov decision processes. In: 28th Annual ACM/IEEE Symposium. IEEE; 2013:331-340. doi:10.1109/LICS.2013.39"},"publication":"28th Annual ACM/IEEE Symposium","date_published":"2013-08-01T00:00:00Z","scopus_import":1,"day":"01","title":"Trading performance for stability in Markov decision processes","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"2305","oa_version":"Preprint","type":"conference","abstract":[{"text":"We study the complexity of central controller synthesis problems for finite-state Markov decision processes, where the objective is to optimize both the expected mean-payoff performance of the system and its stability. e argue that the basic theoretical notion of expressing the stability in terms of the variance of the mean-payoff (called global variance in our paper) is not always sufficient, since it ignores possible instabilities on respective runs. For this reason we propose alernative definitions of stability, which we call local and hybrid variance, and which express how rewards on each run deviate from the run's own mean-payoff and from the expected mean-payoff, respectively. We show that a strategy ensuring both the expected mean-payoff and the variance below given bounds requires randomization and memory, under all the above semantics of variance. We then look at the problem of determining whether there is a such a strategy. For the global variance, we show that the problem is in PSPACE, and that the answer can be approximated in pseudo-polynomial time. For the hybrid variance, the analogous decision problem is in NP, and a polynomial-time approximating algorithm also exists. For local variance, we show that the decision problem is in NP. Since the overall performance can be traded for stability (and vice versa), we also present algorithms for approximating the associated Pareto curve in all the three cases. Finally, we study a special case of the decision problems, where we require a given expected mean-payoff together with zero variance. Here we show that the problems can be all solved in polynomial time.","lang":"eng"}]},{"quality_controlled":"1","page":"163 - 172","project":[{"_id":"25832EC2-B435-11E9-9278-68D0E5697425","grant_number":"S 11407_N23","call_identifier":"FWF","name":"Rigorous Systems Engineering"},{"name":"Game Theory","call_identifier":"FWF","_id":"25863FF4-B435-11E9-9278-68D0E5697425","grant_number":"S11407"},{"_id":"2584A770-B435-11E9-9278-68D0E5697425","grant_number":"P 23499-N23","call_identifier":"FWF","name":"Modern Graph Algorithmic Techniques in Formal Verification"},{"call_identifier":"FP7","name":"Quantitative Graph Games: Theory and Applications","grant_number":"279307","_id":"2581B60A-B435-11E9-9278-68D0E5697425"},{"name":"Microsoft Research Faculty Fellowship","_id":"2587B514-B435-11E9-9278-68D0E5697425"}],"publication":"Proceedings of the 16th International conference on Hybrid systems: Computation and control","citation":{"chicago":"Chatterjee, Krishnendu, Alexander Kößler, and Ulrich Schmid. “Automated Analysis of Real-Time Scheduling Using Graph Games.” In Proceedings of the 16th International Conference on Hybrid Systems: Computation and Control, 163–72. ACM, 2013. https://doi.org/10.1145/2461328.2461356.","mla":"Chatterjee, Krishnendu, et al. “Automated Analysis of Real-Time Scheduling Using Graph Games.” Proceedings of the 16th International Conference on Hybrid Systems: Computation and Control, ACM, 2013, pp. 163–72, doi:10.1145/2461328.2461356.","short":"K. Chatterjee, A. Kößler, U. Schmid, in:, Proceedings of the 16th International Conference on Hybrid Systems: Computation and Control, ACM, 2013, pp. 163–172.","ista":"Chatterjee K, Kößler A, Schmid U. 2013. Automated analysis of real-time scheduling using graph games. Proceedings of the 16th International conference on Hybrid systems: Computation and control. HSCC: Hybrid Systems - Computation and Control, 163–172.","ieee":"K. Chatterjee, A. Kößler, and U. Schmid, “Automated analysis of real-time scheduling using graph games,” in Proceedings of the 16th International conference on Hybrid systems: Computation and control, Philadelphia, PA, United States, 2013, pp. 163–172.","apa":"Chatterjee, K., Kößler, A., & Schmid, U. (2013). Automated analysis of real-time scheduling using graph games. In Proceedings of the 16th International conference on Hybrid systems: Computation and control (pp. 163–172). Philadelphia, PA, United States: ACM. https://doi.org/10.1145/2461328.2461356","ama":"Chatterjee K, Kößler A, Schmid U. Automated analysis of real-time scheduling using graph games. In: Proceedings of the 16th International Conference on Hybrid Systems: Computation and Control. ACM; 2013:163-172. doi:10.1145/2461328.2461356"},"language":[{"iso":"eng"}],"conference":{"end_date":"2013-04-11","location":"Philadelphia, PA, United States","start_date":"2013-04-08","name":"HSCC: Hybrid Systems - Computation and Control"},"doi":"10.1145/2461328.2461356","date_published":"2013-04-01T00:00:00Z","scopus_import":1,"day":"01","month":"04","publication_identifier":{"isbn":["978-1-4503-1567-8 "]},"status":"public","publication_status":"published","title":"Automated analysis of real-time scheduling using graph games","publisher":"ACM","department":[{"_id":"KrCh"}],"year":"2013","_id":"2820","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_created":"2018-12-11T11:59:46Z","date_updated":"2023-09-27T12:52:38Z","oa_version":"None","author":[{"first_name":"Krishnendu","last_name":"Chatterjee","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","full_name":"Chatterjee, Krishnendu"},{"full_name":"Kößler, Alexander","last_name":"Kößler","first_name":"Alexander"},{"full_name":"Schmid, Ulrich","first_name":"Ulrich","last_name":"Schmid"}],"related_material":{"record":[{"id":"738","relation":"later_version","status":"public"}]},"type":"conference","abstract":[{"text":"In this paper, we introduce the powerful framework of graph games for the analysis of real-time scheduling with firm deadlines. We introduce a novel instance of a partial-observation game that is suitable for this purpose, and prove decidability of all the involved decision problems. We derive a graph game that allows the automated computation of the competitive ratio (along with an optimal witness algorithm for the competitive ratio) and establish an NP-completeness proof for the graph game problem. For a given on-line algorithm, we present polynomial time solution for computing (i) the worst-case utility; (ii) the worst-case utility ratio w.r.t. a clairvoyant off-line algorithm; and (iii) the competitive ratio. A major strength of the proposed approach lies in its flexibility w.r.t. incorporating additional constraints on the adversary and/or the algorithm, including limited maximum or average load, finiteness of periods of overload, etc., which are easily added by means of additional instances of standard objective functions for graph games. ","lang":"eng"}],"ec_funded":1,"publist_id":"3981"},{"publist_id":"4672","author":[{"first_name":"Rustem","last_name":"Takhanov","id":"2CCAC26C-F248-11E8-B48F-1D18A9856A87","full_name":"Takhanov, Rustem"},{"full_name":"Kolmogorov, Vladimir","first_name":"Vladimir","last_name":"Kolmogorov","id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87"}],"related_material":{"record":[{"status":"public","relation":"later_version","id":"1794"}]},"date_created":"2018-12-11T11:56:41Z","date_updated":"2023-10-17T09:51:32Z","volume":28,"year":"2013","publication_status":"published","publisher":"ML Research Press","department":[{"_id":"VlKo"}],"month":"06","conference":{"end_date":"2013-06-21","start_date":"2013-06-16","location":"Atlanta, GA, USA","name":"ICML: International Conference on Machine Learning"},"language":[{"iso":"eng"}],"main_file_link":[{"url":"http://proceedings.mlr.press/v28/takhanov13.pdf?CFID=105472548&CFTOKEN=5c5859b5d97b4439-27B4AC58-BA92-A964-B598CAACEE6CC515","open_access":"1"}],"oa":1,"quality_controlled":"1","abstract":[{"text":"We consider Conditional Random Fields (CRFs) with pattern-based potentials defined on a chain. In this model the energy of a string (labeling) x1...xn is the sum of terms over intervals [i,j] where each term is non-zero only if the substring xi...xj equals a prespecified pattern α. Such CRFs can be naturally applied to many sequence tagging problems.\r\nWe present efficient algorithms for the three standard inference tasks in a CRF, namely computing (i) the partition function, (ii) marginals, and (iii) computing the MAP. Their complexities are respectively O(nL), O(nLℓmax) and O(nLmin{|D|,log(ℓmax+1)}) where L is the combined length of input patterns, ℓmax is the maximum length of a pattern, and D is the input alphabet. This improves on the previous algorithms of (Ye et al., 2009) whose complexities are respectively O(nL|D|), O(n|Γ|L2ℓ2max) and O(nL|D|), where |Γ| is the number of input patterns.\r\nIn addition, we give an efficient algorithm for sampling. Finally, we consider the case of non-positive weights. (Komodakis & Paragios, 2009) gave an O(nL) algorithm for computing the MAP. We present a modification that has the same worst-case complexity but can beat it in the best case. ","lang":"eng"}],"issue":"3","type":"conference","alternative_title":["JMLR"],"oa_version":"Submitted Version","_id":"2272","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","title":"Inference algorithms for pattern-based CRFs on sequence data","intvolume":" 28","day":"01","article_processing_charge":"No","scopus_import":"1","date_published":"2013-06-01T00:00:00Z","publication":"ICML'13 Proceedings of the 30th International Conference on International","citation":{"chicago":"Takhanov, Rustem, and Vladimir Kolmogorov. “Inference Algorithms for Pattern-Based CRFs on Sequence Data.” In ICML’13 Proceedings of the 30th International Conference on International, 28:145–53. ML Research Press, 2013.","mla":"Takhanov, Rustem, and Vladimir Kolmogorov. “Inference Algorithms for Pattern-Based CRFs on Sequence Data.” ICML’13 Proceedings of the 30th International Conference on International, vol. 28, no. 3, ML Research Press, 2013, pp. 145–53.","short":"R. Takhanov, V. Kolmogorov, in:, ICML’13 Proceedings of the 30th International Conference on International, ML Research Press, 2013, pp. 145–153.","ista":"Takhanov R, Kolmogorov V. 2013. Inference algorithms for pattern-based CRFs on sequence data. ICML’13 Proceedings of the 30th International Conference on International. ICML: International Conference on Machine Learning, JMLR, vol. 28, 145–153.","ieee":"R. Takhanov and V. Kolmogorov, “Inference algorithms for pattern-based CRFs on sequence data,” in ICML’13 Proceedings of the 30th International Conference on International, Atlanta, GA, USA, 2013, vol. 28, no. 3, pp. 145–153.","apa":"Takhanov, R., & Kolmogorov, V. (2013). Inference algorithms for pattern-based CRFs on sequence data. In ICML’13 Proceedings of the 30th International Conference on International (Vol. 28, pp. 145–153). Atlanta, GA, USA: ML Research Press.","ama":"Takhanov R, Kolmogorov V. Inference algorithms for pattern-based CRFs on sequence data. In: ICML’13 Proceedings of the 30th International Conference on International. Vol 28. ML Research Press; 2013:145-153."},"page":"145 - 153"},{"article_number":"e25688","publist_id":"4455","ec_funded":1,"year":"2013","pmid":1,"publication_status":"published","department":[{"_id":"JiFr"}],"publisher":"Taylor & Francis","author":[{"full_name":"Remy, Estelle","last_name":"Remy","first_name":"Estelle"},{"full_name":"Baster, Pawel","first_name":"Pawel","last_name":"Baster","id":"3028BD74-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Jirí","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596","full_name":"Friml, Jirí"},{"last_name":"Duque","first_name":"Paula","full_name":"Duque, Paula"}],"date_updated":"2023-10-17T11:15:14Z","date_created":"2018-12-11T11:57:43Z","volume":8,"month":"07","oa":1,"external_id":{"pmid":["23857365"]},"main_file_link":[{"open_access":"1","url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4091088/"}],"quality_controlled":"1","project":[{"grant_number":"282300","_id":"25716A02-B435-11E9-9278-68D0E5697425","name":"Polarity and subcellular dynamics in plants","call_identifier":"FP7"}],"doi":"10.4161/psb.25688","language":[{"iso":"eng"}],"type":"journal_article","abstract":[{"text":"Cell-to-cell directional flow of the phytohormone auxin is primarily established by polar localization of the PIN auxin transporters, a process tightly regulated at multiple levels by auxin itself. We recently reported that, in the context of strong auxin flows, activity of the vacuolar ZIFL1.1 transporter is required for fine-tuning of polar auxin transport rates in the Arabidopsis root. In particular, ZIFL1.1 function protects plasma-membrane stability of the PIN2 carrier in epidermal root tip cells under conditions normally triggering PIN2 degradation. Here, we show that ZIFL1.1 activity at the root tip also promotes PIN1 plasma-membrane abundance in central cylinder cells, thus supporting the notion that ZIFL1.1 acts as a general positive modulator of polar auxin transport in roots.","lang":"eng"}],"issue":"10","_id":"2448","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","title":"ZIFL1.1 transporter modulates polar auxin transport by stabilizing membrane abundance of multiple PINs in Arabidopsis root tip","intvolume":" 8","oa_version":"Submitted Version","scopus_import":"1","day":"10","article_processing_charge":"No","publication":"Plant Signaling & Behavior","citation":{"chicago":"Remy, Estelle, Pawel Baster, Jiří Friml, and Paula Duque. “ZIFL1.1 Transporter Modulates Polar Auxin Transport by Stabilizing Membrane Abundance of Multiple PINs in Arabidopsis Root Tip.” Plant Signaling & Behavior. Taylor & Francis, 2013. https://doi.org/10.4161/psb.25688.","mla":"Remy, Estelle, et al. “ZIFL1.1 Transporter Modulates Polar Auxin Transport by Stabilizing Membrane Abundance of Multiple PINs in Arabidopsis Root Tip.” Plant Signaling & Behavior, vol. 8, no. 10, e25688, Taylor & Francis, 2013, doi:10.4161/psb.25688.","short":"E. Remy, P. Baster, J. Friml, P. Duque, Plant Signaling & Behavior 8 (2013).","ista":"Remy E, Baster P, Friml J, Duque P. 2013. ZIFL1.1 transporter modulates polar auxin transport by stabilizing membrane abundance of multiple PINs in Arabidopsis root tip. Plant Signaling & Behavior. 8(10), e25688.","apa":"Remy, E., Baster, P., Friml, J., & Duque, P. (2013). ZIFL1.1 transporter modulates polar auxin transport by stabilizing membrane abundance of multiple PINs in Arabidopsis root tip. Plant Signaling & Behavior. Taylor & Francis. https://doi.org/10.4161/psb.25688","ieee":"E. Remy, P. Baster, J. Friml, and P. Duque, “ZIFL1.1 transporter modulates polar auxin transport by stabilizing membrane abundance of multiple PINs in Arabidopsis root tip,” Plant Signaling & Behavior, vol. 8, no. 10. Taylor & Francis, 2013.","ama":"Remy E, Baster P, Friml J, Duque P. ZIFL1.1 transporter modulates polar auxin transport by stabilizing membrane abundance of multiple PINs in Arabidopsis root tip. Plant Signaling & Behavior. 2013;8(10). doi:10.4161/psb.25688"},"article_type":"original","date_published":"2013-07-10T00:00:00Z"},{"publist_id":"3939","pmid":1,"year":"2013","publisher":"The Royal Society","department":[{"_id":"CaGu"}],"publication_status":"published","related_material":{"record":[{"relation":"research_data","status":"public","id":"9751"}]},"author":[{"full_name":"Refardt, Dominik","last_name":"Refardt","first_name":"Dominik"},{"full_name":"Bergmiller, Tobias","first_name":"Tobias","last_name":"Bergmiller","id":"2C471CFA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5396-4346"},{"last_name":"Kümmerli","first_name":"Rolf","full_name":"Kümmerli, Rolf"}],"volume":280,"date_created":"2018-12-11T11:59:56Z","date_updated":"2023-10-18T06:43:23Z","publication_identifier":{"eissn":["1471-2954"]},"month":"05","oa":1,"external_id":{"pmid":["23516238"]},"main_file_link":[{"open_access":"1","url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3619501/"}],"quality_controlled":"1","doi":"10.1098/rspb.2012.3035","language":[{"iso":"eng"}],"type":"journal_article","issue":"1759","abstract":[{"lang":"eng","text":"High relatedness among interacting individuals has generally been considered a precondition for the evolution of altruism. However, kin-selection theory also predicts the evolution of altruism when relatedness is low, as long as the cost of the altruistic act is minor compared with its benefit. Here, we demonstrate evidence for a low-cost altruistic act in bacteria. We investigated Escherichia coli responding to the attack of an obligately lytic phage by committing suicide in order to prevent parasite transmission to nearby relatives. We found that bacterial suicide provides large benefits to survivors at marginal costs to committers. The cost of suicide was low, because infected cells are moribund, rapidly dying upon phage infection, such that no more opportunity for reproduction remains. As a consequence of its marginal cost, host suicide was selectively favoured even when relatedness between committers and survivors approached zero. Altogether, our findings demonstrate that low-cost suicide can evolve with ease, represents an effective host-defence strategy, and seems to be widespread among microbes. Moreover, low-cost suicide might also occur in higher organisms as exemplified by infected social insect workers leaving the colony to die in isolation."}],"_id":"2853","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 280","status":"public","title":"Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection","oa_version":"Submitted Version","scopus_import":"1","article_processing_charge":"No","day":"22","citation":{"ama":"Refardt D, Bergmiller T, Kümmerli R. Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection. Proceedings of the Royal Society of London Series B Biological Sciences. 2013;280(1759). doi:10.1098/rspb.2012.3035","ieee":"D. Refardt, T. Bergmiller, and R. Kümmerli, “Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection,” Proceedings of the Royal Society of London Series B Biological Sciences, vol. 280, no. 1759. The Royal Society, 2013.","apa":"Refardt, D., Bergmiller, T., & Kümmerli, R. (2013). Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection. Proceedings of the Royal Society of London Series B Biological Sciences. The Royal Society. https://doi.org/10.1098/rspb.2012.3035","ista":"Refardt D, Bergmiller T, Kümmerli R. 2013. Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection. Proceedings of the Royal Society of London Series B Biological Sciences. 280(1759).","short":"D. Refardt, T. Bergmiller, R. Kümmerli, Proceedings of the Royal Society of London Series B Biological Sciences 280 (2013).","mla":"Refardt, Dominik, et al. “Altruism Can Evolve When Relatedness Is Low: Evidence from Bacteria Committing Suicide upon Phage Infection.” Proceedings of the Royal Society of London Series B Biological Sciences, vol. 280, no. 1759, The Royal Society, 2013, doi:10.1098/rspb.2012.3035.","chicago":"Refardt, Dominik, Tobias Bergmiller, and Rolf Kümmerli. “Altruism Can Evolve When Relatedness Is Low: Evidence from Bacteria Committing Suicide upon Phage Infection.” Proceedings of the Royal Society of London Series B Biological Sciences. The Royal Society, 2013. https://doi.org/10.1098/rspb.2012.3035."},"publication":"Proceedings of the Royal Society of London Series B Biological Sciences","article_type":"original","date_published":"2013-05-22T00:00:00Z"},{"oa":1,"citation":{"short":"D. Refardt, T. Bergmiller, R. Kümmerli, (2013).","mla":"Refardt, Dominik, et al. Data from: Altruism Can Evolve When Relatedness Is Low: Evidence from Bacteria Committing Suicide upon Phage Infection. Dryad, 2013, doi:10.5061/dryad.b1q2n.","chicago":"Refardt, Dominik, Tobias Bergmiller, and Rolf Kümmerli. “Data from: Altruism Can Evolve When Relatedness Is Low: Evidence from Bacteria Committing Suicide upon Phage Infection.” Dryad, 2013. https://doi.org/10.5061/dryad.b1q2n.","ama":"Refardt D, Bergmiller T, Kümmerli R. Data from: Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection. 2013. doi:10.5061/dryad.b1q2n","ieee":"D. Refardt, T. Bergmiller, and R. Kümmerli, “Data from: Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection.” Dryad, 2013.","apa":"Refardt, D., Bergmiller, T., & Kümmerli, R. (2013). Data from: Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection. Dryad. https://doi.org/10.5061/dryad.b1q2n","ista":"Refardt D, Bergmiller T, Kümmerli R. 2013. Data from: Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection, Dryad, 10.5061/dryad.b1q2n."},"main_file_link":[{"url":"https://doi.org/10.5061/dryad.b1q2n","open_access":"1"}],"date_published":"2013-03-21T00:00:00Z","doi":"10.5061/dryad.b1q2n","article_processing_charge":"No","day":"21","month":"03","department":[{"_id":"CaGu"}],"publisher":"Dryad","title":"Data from: Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection","status":"public","_id":"9751","year":"2013","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","oa_version":"Published Version","date_created":"2021-07-30T08:08:09Z","date_updated":"2023-10-18T06:43:22Z","related_material":{"record":[{"id":"2853","relation":"used_in_publication","status":"public"}]},"author":[{"full_name":"Refardt, Dominik","last_name":"Refardt","first_name":"Dominik"},{"orcid":"0000-0001-5396-4346","id":"2C471CFA-F248-11E8-B48F-1D18A9856A87","last_name":"Bergmiller","first_name":"Tobias","full_name":"Bergmiller, Tobias"},{"full_name":"Kümmerli, Rolf","last_name":"Kümmerli","first_name":"Rolf"}],"type":"research_data_reference","abstract":[{"lang":"eng","text":"High relatedness among interacting individuals has generally been considered a precondition for the evolution of altruism. However, kin-selection theory also predicts the evolution of altruism when relatedness is low, as long as the cost of the altruistic act is minor compared to its benefit. Here, we demonstrate evidence for a low-cost altruistic act in bacteria. We investigated Escherichia coli responding to the attack of an obligately lytic phage by committing suicide in order to prevent parasite transmission to nearby relatives. We found that bacterial suicide provides large benefits to survivors at marginal costs to committers. The cost of suicide was low because infected cells are moribund, rapidly dying upon phage infection, such that no more opportunity for reproduction remains. As a consequence of its marginal cost, host suicide was selectively favoured even when relatedness between committers and survivors approached zero. Altogether, our findings demonstrate that low-cost suicide can evolve with ease, represents an effective host-defence strategy, and seems to be widespread among microbes. Moreover, low-cost suicide might also occur in higher organisms as exemplified by infected social insect workers leaving the colony to die in isolation."}]},{"day":"22","month":"05","article_processing_charge":"No","publication_identifier":{"issn":["0896-6273"]},"language":[{"iso":"eng"}],"doi":"10.1016/j.neuron.2013.03.022","date_published":"2013-05-22T00:00:00Z","quality_controlled":"1","article_type":"original","page":"673-686","publication":"Neuron","citation":{"ama":"Joo WJ, Sweeney LB, Liang L, Luo L. Linking cell fate, trajectory choice, and target selection: Genetic analysis of sema-2b in olfactory axon targeting. Neuron. 2013;78(4):673-686. doi:10.1016/j.neuron.2013.03.022","ista":"Joo WJ, Sweeney LB, Liang L, Luo L. 2013. Linking cell fate, trajectory choice, and target selection: Genetic analysis of sema-2b in olfactory axon targeting. Neuron. 78(4), 673–686.","apa":"Joo, W. J., Sweeney, L. B., Liang, L., & Luo, L. (2013). Linking cell fate, trajectory choice, and target selection: Genetic analysis of sema-2b in olfactory axon targeting. Neuron. Elsevier. https://doi.org/10.1016/j.neuron.2013.03.022","ieee":"W. J. Joo, L. B. Sweeney, L. Liang, and L. Luo, “Linking cell fate, trajectory choice, and target selection: Genetic analysis of sema-2b in olfactory axon targeting,” Neuron, vol. 78, no. 4. Elsevier, pp. 673–686, 2013.","mla":"Joo, William J., et al. “Linking Cell Fate, Trajectory Choice, and Target Selection: Genetic Analysis of Sema-2b in Olfactory Axon Targeting.” Neuron, vol. 78, no. 4, Elsevier, 2013, pp. 673–86, doi:10.1016/j.neuron.2013.03.022.","short":"W.J. Joo, L.B. Sweeney, L. Liang, L. Luo, Neuron 78 (2013) 673–686.","chicago":"Joo, William J., Lora B. Sweeney, Liang Liang, and Liqun Luo. “Linking Cell Fate, Trajectory Choice, and Target Selection: Genetic Analysis of Sema-2b in Olfactory Axon Targeting.” Neuron. Elsevier, 2013. https://doi.org/10.1016/j.neuron.2013.03.022."},"extern":"1","abstract":[{"text":"Neural circuit assembly requires selection of specific cell fates, axonal trajectories, and synaptic targets. By analyzing the function of a secreted semaphorin, Sema-2b, in Drosophila olfactory receptor neuron (ORN) development, we identified multiple molecular and cellular mechanisms that link these events. Notch signaling limits Sema-2b expression to ventromedial ORN classes, within which Sema-2b cell-autonomously sensitizes ORN axons to external semaphorins. Central-brain-derived Sema-2a and Sema-2b attract Sema-2b-expressing axons to the ventromedial trajectory. In addition, Sema-2b/PlexB-mediated axon-axon interactions consolidate this trajectory choice and promote ventromedial axon-bundle formation. Selecting the correct developmental trajectory is ultimately essential for proper target choice. These findings demonstrate that Sema-2b couples ORN axon guidance to postsynaptic target neuron dendrite patterning well before the final target selection phase, and exemplify how a single guidance molecule can drive consecutive stages of neural circuit assembly with the help of sophisticated spatial and temporal regulation.","lang":"eng"}],"issue":"4","type":"journal_article","date_created":"2020-04-30T13:19:59Z","date_updated":"2024-01-31T10:15:25Z","oa_version":"None","volume":78,"author":[{"full_name":"Joo, William J.","last_name":"Joo","first_name":"William J."},{"orcid":"0000-0001-9242-5601","id":"56BE8254-C4F0-11E9-8E45-0B23E6697425","last_name":"Sweeney","first_name":"Lora Beatrice Jaeger","full_name":"Sweeney, Lora Beatrice Jaeger"},{"last_name":"Liang","first_name":"Liang","full_name":"Liang, Liang"},{"first_name":"Liqun","last_name":"Luo","full_name":"Luo, Liqun"}],"publication_status":"published","status":"public","title":"Linking cell fate, trajectory choice, and target selection: Genetic analysis of sema-2b in olfactory axon targeting","publisher":"Elsevier","intvolume":" 78","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"7785","year":"2013"},{"author":[{"full_name":"Dziembowski, Stefan","last_name":"Dziembowski","first_name":"Stefan"},{"last_name":"Faust","first_name":"Sebastian","full_name":"Faust, Sebastian"},{"last_name":"Kolmogorov","first_name":"Vladimir","id":"3D50B0BA-F248-11E8-B48F-1D18A9856A87","full_name":"Kolmogorov, Vladimir"},{"full_name":"Pietrzak, Krzysztof Z","orcid":"0000-0002-9139-1654","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","last_name":"Pietrzak","first_name":"Krzysztof Z"}],"related_material":{"record":[{"id":"1675","relation":"later_version","status":"public"}]},"pubrep_id":"671","date_updated":"2024-03-20T08:31:49Z","date_created":"2018-12-11T11:56:42Z","file":[{"checksum":"37b61637b62fc079d9141c59d9f1a94f","date_updated":"2020-07-14T12:45:36Z","date_created":"2018-12-12T10:16:11Z","file_id":"5197","relation":"main_file","creator":"system","file_size":405870,"content_type":"application/pdf","access_level":"open_access","file_name":"IST-2016-671-v1+1_796.pdf"}],"oa_version":"Published Version","_id":"2274","year":"2013","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","status":"public","title":"Proofs of Space","ddc":["530"],"department":[{"_id":"VlKo"},{"_id":"KrPi"}],"publisher":"IST Austria","abstract":[{"text":"Proofs of work (PoW) have been suggested by Dwork and Naor (Crypto'92) as protection to a shared resource. The basic idea is to ask the service requestor to dedicate some non-trivial amount of computational work to every request. The original applications included prevention of spam and protection against denial of service attacks. More recently, PoWs have been used to prevent double spending in the Bitcoin digital currency system.\r\n\r\nIn this work, we put forward an alternative concept for PoWs -- so-called proofs of space (PoS), where a service requestor must dedicate a significant amount of disk space as opposed to computation. We construct secure PoS schemes in the random oracle model, using graphs with high "pebbling complexity" and Merkle hash-trees. ","lang":"eng"}],"file_date_updated":"2020-07-14T12:45:36Z","publist_id":"4670","type":"report","date_published":"2013-11-28T00:00:00Z","language":[{"iso":"eng"}],"oa":1,"citation":{"ieee":"S. Dziembowski, S. Faust, V. Kolmogorov, and K. Z. Pietrzak, Proofs of Space. IST Austria, 2013.","apa":"Dziembowski, S., Faust, S., Kolmogorov, V., & Pietrzak, K. Z. (2013). Proofs of Space. IST Austria.","ista":"Dziembowski S, Faust S, Kolmogorov V, Pietrzak KZ. 2013. Proofs of Space, IST Austria,p.","ama":"Dziembowski S, Faust S, Kolmogorov V, Pietrzak KZ. Proofs of Space. IST Austria; 2013.","chicago":"Dziembowski, Stefan, Sebastian Faust, Vladimir Kolmogorov, and Krzysztof Z Pietrzak. Proofs of Space. IST Austria, 2013.","short":"S. Dziembowski, S. Faust, V. Kolmogorov, K.Z. Pietrzak, Proofs of Space, IST Austria, 2013.","mla":"Dziembowski, Stefan, et al. Proofs of Space. IST Austria, 2013."},"day":"28","month":"11","has_accepted_license":"1","scopus_import":1},{"article_number":"2604","extern":"1","publisher":"Royal Society of Chemistry","publication_status":"published","year":"2013","volume":9,"date_created":"2024-03-21T07:58:57Z","date_updated":"2024-03-25T11:45:46Z","author":[{"full_name":"Woehrmann, Marcos H.","last_name":"Woehrmann","first_name":"Marcos H."},{"first_name":"Walter M.","last_name":"Bray","full_name":"Bray, Walter M."},{"first_name":"James K.","last_name":"Durbin","full_name":"Durbin, James K."},{"full_name":"Nisam, Sean C.","last_name":"Nisam","first_name":"Sean C."},{"id":"6437c950-2a03-11ee-914d-d6476dd7b75c","first_name":"Alicia Kathleen","last_name":"Michael","full_name":"Michael, Alicia Kathleen"},{"last_name":"Glassey","first_name":"Emerson","full_name":"Glassey, Emerson"},{"first_name":"Joshua M.","last_name":"Stuart","full_name":"Stuart, Joshua M."},{"full_name":"Lokey, R. Scott","last_name":"Lokey","first_name":"R. Scott"}],"publication_identifier":{"eissn":["1742-2051"],"issn":["1742-206X"]},"month":"08","quality_controlled":"1","language":[{"iso":"eng"}],"doi":"10.1039/c3mb70245f","type":"journal_article","issue":"11","abstract":[{"lang":"eng","text":"Cytological profiling (CP) is an unbiased image-based screening technique that uses automated microscopy and image analysis to profile compounds based on numerous quantifiable phenotypic features. We used CP to evaluate a library of nearly 500 compounds with documented mechanisms of action (MOAs) spanning a wide range of biological pathways. We developed informatics techniques for generating dosage-independent phenotypic “fingerprints” for each compound, and for quantifying the likelihood that a compound's CP fingerprint corresponds to its annotated MOA. We identified groups of features that distinguish classes with closely related phenotypes, such as microtubule poisons vs. HSP90 inhibitors, and DNA synthesis vs. proteasome inhibitors. We tested several cases in which cytological profiles indicated novel mechanisms, including a tyrphostin kinase inhibitor involved in mitochondrial uncoupling, novel microtubule poisons, and a nominal PPAR-gamma ligand that acts as a proteasome inhibitor, using independent biochemical assays to confirm the MOAs predicted by the CP signatures. We also applied maximal-information statistics to identify correlations between cytological features and kinase inhibitory activities by combining the CP fingerprints of 24 kinase inhibitors with published data on their specificities against a diverse panel of kinases. The resulting analysis suggests a strategy for probing the biological functions of specific kinases by compiling cytological data from inhibitors of varying specificities."}],"intvolume":" 9","status":"public","title":"Large-scale cytological profiling for functional analysis of bioactive compounds","_id":"15162","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"None","keyword":["Molecular Biology","Biotechnology"],"scopus_import":"1","article_processing_charge":"No","day":"20","article_type":"original","citation":{"ama":"Woehrmann MH, Bray WM, Durbin JK, et al. Large-scale cytological profiling for functional analysis of bioactive compounds. Molecular BioSystems. 2013;9(11). doi:10.1039/c3mb70245f","ista":"Woehrmann MH, Bray WM, Durbin JK, Nisam SC, Michael AK, Glassey E, Stuart JM, Lokey RS. 2013. Large-scale cytological profiling for functional analysis of bioactive compounds. Molecular BioSystems. 9(11), 2604.","ieee":"M. H. Woehrmann et al., “Large-scale cytological profiling for functional analysis of bioactive compounds,” Molecular BioSystems, vol. 9, no. 11. Royal Society of Chemistry, 2013.","apa":"Woehrmann, M. H., Bray, W. M., Durbin, J. K., Nisam, S. C., Michael, A. K., Glassey, E., … Lokey, R. S. (2013). Large-scale cytological profiling for functional analysis of bioactive compounds. Molecular BioSystems. Royal Society of Chemistry. https://doi.org/10.1039/c3mb70245f","mla":"Woehrmann, Marcos H., et al. “Large-Scale Cytological Profiling for Functional Analysis of Bioactive Compounds.” Molecular BioSystems, vol. 9, no. 11, 2604, Royal Society of Chemistry, 2013, doi:10.1039/c3mb70245f.","short":"M.H. Woehrmann, W.M. Bray, J.K. Durbin, S.C. Nisam, A.K. Michael, E. Glassey, J.M. Stuart, R.S. Lokey, Molecular BioSystems 9 (2013).","chicago":"Woehrmann, Marcos H., Walter M. Bray, James K. Durbin, Sean C. Nisam, Alicia K. Michael, Emerson Glassey, Joshua M. Stuart, and R. Scott Lokey. “Large-Scale Cytological Profiling for Functional Analysis of Bioactive Compounds.” Molecular BioSystems. Royal Society of Chemistry, 2013. https://doi.org/10.1039/c3mb70245f."},"publication":"Molecular BioSystems","date_published":"2013-08-20T00:00:00Z"},{"quality_controlled":"1","oa":1,"external_id":{"pmid":["23215334"],"arxiv":["1206.3528"]},"main_file_link":[{"url":"https://arxiv.org/abs/1206.3528","open_access":"1"}],"language":[{"iso":"eng"}],"doi":"10.1103/physrevlett.109.188101","month":"10","publication_identifier":{"issn":["0031-9007"],"eissn":["1079-7114"]},"publication_status":"published","publisher":"American Physical Society","year":"2012","pmid":1,"date_updated":"2021-11-29T14:29:25Z","date_created":"2021-11-29T14:08:00Z","volume":109,"author":[{"full_name":"Šarić, Anđela","first_name":"Anđela","last_name":"Šarić","id":"bf63d406-f056-11eb-b41d-f263a6566d8b","orcid":"0000-0002-7854-2139"},{"last_name":"Cacciuto","first_name":"Angelo","full_name":"Cacciuto, Angelo"}],"article_number":"188101","extern":"1","article_type":"original","publication":"Physical Review Letters","citation":{"chicago":"Šarić, Anđela, and Angelo Cacciuto. “Mechanism of Membrane Tube Formation Induced by Adhesive Nanocomponents.” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/physrevlett.109.188101.","mla":"Šarić, Anđela, and Angelo Cacciuto. “Mechanism of Membrane Tube Formation Induced by Adhesive Nanocomponents.” Physical Review Letters, vol. 109, no. 18, 188101, American Physical Society, 2012, doi:10.1103/physrevlett.109.188101.","short":"A. Šarić, A. Cacciuto, Physical Review Letters 109 (2012).","ista":"Šarić A, Cacciuto A. 2012. Mechanism of membrane tube formation induced by adhesive nanocomponents. Physical Review Letters. 109(18), 188101.","ieee":"A. Šarić and A. Cacciuto, “Mechanism of membrane tube formation induced by adhesive nanocomponents,” Physical Review Letters, vol. 109, no. 18. American Physical Society, 2012.","apa":"Šarić, A., & Cacciuto, A. (2012). Mechanism of membrane tube formation induced by adhesive nanocomponents. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.109.188101","ama":"Šarić A, Cacciuto A. Mechanism of membrane tube formation induced by adhesive nanocomponents. Physical Review Letters. 2012;109(18). doi:10.1103/physrevlett.109.188101"},"date_published":"2012-10-31T00:00:00Z","keyword":["general physics and astronomy"],"scopus_import":"1","day":"31","article_processing_charge":"No","status":"public","title":"Mechanism of membrane tube formation induced by adhesive nanocomponents","intvolume":" 109","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","_id":"10387","oa_version":"Preprint","type":"journal_article","abstract":[{"lang":"eng","text":"We report numerical simulations of membrane tubulation driven by large colloidal particles. Using Monte Carlo simulations we study how the process depends on particle size and binding strength, and present accurate free energy calculations to sort out how tube formation compares with the competing budding process. We find that tube formation is a result of the collective behavior of the particles adhering on the surface, and it occurs for binding strengths that are smaller than those required for budding. We also find that long linear aggregates of particles forming on the membrane surface act as nucleation seeds for tubulation by lowering the free energy barrier associated to the process."}],"issue":"18"},{"language":[{"iso":"eng"}],"doi":"10.1103/physrevlett.108.118101","quality_controlled":"1","external_id":{"pmid":["22540513"],"arxiv":["1201.0036"]},"oa":1,"main_file_link":[{"url":"https://arxiv.org/abs/1201.0036","open_access":"1"}],"month":"03","publication_identifier":{"issn":["0031-9007"],"eissn":["1079-7114"]},"date_created":"2021-11-29T14:30:05Z","date_updated":"2021-11-29T15:12:13Z","volume":108,"author":[{"full_name":"Šarić, Anđela","orcid":"0000-0002-7854-2139","id":"bf63d406-f056-11eb-b41d-f263a6566d8b","last_name":"Šarić","first_name":"Anđela"},{"last_name":"Cacciuto","first_name":"Angelo","full_name":"Cacciuto, Angelo"}],"publication_status":"published","publisher":"American Physical Society","year":"2012","acknowledgement":"This work was supported by the National Science Foundation under Career Grant No. DMR-0846426.\r\n","pmid":1,"extern":"1","article_number":"118101","date_published":"2012-03-14T00:00:00Z","article_type":"original","publication":"Physical Review Letters","citation":{"ama":"Šarić A, Cacciuto A. Fluid membranes can drive linear aggregation of adsorbed spherical nanoparticles. Physical Review Letters. 2012;108(11). doi:10.1103/physrevlett.108.118101","apa":"Šarić, A., & Cacciuto, A. (2012). Fluid membranes can drive linear aggregation of adsorbed spherical nanoparticles. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.108.118101","ieee":"A. Šarić and A. Cacciuto, “Fluid membranes can drive linear aggregation of adsorbed spherical nanoparticles,” Physical Review Letters, vol. 108, no. 11. American Physical Society, 2012.","ista":"Šarić A, Cacciuto A. 2012. Fluid membranes can drive linear aggregation of adsorbed spherical nanoparticles. Physical Review Letters. 108(11), 118101.","short":"A. Šarić, A. Cacciuto, Physical Review Letters 108 (2012).","mla":"Šarić, Anđela, and Angelo Cacciuto. “Fluid Membranes Can Drive Linear Aggregation of Adsorbed Spherical Nanoparticles.” Physical Review Letters, vol. 108, no. 11, 118101, American Physical Society, 2012, doi:10.1103/physrevlett.108.118101.","chicago":"Šarić, Anđela, and Angelo Cacciuto. “Fluid Membranes Can Drive Linear Aggregation of Adsorbed Spherical Nanoparticles.” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/physrevlett.108.118101."},"day":"14","article_processing_charge":"No","keyword":["general physics and astronomy"],"scopus_import":"1","oa_version":"Preprint","title":"Fluid membranes can drive linear aggregation of adsorbed spherical nanoparticles","status":"public","intvolume":" 108","_id":"10388","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","abstract":[{"text":"Using computer simulations, we show that lipid membranes can mediate linear aggregation of spherical nanoparticles binding to it for a wide range of biologically relevant bending rigidities. This result is in net contrast with the isotropic aggregation of nanoparticles on fluid interfaces or the expected clustering of isotropic insertions in biological membranes. We present a phase diagram indicating where linear aggregation is expected and compute explicitly the free-energy barriers associated with linear and isotropic aggregation. Finally, we provide simple scaling arguments to explain this phenomenology.","lang":"eng"}],"issue":"11","type":"journal_article"},{"day":"01","month":"10","article_processing_charge":"No","publication":"The Lancet","citation":{"ieee":"B. Erne, M. Graff, W. Klemm, J. G. Danzl, and G. Leschber, “Bulla in the lung,” The Lancet, vol. 380, no. 9849. Elsevier, 2012.","apa":"Erne, B., Graff, M., Klemm, W., Danzl, J. G., & Leschber, G. (2012). Bulla in the lung. The Lancet. Elsevier. https://doi.org/10.1016/S0140-6736(12)60690-4","ista":"Erne B, Graff M, Klemm W, Danzl JG, Leschber G. 2012. Bulla in the lung. The Lancet. 380(9849).","ama":"Erne B, Graff M, Klemm W, Danzl JG, Leschber G. Bulla in the lung. The Lancet. 2012;380(9849). doi:10.1016/S0140-6736(12)60690-4","chicago":"Erne, Barbara, Mareike Graff, Wolfram Klemm, Johann G Danzl, and Gunda Leschber. “Bulla in the Lung.” The Lancet. Elsevier, 2012. https://doi.org/10.1016/S0140-6736(12)60690-4.","short":"B. Erne, M. Graff, W. Klemm, J.G. Danzl, G. Leschber, The Lancet 380 (2012).","mla":"Erne, Barbara, et al. “Bulla in the Lung.” The Lancet, vol. 380, no. 9849, Elsevier, 2012, doi:10.1016/S0140-6736(12)60690-4."},"language":[{"iso":"eng"}],"date_published":"2012-10-01T00:00:00Z","doi":"10.1016/S0140-6736(12)60690-4","type":"journal_article","extern":"1","abstract":[{"lang":"eng","text":"In July, 2011, a 32-year-old man presented with thoracic pain radiating to the left arm and upper dorsum, shortness of breath, and palpitations. He had had upper back tension for 6 months. Medical history was unremarkable apart from moderate nicotine use (two pack-years). Echocardiography, electrocardiography, and laboratory tests were unremarkable, excluding a cardiac event. CT of the chest after chest radiography showed a large bulla of 16 cm diameter in the right hemithorax (figure A). We did not detect radiological evidence of underlying pulmonary disease. The bulla wall was unremarkable and no structures were seen within the bulla."}],"publist_id":"6333","issue":"9849","publication_status":"published","title":"Bulla in the lung","status":"public","intvolume":" 380","publisher":"Elsevier","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"1055","year":"2012","acknowledgement":"We thank the interdisciplinary team at the ELK Berlin Chest Hospital.","date_updated":"2021-01-12T06:47:57Z","date_created":"2018-12-11T11:49:54Z","oa_version":"None","volume":380,"author":[{"full_name":"Erne, Barbara","first_name":"Barbara","last_name":"Erne"},{"full_name":"Graff, Mareike","first_name":"Mareike","last_name":"Graff"},{"full_name":"Klemm, Wolfram","first_name":"Wolfram","last_name":"Klemm"},{"full_name":"Danzl, Johann G","last_name":"Danzl","first_name":"Johann G","orcid":"0000-0001-8559-3973","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Leschber, Gunda","first_name":"Gunda","last_name":"Leschber"}]},{"type":"journal_article","abstract":[{"text":"We prepare and study a metastable attractive Mott-insulator state formed with bosonic atoms in a three-dimensional optical lattice. Starting from a Mott insulator with Cs atoms at weak repulsive interactions, we use a magnetic Feshbach resonance to tune the interactions to large attractive values and produce a metastable state pinned by attractive interactions with a lifetime on the order of 10 s. We probe the (de)excitation spectrum via lattice modulation spectroscopy, measuring the interaction dependence of two- and three-body bound-state energies. As a result of increased on-site three-body loss we observe resonance broadening and suppression of tunneling processes that produce three-body occupation.","lang":"eng"}],"issue":"21","publist_id":"6334","extern":"1","year":"2012","_id":"1056","acknowledgement":"We are indebted to R. Grimm for generous support. We thank J. von Stecher, P. Johnson, and E. Tiesinga for fruitful discussions. We gratefully acknowledge funding by the Austrian Science Fund (FWF) within Project No. I153-N16 and within the framework of the European Science Foundation (ESF) EuroQUASAR collective research project QuDeGPM, and by the European Research Council (ERC) under Project No. 278417.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Preparation and spectroscopy of a metastable mott-insulator state with attractive interactions","publication_status":"published","status":"public","publisher":"American Physical Society","intvolume":" 108","author":[{"full_name":"Mark, Manfred","first_name":"Manfred","last_name":"Mark"},{"first_name":"Elmar","last_name":"Haller","full_name":"Haller, Elmar"},{"full_name":"Lauber, Katharina","first_name":"Katharina","last_name":"Lauber"},{"full_name":"Danzl, Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8559-3973","first_name":"Johann G","last_name":"Danzl"},{"last_name":"Janisch","first_name":"Alexander","full_name":"Janisch, Alexander"},{"first_name":"Hans","last_name":"Büchler","full_name":"Büchler, Hans"},{"last_name":"Daley","first_name":"Andrew","full_name":"Daley, Andrew"},{"full_name":"Nägerl, Hanns","last_name":"Nägerl","first_name":"Hanns"}],"date_created":"2018-12-11T11:49:55Z","date_updated":"2021-01-12T06:47:58Z","volume":108,"oa_version":"Preprint","month":"05","day":"25","article_processing_charge":"No","publication":"Physical Review Letters","citation":{"ama":"Mark M, Haller E, Lauber K, et al. Preparation and spectroscopy of a metastable mott-insulator state with attractive interactions. Physical Review Letters. 2012;108(21). doi:10.1103/PhysRevLett.108.215302","apa":"Mark, M., Haller, E., Lauber, K., Danzl, J. G., Janisch, A., Büchler, H., … Nägerl, H. (2012). Preparation and spectroscopy of a metastable mott-insulator state with attractive interactions. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.108.215302","ieee":"M. Mark et al., “Preparation and spectroscopy of a metastable mott-insulator state with attractive interactions,” Physical Review Letters, vol. 108, no. 21. American Physical Society, 2012.","ista":"Mark M, Haller E, Lauber K, Danzl JG, Janisch A, Büchler H, Daley A, Nägerl H. 2012. Preparation and spectroscopy of a metastable mott-insulator state with attractive interactions. Physical Review Letters. 108(21).","short":"M. Mark, E. Haller, K. Lauber, J.G. Danzl, A. Janisch, H. Büchler, A. Daley, H. Nägerl, Physical Review Letters 108 (2012).","mla":"Mark, Manfred, et al. “Preparation and Spectroscopy of a Metastable Mott-Insulator State with Attractive Interactions.” Physical Review Letters, vol. 108, no. 21, American Physical Society, 2012, doi:10.1103/PhysRevLett.108.215302.","chicago":"Mark, Manfred, Elmar Haller, Katharina Lauber, Johann G Danzl, Alexander Janisch, Hans Büchler, Andrew Daley, and Hanns Nägerl. “Preparation and Spectroscopy of a Metastable Mott-Insulator State with Attractive Interactions.” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/PhysRevLett.108.215302."},"external_id":{"arxiv":["1201.1008"]},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1201.1008"}],"oa":1,"doi":"10.1103/PhysRevLett.108.215302","date_published":"2012-05-25T00:00:00Z","language":[{"iso":"eng"}]},{"year":"2012","acknowledgement":"This work was supported by the Center for Emergent Superconductivity, an Energy Frontier Research Center funded by the U.S. DOE, Office of Science, under Award No. DE-AC0298CH1088.","publisher":"American Physical Society","publication_status":"published","author":[{"full_name":"Polshyn, Hryhoriy","last_name":"Polshyn","first_name":"Hryhoriy","orcid":"0000-0001-8223-8896","id":"edfc7cb1-526e-11ec-b05a-e6ecc27e4e48"},{"last_name":"Budakian","first_name":"Raffi","full_name":"Budakian, Raffi"}],"volume":57,"date_updated":"2022-02-08T10:48:01Z","date_created":"2022-02-08T10:39:08Z","article_number":"X21.00008","extern":"1","main_file_link":[{"url":"https://meetings.aps.org/Meeting/MAR12/Event/167014","open_access":"1"}],"oa":1,"quality_controlled":"1","conference":{"end_date":"2012-03-02","location":"Boston, MA, United States","start_date":"2012-02-27","name":"APS: American Physical Society"},"language":[{"iso":"eng"}],"publication_identifier":{"issn":["0003-0503"]},"month":"02","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","_id":"10750","intvolume":" 57","status":"public","title":"Cantilever torque magnetometry study of multiply connected BSCCO arrays near Tc","oa_version":"Published Version","type":"conference","alternative_title":["Bulletin of the American Physical Society"],"issue":"1","abstract":[{"lang":"eng","text":"The goal of this work is to study the superconducting coherence length in the fluctuation regime in cuprate superconductors. In this work we present cantilever torque magnetometry measurements of micron-size BSCCO flakes patterned with arrays of nanometer scale rings or holes. Using ultrasensitive dynamic torque magnetometry, oscillations in magnetization are observed near Tc as a function of the applied magnetic flux threading the array. Special effort was made to detect the oscillations in magnetization at temperatures above Tc, where the Nernst effect and magnetization measurements suggest the possibility of pairing. To constrain the magnitude of the coherence length in the fluctuation regime, we will present the dependence of the amplitude of the h/2e period oscillations as a function of temperature and hole size."}],"citation":{"ieee":"H. Polshyn and R. Budakian, “Cantilever torque magnetometry study of multiply connected BSCCO arrays near Tc,” in APS March Meeting 2012, Boston, MA, United States, 2012, vol. 57, no. 1.","apa":"Polshyn, H., & Budakian, R. (2012). Cantilever torque magnetometry study of multiply connected BSCCO arrays near Tc. In APS March Meeting 2012 (Vol. 57). Boston, MA, United States: American Physical Society.","ista":"Polshyn H, Budakian R. 2012. Cantilever torque magnetometry study of multiply connected BSCCO arrays near Tc. APS March Meeting 2012. APS: American Physical Society, Bulletin of the American Physical Society, vol. 57, X21.00008.","ama":"Polshyn H, Budakian R. Cantilever torque magnetometry study of multiply connected BSCCO arrays near Tc. In: APS March Meeting 2012. Vol 57. American Physical Society; 2012.","chicago":"Polshyn, Hryhoriy, and Raffi Budakian. “Cantilever Torque Magnetometry Study of Multiply Connected BSCCO Arrays near Tc.” In APS March Meeting 2012, Vol. 57. American Physical Society, 2012.","short":"H. Polshyn, R. Budakian, in:, APS March Meeting 2012, American Physical Society, 2012.","mla":"Polshyn, Hryhoriy, and Raffi Budakian. “Cantilever Torque Magnetometry Study of Multiply Connected BSCCO Arrays near Tc.” APS March Meeting 2012, vol. 57, no. 1, X21.00008, American Physical Society, 2012."},"publication":"APS March Meeting 2012","date_published":"2012-02-01T00:00:00Z","article_processing_charge":"No","day":"01"},{"day":"23","month":"07","article_processing_charge":"No","publication_identifier":{"eisbn":["9781461439035"],"isbn":["9781461439028"]},"scopus_import":"1","date_published":"2012-07-23T00:00:00Z","doi":"10.1007/978-1-4614-3903-5_6","language":[{"iso":"eng"}],"publication":"Adenosine","citation":{"ieee":"S. zur Nedden, A. S. Doney, and B. G. Frenguelli, “The double-edged sword: Gaining Adenosine at the expense of ATP. How to balance the books,” in Adenosine, 1st ed., S. Masino and D. Boison, Eds. New York: Springer, 2012, pp. 109–129.","apa":"zur Nedden, S., Doney, A. S., & Frenguelli, B. G. (2012). The double-edged sword: Gaining Adenosine at the expense of ATP. How to balance the books. In S. Masino & D. Boison (Eds.), Adenosine (1st ed., pp. 109–129). New York: Springer. https://doi.org/10.1007/978-1-4614-3903-5_6","ista":"zur Nedden S, Doney AS, Frenguelli BG. 2012.The double-edged sword: Gaining Adenosine at the expense of ATP. How to balance the books. In: Adenosine. , 109–129.","ama":"zur Nedden S, Doney AS, Frenguelli BG. The double-edged sword: Gaining Adenosine at the expense of ATP. How to balance the books. In: Masino S, Boison D, eds. Adenosine. 1st ed. New York: Springer; 2012:109-129. doi:10.1007/978-1-4614-3903-5_6","chicago":"Nedden, Stephanie zur, Alexander S. Doney, and Bruno G. Frenguelli. “The Double-Edged Sword: Gaining Adenosine at the Expense of ATP. How to Balance the Books.” In Adenosine, edited by Susan Masino and Detlev Boison, 1st ed., 109–29. New York: Springer, 2012. https://doi.org/10.1007/978-1-4614-3903-5_6.","short":"S. zur Nedden, A.S. Doney, B.G. Frenguelli, in:, S. Masino, D. Boison (Eds.), Adenosine, 1st ed., Springer, New York, 2012, pp. 109–129.","mla":"zur Nedden, Stephanie, et al. “The Double-Edged Sword: Gaining Adenosine at the Expense of ATP. How to Balance the Books.” Adenosine, edited by Susan Masino and Detlev Boison, 1st ed., Springer, 2012, pp. 109–29, doi:10.1007/978-1-4614-3903-5_6."},"quality_controlled":"1","page":"109-129","abstract":[{"text":"Under physiological conditions the brain, via the purine salvage pathway, reuses the preformed purine bases hypoxanthine, derived from ATP degradation, and adenine (Ade), derived from polyamine synthesis, to restore its ATP pool. However, the massive degradation of ATP during ischemia, although providing valuable neuroprotective adenosine, results in the accumulation and loss of diffusible purine metabolites and thereby leads to a protracted reduction in the post-ischemic ATP pool size. In vivo, this may both limit the ability to deploy ATP-dependent reparative mechanisms and reduce the subsequent availability of adenosine, whilst in brain slices results in tissue with substantially lower levels of ATP than in vivo. In the present review, we describe the mechanisms by which brain tissue replenishes its ATP, how this can be improved with the clinically tolerated chemicals D-ribose and adenine, and the functional, and potential therapeutic, implications of doing so.","lang":"eng"}],"type":"book_chapter","place":"New York","author":[{"id":"3C77F464-F248-11E8-B48F-1D18A9856A87","first_name":"Stephanie","last_name":"zur Nedden","full_name":"zur Nedden, Stephanie"},{"full_name":"Doney, Alexander S.","last_name":"Doney","first_name":"Alexander S."},{"first_name":"Bruno G.","last_name":"Frenguelli","full_name":"Frenguelli, Bruno G."}],"edition":"1","date_updated":"2022-06-21T11:51:58Z","date_created":"2022-03-21T07:16:12Z","oa_version":"None","acknowledgement":"We are grateful to Research into Ageing/Ageing UK and The Dunhill Trust for funding SzN’s graduate studies, and to Prof Nicholas Dale for his valuable input.","_id":"10896","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2012","title":"The double-edged sword: Gaining Adenosine at the expense of ATP. How to balance the books","status":"public","publication_status":"published","department":[{"_id":"HaJa"}],"publisher":"Springer","editor":[{"last_name":"Masino","first_name":"Susan","full_name":"Masino, Susan"},{"last_name":"Boison","first_name":"Detlev","full_name":"Boison, Detlev"}]},{"oa_version":"None","intvolume":" 24","status":"public","title":"Outfits for different occasions: tissue-specific roles of Nuclear Envelope proteins","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","_id":"11089","issue":"6","abstract":[{"text":"The Nuclear Envelope (NE) contains over 100 different proteins that associate with nuclear components such as chromatin, the lamina and the transcription machinery. Mutations in genes encoding NE proteins have been shown to result in tissue-specific defects and disease, suggesting cell-type specific differences in NE composition and function. Consistent with these observations, recent studies have revealed unexpected functions for numerous NE associated proteins during cell differentiation and development. Here we review the latest insights into the roles played by the NE in cell differentiation, development, disease and aging, focusing primarily on inner nuclear membrane (INM) proteins and nuclear pore components.","lang":"eng"}],"type":"journal_article","date_published":"2012-12-01T00:00:00Z","page":"775-783","article_type":"original","citation":{"chicago":"Gomez-Cavazos, J Sebastian, and Martin Hetzer. “Outfits for Different Occasions: Tissue-Specific Roles of Nuclear Envelope Proteins.” Current Opinion in Cell Biology. Elsevier, 2012. https://doi.org/10.1016/j.ceb.2012.08.008.","mla":"Gomez-Cavazos, J. Sebastian, and Martin Hetzer. “Outfits for Different Occasions: Tissue-Specific Roles of Nuclear Envelope Proteins.” Current Opinion in Cell Biology, vol. 24, no. 6, Elsevier, 2012, pp. 775–83, doi:10.1016/j.ceb.2012.08.008.","short":"J.S. Gomez-Cavazos, M. Hetzer, Current Opinion in Cell Biology 24 (2012) 775–783.","ista":"Gomez-Cavazos JS, Hetzer M. 2012. Outfits for different occasions: tissue-specific roles of Nuclear Envelope proteins. Current Opinion in Cell Biology. 24(6), 775–783.","ieee":"J. S. Gomez-Cavazos and M. Hetzer, “Outfits for different occasions: tissue-specific roles of Nuclear Envelope proteins,” Current Opinion in Cell Biology, vol. 24, no. 6. Elsevier, pp. 775–783, 2012.","apa":"Gomez-Cavazos, J. S., & Hetzer, M. (2012). Outfits for different occasions: tissue-specific roles of Nuclear Envelope proteins. Current Opinion in Cell Biology. Elsevier. https://doi.org/10.1016/j.ceb.2012.08.008","ama":"Gomez-Cavazos JS, Hetzer M. Outfits for different occasions: tissue-specific roles of Nuclear Envelope proteins. Current Opinion in Cell Biology. 2012;24(6):775-783. doi:10.1016/j.ceb.2012.08.008"},"publication":"Current Opinion in Cell Biology","article_processing_charge":"No","day":"01","keyword":["Cell Biology"],"scopus_import":"1","volume":24,"date_created":"2022-04-07T07:51:37Z","date_updated":"2022-07-18T08:38:47Z","author":[{"last_name":"Gomez-Cavazos","first_name":"J Sebastian","full_name":"Gomez-Cavazos, J Sebastian"},{"full_name":"HETZER, Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X","first_name":"Martin W","last_name":"HETZER"}],"publisher":"Elsevier","publication_status":"published","pmid":1,"year":"2012","extern":"1","language":[{"iso":"eng"}],"doi":"10.1016/j.ceb.2012.08.008","quality_controlled":"1","external_id":{"pmid":["22995343"]},"publication_identifier":{"issn":["0955-0674"]},"month":"12"},{"oa_version":"None","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","_id":"11091","status":"public","title":"Transient nuclear envelope rupturing during interphase in human cancer cells","intvolume":" 3","abstract":[{"lang":"eng","text":"Neoplastic cells are often characterized by specific morphological abnormalities of the nuclear envelope (NE), which have been used for cancer diagnosis for more than a century. The NE is a double phospholipid bilayer that encapsulates the nuclear genome, regulates all nuclear trafficking of RNAs and proteins and prevents the passive diffusion of macromolecules between the nucleoplasm and the cytoplasm. Whether there is a consequence to the proper functioning of the cell and loss of structural integrity of the nucleus remains unclear. Using live cell imaging, we characterize a phenomenon wherein nuclei of several proliferating human cancer cell lines become temporarily ruptured during interphase. Strikingly, NE rupturing was associated with the mislocalization of nucleoplasmic and cytoplasmic proteins and, in the most extreme cases, the entrapment of cytoplasmic organelles in the nuclear interior. In addition, we observed the formation of micronuclei-like structures during interphase and the movement of chromatin out of the nuclear space. The frequency of these NE rupturing events was higher in cells in which the nuclear lamina, a network of intermediate filaments providing mechanical support to the NE, was not properly formed. Our data uncover the existence of a NE instability that has the potential to change the genomic landscape of cancer cells."}],"issue":"1","type":"journal_article","date_published":"2012-01-01T00:00:00Z","publication":"Nucleus","citation":{"ista":"Vargas JD, Hatch EM, Anderson DJ, Hetzer M. 2012. Transient nuclear envelope rupturing during interphase in human cancer cells. Nucleus. 3(1), 88–100.","ieee":"J. D. Vargas, E. M. Hatch, D. J. Anderson, and M. Hetzer, “Transient nuclear envelope rupturing during interphase in human cancer cells,” Nucleus, vol. 3, no. 1. Taylor & Francis, pp. 88–100, 2012.","apa":"Vargas, J. D., Hatch, E. M., Anderson, D. J., & Hetzer, M. (2012). Transient nuclear envelope rupturing during interphase in human cancer cells. Nucleus. Taylor & Francis. https://doi.org/10.4161/nucl.18954","ama":"Vargas JD, Hatch EM, Anderson DJ, Hetzer M. Transient nuclear envelope rupturing during interphase in human cancer cells. Nucleus. 2012;3(1):88-100. doi:10.4161/nucl.18954","chicago":"Vargas, Jesse D., Emily M. Hatch, Daniel J. Anderson, and Martin Hetzer. “Transient Nuclear Envelope Rupturing during Interphase in Human Cancer Cells.” Nucleus. Taylor & Francis, 2012. https://doi.org/10.4161/nucl.18954.","mla":"Vargas, Jesse D., et al. “Transient Nuclear Envelope Rupturing during Interphase in Human Cancer Cells.” Nucleus, vol. 3, no. 1, Taylor & Francis, 2012, pp. 88–100, doi:10.4161/nucl.18954.","short":"J.D. Vargas, E.M. Hatch, D.J. Anderson, M. Hetzer, Nucleus 3 (2012) 88–100."},"article_type":"original","page":"88-100","day":"01","article_processing_charge":"No","scopus_import":"1","keyword":["Cell Biology"],"author":[{"first_name":"Jesse D.","last_name":"Vargas","full_name":"Vargas, Jesse D."},{"full_name":"Hatch, Emily M.","last_name":"Hatch","first_name":"Emily M."},{"full_name":"Anderson, Daniel J.","first_name":"Daniel J.","last_name":"Anderson"},{"first_name":"Martin W","last_name":"HETZER","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X","full_name":"HETZER, Martin W"}],"date_created":"2022-04-07T07:51:53Z","date_updated":"2022-07-18T08:52:53Z","volume":3,"year":"2012","pmid":1,"publication_status":"published","publisher":"Taylor & Francis","extern":"1","doi":"10.4161/nucl.18954","language":[{"iso":"eng"}],"external_id":{"pmid":["22567193"]},"quality_controlled":"1","month":"01","publication_identifier":{"issn":["1949-1034"],"eissn":["1949-1042"]}},{"date_published":"2012-01-19T00:00:00Z","article_type":"original","page":"446-458","publication":"Developmental Cell","citation":{"ama":"D’Angelo MA, Gomez-Cavazos JS, Mei A, Lackner DH, Hetzer M. A change in nuclear pore complex composition regulates cell differentiation. Developmental Cell. 2012;22(2):446-458. doi:10.1016/j.devcel.2011.11.021","ista":"D’Angelo MA, Gomez-Cavazos JS, Mei A, Lackner DH, Hetzer M. 2012. A change in nuclear pore complex composition regulates cell differentiation. Developmental Cell. 22(2), 446–458.","ieee":"M. A. D’Angelo, J. S. Gomez-Cavazos, A. Mei, D. H. Lackner, and M. Hetzer, “A change in nuclear pore complex composition regulates cell differentiation,” Developmental Cell, vol. 22, no. 2. Elsevier, pp. 446–458, 2012.","apa":"D’Angelo, M. A., Gomez-Cavazos, J. S., Mei, A., Lackner, D. H., & Hetzer, M. (2012). A change in nuclear pore complex composition regulates cell differentiation. Developmental Cell. Elsevier. https://doi.org/10.1016/j.devcel.2011.11.021","mla":"D’Angelo, Maximiliano A., et al. “A Change in Nuclear Pore Complex Composition Regulates Cell Differentiation.” Developmental Cell, vol. 22, no. 2, Elsevier, 2012, pp. 446–58, doi:10.1016/j.devcel.2011.11.021.","short":"M.A. D’Angelo, J.S. Gomez-Cavazos, A. Mei, D.H. Lackner, M. Hetzer, Developmental Cell 22 (2012) 446–458.","chicago":"D’Angelo, Maximiliano A., J. Sebastian Gomez-Cavazos, Arianna Mei, Daniel H. Lackner, and Martin Hetzer. “A Change in Nuclear Pore Complex Composition Regulates Cell Differentiation.” Developmental Cell. Elsevier, 2012. https://doi.org/10.1016/j.devcel.2011.11.021."},"day":"19","article_processing_charge":"No","keyword":["Developmental Biology","Cell Biology","General Biochemistry","Genetics and Molecular Biology","Molecular Biology"],"scopus_import":"1","oa_version":"Published Version","title":"A change in nuclear pore complex composition regulates cell differentiation","status":"public","intvolume":" 22","_id":"11093","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","abstract":[{"text":"Nuclear pore complexes (NPCs) are built from ∼30 different proteins called nucleoporins or Nups. Previous studies have shown that several Nups exhibit cell-type-specific expression and that mutations in NPC components result in tissue-specific diseases. Here we show that a specific change in NPC composition is required for both myogenic and neuronal differentiation. The transmembrane nucleoporin Nup210 is absent in proliferating myoblasts and embryonic stem cells (ESCs) but becomes expressed and incorporated into NPCs during cell differentiation. Preventing Nup210 production by RNAi blocks myogenesis and the differentiation of ESCs into neuroprogenitors. We found that the addition of Nup210 to NPCs does not affect nuclear transport but is required for the induction of genes that are essential for cell differentiation. Our results identify a single change in NPC composition as an essential step in cell differentiation and establish a role for Nup210 in gene expression regulation and cell fate determination.","lang":"eng"}],"issue":"2","type":"journal_article","language":[{"iso":"eng"}],"doi":"10.1016/j.devcel.2011.11.021","quality_controlled":"1","external_id":{"pmid":["22264802"]},"oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.devcel.2011.11.021"}],"month":"01","publication_identifier":{"issn":["1534-5807"]},"date_created":"2022-04-07T07:52:10Z","date_updated":"2022-07-18T08:53:16Z","volume":22,"author":[{"first_name":"Maximiliano A.","last_name":"D'Angelo","full_name":"D'Angelo, Maximiliano A."},{"first_name":"J. Sebastian","last_name":"Gomez-Cavazos","full_name":"Gomez-Cavazos, J. Sebastian"},{"full_name":"Mei, Arianna","first_name":"Arianna","last_name":"Mei"},{"full_name":"Lackner, Daniel H.","last_name":"Lackner","first_name":"Daniel H."},{"full_name":"HETZER, Martin W","orcid":"0000-0002-2111-992X","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","last_name":"HETZER","first_name":"Martin W"}],"publication_status":"published","publisher":"Elsevier","year":"2012","pmid":1,"extern":"1"},{"oa_version":"None","_id":"11092","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","intvolume":" 335","status":"public","title":"Extremely long-lived nuclear pore proteins in the rat brain","issue":"6071","abstract":[{"text":"To combat the functional decline of the proteome, cells use the process of protein turnover to replace potentially impaired polypeptides with new functional copies. We found that extremely long-lived proteins (ELLPs) did not turn over in postmitotic cells of the rat central nervous system. These ELLPs were associated with chromatin and the nuclear pore complex, the central transport channels that mediate all molecular trafficking in and out of the nucleus. The longevity of these proteins would be expected to expose them to potentially harmful metabolites, putting them at risk of accumulating damage over extended periods of time. Thus, it is possible that failure to maintain proper levels and functional integrity of ELLPs in nonproliferative cells might contribute to age-related deterioration in cell and tissue function.","lang":"eng"}],"type":"journal_article","date_published":"2012-02-02T00:00:00Z","citation":{"short":"J.N. Savas, B.H. Toyama, T. Xu, J.R. Yates, M. Hetzer, Science 335 (2012) 942–942.","mla":"Savas, Jeffrey N., et al. “Extremely Long-Lived Nuclear Pore Proteins in the Rat Brain.” Science, vol. 335, no. 6071, American Association for the Advancement of Science, 2012, pp. 942–942, doi:10.1126/science.1217421.","chicago":"Savas, Jeffrey N., Brandon H. Toyama, Tao Xu, John R. Yates, and Martin Hetzer. “Extremely Long-Lived Nuclear Pore Proteins in the Rat Brain.” Science. American Association for the Advancement of Science, 2012. https://doi.org/10.1126/science.1217421.","ama":"Savas JN, Toyama BH, Xu T, Yates JR, Hetzer M. Extremely long-lived nuclear pore proteins in the rat brain. Science. 2012;335(6071):942-942. doi:10.1126/science.1217421","apa":"Savas, J. N., Toyama, B. H., Xu, T., Yates, J. R., & Hetzer, M. (2012). Extremely long-lived nuclear pore proteins in the rat brain. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1217421","ieee":"J. N. Savas, B. H. Toyama, T. Xu, J. R. Yates, and M. Hetzer, “Extremely long-lived nuclear pore proteins in the rat brain,” Science, vol. 335, no. 6071. American Association for the Advancement of Science, pp. 942–942, 2012.","ista":"Savas JN, Toyama BH, Xu T, Yates JR, Hetzer M. 2012. Extremely long-lived nuclear pore proteins in the rat brain. Science. 335(6071), 942–942."},"publication":"Science","page":"942-942","article_type":"letter_note","article_processing_charge":"No","day":"02","scopus_import":"1","keyword":["Multidisciplinary"],"author":[{"last_name":"Savas","first_name":"Jeffrey N.","full_name":"Savas, Jeffrey N."},{"full_name":"Toyama, Brandon H.","last_name":"Toyama","first_name":"Brandon H."},{"full_name":"Xu, Tao","last_name":"Xu","first_name":"Tao"},{"first_name":"John R.","last_name":"Yates","full_name":"Yates, John R."},{"last_name":"HETZER","first_name":"Martin W","orcid":"0000-0002-2111-992X","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","full_name":"HETZER, Martin W"}],"volume":335,"date_created":"2022-04-07T07:52:01Z","date_updated":"2022-07-18T08:53:06Z","pmid":1,"year":"2012","publisher":"American Association for the Advancement of Science","publication_status":"published","extern":"1","doi":"10.1126/science.1217421","language":[{"iso":"eng"}],"external_id":{"pmid":["22300851"]},"quality_controlled":"1","publication_identifier":{"issn":["0036-8075"],"eissn":["1095-9203"]},"month":"02"},{"intvolume":" 149","status":"public","title":"RNP export by nuclear envelope budding","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","_id":"11090","oa_version":"Published Version","type":"journal_article","issue":"4","abstract":[{"text":"Nuclear export of mRNAs is thought to occur exclusively through nuclear pore complexes. In this issue of Cell, Speese et al. identify an alternate pathway for mRNA export in muscle cells where ribonucleoprotein complexes involved in forming neuromuscular junctions transit the nuclear envelope by fusing with and budding through the nuclear membrane.","lang":"eng"}],"page":"733-735","article_type":"letter_note","citation":{"chicago":"Hatch, Emily M., and Martin Hetzer. “RNP Export by Nuclear Envelope Budding.” Cell. Elsevier, 2012. https://doi.org/10.1016/j.cell.2012.04.018.","mla":"Hatch, Emily M., and Martin Hetzer. “RNP Export by Nuclear Envelope Budding.” Cell, vol. 149, no. 4, Elsevier, 2012, pp. 733–35, doi:10.1016/j.cell.2012.04.018.","short":"E.M. Hatch, M. Hetzer, Cell 149 (2012) 733–735.","ista":"Hatch EM, Hetzer M. 2012. RNP export by nuclear envelope budding. Cell. 149(4), 733–735.","apa":"Hatch, E. M., & Hetzer, M. (2012). RNP export by nuclear envelope budding. Cell. Elsevier. https://doi.org/10.1016/j.cell.2012.04.018","ieee":"E. M. Hatch and M. Hetzer, “RNP export by nuclear envelope budding,” Cell, vol. 149, no. 4. Elsevier, pp. 733–735, 2012.","ama":"Hatch EM, Hetzer M. RNP export by nuclear envelope budding. Cell. 2012;149(4):733-735. doi:10.1016/j.cell.2012.04.018"},"publication":"Cell","date_published":"2012-05-11T00:00:00Z","keyword":["General Biochemistry","Genetics and Molecular Biology"],"scopus_import":"1","article_processing_charge":"No","day":"11","publisher":"Elsevier","publication_status":"published","pmid":1,"year":"2012","volume":149,"date_updated":"2022-07-18T08:58:48Z","date_created":"2022-04-07T07:51:45Z","author":[{"first_name":"Emily M.","last_name":"Hatch","full_name":"Hatch, Emily M."},{"id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X","first_name":"Martin W","last_name":"HETZER","full_name":"HETZER, Martin W"}],"extern":"1","quality_controlled":"1","oa":1,"main_file_link":[{"url":"https://doi.org/10.1016/j.cell.2012.04.018","open_access":"1"}],"external_id":{"pmid":["22579277"]},"language":[{"iso":"eng"}],"doi":"10.1016/j.cell.2012.04.018","publication_identifier":{"issn":["0092-8674"]},"month":"05"},{"month":"07","day":"12","page":"205 - 209","publication":"Nature","citation":{"short":"S.R. Waitukaitis, H. Jaeger, Nature 487 (2012) 205–209.","mla":"Waitukaitis, Scott R., and Heinrich Jaeger. “Impact-Activated Solidification of Dense Suspensions via Dynamic Jamming Fronts.” Nature, vol. 487, no. 7406, Nature Publishing Group, 2012, pp. 205–09, doi:10.1038/nature11187.","chicago":"Waitukaitis, Scott R, and Heinrich Jaeger. “Impact-Activated Solidification of Dense Suspensions via Dynamic Jamming Fronts.” Nature. Nature Publishing Group, 2012. https://doi.org/10.1038/nature11187.","ama":"Waitukaitis SR, Jaeger H. Impact-activated solidification of dense suspensions via dynamic jamming fronts. Nature. 2012;487(7406):205-209. doi:10.1038/nature11187","apa":"Waitukaitis, S. R., & Jaeger, H. (2012). Impact-activated solidification of dense suspensions via dynamic jamming fronts. Nature. Nature Publishing Group. https://doi.org/10.1038/nature11187","ieee":"S. R. Waitukaitis and H. Jaeger, “Impact-activated solidification of dense suspensions via dynamic jamming fronts,” Nature, vol. 487, no. 7406. Nature Publishing Group, pp. 205–209, 2012.","ista":"Waitukaitis SR, Jaeger H. 2012. Impact-activated solidification of dense suspensions via dynamic jamming fronts. Nature. 487(7406), 205–209."},"language":[{"iso":"eng"}],"doi":"10.1038/nature11187","date_published":"2012-07-12T00:00:00Z","type":"journal_article","extern":"1","abstract":[{"text":"Although liquids typically flow around intruding objects, a counterintuitive phenomenon occurs in dense suspensions of micrometre-sized particles: they become liquid-like when perturbed lightly, but harden when driven strongly. Rheological experiments have investigated how such thickening arises under shear, and linked it to hydrodynamic interactions or granular dilation. However, neither of these mechanisms alone can explain the ability of suspensions to generate very large, positive normal stresses under impact. To illustrate the phenomenon, such stresses can be large enough to allow a person to run across a suspension without sinking, and far exceed the upper limit observed under shear or extension. Here we show that these stresses originate from an impact-generated solidification front that transforms an initially compressible particle matrix into a rapidly growing jammed region, ultimately leading to extraordinary amounts of momentum absorption. Using high-speed videography, embedded force sensing and X-ray imaging, we capture the detailed dynamics of this process as it decelerates a metal rod hitting a suspension of cornflour (cornstarch) in water. We develop a model for the dynamic solidification and its effect on the surrounding suspension that reproduces the observed behaviour quantitatively. Our findings suggest that prior interpretations of the impact resistance as dominated by shear thickening need to be revisited.","lang":"eng"}],"issue":"7406","publist_id":"7941","publication_status":"published","title":"Impact-activated solidification of dense suspensions via dynamic jamming fronts","status":"public","intvolume":" 487","publisher":"Nature Publishing Group","_id":"113","year":"2012","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","acknowledgement":"This work was supported by NSF through its MRSEC programme (DMR-0820054) and by the US Army Research Office through grant number W911NF-12-1-0182. S.R.W. acknowledges support from a Millikan fellowship.","date_updated":"2021-01-12T06:48:30Z","date_created":"2018-12-11T11:44:42Z","oa_version":"None","volume":487,"author":[{"full_name":"Waitukaitis, Scott R","first_name":"Scott R","last_name":"Waitukaitis","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2299-3176"},{"first_name":"Heinrich","last_name":"Jaeger","full_name":"Jaeger, Heinrich"}]},{"has_accepted_license":"1","day":"14","citation":{"mla":"Waitukaitis, Scott R., and Heinrich Jaeger. “Solidification of a Cornstarch and Water Suspension.” Revista Cubana de Fisica, vol. 29, no. 1E, Universidad de La Habana, 2012, p. 1E31-1E33.","short":"S.R. Waitukaitis, H. Jaeger, Revista Cubana de Fisica 29 (2012) 1E31-1E33.","chicago":"Waitukaitis, Scott R, and Heinrich Jaeger. “Solidification of a Cornstarch and Water Suspension.” Revista Cubana de Fisica. Universidad de La Habana, 2012.","ama":"Waitukaitis SR, Jaeger H. Solidification of a cornstarch and water suspension. Revista Cubana de Fisica. 2012;29(1E):1E31-1E33.","ista":"Waitukaitis SR, Jaeger H. 2012. Solidification of a cornstarch and water suspension. Revista Cubana de Fisica. 29(1E), 1E31-1E33.","apa":"Waitukaitis, S. R., & Jaeger, H. (2012). Solidification of a cornstarch and water suspension. Revista Cubana de Fisica. Universidad de La Habana.","ieee":"S. R. Waitukaitis and H. Jaeger, “Solidification of a cornstarch and water suspension,” Revista Cubana de Fisica, vol. 29, no. 1E. Universidad de La Habana, p. 1E31-1E33, 2012."},"publication":"Revista Cubana de Fisica","page":"1E31 - 1E33","date_published":"2012-08-14T00:00:00Z","type":"journal_article","issue":"1E","abstract":[{"text":"We report on an investigation of the solidification of a cornstarch and water suspension during normal impact on its surface. We find that a finite time after impact, the suspension displays characteristics reminiscent of a solid, including localized stress transmission, the development of a yield stress, and some elastic energy storage. The time dependence of these characteristics depends on the thickness of the cornstarch layer, showing that the solidification is a dynamic process driven by the impacting object. These findings confirm previous speculations that rapidly applied normal stress transforms the normally fluid-like suspension into a temporarily jammed solid and draw a clear distinction between the effects of normal stress and shear stress in dense suspensions.","lang":"eng"}],"_id":"114","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","intvolume":" 29","title":"Solidification of a cornstarch and water suspension","ddc":["530"],"status":"public","file":[{"access_level":"open_access","file_name":"2012_RCF_Waitukaitis.pdf","file_size":589776,"content_type":"application/pdf","creator":"kschuh","relation":"main_file","file_id":"6461","success":1,"date_updated":"2019-05-16T11:08:52Z","date_created":"2019-05-16T11:08:52Z"}],"oa_version":"Published Version","month":"08","tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png","short":"CC BY-NC (4.0)"},"oa":1,"quality_controlled":"1","language":[{"iso":"eng"}],"publist_id":"7940","file_date_updated":"2019-05-16T11:08:52Z","extern":"1","acknowledgement":"This work was supported by the NSF through its MRSEC program (DMR-0820054). S. R. W. acknowledges support from a Millikan fellowship.","year":"2012","publisher":"Universidad de La Habana","publication_status":"published","author":[{"orcid":"0000-0002-2299-3176","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","last_name":"Waitukaitis","first_name":"Scott R","full_name":"Waitukaitis, Scott R"},{"full_name":"Jaeger, Heinrich","last_name":"Jaeger","first_name":"Heinrich"}],"volume":29,"date_created":"2018-12-11T11:44:42Z","date_updated":"2021-01-12T06:48:34Z"},{"publication_identifier":{"isbn":["9781450311564"]},"article_processing_charge":"No","day":"29","month":"10","scopus_import":"1","doi":"10.1145/2396761.2398621","date_published":"2012-10-29T00:00:00Z","conference":{"name":"CIKM: Conference on Information and Knowledge Management","start_date":"2012-10-29","location":"Maui, HI, United States","end_date":"2012-11-02"},"language":[{"iso":"eng"}],"citation":{"ama":"Dütting P, Henzinger MH, Weber I. Maximizing revenue from strategic recommendations under decaying trust. In: Proceedings of the 21st ACM International Conference on Information and Knowledge Management. Association for Computing Machinery; 2012:2268-2286. doi:10.1145/2396761.2398621","ieee":"P. Dütting, M. H. Henzinger, and I. Weber, “Maximizing revenue from strategic recommendations under decaying trust,” in Proceedings of the 21st ACM international conference on Information and knowledge management, Maui, HI, United States, 2012, pp. 2268–2286.","apa":"Dütting, P., Henzinger, M. H., & Weber, I. (2012). Maximizing revenue from strategic recommendations under decaying trust. In Proceedings of the 21st ACM international conference on Information and knowledge management (pp. 2268–2286). Maui, HI, United States: Association for Computing Machinery. https://doi.org/10.1145/2396761.2398621","ista":"Dütting P, Henzinger MH, Weber I. 2012. Maximizing revenue from strategic recommendations under decaying trust. Proceedings of the 21st ACM international conference on Information and knowledge management. CIKM: Conference on Information and Knowledge Management, 2268–2286.","short":"P. Dütting, M.H. Henzinger, I. Weber, in:, Proceedings of the 21st ACM International Conference on Information and Knowledge Management, Association for Computing Machinery, 2012, pp. 2268–2286.","mla":"Dütting, Paul, et al. “Maximizing Revenue from Strategic Recommendations under Decaying Trust.” Proceedings of the 21st ACM International Conference on Information and Knowledge Management, Association for Computing Machinery, 2012, pp. 2268–86, doi:10.1145/2396761.2398621.","chicago":"Dütting, Paul, Monika H Henzinger, and Ingmar Weber. “Maximizing Revenue from Strategic Recommendations under Decaying Trust.” In Proceedings of the 21st ACM International Conference on Information and Knowledge Management, 2268–86. Association for Computing Machinery, 2012. https://doi.org/10.1145/2396761.2398621."},"publication":"Proceedings of the 21st ACM international conference on Information and knowledge management","page":"2268-2286","quality_controlled":"1","abstract":[{"lang":"eng","text":"Suppose your sole interest in recommending a product to me is to maximize the amount paid to you by the seller for a sequence of recommendations. How should you recommend optimally if I become more inclined to ignore you with each irrelevant recommendation you make? Finding an answer to this question is a key challenge in all forms of marketing that rely on and explore social ties; ranging from personal recommendations to viral marketing.\r\n\r\nWe prove that even if the recommendee regains her initial trust on each successful recommendation, the expected revenue the recommender can make over an infinite period due to payments by the seller is bounded. This can only be overcome when the recommendee also incrementally regains trust during periods without any recommendation. Here, we see a connection to \"banner blindness,\" suggesting that showing fewer ads can lead to a higher long-term revenue."}],"extern":"1","type":"conference","author":[{"first_name":"Paul","last_name":"Dütting","full_name":"Dütting, Paul"},{"full_name":"Henzinger, Monika H","last_name":"Henzinger","first_name":"Monika H","orcid":"0000-0002-5008-6530","id":"540c9bbd-f2de-11ec-812d-d04a5be85630"},{"last_name":"Weber","first_name":"Ingmar","full_name":"Weber, Ingmar"}],"oa_version":"None","date_updated":"2023-02-09T09:19:49Z","date_created":"2022-07-27T06:47:53Z","year":"2012","_id":"11656","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"Association for Computing Machinery","title":"Maximizing revenue from strategic recommendations under decaying trust","status":"public","publication_status":"published"},{"date_published":"2012-08-01T00:00:00Z","article_type":"original","page":"5729-5734","publication":"Journal of Materials Science","citation":{"ama":"Lukas KC, Joshi G, Modic KA, Ren ZF, Opeil CP. Thermoelectric properties of Ho-doped Bi0.88Sb0.12. Journal of Materials Science. 2012;47(15):5729-5734. doi:10.1007/s10853-012-6463-6","ista":"Lukas KC, Joshi G, Modic KA, Ren ZF, Opeil CP. 2012. Thermoelectric properties of Ho-doped Bi0.88Sb0.12. Journal of Materials Science. 47(15), 5729–5734.","apa":"Lukas, K. C., Joshi, G., Modic, K. A., Ren, Z. F., & Opeil, C. P. (2012). Thermoelectric properties of Ho-doped Bi0.88Sb0.12. Journal of Materials Science. Springer Nature. https://doi.org/10.1007/s10853-012-6463-6","ieee":"K. C. Lukas, G. Joshi, K. A. Modic, Z. F. Ren, and C. P. Opeil, “Thermoelectric properties of Ho-doped Bi0.88Sb0.12,” Journal of Materials Science, vol. 47, no. 15. Springer Nature, pp. 5729–5734, 2012.","mla":"Lukas, K. C., et al. “Thermoelectric Properties of Ho-Doped Bi0.88Sb0.12.” Journal of Materials Science, vol. 47, no. 15, Springer Nature, 2012, pp. 5729–34, doi:10.1007/s10853-012-6463-6.","short":"K.C. Lukas, G. Joshi, K.A. Modic, Z.F. Ren, C.P. Opeil, Journal of Materials Science 47 (2012) 5729–5734.","chicago":"Lukas, K. C., G. Joshi, Kimberly A Modic, Z. F. Ren, and C. P. Opeil. “Thermoelectric Properties of Ho-Doped Bi0.88Sb0.12.” Journal of Materials Science. Springer Nature, 2012. https://doi.org/10.1007/s10853-012-6463-6."},"day":"01","article_processing_charge":"No","scopus_import":"1","oa_version":"Preprint","status":"public","title":"Thermoelectric properties of Ho-doped Bi0.88Sb0.12","intvolume":" 47","_id":"11751","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"text":"The Seebeck coefficients, electrical resistivities, total thermal conductivities, and magnetization are reported for temperatures between 5 and 350 K for n-type Bi0.88Sb0.12 nano-composite alloys made by Ho-doping at the 0, 1, and 3 % atomic levels. The alloys were prepared using a dc hot-pressing method, and are shown to be single phase for both Ho contents with grain sizes on the average of 900 nm. We find the parent compound has a maximum of ZT = 0.28 at 231 K, while doping 1 % Ho increases the maximum ZT to 0.31 at 221 K and the 3 % doped sample suppresses the maximum ZT = 0.24 at a temperature of 260 K.","lang":"eng"}],"issue":"15","type":"journal_article","language":[{"iso":"eng"}],"doi":"10.1007/s10853-012-6463-6","quality_controlled":"1","external_id":{"arxiv":["1201.6304"]},"month":"08","publication_identifier":{"issn":["0022-2461"],"eissn":["1573-4803"]},"date_created":"2022-08-08T08:28:20Z","date_updated":"2022-08-11T09:34:39Z","volume":47,"author":[{"first_name":"K. C.","last_name":"Lukas","full_name":"Lukas, K. C."},{"last_name":"Joshi","first_name":"G.","full_name":"Joshi, G."},{"first_name":"Kimberly A","last_name":"Modic","id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425","orcid":"0000-0001-9760-3147","full_name":"Modic, Kimberly A"},{"last_name":"Ren","first_name":"Z. F.","full_name":"Ren, Z. F."},{"first_name":"C. P.","last_name":"Opeil","full_name":"Opeil, C. P."}],"publication_status":"published","publisher":"Springer Nature","year":"2012","extern":"1"},{"volume":7695,"date_created":"2022-08-11T11:32:25Z","date_updated":"2023-02-21T16:28:29Z","related_material":{"record":[{"id":"11794","status":"public","relation":"later_version"}]},"author":[{"full_name":"Dütting, Paul","last_name":"Dütting","first_name":"Paul"},{"orcid":"0000-0002-5008-6530","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","last_name":"Henzinger","first_name":"Monika H","full_name":"Henzinger, Monika H"},{"full_name":"Starnberger, Martin","last_name":"Starnberger","first_name":"Martin"}],"publisher":"Springer Nature","publication_status":"published","year":"2012","extern":"1","language":[{"iso":"eng"}],"doi":"10.1007/978-3-642-35311-6_4","conference":{"name":"WINE: International Conference on Web and Internet Economics","location":"Liverpool, United Kingdom","start_date":"2012-12-11","end_date":"2012-12-14"},"quality_controlled":"1","oa":1,"external_id":{"arxiv":["1209.6448"]},"main_file_link":[{"url":"https://arxiv.org/abs/1209.6448","open_access":"1"}],"publication_identifier":{"isbn":["9783642353109"],"issn":["1611-3349"]},"month":"12","oa_version":"Preprint","intvolume":" 7695","status":"public","title":"Auctions with heterogeneous items and budget limits","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"11794","abstract":[{"text":"We study individual rational, Pareto optimal, and incentive compatible mechanisms for auctions with heterogeneous items and budget limits. For multi-dimensional valuations we show that there can be no deterministic mechanism with these properties for divisible items. We use this to show that there can also be no randomized mechanism that achieves this for either divisible or indivisible items. For single-dimensional valuations we show that there can be no deterministic mechanism with these properties for indivisible items, but that there is a randomized mechanism that achieves this for either divisible or indivisible items. The impossibility results hold for public budgets, while the mechanism allows private budgets, which is in both cases the harder variant to show. While all positive results are polynomial-time algorithms, all negative results hold independent of complexity considerations.","lang":"eng"}],"alternative_title":["LNCS"],"type":"conference","date_published":"2012-12-01T00:00:00Z","page":"44–57","citation":{"ama":"Dütting P, Henzinger MH, Starnberger M. Auctions with heterogeneous items and budget limits. In: 8th International Workshop on Internet and Network Economics. Vol 7695. Springer Nature; 2012:44–57. doi:10.1007/978-3-642-35311-6_4","ista":"Dütting P, Henzinger MH, Starnberger M. 2012. Auctions with heterogeneous items and budget limits. 8th International Workshop on Internet and Network Economics. WINE: International Conference on Web and Internet Economics, LNCS, vol. 7695, 44–57.","apa":"Dütting, P., Henzinger, M. H., & Starnberger, M. (2012). Auctions with heterogeneous items and budget limits. In 8th International Workshop on Internet and Network Economics (Vol. 7695, pp. 44–57). Liverpool, United Kingdom: Springer Nature. https://doi.org/10.1007/978-3-642-35311-6_4","ieee":"P. Dütting, M. H. Henzinger, and M. Starnberger, “Auctions with heterogeneous items and budget limits,” in 8th International Workshop on Internet and Network Economics, Liverpool, United Kingdom, 2012, vol. 7695, pp. 44–57.","mla":"Dütting, Paul, et al. “Auctions with Heterogeneous Items and Budget Limits.” 8th International Workshop on Internet and Network Economics, vol. 7695, Springer Nature, 2012, pp. 44–57, doi:10.1007/978-3-642-35311-6_4.","short":"P. Dütting, M.H. Henzinger, M. Starnberger, in:, 8th International Workshop on Internet and Network Economics, Springer Nature, 2012, pp. 44–57.","chicago":"Dütting, Paul, Monika H Henzinger, and Martin Starnberger. “Auctions with Heterogeneous Items and Budget Limits.” In 8th International Workshop on Internet and Network Economics, 7695:44–57. Springer Nature, 2012. https://doi.org/10.1007/978-3-642-35311-6_4."},"publication":"8th International Workshop on Internet and Network Economics","article_processing_charge":"No","day":"01","scopus_import":"1"},{"scopus_import":"1","article_processing_charge":"No","day":"01","page":"1–12","citation":{"ista":"Colini-Baldeschi R, Henzinger MH, Leonardi S, Starnberger M. 2012. On multiple keyword sponsored search auctions with budgets. 39th International Colloquium on Automata, Languages, and Programming. ICALP: International Colloquium on Automata, Languages, and Programming, LNCS, vol. 7392, 1–12.","ieee":"R. Colini-Baldeschi, M. H. Henzinger, S. Leonardi, and M. Starnberger, “On multiple keyword sponsored search auctions with budgets,” in 39th International Colloquium on Automata, Languages, and Programming, Warwick, United Kingdom, 2012, vol. 7392, pp. 1–12.","apa":"Colini-Baldeschi, R., Henzinger, M. H., Leonardi, S., & Starnberger, M. (2012). On multiple keyword sponsored search auctions with budgets. In 39th International Colloquium on Automata, Languages, and Programming (Vol. 7392, pp. 1–12). Warwick, United Kingdom: Springer Nature. https://doi.org/10.1007/978-3-642-31585-5_1","ama":"Colini-Baldeschi R, Henzinger MH, Leonardi S, Starnberger M. On multiple keyword sponsored search auctions with budgets. In: 39th International Colloquium on Automata, Languages, and Programming. Vol 7392. Springer Nature; 2012:1–12. doi:10.1007/978-3-642-31585-5_1","chicago":"Colini-Baldeschi, Riccardo, Monika H Henzinger, Stefano Leonardi, and Martin Starnberger. “On Multiple Keyword Sponsored Search Auctions with Budgets.” In 39th International Colloquium on Automata, Languages, and Programming, 7392:1–12. Springer Nature, 2012. https://doi.org/10.1007/978-3-642-31585-5_1.","mla":"Colini-Baldeschi, Riccardo, et al. “On Multiple Keyword Sponsored Search Auctions with Budgets.” 39th International Colloquium on Automata, Languages, and Programming, vol. 7392, Springer Nature, 2012, pp. 1–12, doi:10.1007/978-3-642-31585-5_1.","short":"R. Colini-Baldeschi, M.H. Henzinger, S. Leonardi, M. Starnberger, in:, 39th International Colloquium on Automata, Languages, and Programming, Springer Nature, 2012, pp. 1–12."},"publication":"39th International Colloquium on Automata, Languages, and Programming","date_published":"2012-07-01T00:00:00Z","alternative_title":["LNCS"],"type":"conference","abstract":[{"text":"We study multiple keyword sponsored search auctions with budgets. Each keyword has multiple ad slots with a click-through rate. The bidders have additive valuations, which are linear in the click-through rates, and budgets, which are restricting their overall payments. Additionally, the number of slots per keyword assigned to a bidder is bounded.\r\n\r\nWe show the following results: (1) We give the first mechanism for multiple keywords, where click-through rates differ among slots. Our mechanism is incentive compatible in expectation, individually rational in expectation, and Pareto optimal. (2) We study the combinatorial setting, where each bidder is only interested in a subset of the keywords. We give an incentive compatible, individually rational, Pareto optimal, and deterministic mechanism for identical click-through rates. (3) We give an impossibility result for incentive compatible, individually rational, Pareto optimal, and deterministic mechanisms for bidders with diminishing marginal valuations.","lang":"eng"}],"intvolume":" 7392","status":"public","title":"On multiple keyword sponsored search auctions with budgets","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"11795","oa_version":"None","publication_identifier":{"isbn":["9783642315848"],"issn":["0302-9743"]},"month":"07","quality_controlled":"1","language":[{"iso":"eng"}],"doi":"10.1007/978-3-642-31585-5_1","conference":{"name":"ICALP: International Colloquium on Automata, Languages, and Programming","location":"Warwick, United Kingdom","start_date":"2012-07-09","end_date":"2012-07-13"},"extern":"1","publisher":"Springer Nature","publication_status":"published","year":"2012","volume":7392,"date_created":"2022-08-11T11:46:51Z","date_updated":"2023-02-21T16:28:31Z","related_material":{"record":[{"id":"11795","relation":"later_version","status":"public"}]},"author":[{"full_name":"Colini-Baldeschi, Riccardo","first_name":"Riccardo","last_name":"Colini-Baldeschi"},{"full_name":"Henzinger, Monika H","last_name":"Henzinger","first_name":"Monika H","orcid":"0000-0002-5008-6530","id":"540c9bbd-f2de-11ec-812d-d04a5be85630"},{"full_name":"Leonardi, Stefano","first_name":"Stefano","last_name":"Leonardi"},{"first_name":"Martin","last_name":"Starnberger","full_name":"Starnberger, Martin"}]},{"quality_controlled":"1","external_id":{"pmid":["22396386"]},"language":[{"iso":"eng"}],"doi":"10.1002/chem.201103748","publication_identifier":{"eissn":["1521-3765"],"issn":["0947-6539"]},"month":"04","publisher":"Wiley","publication_status":"published","pmid":1,"year":"2012","volume":18,"date_created":"2022-08-24T12:48:28Z","date_updated":"2023-02-21T10:09:35Z","author":[{"last_name":"Pieber","first_name":"Bartholomäus","orcid":"0000-0001-8689-388X","id":"93e5e5b2-0da6-11ed-8a41-af589a024726","full_name":"Pieber, Bartholomäus"},{"full_name":"Cantillo, David","last_name":"Cantillo","first_name":"David"},{"last_name":"Kappe","first_name":"C. Oliver","full_name":"Kappe, C. Oliver"}],"extern":"1","page":"5047-5055","article_type":"original","citation":{"ama":"Pieber B, Cantillo D, Kappe CO. Direct arylation of benzene with aryl bromides using high‐temperature/high‐pressure process windows: Expanding the scope of C-H activation chemistry. Chemistry – A European Journal. 2012;18(16):5047-5055. doi:10.1002/chem.201103748","ista":"Pieber B, Cantillo D, Kappe CO. 2012. Direct arylation of benzene with aryl bromides using high‐temperature/high‐pressure process windows: Expanding the scope of C-H activation chemistry. Chemistry – A European Journal. 18(16), 5047–5055.","apa":"Pieber, B., Cantillo, D., & Kappe, C. O. (2012). Direct arylation of benzene with aryl bromides using high‐temperature/high‐pressure process windows: Expanding the scope of C-H activation chemistry. Chemistry – A European Journal. Wiley. https://doi.org/10.1002/chem.201103748","ieee":"B. Pieber, D. Cantillo, and C. O. Kappe, “Direct arylation of benzene with aryl bromides using high‐temperature/high‐pressure process windows: Expanding the scope of C-H activation chemistry,” Chemistry – A European Journal, vol. 18, no. 16. Wiley, pp. 5047–5055, 2012.","mla":"Pieber, Bartholomäus, et al. “Direct Arylation of Benzene with Aryl Bromides Using High‐temperature/High‐pressure Process Windows: Expanding the Scope of C-H Activation Chemistry.” Chemistry – A European Journal, vol. 18, no. 16, Wiley, 2012, pp. 5047–55, doi:10.1002/chem.201103748.","short":"B. Pieber, D. Cantillo, C.O. Kappe, Chemistry – A European Journal 18 (2012) 5047–5055.","chicago":"Pieber, Bartholomäus, David Cantillo, and C. Oliver Kappe. “Direct Arylation of Benzene with Aryl Bromides Using High‐temperature/High‐pressure Process Windows: Expanding the Scope of C-H Activation Chemistry.” Chemistry – A European Journal. Wiley, 2012. https://doi.org/10.1002/chem.201103748."},"publication":"Chemistry – A European Journal","date_published":"2012-04-16T00:00:00Z","scopus_import":"1","article_processing_charge":"No","day":"16","intvolume":" 18","title":"Direct arylation of benzene with aryl bromides using high‐temperature/high‐pressure process windows: Expanding the scope of C-H activation chemistry","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"11964","oa_version":"None","type":"journal_article","issue":"16","abstract":[{"lang":"eng","text":"A detailed investigation on the direct arylation of benzene with aryl bromides by using first-row transition metals under high-temperature/high-pressure (high-T/p) conditions is described. By employing a parallel reactor platform for rapid reaction screening and discovery at elevated temperatures, various metal/ligand/base combinations were evaluated for their ability to enable biaryl formation through C-H activation. The combination of cobalt(III) acetylacetonate and lithium bis(trimethylsilyl)amide was subjected to further process intensification at 200 °C (15 bar), allowing a significant reduction of the catalyst/base loading and a dramatic increase in catalytic efficiency (turnover frequency) by a factor of 1000 compared to traditional protocols. The high-throughput screening additionally identified novel nickel- and copper-based metal/ligand combinations that favored an amination pathway competing with C-H activation, with the addition of ligands, such as 1,10-phenanthroline, having a profound influence on the selectivity. In addition to metal-based catalysts, high-T/p process windows were also successfully applied to transition-metal-free systems, utilizing 1,10-phenanthroline as organocatalyst."}]},{"_id":"11963","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Copper-catalyzed formation of C-O bonds by direct α-C-H bond activation of ethers using stoichiometric amounts of peroxide in batch and continuous-flow formats","status":"public","intvolume":" 18","oa_version":"None","type":"journal_article","abstract":[{"lang":"eng","text":"Peroxides and ethers in flow: 2-Carbonyl-substituted phenols and β-ketoesters react safely with ethers in a microreactor environment using a copper catalyst and an organic peroxide (TBHP). This protocol results in unsymmetrical acetal scaffolds not easily available otherwise (see scheme)."}],"issue":"20","publication":"Chemistry - A European Journal","citation":{"ama":"Kumar GS, Pieber B, Reddy KR, Kappe CO. Copper-catalyzed formation of C-O bonds by direct α-C-H bond activation of ethers using stoichiometric amounts of peroxide in batch and continuous-flow formats. Chemistry - A European Journal. 2012;18(20):6124-6128. doi:10.1002/chem.201200815","ista":"Kumar GS, Pieber B, Reddy KR, Kappe CO. 2012. Copper-catalyzed formation of C-O bonds by direct α-C-H bond activation of ethers using stoichiometric amounts of peroxide in batch and continuous-flow formats. Chemistry - A European Journal. 18(20), 6124–6128.","apa":"Kumar, G. S., Pieber, B., Reddy, K. R., & Kappe, C. O. (2012). Copper-catalyzed formation of C-O bonds by direct α-C-H bond activation of ethers using stoichiometric amounts of peroxide in batch and continuous-flow formats. Chemistry - A European Journal. Wiley. https://doi.org/10.1002/chem.201200815","ieee":"G. S. Kumar, B. Pieber, K. R. Reddy, and C. O. Kappe, “Copper-catalyzed formation of C-O bonds by direct α-C-H bond activation of ethers using stoichiometric amounts of peroxide in batch and continuous-flow formats,” Chemistry - A European Journal, vol. 18, no. 20. Wiley, pp. 6124–6128, 2012.","mla":"Kumar, G. Sathish, et al. “Copper-Catalyzed Formation of C-O Bonds by Direct α-C-H Bond Activation of Ethers Using Stoichiometric Amounts of Peroxide in Batch and Continuous-Flow Formats.” Chemistry - A European Journal, vol. 18, no. 20, Wiley, 2012, pp. 6124–28, doi:10.1002/chem.201200815.","short":"G.S. Kumar, B. Pieber, K.R. Reddy, C.O. Kappe, Chemistry - A European Journal 18 (2012) 6124–6128.","chicago":"Kumar, G. Sathish, Bartholomäus Pieber, K. Rajender Reddy, and C. Oliver Kappe. “Copper-Catalyzed Formation of C-O Bonds by Direct α-C-H Bond Activation of Ethers Using Stoichiometric Amounts of Peroxide in Batch and Continuous-Flow Formats.” Chemistry - A European Journal. Wiley, 2012. https://doi.org/10.1002/chem.201200815."},"article_type":"letter_note","page":"6124-6128","date_published":"2012-05-14T00:00:00Z","scopus_import":"1","day":"14","article_processing_charge":"No","year":"2012","pmid":1,"publication_status":"published","publisher":"Wiley","author":[{"full_name":"Kumar, G. Sathish","first_name":"G. Sathish","last_name":"Kumar"},{"full_name":"Pieber, Bartholomäus","orcid":"0000-0001-8689-388X","id":"93e5e5b2-0da6-11ed-8a41-af589a024726","last_name":"Pieber","first_name":"Bartholomäus"},{"last_name":"Reddy","first_name":"K. Rajender","full_name":"Reddy, K. Rajender"},{"full_name":"Kappe, C. Oliver","first_name":"C. Oliver","last_name":"Kappe"}],"date_created":"2022-08-24T12:33:05Z","date_updated":"2023-02-21T10:09:33Z","volume":18,"extern":"1","external_id":{"pmid":["22492535"]},"quality_controlled":"1","doi":"10.1002/chem.201200815","language":[{"iso":"eng"}],"month":"05","publication_identifier":{"eissn":["1521-3765"],"issn":["0947-6539"]}},{"article_number":"W03509","extern":"1","year":"2012","publisher":"American Geophysical Union","publication_status":"published","author":[{"full_name":"Ragettli, S.","last_name":"Ragettli","first_name":"S."},{"last_name":"Pellicciotti","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca"}],"volume":48,"date_updated":"2023-02-21T09:38:36Z","date_created":"2023-02-20T08:17:39Z","publication_identifier":{"issn":["0043-1397"]},"month":"03","oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1029/2011WR010559"}],"quality_controlled":"1","doi":"10.1029/2011wr010559","language":[{"iso":"eng"}],"type":"journal_article","issue":"3","abstract":[{"text":"In the Dry Andes of central Chile, summer water resources originate mostly from snowmelt and ice melt. We use the physically based, spatially distributed hydrological model TOPKAPI to study the exchange between glaciers and climate in the upper Aconcagua River Basin during the summer season and identify the model parameters that are robust and transferable and those that are more dependent on calibration. TOPKAPI has recently been adapted to incorporate an enhanced temperature index approach for snow and ice melting. We suggest a calibration procedure that allows calibration of parameters in three steps by separating parameters governing distinct processes. We evaluate the parameters' transferability in time and in space by applying the model at two spatial scales. TOPKAPI's ability to simulate the relevant processes is tested against meteorological, ablation, and glacier runoff data measured on Juncal Norte Glacier during two glacier ablation seasons. The model was applied successfully to the climatic setting of the Dry Andes once its parameters were recalibrated. We found a clear distinction between parameters that are stable in time and those that need recalibration. The parameters of the melt model are transferable from one season to the other, while the parameters governing the extrapolation of meteorological input data and the routing of glacier meltwater need recalibration from one season to the other. Sensitivity analysis revealed that the model is most sensitive to the temperature lapse rate governing the extrapolation of air temperature from point measurements to the glacier scale and to the melt parameter that multiplies the shortwave radiation balance.","lang":"eng"}],"_id":"12644","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 48","status":"public","title":"Calibration of a physically based, spatially distributed hydrological model in a glacierized basin: On the use of knowledge from glaciometeorological processes to constrain model parameters","oa_version":"Published Version","scopus_import":"1","article_processing_charge":"No","day":"01","citation":{"ama":"Ragettli S, Pellicciotti F. Calibration of a physically based, spatially distributed hydrological model in a glacierized basin: On the use of knowledge from glaciometeorological processes to constrain model parameters. Water Resources Research. 2012;48(3). doi:10.1029/2011wr010559","ista":"Ragettli S, Pellicciotti F. 2012. Calibration of a physically based, spatially distributed hydrological model in a glacierized basin: On the use of knowledge from glaciometeorological processes to constrain model parameters. Water Resources Research. 48(3), W03509.","ieee":"S. Ragettli and F. Pellicciotti, “Calibration of a physically based, spatially distributed hydrological model in a glacierized basin: On the use of knowledge from glaciometeorological processes to constrain model parameters,” Water Resources Research, vol. 48, no. 3. American Geophysical Union, 2012.","apa":"Ragettli, S., & Pellicciotti, F. (2012). Calibration of a physically based, spatially distributed hydrological model in a glacierized basin: On the use of knowledge from glaciometeorological processes to constrain model parameters. Water Resources Research. American Geophysical Union. https://doi.org/10.1029/2011wr010559","mla":"Ragettli, S., and Francesca Pellicciotti. “Calibration of a Physically Based, Spatially Distributed Hydrological Model in a Glacierized Basin: On the Use of Knowledge from Glaciometeorological Processes to Constrain Model Parameters.” Water Resources Research, vol. 48, no. 3, W03509, American Geophysical Union, 2012, doi:10.1029/2011wr010559.","short":"S. Ragettli, F. Pellicciotti, Water Resources Research 48 (2012).","chicago":"Ragettli, S., and Francesca Pellicciotti. “Calibration of a Physically Based, Spatially Distributed Hydrological Model in a Glacierized Basin: On the Use of Knowledge from Glaciometeorological Processes to Constrain Model Parameters.” Water Resources Research. American Geophysical Union, 2012. https://doi.org/10.1029/2011wr010559."},"publication":"Water Resources Research","article_type":"original","date_published":"2012-03-01T00:00:00Z"},{"scopus_import":"1","article_processing_charge":"No","day":"01","page":"39-50","article_type":"original","citation":{"short":"F. Pellicciotti, C. Buergi, W.W. Immerzeel, M. Konz, A.B. Shrestha, Mountain Research and Development 32 (2012) 39–50.","mla":"Pellicciotti, Francesca, et al. “Challenges and Uncertainties in Hydrological Modeling of Remote Hindu Kush–Karakoram–Himalayan (HKH) Basins: Suggestions for Calibration Strategies.” Mountain Research and Development, vol. 32, no. 1, International Mountain Society, 2012, pp. 39–50, doi:10.1659/mrd-journal-d-11-00092.1.","chicago":"Pellicciotti, Francesca, Cyrill Buergi, Walter Willem Immerzeel, Markus Konz, and Arun B. Shrestha. “Challenges and Uncertainties in Hydrological Modeling of Remote Hindu Kush–Karakoram–Himalayan (HKH) Basins: Suggestions for Calibration Strategies.” Mountain Research and Development. International Mountain Society, 2012. https://doi.org/10.1659/mrd-journal-d-11-00092.1.","ama":"Pellicciotti F, Buergi C, Immerzeel WW, Konz M, Shrestha AB. Challenges and uncertainties in hydrological modeling of remote Hindu Kush–Karakoram–Himalayan (HKH) basins: Suggestions for calibration strategies. Mountain Research and Development. 2012;32(1):39-50. doi:10.1659/mrd-journal-d-11-00092.1","apa":"Pellicciotti, F., Buergi, C., Immerzeel, W. W., Konz, M., & Shrestha, A. B. (2012). Challenges and uncertainties in hydrological modeling of remote Hindu Kush–Karakoram–Himalayan (HKH) basins: Suggestions for calibration strategies. Mountain Research and Development. International Mountain Society. https://doi.org/10.1659/mrd-journal-d-11-00092.1","ieee":"F. Pellicciotti, C. Buergi, W. W. Immerzeel, M. Konz, and A. B. Shrestha, “Challenges and uncertainties in hydrological modeling of remote Hindu Kush–Karakoram–Himalayan (HKH) basins: Suggestions for calibration strategies,” Mountain Research and Development, vol. 32, no. 1. International Mountain Society, pp. 39–50, 2012.","ista":"Pellicciotti F, Buergi C, Immerzeel WW, Konz M, Shrestha AB. 2012. Challenges and uncertainties in hydrological modeling of remote Hindu Kush–Karakoram–Himalayan (HKH) basins: Suggestions for calibration strategies. Mountain Research and Development. 32(1), 39–50."},"publication":"Mountain Research and Development","date_published":"2012-02-01T00:00:00Z","type":"journal_article","issue":"1","abstract":[{"text":"Assessment of water resources from remote mountainous catchments plays a crucial role for the development of rural areas in or in the vicinity of mountain ranges. The scarcity of data, however, prevents the application of standard approaches that are based on data-driven models. The Hindu Kush–Karakoram–Himalaya mountain range is a crucial area in terms of water resources, but our understanding of the response of its high-elevation catchments to a changing climate is hindered by lack of hydro-meteorological and cryospheric data. Hydrological modeling is challenging here because internal inconsistencies—such as an underestimation of precipitation input that can be compensated for by an overestimation of meltwater—might be hidden due to the complexity of feedback mechanisms that govern melt and runoff generation in such basins. Data scarcity adds to this difficulty by preventing the application of systematic calibration procedures that would allow identification of the parameter set that could guarantee internal consistency in the simulation of the single hydrological components. In this work, we use simulations from the Hunza River Basin in the Karakoram region obtained with the hydrological model TOPKAPI to quantify the predictive power of discharge and snow-cover data sets, as well as the combination of both. We also show that short-term measurements of meteorological variables such as radiative fluxes, wind speed, relative humidity, and air temperature from glacio-meteorological experiments are crucial for a correct parameterization of surface melt processes. They enable detailed simulations of the energy fluxes governing glacier–atmosphere interaction and the resulting ablation through energy-balance modeling. These simulations are used to derive calibrated parameters for the simplified snow and glacier routines in TOPKAPI. We demonstrate that such parameters are stable in space and time in similar climatic regions, thus reducing the number of parameters requiring calibration.","lang":"eng"}],"intvolume":" 32","title":"Challenges and uncertainties in hydrological modeling of remote Hindu Kush–Karakoram–Himalayan (HKH) basins: Suggestions for calibration strategies","status":"public","_id":"12646","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","publication_identifier":{"eissn":["1994-7151"],"issn":["0276-4741"]},"month":"02","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1659/MRD-JOURNAL-D-11-00092.1"}],"oa":1,"language":[{"iso":"eng"}],"doi":"10.1659/mrd-journal-d-11-00092.1","extern":"1","publisher":"International Mountain Society","publication_status":"published","year":"2012","volume":32,"date_created":"2023-02-20T08:17:47Z","date_updated":"2023-02-21T09:31:54Z","author":[{"full_name":"Pellicciotti, Francesca","first_name":"Francesca","last_name":"Pellicciotti","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"},{"full_name":"Buergi, Cyrill","last_name":"Buergi","first_name":"Cyrill"},{"first_name":"Walter Willem","last_name":"Immerzeel","full_name":"Immerzeel, Walter Willem"},{"last_name":"Konz","first_name":"Markus","full_name":"Konz, Markus"},{"last_name":"Shrestha","first_name":"Arun B.","full_name":"Shrestha, Arun B."}]},{"extern":"1","author":[{"full_name":"Immerzeel, Walter Willem","first_name":"Walter Willem","last_name":"Immerzeel"},{"full_name":"Pellicciotti, Francesca","first_name":"Francesca","last_name":"Pellicciotti","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"},{"full_name":"Shrestha, Arun B.","last_name":"Shrestha","first_name":"Arun B."}],"volume":32,"date_created":"2023-02-20T08:17:52Z","date_updated":"2023-02-21T08:56:29Z","year":"2012","publisher":"International Mountain Society","publication_status":"published","publication_identifier":{"eissn":["1994-7151"],"issn":["0276-4741"]},"month":"02","doi":"10.1659/mrd-journal-d-11-00097.1","language":[{"iso":"eng"}],"main_file_link":[{"url":"https://doi.org/10.1659/MRD-JOURNAL-D-11-00097.1","open_access":"1"}],"oa":1,"quality_controlled":"1","issue":"1","abstract":[{"lang":"eng","text":"Accurate quantification of the spatial distribution of precipitation in mountain regions is crucial for assessments of water resources and for the understanding of high-altitude hydrology, yet it is one of the largest unknowns due to the lack of high-altitude observations. The Hunza basin in Pakistan contains very large glacier systems, which, given the melt, cannot persist unless precipitation (snow input) is much higher than what is observed at the meteorological stations, mostly located in mountain valleys. Several studies, therefore, suggest strong positive vertical precipitation lapse rates; in the present study, we quantify this lapse rate by using glaciers as a proxy. We assume a neutral mass balance for the glaciers for the period from 2001 to 2003, and we inversely model the precipitation lapse by balancing the total accumulation in the catchment area and the ablation over the glacier area for the 50 largest glacier systems in the Hunza basin in the Karakoram. Our results reveal a vertical precipitation lapse rate that equals 0.21 ± 0.12% m−1, with a maximum precipitation at an elevation of 5500 masl. We showed that the total annual basin precipitation (828 mm) is 260% higher than what is estimated based on interpolated observations (319 mm); this has major consequences for hydrological modeling and water resource assessments in general. Our results were validated by using previously published studies on individual glaciers as well as the water balance of the Hunza basin. The approach is more widely applicable in mountain ranges where precipitation measurements at high altitude are lacking."}],"type":"journal_article","oa_version":"Published Version","_id":"12647","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 32","title":"Glaciers as a proxy to quantify the spatial distribution of precipitation in the Hunza basin","status":"public","article_processing_charge":"No","day":"01","scopus_import":"1","keyword":["General Environmental Science","Development","Environmental Chemistry"],"date_published":"2012-02-01T00:00:00Z","citation":{"ista":"Immerzeel WW, Pellicciotti F, Shrestha AB. 2012. Glaciers as a proxy to quantify the spatial distribution of precipitation in the Hunza basin. Mountain Research and Development. 32(1), 30–38.","ieee":"W. W. Immerzeel, F. Pellicciotti, and A. B. Shrestha, “Glaciers as a proxy to quantify the spatial distribution of precipitation in the Hunza basin,” Mountain Research and Development, vol. 32, no. 1. International Mountain Society, pp. 30–38, 2012.","apa":"Immerzeel, W. W., Pellicciotti, F., & Shrestha, A. B. (2012). Glaciers as a proxy to quantify the spatial distribution of precipitation in the Hunza basin. Mountain Research and Development. International Mountain Society. https://doi.org/10.1659/mrd-journal-d-11-00097.1","ama":"Immerzeel WW, Pellicciotti F, Shrestha AB. Glaciers as a proxy to quantify the spatial distribution of precipitation in the Hunza basin. Mountain Research and Development. 2012;32(1):30-38. doi:10.1659/mrd-journal-d-11-00097.1","chicago":"Immerzeel, Walter Willem, Francesca Pellicciotti, and Arun B. Shrestha. “Glaciers as a Proxy to Quantify the Spatial Distribution of Precipitation in the Hunza Basin.” Mountain Research and Development. International Mountain Society, 2012. https://doi.org/10.1659/mrd-journal-d-11-00097.1.","mla":"Immerzeel, Walter Willem, et al. “Glaciers as a Proxy to Quantify the Spatial Distribution of Precipitation in the Hunza Basin.” Mountain Research and Development, vol. 32, no. 1, International Mountain Society, 2012, pp. 30–38, doi:10.1659/mrd-journal-d-11-00097.1.","short":"W.W. Immerzeel, F. Pellicciotti, A.B. Shrestha, Mountain Research and Development 32 (2012) 30–38."},"publication":"Mountain Research and Development","page":"30-38","article_type":"original"},{"extern":"1","article_number":"D18105","author":[{"full_name":"Reid, T. D.","first_name":"T. D.","last_name":"Reid"},{"full_name":"Carenzo, M.","last_name":"Carenzo","first_name":"M."},{"full_name":"Pellicciotti, Francesca","first_name":"Francesca","last_name":"Pellicciotti","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"},{"full_name":"Brock, B. W.","last_name":"Brock","first_name":"B. W."}],"date_updated":"2023-02-20T10:57:31Z","date_created":"2023-02-20T08:17:57Z","volume":117,"year":"2012","publication_status":"published","publisher":"American Geophysical Union","month":"09","publication_identifier":{"issn":["0148-0227"]},"doi":"10.1029/2012jd017795","language":[{"iso":"eng"}],"oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1029/2012JD017795"}],"quality_controlled":"1","abstract":[{"text":"Distributed glacier melt models generally assume that the glacier surface consists of bare exposed ice and snow. In reality, many glaciers are wholly or partially covered in layers of debris that tend to suppress ablation rates. In this paper, an existing physically based point model for the ablation of debris-covered ice is incorporated in a distributed melt model and applied to Haut Glacier d'Arolla, Switzerland, which has three large patches of debris cover on its surface. The model is based on a 10 m resolution digital elevation model (DEM) of the area; each glacier pixel in the DEM is defined as either bare or debris-covered ice, and may be covered in snow that must be melted off before ice ablation is assumed to occur. Each debris-covered pixel is assigned a debris thickness value using probability distributions based on over 1000 manual thickness measurements. Locally observed meteorological data are used to run energy balance calculations in every pixel, using an approach suitable for snow, bare ice or debris-covered ice as appropriate. The use of the debris model significantly reduces the total ablation in the debris-covered areas, however the precise reduction is sensitive to the temperature extrapolation used in the model distribution because air near the debris surface tends to be slightly warmer than over bare ice. Overall results suggest that the debris patches, which cover 10% of the glacierized area, reduce total runoff from the glacierized part of the basin by up to 7%.","lang":"eng"}],"issue":"D18","type":"journal_article","oa_version":"Published Version","_id":"12648","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","title":"Including debris cover effects in a distributed model of glacier ablation","intvolume":" 117","day":"27","article_processing_charge":"No","scopus_import":"1","keyword":["Paleontology","Space and Planetary Science","Earth and Planetary Sciences (miscellaneous)","Atmospheric Science","Earth-Surface Processes","Geochemistry and Petrology","Soil Science","Water Science and Technology","Ecology","Aquatic Science","Forestry","Oceanography","Geophysics"],"date_published":"2012-09-27T00:00:00Z","publication":"Journal of Geophysical Research: Atmospheres","citation":{"chicago":"Reid, T. D., M. Carenzo, Francesca Pellicciotti, and B. W. Brock. “Including Debris Cover Effects in a Distributed Model of Glacier Ablation.” Journal of Geophysical Research: Atmospheres. American Geophysical Union, 2012. https://doi.org/10.1029/2012jd017795.","short":"T.D. Reid, M. Carenzo, F. Pellicciotti, B.W. Brock, Journal of Geophysical Research: Atmospheres 117 (2012).","mla":"Reid, T. D., et al. “Including Debris Cover Effects in a Distributed Model of Glacier Ablation.” Journal of Geophysical Research: Atmospheres, vol. 117, no. D18, D18105, American Geophysical Union, 2012, doi:10.1029/2012jd017795.","ieee":"T. D. Reid, M. Carenzo, F. Pellicciotti, and B. W. Brock, “Including debris cover effects in a distributed model of glacier ablation,” Journal of Geophysical Research: Atmospheres, vol. 117, no. D18. American Geophysical Union, 2012.","apa":"Reid, T. D., Carenzo, M., Pellicciotti, F., & Brock, B. W. (2012). Including debris cover effects in a distributed model of glacier ablation. Journal of Geophysical Research: Atmospheres. American Geophysical Union. https://doi.org/10.1029/2012jd017795","ista":"Reid TD, Carenzo M, Pellicciotti F, Brock BW. 2012. Including debris cover effects in a distributed model of glacier ablation. Journal of Geophysical Research: Atmospheres. 117(D18), D18105.","ama":"Reid TD, Carenzo M, Pellicciotti F, Brock BW. Including debris cover effects in a distributed model of glacier ablation. Journal of Geophysical Research: Atmospheres. 2012;117(D18). doi:10.1029/2012jd017795"},"article_type":"original"},{"oa_version":"Preprint","title":"Conditional model checking: A technique to pass information between verifiers","status":"public","_id":"1384","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"Software model checking, as an undecidable problem, has three possible outcomes: (1) the program satisfies the specification, (2) the program does not satisfy the specification, and (3) the model checker fails. The third outcome usually manifests itself in a space-out, time-out, or one component of the verification tool giving up; in all of these failing cases, significant computation is performed by the verification tool before the failure, but no result is reported. We propose to reformulate the model-checking problem as follows, in order to have the verification tool report a summary of the performed work even in case of failure: given a program and a specification, the model checker returns a condition Ψ - usually a state predicate - such that the program satisfies the specification under the condition Ψ - that is, as long as the program does not leave the states in which Ψ is satisfied. In our experiments, we investigated as one major application of conditional model checking the sequential combination of model checkers with information passing. We give the condition that one model checker produces, as input to a second conditional model checker, such that the verification problem for the second is restricted to the part of the state space that is not covered by the condition, i.e., the second model checker works on the problems that the first model checker could not solve. Our experiments demonstrate that repeated application of conditional model checkers, passing information from one model checker to the next, can significantly improve the verification results and performance, i.e., we can now verify programs that we could not verify before."}],"type":"conference","date_published":"2012-11-01T00:00:00Z","publication":"Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering","citation":{"chicago":"Beyer, Dirk, Thomas A Henzinger, Mehmet Keremoglu, and Philipp Wendler. “Conditional Model Checking: A Technique to Pass Information between Verifiers.” In Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering. ACM, 2012. https://doi.org/10.1145/2393596.2393664.","short":"D. Beyer, T.A. Henzinger, M. Keremoglu, P. Wendler, in:, Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering, ACM, 2012.","mla":"Beyer, Dirk, et al. “Conditional Model Checking: A Technique to Pass Information between Verifiers.” Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering, 57, ACM, 2012, doi:10.1145/2393596.2393664.","ieee":"D. Beyer, T. A. Henzinger, M. Keremoglu, and P. Wendler, “Conditional model checking: A technique to pass information between verifiers,” in Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering, Cary, NC, USA, 2012.","apa":"Beyer, D., Henzinger, T. A., Keremoglu, M., & Wendler, P. (2012). Conditional model checking: A technique to pass information between verifiers. In Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering. Cary, NC, USA: ACM. https://doi.org/10.1145/2393596.2393664","ista":"Beyer D, Henzinger TA, Keremoglu M, Wendler P. 2012. Conditional model checking: A technique to pass information between verifiers. Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering. FSE: Foundations of Software Engineering, 57.","ama":"Beyer D, Henzinger TA, Keremoglu M, Wendler P. Conditional model checking: A technique to pass information between verifiers. In: Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering. ACM; 2012. doi:10.1145/2393596.2393664"},"day":"01","scopus_import":1,"date_created":"2018-12-11T11:51:42Z","date_updated":"2021-01-12T06:50:18Z","author":[{"last_name":"Beyer","first_name":"Dirk","full_name":"Beyer, Dirk"},{"id":"40876CD8-F248-11E8-B48F-1D18A9856A87","orcid":"0000−0002−2985−7724","first_name":"Thomas A","last_name":"Henzinger","full_name":"Henzinger, Thomas A"},{"full_name":"Keremoglu, Mehmet","last_name":"Keremoglu","first_name":"Mehmet"},{"first_name":"Philipp","last_name":"Wendler","full_name":"Wendler, Philipp"}],"publication_status":"published","department":[{"_id":"ToHe"}],"publisher":"ACM","acknowledgement":"This research was supported by the Canadian NSERC grant RGPIN 341819-07, the ERC Advanced Grant QUAREM, and the Austrian Science Fund NFN RiSE.","year":"2012","publist_id":"5826","ec_funded":1,"article_number":"57","language":[{"iso":"eng"}],"conference":{"end_date":"2012-11-16","location":"Cary, NC, USA","start_date":"2012-11-11","name":"FSE: Foundations of Software Engineering"},"doi":"10.1145/2393596.2393664","quality_controlled":"1","project":[{"_id":"25EE3708-B435-11E9-9278-68D0E5697425","grant_number":"267989","name":"Quantitative Reactive Modeling","call_identifier":"FP7"},{"name":"Rigorous Systems Engineering","call_identifier":"FWF","_id":"25832EC2-B435-11E9-9278-68D0E5697425","grant_number":"S 11407_N23"}],"oa":1,"main_file_link":[{"url":"http://arxiv.org/abs/1109.6926","open_access":"1"}],"month":"11"},{"type":"journal_article","extern":1,"abstract":[{"text":"For G = GL 2, PGL 2, SL 2 we prove that the perverse filtration associated with the Hitchin map on the rational cohomology of the moduli space of twisted G-Higgs bundles on a compact Riemann surface C agrees with the weight filtration on the rational cohomology of the twisted G character variety of C when the cohomologies are identified via non-Abelian Hodge theory. The proof is accomplished by means of a study of the topology of the Hitchin map over the locus of integral spectral curves.","lang":"eng"}],"publist_id":"5727","issue":"3","status":"public","publication_status":"published","title":"Topology of hitchin systems and Hodge theory of character varieties: The case A 1","intvolume":" 175","publisher":"Princeton University Press","_id":"1472","acknowledgement":"Mark Andrea A. de Cataldo was partially supported by N.S.A. and N.S.F. Tamás Hausel was supported by a Royal Society University Research Fellowship. Luca Migliorini was partially supported by PRIN 2007 project \"Spazi di moduli e teoria di Lie\"","year":"2012","date_created":"2018-12-11T11:52:13Z","date_updated":"2021-01-12T06:50:59Z","volume":175,"author":[{"full_name":"De Cataldo, Mark A","last_name":"De Cataldo","first_name":"Mark"},{"first_name":"Tamas","last_name":"Hausel","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","full_name":"Tamas Hausel"},{"first_name":"Luca","last_name":"Migliorini","full_name":"Migliorini, Luca"}],"day":"01","month":"05","quality_controlled":0,"page":"1329 - 1407","publication":"Annals of Mathematics","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1004.1420"}],"oa":1,"citation":{"ama":"De Cataldo M, Hausel T, Migliorini L. Topology of hitchin systems and Hodge theory of character varieties: The case A 1. Annals of Mathematics. 2012;175(3):1329-1407. doi:10.4007/annals.2012.175.3.7","apa":"De Cataldo, M., Hausel, T., & Migliorini, L. (2012). Topology of hitchin systems and Hodge theory of character varieties: The case A 1. Annals of Mathematics. Princeton University Press. https://doi.org/10.4007/annals.2012.175.3.7","ieee":"M. De Cataldo, T. Hausel, and L. Migliorini, “Topology of hitchin systems and Hodge theory of character varieties: The case A 1,” Annals of Mathematics, vol. 175, no. 3. Princeton University Press, pp. 1329–1407, 2012.","ista":"De Cataldo M, Hausel T, Migliorini L. 2012. Topology of hitchin systems and Hodge theory of character varieties: The case A 1. Annals of Mathematics. 175(3), 1329–1407.","short":"M. De Cataldo, T. Hausel, L. Migliorini, Annals of Mathematics 175 (2012) 1329–1407.","mla":"De Cataldo, Mark, et al. “Topology of Hitchin Systems and Hodge Theory of Character Varieties: The Case A 1.” Annals of Mathematics, vol. 175, no. 3, Princeton University Press, 2012, pp. 1329–407, doi:10.4007/annals.2012.175.3.7.","chicago":"De Cataldo, Mark, Tamás Hausel, and Luca Migliorini. “Topology of Hitchin Systems and Hodge Theory of Character Varieties: The Case A 1.” Annals of Mathematics. Princeton University Press, 2012. https://doi.org/10.4007/annals.2012.175.3.7."},"date_published":"2012-05-01T00:00:00Z","doi":"10.4007/annals.2012.175.3.7"},{"type":"journal_article","extern":1,"publist_id":"5726","issue":"3","abstract":[{"lang":"eng","text":"Given a possibly reducible and non-reduced spectral cover π: X → C over a smooth projective complex curve C we determine the group of connected components of the Prym variety Prym(X/C). As an immediate application we show that the finite group of n-torsion points of the Jacobian of C acts trivially on the cohomology of the twisted SL n-Higgs moduli space up to the degree which is predicted by topological mirror symmetry. In particular this yields a new proof of a result of Harder-Narasimhan, showing that this finite group acts trivially on the cohomology of the twisted SL n stable bundle moduli space."}],"publisher":"University of Warwick","intvolume":" 16","status":"public","publication_status":"published","title":"Prym varieties of spectral covers","year":"2012","_id":"1471","volume":16,"date_updated":"2021-01-12T06:50:58Z","date_created":"2018-12-11T11:52:13Z","author":[{"id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","first_name":"Tamas","last_name":"Hausel","full_name":"Tamas Hausel"},{"first_name":"Christian","last_name":"Pauly","full_name":"Pauly, Christian"}],"day":"01","month":"08","page":"1609 - 1638","quality_controlled":0,"citation":{"short":"T. Hausel, C. Pauly, Geometry and Topology 16 (2012) 1609–1638.","mla":"Hausel, Tamás, and Christian Pauly. “Prym Varieties of Spectral Covers.” Geometry and Topology, vol. 16, no. 3, University of Warwick, 2012, pp. 1609–38, doi:10.2140/gt.2012.16.1609.","chicago":"Hausel, Tamás, and Christian Pauly. “Prym Varieties of Spectral Covers.” Geometry and Topology. University of Warwick, 2012. https://doi.org/10.2140/gt.2012.16.1609.","ama":"Hausel T, Pauly C. Prym varieties of spectral covers. Geometry and Topology. 2012;16(3):1609-1638. doi:10.2140/gt.2012.16.1609","apa":"Hausel, T., & Pauly, C. (2012). Prym varieties of spectral covers. Geometry and Topology. University of Warwick. https://doi.org/10.2140/gt.2012.16.1609","ieee":"T. Hausel and C. Pauly, “Prym varieties of spectral covers,” Geometry and Topology, vol. 16, no. 3. University of Warwick, pp. 1609–1638, 2012.","ista":"Hausel T, Pauly C. 2012. Prym varieties of spectral covers. Geometry and Topology. 16(3), 1609–1638."},"main_file_link":[{"url":"http://arxiv.org/abs/1012.4748","open_access":"1"}],"oa":1,"publication":"Geometry and Topology","date_published":"2012-08-01T00:00:00Z","doi":"10.2140/gt.2012.16.1609"},{"type":"journal_article","extern":1,"abstract":[{"text":"For given non-zero integers a, b, q we investigate the density of solutions (x, y) ∈ ℤ2 to the binary cubic congruence ax2 + by3 ≡ 0 mod q, and use it to establish the Manin conjecture for a singular del Pezzo surface of degree 2 defined over ℚ.","lang":"eng"}],"issue":"680","publist_id":"7750","publication_status":"published","title":"Inhomogeneous cubic congruences and rational points on del Pezzo surfaces","status":"public","intvolume":" 2013","publisher":"Walter de Gruyter","_id":"171","year":"2012","date_created":"2018-12-11T11:45:00Z","date_updated":"2021-01-12T06:52:41Z","volume":2013,"author":[{"first_name":"Timothy D","last_name":"Browning","id":"35827D50-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8314-0177","full_name":"Timothy Browning"},{"full_name":"Baier, Stephan","first_name":"Stephan","last_name":"Baier"}],"month":"04","day":"03","quality_controlled":0,"page":"1 - 65","publication":"Journal fur die Reine und Angewandte Mathematik","oa":1,"main_file_link":[{"url":"https://arxiv.org/abs/1011.3434","open_access":"1"}],"citation":{"ista":"Browning TD, Baier S. 2012. Inhomogeneous cubic congruences and rational points on del Pezzo surfaces. Journal fur die Reine und Angewandte Mathematik. 2013(680), 1–65.","apa":"Browning, T. D., & Baier, S. (2012). Inhomogeneous cubic congruences and rational points on del Pezzo surfaces. Journal Fur Die Reine Und Angewandte Mathematik. Walter de Gruyter. https://doi.org/10.1515/crelle.2012.039","ieee":"T. D. Browning and S. Baier, “Inhomogeneous cubic congruences and rational points on del Pezzo surfaces,” Journal fur die Reine und Angewandte Mathematik, vol. 2013, no. 680. Walter de Gruyter, pp. 1–65, 2012.","ama":"Browning TD, Baier S. Inhomogeneous cubic congruences and rational points on del Pezzo surfaces. Journal fur die Reine und Angewandte Mathematik. 2012;2013(680):1-65. doi:https://doi.org/10.1515/crelle.2012.039","chicago":"Browning, Timothy D, and Stephan Baier. “Inhomogeneous Cubic Congruences and Rational Points on Del Pezzo Surfaces.” Journal Fur Die Reine Und Angewandte Mathematik. Walter de Gruyter, 2012. https://doi.org/10.1515/crelle.2012.039.","mla":"Browning, Timothy D., and Stephan Baier. “Inhomogeneous Cubic Congruences and Rational Points on Del Pezzo Surfaces.” Journal Fur Die Reine Und Angewandte Mathematik, vol. 2013, no. 680, Walter de Gruyter, 2012, pp. 1–65, doi:https://doi.org/10.1515/crelle.2012.039.","short":"T.D. Browning, S. Baier, Journal Fur Die Reine Und Angewandte Mathematik 2013 (2012) 1–65."},"date_published":"2012-04-03T00:00:00Z","doi":"https://doi.org/10.1515/crelle.2012.039"},{"publication":"Science","citation":{"ama":"Kicheva A, Cohen M, Briscoe J. Developmental pattern formation: Insights from physics and biology. Science. 2012;338(6104):210-212. doi:10.1126/science.1225182","apa":"Kicheva, A., Cohen, M., & Briscoe, J. (2012). Developmental pattern formation: Insights from physics and biology. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1225182","ieee":"A. Kicheva, M. Cohen, and J. Briscoe, “Developmental pattern formation: Insights from physics and biology,” Science, vol. 338, no. 6104. American Association for the Advancement of Science, pp. 210–212, 2012.","ista":"Kicheva A, Cohen M, Briscoe J. 2012. Developmental pattern formation: Insights from physics and biology. Science. 338(6104), 210–212.","short":"A. Kicheva, M. Cohen, J. Briscoe, Science 338 (2012) 210–212.","mla":"Kicheva, Anna, et al. “Developmental Pattern Formation: Insights from Physics and Biology.” Science, vol. 338, no. 6104, American Association for the Advancement of Science, 2012, pp. 210–12, doi:10.1126/science.1225182.","chicago":"Kicheva, Anna, Michael Cohen, and James Briscoe. “Developmental Pattern Formation: Insights from Physics and Biology.” Science. American Association for the Advancement of Science, 2012. https://doi.org/10.1126/science.1225182."},"quality_controlled":0,"page":"210 - 212","date_published":"2012-10-12T00:00:00Z","doi":"10.1126/science.1225182","day":"12","month":"10","year":"2012","_id":"1725","acknowledgement":"Funding provided by the Medical Research Council (UK). ","status":"public","title":"Developmental pattern formation: Insights from physics and biology","publication_status":"published","publisher":"American Association for the Advancement of Science","intvolume":" 338","author":[{"orcid":"0000-0003-4509-4998","id":"3959A2A0-F248-11E8-B48F-1D18A9856A87","last_name":"Kicheva","first_name":"Anna","full_name":"Anna Kicheva"},{"full_name":"Cohen, Michael H","first_name":"Michael","last_name":"Cohen"},{"last_name":"Briscoe","first_name":"James","full_name":"Briscoe, James"}],"date_created":"2018-12-11T11:53:40Z","date_updated":"2021-01-12T06:52:47Z","volume":338,"type":"journal_article","abstract":[{"text":"The spatial organization of cell fates during development involves the interpretation of morphogen gradients by cellular signaling cascades and transcriptional networks. Recent studies use biophysical models, genetics, and quantitative imaging to unravel how tissue-level morphogen behavior arises from subcellular events. Moreover, data from several systems show that morphogen gradients, downstream signaling, and the activity of cell-intrinsic transcriptional networks change dynamically during pattern formation. Studies from Drosophila and now also vertebrates suggest that transcriptional network dynamics are central to the generation of gene expression patterns. Together, this leads to the view that pattern formation is an emergent behavior that results from the coordination of events occurring across molecular, cellular, and tissue scales. The development of novel approaches to study this complex process remains a challenge.","lang":"eng"}],"publist_id":"5404","issue":"6104","extern":1},{"extern":1,"abstract":[{"text":"Self-assembled Ge wires with a height of only 3 unit cells and a length of up to 2 micrometers were grown on Si(001) by means of a catalyst-free method based on molecular beam epitaxy. The wires grow horizontally along either the [100] or the [010] direction. On atomically flat surfaces, they exhibit a highly uniform, triangular cross section. A simple thermodynamic model accounts for the existence of a preferential base width for longitudinal expansion, in quantitative agreement with the experimental findings. Despite the absence of intentional doping, the first transistor-type devices made from single wires show low-resistive electrical contacts and single-hole transport at sub-Kelvin temperatures. In view of their exceptionally small and self-defined cross section, these Ge wires hold promise for the realization of hole systems with exotic properties and provide a new development route for silicon-based nanoelectronics.","lang":"eng"}],"publist_id":"5367","issue":"8","type":"journal_article","date_updated":"2021-01-12T06:53:00Z","date_created":"2018-12-11T11:53:51Z","volume":109,"author":[{"last_name":"Zhang","first_name":"Jianjun","full_name":"Zhang, Jianjun"},{"full_name":"Georgios Katsaros","first_name":"Georgios","last_name":"Katsaros","id":"38DB5788-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Montalenti","first_name":"Francesco","full_name":"Montalenti, Francesco"},{"first_name":"Daniele","last_name":"Scopece","full_name":"Scopece, Daniele"},{"first_name":"Roman","last_name":"Rezaev","full_name":"Rezaev, Roman O"},{"first_name":"Christine","last_name":"Mickel","full_name":"Mickel, Christine H"},{"full_name":"Rellinghaus, Bernd","first_name":"Bernd","last_name":"Rellinghaus"},{"first_name":"Leo","last_name":"Miglio","full_name":"Miglio, Leo P"},{"last_name":"De Franceschi","first_name":"Silvano","full_name":"De Franceschi, Silvano"},{"full_name":"Rastelli, Armando","first_name":"Armando","last_name":"Rastelli"},{"last_name":"Schmidt","first_name":"Oliver","full_name":"Schmidt, Oliver G"}],"status":"public","publication_status":"published","title":"Monolithic growth of ultrathin Ge nanowires on Si(001) ","publisher":"American Physical Society","intvolume":" 109","acknowledgement":"We acknowledge the financial support by the DFG SPP1386, P. Chen and D. J. Thurmer for MBE assistance, R. Wacquez for providing the ultrathin SOI wafers, and G. Bauer, Y. Hu, X. Jehl, S. Kiravittaya, C. Klöffel, E. J. H. Lee, F. Liu, D. Loss, and S. Mahapatra for helpful discussions. G. K. acknowledges support from the European commission via a Marie Curie Carrer Integration Grant. S. D. F. acknowledges support from the European Research Council through the starting grant program","_id":"1757","year":"2012","month":"08","day":"23","date_published":"2012-08-23T00:00:00Z","doi":"10.1103/PhysRevLett.109.085502","quality_controlled":0,"publication":"Physical Review Letters","main_file_link":[{"url":"http://arxiv.org/abs/1208.0666","open_access":"1"}],"citation":{"short":"J. Zhang, G. Katsaros, F. Montalenti, D. Scopece, R. Rezaev, C. Mickel, B. Rellinghaus, L. Miglio, S. De Franceschi, A. Rastelli, O. Schmidt, Physical Review Letters 109 (2012).","mla":"Zhang, Jianjun, et al. “Monolithic Growth of Ultrathin Ge Nanowires on Si(001) .” Physical Review Letters, vol. 109, no. 8, American Physical Society, 2012, doi:10.1103/PhysRevLett.109.085502.","chicago":"Zhang, Jianjun, Georgios Katsaros, Francesco Montalenti, Daniele Scopece, Roman Rezaev, Christine Mickel, Bernd Rellinghaus, et al. “Monolithic Growth of Ultrathin Ge Nanowires on Si(001) .” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/PhysRevLett.109.085502.","ama":"Zhang J, Katsaros G, Montalenti F, et al. Monolithic growth of ultrathin Ge nanowires on Si(001) . Physical Review Letters. 2012;109(8). doi:10.1103/PhysRevLett.109.085502","ieee":"J. Zhang et al., “Monolithic growth of ultrathin Ge nanowires on Si(001) ,” Physical Review Letters, vol. 109, no. 8. American Physical Society, 2012.","apa":"Zhang, J., Katsaros, G., Montalenti, F., Scopece, D., Rezaev, R., Mickel, C., … Schmidt, O. (2012). Monolithic growth of ultrathin Ge nanowires on Si(001) . Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.109.085502","ista":"Zhang J, Katsaros G, Montalenti F, Scopece D, Rezaev R, Mickel C, Rellinghaus B, Miglio L, De Franceschi S, Rastelli A, Schmidt O. 2012. Monolithic growth of ultrathin Ge nanowires on Si(001) . Physical Review Letters. 109(8)."},"oa":1},{"type":"journal_article","extern":1,"abstract":[{"text":"We studied the low-energy states of spin-1/2 quantum dots defined in InAs/InP nanowires and coupled to aluminum superconducting leads. By varying the superconducting gap Δ with a magnetic field B we investigated the transition from strong coupling Δ≪T K to weak-coupling Δ≫T K, where T K is the Kondo temperature. Below the critical field, we observe a persisting zero-bias Kondo resonance that vanishes only for low B or higher temperatures, leaving the room to more robust subgap structures at bias voltages between Δ and 2Δ. For strong and approximately symmetric tunnel couplings, a Josephson supercurrent is observed in addition to the Kondo peak. We ascribe the coexistence of a Kondo resonance and a superconducting gap to a significant density of intragap quasiparticle states, and the finite-bias subgap structures to tunneling through Shiba states. Our results, supported by numerical calculations, own relevance also in relation to tunnel-spectroscopy experiments aiming at the observation of Majorana fermions in hybrid nanostructures.","lang":"eng"}],"publist_id":"5366","issue":"18","publication_status":"published","status":"public","title":"Zero-bias anomaly in a nanowire quantum dot coupled to superconductors","publisher":"American Physical Society","intvolume":" 109","_id":"1758","acknowledgement":"This work was supported by the EU Marie Curie program and by the Agence Nationale de la Recherche. R. A. acknowledges support from the Spanish Ministry of Science and Innovation through Grant No. FIS2009-08744","year":"2012","date_created":"2018-12-11T11:53:51Z","date_updated":"2021-01-12T06:53:01Z","volume":109,"author":[{"full_name":"Lee, Eduardo J","first_name":"Eduardo","last_name":"Lee"},{"last_name":"Jiang","first_name":"Xiaocheng","full_name":"Jiang, Xiaocheng"},{"first_name":"Ramón","last_name":"Aguado","full_name":"Aguado, Ramón"},{"full_name":"Georgios Katsaros","last_name":"Katsaros","first_name":"Georgios","id":"38DB5788-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Charles","last_name":"Lieber","full_name":"Lieber, Charles M"},{"last_name":"De Franceschi","first_name":"Silvano","full_name":"De Franceschi, Silvano"}],"month":"10","day":"31","quality_controlled":0,"publication":"Physical Review Letters","oa":1,"citation":{"chicago":"Lee, Eduardo, Xiaocheng Jiang, Ramón Aguado, Georgios Katsaros, Charles Lieber, and Silvano De Franceschi. “Zero-Bias Anomaly in a Nanowire Quantum Dot Coupled to Superconductors.” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/PhysRevLett.109.186802.","mla":"Lee, Eduardo, et al. “Zero-Bias Anomaly in a Nanowire Quantum Dot Coupled to Superconductors.” Physical Review Letters, vol. 109, no. 18, American Physical Society, 2012, doi:10.1103/PhysRevLett.109.186802.","short":"E. Lee, X. Jiang, R. Aguado, G. Katsaros, C. Lieber, S. De Franceschi, Physical Review Letters 109 (2012).","ista":"Lee E, Jiang X, Aguado R, Katsaros G, Lieber C, De Franceschi S. 2012. Zero-bias anomaly in a nanowire quantum dot coupled to superconductors. Physical Review Letters. 109(18).","apa":"Lee, E., Jiang, X., Aguado, R., Katsaros, G., Lieber, C., & De Franceschi, S. (2012). Zero-bias anomaly in a nanowire quantum dot coupled to superconductors. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.109.186802","ieee":"E. Lee, X. Jiang, R. Aguado, G. Katsaros, C. Lieber, and S. De Franceschi, “Zero-bias anomaly in a nanowire quantum dot coupled to superconductors,” Physical Review Letters, vol. 109, no. 18. American Physical Society, 2012.","ama":"Lee E, Jiang X, Aguado R, Katsaros G, Lieber C, De Franceschi S. Zero-bias anomaly in a nanowire quantum dot coupled to superconductors. Physical Review Letters. 2012;109(18). doi:10.1103/PhysRevLett.109.186802"},"main_file_link":[{"url":"http://arxiv.org/abs/1207.1259","open_access":"1"}],"doi":"10.1103/PhysRevLett.109.186802","date_published":"2012-10-31T00:00:00Z"},{"issue":"6","publist_id":"5368","abstract":[{"lang":"eng","text":"We report on the electronic transport properties of multiple-gate devices fabricated from undoped silicon nanowires. Understanding and control of the relevant transport mechanisms was achieved by means of local electrostatic gating and temperature-dependent measurements. The roles of the source/drain contacts and of the silicon channel could be independently evaluated and tuned. Wrap gates surrounding the silicide-silicon contact interfaces were proved to be effective in inducing a full suppression of the contact Schottky barriers, thereby enabling carrier injection down to liquid helium temperature. By independently tuning the effective Schottky barrier heights, a variety of reconfigurable device functionalities could be obtained. In particular, the same nanowire device could be configured to work as a Schottky barrier transistor, a Schottky diode, or a p-n diode with tunable polarities. This versatility was eventually exploited to realize a NAND logic gate with gain well above one."}],"extern":1,"type":"journal_article","author":[{"full_name":"Mongillo, Massimo","first_name":"Massimo","last_name":"Mongillo"},{"full_name":"Spathis, Panayotis N","last_name":"Spathis","first_name":"Panayotis"},{"id":"38DB5788-F248-11E8-B48F-1D18A9856A87","last_name":"Katsaros","first_name":"Georgios","full_name":"Georgios Katsaros"},{"full_name":"Gentile, Pascal","last_name":"Gentile","first_name":"Pascal"},{"first_name":"Silvano","last_name":"De Franceschi","full_name":"De Franceschi, Silvano"}],"volume":12,"date_created":"2018-12-11T11:53:50Z","date_updated":"2021-01-12T06:53:00Z","year":"2012","_id":"1756","acknowledgement":"This work was supported by the Agence Nationale de la Recherche (ANR) through the ACCESS and COHESION projects and by the European Commission through the Chemtronics program MEST-CT-2005-020513","publisher":"American Chemical Society","intvolume":" 12","title":"Multifunctional devices and logic gates with undoped silicon nanowires","status":"public","publication_status":"published","month":"06","day":"13","doi":"10.1021/nl300930m","date_published":"2012-06-13T00:00:00Z","oa":1,"citation":{"ama":"Mongillo M, Spathis P, Katsaros G, Gentile P, De Franceschi S. Multifunctional devices and logic gates with undoped silicon nanowires. Nano Letters. 2012;12(6):3074-3079. doi:10.1021/nl300930m","ista":"Mongillo M, Spathis P, Katsaros G, Gentile P, De Franceschi S. 2012. Multifunctional devices and logic gates with undoped silicon nanowires. Nano Letters. 12(6), 3074–3079.","ieee":"M. Mongillo, P. Spathis, G. Katsaros, P. Gentile, and S. De Franceschi, “Multifunctional devices and logic gates with undoped silicon nanowires,” Nano Letters, vol. 12, no. 6. American Chemical Society, pp. 3074–3079, 2012.","apa":"Mongillo, M., Spathis, P., Katsaros, G., Gentile, P., & De Franceschi, S. (2012). Multifunctional devices and logic gates with undoped silicon nanowires. Nano Letters. American Chemical Society. https://doi.org/10.1021/nl300930m","mla":"Mongillo, Massimo, et al. “Multifunctional Devices and Logic Gates with Undoped Silicon Nanowires.” Nano Letters, vol. 12, no. 6, American Chemical Society, 2012, pp. 3074–79, doi:10.1021/nl300930m.","short":"M. Mongillo, P. Spathis, G. Katsaros, P. Gentile, S. De Franceschi, Nano Letters 12 (2012) 3074–3079.","chicago":"Mongillo, Massimo, Panayotis Spathis, Georgios Katsaros, Pascal Gentile, and Silvano De Franceschi. “Multifunctional Devices and Logic Gates with Undoped Silicon Nanowires.” Nano Letters. American Chemical Society, 2012. https://doi.org/10.1021/nl300930m."},"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1208.1465"}],"publication":"Nano Letters","page":"3074 - 3079","quality_controlled":0},{"acknowledgement":"This work was supported by the Swiss National Science Foundation (SNF) and the EU IP SOLID","_id":"1783","year":"2012","intvolume":" 86","publisher":"American Physical Society","status":"public","title":"Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics","publication_status":"published","author":[{"full_name":"Mlynek, Jonas A","first_name":"Jonas","last_name":"Mlynek"},{"last_name":"Abdumalikov","first_name":"Abdufarrukh","full_name":"Abdumalikov, Abdufarrukh A"},{"full_name":"Johannes Fink","first_name":"Johannes M","last_name":"Fink","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8112-028X"},{"full_name":"Steffen, L. Kraig","first_name":"L.","last_name":"Steffen"},{"first_name":"Matthias","last_name":"Baur","full_name":"Baur, Matthias P"},{"last_name":"Lang","first_name":"C","full_name":"Lang, C"},{"full_name":"Van Loo, Arjan F","last_name":"Van Loo","first_name":"Arjan"},{"last_name":"Wallraff","first_name":"Andreas","full_name":"Wallraff, Andreas"}],"volume":86,"date_created":"2018-12-11T11:53:59Z","date_updated":"2021-01-12T06:53:10Z","type":"journal_article","publist_id":"5332","issue":"5","abstract":[{"lang":"eng","text":"Nonlinearity and entanglement are two important properties by which physical systems can be identified as nonclassical. We study the dynamics of the resonant interaction of up to N=3 two-level systems and a single mode of the electromagnetic field sharing a single excitation dynamically. We observe coherent vacuum Rabi oscillations and their nonlinear √N speedup by tracking the populations of all qubits and the resonator in time. We use quantum state tomography to show explicitly that the dynamics generates maximally entangled states of the W class in a time limited only by the collective interaction rate. We use an entanglement witness and the 3-tangle to characterize the state whose fidelity F=78% is limited in our experiments by crosstalk arising during the simultaneous qubit manipulations which is absent in a sequential approach with F=91%."}],"extern":1,"oa":1,"citation":{"ista":"Mlynek J, Abdumalikov A, Fink JM, Steffen L, Baur M, Lang C, Van Loo A, Wallraff A. 2012. Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics. Physical Review A - Atomic, Molecular, and Optical Physics. 86(5).","ieee":"J. Mlynek et al., “Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics,” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 86, no. 5. American Physical Society, 2012.","apa":"Mlynek, J., Abdumalikov, A., Fink, J. M., Steffen, L., Baur, M., Lang, C., … Wallraff, A. (2012). Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics. Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society. https://doi.org/10.1103/PhysRevA.86.053838","ama":"Mlynek J, Abdumalikov A, Fink JM, et al. Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics. Physical Review A - Atomic, Molecular, and Optical Physics. 2012;86(5). doi:10.1103/PhysRevA.86.053838","chicago":"Mlynek, Jonas, Abdufarrukh Abdumalikov, Johannes M Fink, L. Steffen, Matthias Baur, C Lang, Arjan Van Loo, and Andreas Wallraff. “Demonstrating W-Type Entanglement of Dicke States in Resonant Cavity Quantum Electrodynamics.” Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society, 2012. https://doi.org/10.1103/PhysRevA.86.053838.","mla":"Mlynek, Jonas, et al. “Demonstrating W-Type Entanglement of Dicke States in Resonant Cavity Quantum Electrodynamics.” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 86, no. 5, American Physical Society, 2012, doi:10.1103/PhysRevA.86.053838.","short":"J. Mlynek, A. Abdumalikov, J.M. Fink, L. Steffen, M. Baur, C. Lang, A. Van Loo, A. Wallraff, Physical Review A - Atomic, Molecular, and Optical Physics 86 (2012)."},"main_file_link":[{"url":"http://arxiv.org/abs/1202.5191","open_access":"1"}],"publication":"Physical Review A - Atomic, Molecular, and Optical Physics","quality_controlled":0,"date_published":"2012-11-30T00:00:00Z","doi":"10.1103/PhysRevA.86.053838","day":"30","month":"11"},{"type":"journal_article","abstract":[{"lang":"eng","text":"Steering a quantum harmonic oscillator state along cyclic trajectories leads to a path-dependent geometric phase. Here we describe its experimental observation in an electronic harmonic oscillator. We use a superconducting qubit as a nonlinear probe of the phase, which is otherwise unobservable due to the linearity of the oscillator. We show that the geometric phase is, for a variety of cyclic paths, proportional to the area enclosed in the quadrature plane. At the transition to the nonadiabatic regime, we study corrections to the phase and dephasing of the qubit caused by qubit-resonator entanglement. In particular, we identify parameters for which this dephasing mechanism is negligible even in the nonadiabatic regime. The demonstrated controllability makes our system a versatile tool to study geometric phases in open quantum systems and to investigate their potential for quantum information processing."}],"publist_id":"5333","issue":"17","extern":1,"_id":"1782","year":"2012","acknowledgement":"This work is supported by the EU project GEOMDISS, the Austrian Science Foundation (S. F.), and the Swiss National Science Foundation (SNSF)","title":"Geometric phase and nonadiabatic effects in an electronic harmonic oscillator","status":"public","publication_status":"published","intvolume":" 108","publisher":"American Physical Society","author":[{"first_name":"M","last_name":"Pechal","full_name":"Pechal, M"},{"full_name":"Berger, Stefan T","last_name":"Berger","first_name":"Stefan"},{"first_name":"Abdufarrukh","last_name":"Abdumalikov","full_name":"Abdumalikov, Abdufarrukh A"},{"orcid":"0000-0001-8112-028X","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","last_name":"Fink","first_name":"Johannes M","full_name":"Johannes Fink"},{"full_name":"Mlynek, Jonas A","first_name":"Jonas","last_name":"Mlynek"},{"last_name":"Steffen","first_name":"L.","full_name":"Steffen, L. Kraig"},{"first_name":"Andreas","last_name":"Wallraff","full_name":"Wallraff, Andreas"},{"full_name":"Filipp, Stefan","last_name":"Filipp","first_name":"Stefan"}],"date_updated":"2021-01-12T06:53:10Z","date_created":"2018-12-11T11:53:59Z","volume":108,"day":"23","month":"04","publication":"Physical Review Letters","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1109.1157"}],"oa":1,"citation":{"ama":"Pechal M, Berger S, Abdumalikov A, et al. Geometric phase and nonadiabatic effects in an electronic harmonic oscillator. Physical Review Letters. 2012;108(17). doi:10.1103/PhysRevLett.108.170401","ista":"Pechal M, Berger S, Abdumalikov A, Fink JM, Mlynek J, Steffen L, Wallraff A, Filipp S. 2012. Geometric phase and nonadiabatic effects in an electronic harmonic oscillator. Physical Review Letters. 108(17).","ieee":"M. Pechal et al., “Geometric phase and nonadiabatic effects in an electronic harmonic oscillator,” Physical Review Letters, vol. 108, no. 17. American Physical Society, 2012.","apa":"Pechal, M., Berger, S., Abdumalikov, A., Fink, J. M., Mlynek, J., Steffen, L., … Filipp, S. (2012). Geometric phase and nonadiabatic effects in an electronic harmonic oscillator. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.108.170401","mla":"Pechal, M., et al. “Geometric Phase and Nonadiabatic Effects in an Electronic Harmonic Oscillator.” Physical Review Letters, vol. 108, no. 17, American Physical Society, 2012, doi:10.1103/PhysRevLett.108.170401.","short":"M. Pechal, S. Berger, A. Abdumalikov, J.M. Fink, J. Mlynek, L. Steffen, A. Wallraff, S. Filipp, Physical Review Letters 108 (2012).","chicago":"Pechal, M, Stefan Berger, Abdufarrukh Abdumalikov, Johannes M Fink, Jonas Mlynek, L. Steffen, Andreas Wallraff, and Stefan Filipp. “Geometric Phase and Nonadiabatic Effects in an Electronic Harmonic Oscillator.” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/PhysRevLett.108.170401."},"quality_controlled":0,"doi":"10.1103/PhysRevLett.108.170401","date_published":"2012-04-23T00:00:00Z"},{"publisher":"American Physical Society","intvolume":" 109","publication_status":"published","status":"public","title":"Observation of entanglement between itinerant microwave photons and a superconducting qubit","acknowledgement":"This work was supported by the European Research Council (ERC) through a Starting Grant and by ETHZ","_id":"1784","year":"2012","volume":109,"date_created":"2018-12-11T11:53:59Z","date_updated":"2021-01-12T06:53:10Z","author":[{"full_name":"Eichler, Christopher","first_name":"Christopher","last_name":"Eichler"},{"first_name":"C","last_name":"Lang","full_name":"Lang, C"},{"full_name":"Johannes Fink","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8112-028X","first_name":"Johannes M","last_name":"Fink"},{"full_name":"Govenius, J","last_name":"Govenius","first_name":"J"},{"full_name":"Filipp, Stefan","first_name":"Stefan","last_name":"Filipp"},{"full_name":"Wallraff, Andreas","last_name":"Wallraff","first_name":"Andreas"}],"type":"journal_article","extern":1,"publist_id":"5330","issue":"24","abstract":[{"lang":"eng","text":"A localized qubit entangled with a propagating quantum field is well suited to study nonlocal aspects of quantum mechanics and may also provide a channel to communicate between spatially separated nodes in a quantum network. Here, we report the on-demand generation and characterization of Bell-type entangled states between a superconducting qubit and propagating microwave fields composed of zero-, one-, and two-photon Fock states. Using low noise linear amplification and efficient data acquisition we extract all relevant correlations between the qubit and the photon states and demonstrate entanglement with high fidelity."}],"quality_controlled":0,"main_file_link":[{"url":"http://arxiv.org/abs/1209.0441","open_access":"0"}],"citation":{"short":"C. Eichler, C. Lang, J.M. Fink, J. Govenius, S. Filipp, A. Wallraff, Physical Review Letters 109 (2012).","mla":"Eichler, Christopher, et al. “Observation of Entanglement between Itinerant Microwave Photons and a Superconducting Qubit.” Physical Review Letters, vol. 109, no. 24, American Physical Society, 2012, doi:10.1103/PhysRevLett.109.240501.","chicago":"Eichler, Christopher, C Lang, Johannes M Fink, J Govenius, Stefan Filipp, and Andreas Wallraff. “Observation of Entanglement between Itinerant Microwave Photons and a Superconducting Qubit.” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/PhysRevLett.109.240501.","ama":"Eichler C, Lang C, Fink JM, Govenius J, Filipp S, Wallraff A. Observation of entanglement between itinerant microwave photons and a superconducting qubit. Physical Review Letters. 2012;109(24). doi:10.1103/PhysRevLett.109.240501","ieee":"C. Eichler, C. Lang, J. M. Fink, J. Govenius, S. Filipp, and A. Wallraff, “Observation of entanglement between itinerant microwave photons and a superconducting qubit,” Physical Review Letters, vol. 109, no. 24. American Physical Society, 2012.","apa":"Eichler, C., Lang, C., Fink, J. M., Govenius, J., Filipp, S., & Wallraff, A. (2012). Observation of entanglement between itinerant microwave photons and a superconducting qubit. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.109.240501","ista":"Eichler C, Lang C, Fink JM, Govenius J, Filipp S, Wallraff A. 2012. Observation of entanglement between itinerant microwave photons and a superconducting qubit. Physical Review Letters. 109(24)."},"publication":"Physical Review Letters","doi":"10.1103/PhysRevLett.109.240501","date_published":"2012-12-10T00:00:00Z","day":"10","month":"12"},{"citation":{"short":"S. Siegert, E. Cabuy, B. Scherf, H. Kohler, S. Panda, Y. Le, H. Fehling, D. Gaidatzis, M. Stadler, B. Roska, Nature Neuroscience 15 (2012) 487–495.","mla":"Siegert, Sandra, et al. “Transcriptional Code and Disease Map for Adult Retinal Cell Types.” Nature Neuroscience, vol. 15, no. 3, Nature Publishing Group, 2012, pp. 487–95, doi:10.1038/nn.3032.","chicago":"Siegert, Sandra, Erik Cabuy, Brigitte Scherf, Hubertus Kohler, Satchidananda Panda, Yunzheng Le, Hans Fehling, Dimos Gaidatzis, Michael Stadler, and Botond Roska. “Transcriptional Code and Disease Map for Adult Retinal Cell Types.” Nature Neuroscience. Nature Publishing Group, 2012. https://doi.org/10.1038/nn.3032.","ama":"Siegert S, Cabuy E, Scherf B, et al. Transcriptional code and disease map for adult retinal cell types. Nature Neuroscience. 2012;15(3):487-495. doi:10.1038/nn.3032","ieee":"S. Siegert et al., “Transcriptional code and disease map for adult retinal cell types,” Nature Neuroscience, vol. 15, no. 3. Nature Publishing Group, pp. 487–495, 2012.","apa":"Siegert, S., Cabuy, E., Scherf, B., Kohler, H., Panda, S., Le, Y., … Roska, B. (2012). Transcriptional code and disease map for adult retinal cell types. Nature Neuroscience. Nature Publishing Group. https://doi.org/10.1038/nn.3032","ista":"Siegert S, Cabuy E, Scherf B, Kohler H, Panda S, Le Y, Fehling H, Gaidatzis D, Stadler M, Roska B. 2012. Transcriptional code and disease map for adult retinal cell types. Nature Neuroscience. 15(3), 487–495."},"publication":"Nature Neuroscience","page":"487 - 495","quality_controlled":0,"date_published":"2012-03-01T00:00:00Z","doi":"10.1038/nn.3032","month":"03","day":"01","acknowledgement":"The study was supported by Friedrich Miescher Institute funds, Alcon award, a National Center of Competence in Research Genetics grant, a European Research Council grant, a Swiss-Hungarian grant, and RETICIRC, TREATRUSH, SEEBETTER and OPTONEURO grants from the European Union to B.R.","_id":"1801","year":"2012","publisher":"Nature Publishing Group","intvolume":" 15","publication_status":"published","status":"public","title":"Transcriptional code and disease map for adult retinal cell types","author":[{"full_name":"Sandra Siegert","last_name":"Siegert","first_name":"Sandra","orcid":"0000-0001-8635-0877","id":"36ACD32E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Cabuy, Erik","first_name":"Erik","last_name":"Cabuy"},{"last_name":"Scherf","first_name":"Brigitte","full_name":"Scherf, Brigitte G"},{"last_name":"Kohler","first_name":"Hubertus","full_name":"Kohler, Hubertus"},{"full_name":"Panda, Satchidananda","first_name":"Satchidananda","last_name":"Panda"},{"full_name":"Le, Yunzheng","first_name":"Yunzheng","last_name":"Le"},{"full_name":"Fehling, Hans J","first_name":"Hans","last_name":"Fehling"},{"first_name":"Dimos","last_name":"Gaidatzis","full_name":"Gaidatzis, Dimos"},{"last_name":"Stadler","first_name":"Michael","full_name":"Stadler, Michael B"},{"first_name":"Botond","last_name":"Roska","full_name":"Roska, Botond M"}],"volume":15,"date_updated":"2021-01-12T06:53:17Z","date_created":"2018-12-11T11:54:05Z","type":"journal_article","issue":"3","publist_id":"5309","abstract":[{"text":"Brain circuits are assembled from a large variety of morphologically and functionally diverse cell types. It is not known how the intermingled cell types of an individual adult brain region differ in their expressed genomes. Here we describe an atlas of cell type transcriptomes in one brain region, the mouse retina. We found that each adult cell type expressed a specific set of genes, including a unique set of transcription factors, forming a 'barcode' for cell identity. Cell type transcriptomes carried enough information to categorize cells into morphological classes and types. Several genes that were specifically expressed in particular retinal circuit elements, such as inhibitory neuron types, are associated with eye diseases. The resource described here allows gene expression to be compared across adult retinal cell types, experimenting with specific transcription factors to differentiate stem or somatic cells to retinal cell types, and predicting cellular targets of newly discovered disease-associated genes.","lang":"eng"}],"extern":1}]