[{"_id":"2160","year":"2014","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"A PAC-Bayesian bound for Lifelong Learning","publication_status":"published","status":"public","intvolume":" 32","publisher":"ML Research Press","department":[{"_id":"ChLa"}],"author":[{"full_name":"Pentina, Anastasia","first_name":"Anastasia","last_name":"Pentina","id":"42E87FC6-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Lampert, Christoph","last_name":"Lampert","first_name":"Christoph","orcid":"0000-0001-8622-7887","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87"}],"date_updated":"2023-10-17T11:54:24Z","date_created":"2018-12-11T11:56:03Z","oa_version":"Submitted Version","volume":32,"type":"conference","abstract":[{"lang":"eng","text":"Transfer learning has received a lot of attention in the machine learning community over the last years, and several effective algorithms have been developed. However, relatively little is known about their theoretical properties, especially in the setting of lifelong learning, where the goal is to transfer information to tasks for which no data have been observed so far. In this work we study lifelong learning from a theoretical perspective. Our main result is a PAC-Bayesian generalization bound that offers a unified view on existing paradigms for transfer learning, such as the transfer of parameters or the transfer of low-dimensional representations. We also use the bound to derive two principled lifelong learning algorithms, and we show that these yield results comparable with existing methods."}],"publist_id":"4844","oa":1,"citation":{"ama":"Pentina A, Lampert C. A PAC-Bayesian bound for Lifelong Learning. In: Vol 32. ML Research Press; 2014:991-999.","apa":"Pentina, A., & Lampert, C. (2014). A PAC-Bayesian bound for Lifelong Learning (Vol. 32, pp. 991–999). Presented at the ICML: International Conference on Machine Learning, Beijing, China: ML Research Press.","ieee":"A. Pentina and C. Lampert, “A PAC-Bayesian bound for Lifelong Learning,” presented at the ICML: International Conference on Machine Learning, Beijing, China, 2014, vol. 32, pp. 991–999.","ista":"Pentina A, Lampert C. 2014. A PAC-Bayesian bound for Lifelong Learning. ICML: International Conference on Machine Learning vol. 32, 991–999.","short":"A. Pentina, C. Lampert, in:, ML Research Press, 2014, pp. 991–999.","mla":"Pentina, Anastasia, and Christoph Lampert. A PAC-Bayesian Bound for Lifelong Learning. Vol. 32, ML Research Press, 2014, pp. 991–99.","chicago":"Pentina, Anastasia, and Christoph Lampert. “A PAC-Bayesian Bound for Lifelong Learning,” 32:991–99. ML Research Press, 2014."},"main_file_link":[{"url":"https://dl.acm.org/citation.cfm?id=3045003","open_access":"1"}],"quality_controlled":"1","page":"991 - 999","conference":{"end_date":"2014-06-26","location":"Beijing, China","start_date":"2014-06-21","name":"ICML: International Conference on Machine Learning"},"date_published":"2014-05-10T00:00:00Z","language":[{"iso":"eng"}],"scopus_import":"1","month":"05","day":"10","article_processing_charge":"No"},{"department":[{"_id":"CaHe"}],"publisher":"IST Austria","publication_status":"published","status":"public","title":"Forces driving epithelial spreading in zebrafish epiboly","_id":"1403","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2014","oa_version":"None","date_updated":"2023-10-17T12:16:58Z","date_created":"2018-12-11T11:51:49Z","related_material":{"record":[{"status":"public","relation":"part_of_dissertation","id":"2282"},{"relation":"part_of_dissertation","status":"public","id":"2950"},{"status":"public","relation":"part_of_dissertation","id":"3373"}]},"author":[{"full_name":"Behrndt, Martin","first_name":"Martin","last_name":"Behrndt","id":"3ECECA3A-F248-11E8-B48F-1D18A9856A87"}],"alternative_title":["IST Austria Thesis"],"type":"dissertation","publist_id":"5804","abstract":[{"text":"A variety of developmental and disease related processes depend on epithelial cell sheet spreading. In order to gain insight into the biophysical mechanism(s) underlying the tissue morphogenesis we studied the spreading of an epithelium during the early development of the zebrafish embryo. In zebrafish epiboly the enveloping cell layer (EVL), a simple squamous epithelium, spreads over the yolk cell to completely engulf it at the end of gastrulation. Previous studies have proposed that an actomyosin ring forming within the yolk syncytial layer (YSL) acts as purse string that through constriction along its circumference pulls on the margin of the EVL. Direct biophysical evidence for this hypothesis has however been missing. The aim of the thesis was to understand how the actomyosin ring may generate pulling forces onto the EVL and what cellular mechanism(s) may facilitate the spreading of the epithelium. Using laser ablation to measure cortical tension within the actomyosin ring we found an anisotropic tension distribution, which was highest along the circumference of the ring. However the low degree of anisotropy was incompatible with the actomyosin ring functioning as a purse string only. Additionally, we observed retrograde cortical flow from vegetal parts of the ring into the EVL margin. Interpreting the experimental data using a theoretical distribution that models the tissues as active viscous gels led us to proposen that the actomyosin ring has a twofold contribution to EVL epiboly. It not only acts as a purse string through constriction along its circumference, but in addition constriction along the width of the ring generates pulling forces through friction-resisted cortical flow. Moreover, when rendering the purse string mechanism unproductive EVL epiboly proceeded normally indicating that the flow-friction mechanism is sufficient to drive the process. Aiming to understand what cellular mechanism(s) may facilitate the spreading of the epithelium we found that tension-oriented EVL cell divisions limit tissue anisotropy by releasing tension along the division axis and promote epithelial spreading. Notably, EVL cells undergo ectopic cell fusion in conditions in which oriented-cell division is impaired or the epithelium is mechanically challenged. Taken together our study of EVL epiboly suggests a novel mechanism of force generation for actomyosin rings through friction-resisted cortical flow and highlights the importance of tension-oriented cell divisions in epithelial morphogenesis.","lang":"eng"}],"page":"91","citation":{"mla":"Behrndt, Martin. Forces Driving Epithelial Spreading in Zebrafish Epiboly. IST Austria, 2014.","short":"M. Behrndt, Forces Driving Epithelial Spreading in Zebrafish Epiboly, IST Austria, 2014.","chicago":"Behrndt, Martin. “Forces Driving Epithelial Spreading in Zebrafish Epiboly.” IST Austria, 2014.","ama":"Behrndt M. Forces driving epithelial spreading in zebrafish epiboly. 2014.","ista":"Behrndt M. 2014. Forces driving epithelial spreading in zebrafish epiboly. IST Austria.","ieee":"M. Behrndt, “Forces driving epithelial spreading in zebrafish epiboly,” IST Austria, 2014.","apa":"Behrndt, M. (2014). Forces driving epithelial spreading in zebrafish epiboly. IST Austria."},"language":[{"iso":"eng"}],"acknowledged_ssus":[{"_id":"SSU"}],"supervisor":[{"last_name":"Heisenberg","first_name":"Carl-Philipp J","orcid":"0000-0002-0912-4566","id":"39427864-F248-11E8-B48F-1D18A9856A87","full_name":"Heisenberg, Carl-Philipp J"}],"date_published":"2014-08-01T00:00:00Z","month":"08","day":"01"},{"month":"01","day":"01","publication_identifier":{"issn":["2366-2875"]},"article_processing_charge":"No","quality_controlled":"1","page":"65 - 72","publication":"Soziale Insekten in einer sich wandelnden Welt","citation":{"apa":"Cremer, S. (2014). Soziale Immunität: Wie sich der Staat gegen Pathogene wehrt Bayerische Akademie der Wissenschaften. In Soziale Insekten in einer sich wandelnden Welt (Vol. 43, pp. 65–72). Verlag Dr. Friedrich Pfeil.","ieee":"S. Cremer, “Soziale Immunität: Wie sich der Staat gegen Pathogene wehrt Bayerische Akademie der Wissenschaften,” in Soziale Insekten in einer sich wandelnden Welt, vol. 43, Verlag Dr. Friedrich Pfeil, 2014, pp. 65–72.","ista":"Cremer S. 2014.Soziale Immunität: Wie sich der Staat gegen Pathogene wehrt Bayerische Akademie der Wissenschaften. In: Soziale Insekten in einer sich wandelnden Welt. Rundgespräche der Kommission für Ökologie, vol. 43, 65–72.","ama":"Cremer S. Soziale Immunität: Wie sich der Staat gegen Pathogene wehrt Bayerische Akademie der Wissenschaften. In: Soziale Insekten in Einer Sich Wandelnden Welt. Vol 43. Verlag Dr. Friedrich Pfeil; 2014:65-72.","chicago":"Cremer, Sylvia. “Soziale Immunität: Wie Sich Der Staat Gegen Pathogene Wehrt Bayerische Akademie Der Wissenschaften.” In Soziale Insekten in Einer Sich Wandelnden Welt, 43:65–72. Verlag Dr. Friedrich Pfeil, 2014.","short":"S. Cremer, in:, Soziale Insekten in Einer Sich Wandelnden Welt, Verlag Dr. Friedrich Pfeil, 2014, pp. 65–72.","mla":"Cremer, Sylvia. “Soziale Immunität: Wie Sich Der Staat Gegen Pathogene Wehrt Bayerische Akademie Der Wissenschaften.” Soziale Insekten in Einer Sich Wandelnden Welt, vol. 43, Verlag Dr. Friedrich Pfeil, 2014, pp. 65–72."},"language":[{"iso":"eng"}],"date_published":"2014-01-01T00:00:00Z","alternative_title":["Rundgespräche der Kommission für Ökologie"],"type":"book_chapter","abstract":[{"lang":"ger","text":"Im Rahmen meiner Arbeit mit der kollektiven Krankheitsabwehr in Ameisengesellschaften interessiert mich vor allem, wie sich die Kolonien als Ganzes gegen Krankheiten wehren können. Warum ist dieses Thema der Krankheitsdynamik in Gruppen so wichtig? Ein Vergleich von solitär lebenden Individuen mit Individuen, die in sozialen Gruppen zusammenleben, zeigt die Kosten und die Vorteile des Gruppenlebens: Einerseits haben Individuen in sozialen Gruppen aufgrund der hohen Dichte, in der die Tiere zusammenleben, den hohen Interaktionsraten, die sie miteinander haben, und der engen Verwandtschaft, die sie verbindet, ein höheres Ansteckungsrisiko. Andererseits kann die individuelle Krankheitsabwehr durch die kollektive Abwehr in den Gruppen ergänzt werden."}],"publist_id":"5207","status":"public","title":"Soziale Immunität: Wie sich der Staat gegen Pathogene wehrt Bayerische Akademie der Wissenschaften","publication_status":"published","intvolume":" 43","department":[{"_id":"SyCr"}],"publisher":"Verlag Dr. Friedrich Pfeil","_id":"1888","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2014","date_created":"2018-12-11T11:54:33Z","date_updated":"2023-10-17T12:28:45Z","volume":43,"oa_version":"None","author":[{"id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2193-3868","first_name":"Sylvia","last_name":"Cremer","full_name":"Cremer, Sylvia"}]},{"article_processing_charge":"No","day":"01","month":"01","oa":1,"citation":{"mla":"Iglesias Ham, Mabel, et al. “Sphere Packing with Limited Overlap.” ArXiv, 1401.0468, doi:10.48550/arXiv.1401.0468.","short":"M. Iglesias Ham, M. Kerber, C. Uhler, ArXiv (n.d.).","chicago":"Iglesias Ham, Mabel, Michael Kerber, and Caroline Uhler. “Sphere Packing with Limited Overlap.” ArXiv, n.d. https://doi.org/10.48550/arXiv.1401.0468.","ama":"Iglesias Ham M, Kerber M, Uhler C. Sphere packing with limited overlap. arXiv. doi:10.48550/arXiv.1401.0468","ista":"Iglesias Ham M, Kerber M, Uhler C. Sphere packing with limited overlap. arXiv, 1401.0468.","apa":"Iglesias Ham, M., Kerber, M., & Uhler, C. (n.d.). Sphere packing with limited overlap. arXiv. https://doi.org/10.48550/arXiv.1401.0468","ieee":"M. Iglesias Ham, M. Kerber, and C. Uhler, “Sphere packing with limited overlap,” arXiv. ."},"main_file_link":[{"open_access":"1","url":"http://cccg.ca/proceedings/2014/papers/paper23.pdf"}],"external_id":{"arxiv":["1401.0468"]},"publication":"arXiv","date_published":"2014-01-01T00:00:00Z","doi":"10.48550/arXiv.1401.0468","language":[{"iso":"eng"}],"type":"preprint","article_number":"1401.0468","publist_id":"5064","abstract":[{"text":"The classical sphere packing problem asks for the best (infinite) arrangement of non-overlapping unit balls which cover as much space as possible. We define a generalized version of the problem, where we allow each ball a limited amount of overlap with other balls. We study two natural choices of overlap measures and obtain the optimal lattice packings in a parameterized family of lattices which contains the FCC, BCC, and integer lattice.","lang":"eng"}],"_id":"2012","acknowledgement":"We thank Herbert Edelsbrunner for his valuable discussions and ideas on the topic of this paper. The second author has been supported by the Max Planck Center for Visual Computing and Communication","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2014","department":[{"_id":"HeEd"},{"_id":"CaUh"}],"publication_status":"submitted","title":"Sphere packing with limited overlap","status":"public","author":[{"full_name":"Iglesias Ham, Mabel","first_name":"Mabel","last_name":"Iglesias Ham","id":"41B58C0C-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Kerber, Michael","last_name":"Kerber","first_name":"Michael","orcid":"0000-0002-8030-9299"},{"first_name":"Caroline","last_name":"Uhler","id":"49ADD78E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7008-0216","full_name":"Uhler, Caroline"}],"oa_version":"Submitted Version","date_updated":"2023-10-18T08:06:45Z","date_created":"2018-12-11T11:55:12Z"},{"language":[{"iso":"eng"}],"doi":"10.1002/ange.201405991","quality_controlled":"1","external_id":{"pmid":["25346175"]},"oa":1,"main_file_link":[{"url":"https://doi.org/10.1002/ange.201405991","open_access":"1"}],"month":"11","publication_identifier":{"issn":["1433-7851"],"eissn":["1521-3773"]},"date_updated":"2023-11-07T12:14:30Z","date_created":"2023-09-06T12:51:14Z","volume":126,"author":[{"full_name":"Stahl, Evi","first_name":"Evi","last_name":"Stahl"},{"last_name":"Martin","first_name":"Thomas","full_name":"Martin, Thomas"},{"full_name":"Praetorius, Florian M","id":"dfec9381-4341-11ee-8fd8-faa02bba7d62","last_name":"Praetorius","first_name":"Florian M"},{"last_name":"Dietz","first_name":"Hendrik","full_name":"Dietz, Hendrik"}],"publication_status":"published","publisher":"Wiley","year":"2014","pmid":1,"extern":"1","date_published":"2014-11-17T00:00:00Z","article_type":"original","page":"12949-12954","publication":"Angewandte Chemie International Edition","citation":{"chicago":"Stahl, Evi, Thomas Martin, Florian M Praetorius, and Hendrik Dietz. “Facile and Scalable Preparation of Pure and Dense DNA Origami Solutions.” Angewandte Chemie International Edition. Wiley, 2014. https://doi.org/10.1002/ange.201405991.","mla":"Stahl, Evi, et al. “Facile and Scalable Preparation of Pure and Dense DNA Origami Solutions.” Angewandte Chemie International Edition, vol. 126, no. 47, Wiley, 2014, pp. 12949–54, doi:10.1002/ange.201405991.","short":"E. Stahl, T. Martin, F.M. Praetorius, H. Dietz, Angewandte Chemie International Edition 126 (2014) 12949–12954.","ista":"Stahl E, Martin T, Praetorius FM, Dietz H. 2014. Facile and scalable preparation of pure and dense DNA origami solutions. Angewandte Chemie International Edition. 126(47), 12949–12954.","ieee":"E. Stahl, T. Martin, F. M. Praetorius, and H. Dietz, “Facile and scalable preparation of pure and dense DNA origami solutions,” Angewandte Chemie International Edition, vol. 126, no. 47. Wiley, pp. 12949–12954, 2014.","apa":"Stahl, E., Martin, T., Praetorius, F. M., & Dietz, H. (2014). Facile and scalable preparation of pure and dense DNA origami solutions. Angewandte Chemie International Edition. Wiley. https://doi.org/10.1002/ange.201405991","ama":"Stahl E, Martin T, Praetorius FM, Dietz H. Facile and scalable preparation of pure and dense DNA origami solutions. Angewandte Chemie International Edition. 2014;126(47):12949-12954. doi:10.1002/ange.201405991"},"day":"17","article_processing_charge":"No","scopus_import":"1","oa_version":"Published Version","title":"Facile and scalable preparation of pure and dense DNA origami solutions","status":"public","intvolume":" 126","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14301","abstract":[{"text":"DNA has become a prime material for assembling complex three-dimensional objects that promise utility in various areas of application. However, achieving user-defined goals with DNA objects has been hampered by the difficulty to prepare them at arbitrary concentrations and in user-defined solution conditions. Here, we describe a method that solves this problem. The method is based on poly(ethylene glycol)-induced depletion of species with high molecular weight. We demonstrate that our method is applicable to a wide spectrum of DNA shapes and that it achieves excellent recovery yields of target objects up to 97 %, while providing efficient separation from non-integrated DNA strands. DNA objects may be prepared at concentrations up to the limit of solubility, including the possibility for bringing DNA objects into a solid phase. Due to the fidelity and simplicity of our method we anticipate that it will help to catalyze the development of new types of applications that use self-assembled DNA objects.","lang":"eng"}],"issue":"47","type":"journal_article"},{"type":"journal_article","issue":"10","extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"7699","year":"2014","status":"public","title":"Harnessing vocal patterns for social communication","publication_status":"published","publisher":"Elsevier","intvolume":" 28","author":[{"orcid":"0000-0001-9242-5601","id":"56BE8254-C4F0-11E9-8E45-0B23E6697425","last_name":"Sweeney","first_name":"Lora Beatrice Jaeger","full_name":"Sweeney, Lora Beatrice Jaeger"},{"full_name":"Kelley, Darcy B","first_name":"Darcy B","last_name":"Kelley"}],"date_created":"2020-04-30T10:35:39Z","date_updated":"2024-01-31T10:14:08Z","oa_version":"None","volume":28,"month":"10","day":"01","article_processing_charge":"No","publication_identifier":{"issn":["0959-4388"]},"publication":"Current Opinion in Neurobiology","citation":{"mla":"Sweeney, Lora B., and Darcy B. Kelley. “Harnessing Vocal Patterns for Social Communication.” Current Opinion in Neurobiology, vol. 28, no. 10, Elsevier, 2014, pp. 34–41, doi:10.1016/j.conb.2014.06.006.","short":"L.B. Sweeney, D.B. Kelley, Current Opinion in Neurobiology 28 (2014) 34–41.","chicago":"Sweeney, Lora B., and Darcy B Kelley. “Harnessing Vocal Patterns for Social Communication.” Current Opinion in Neurobiology. Elsevier, 2014. https://doi.org/10.1016/j.conb.2014.06.006.","ama":"Sweeney LB, Kelley DB. Harnessing vocal patterns for social communication. Current Opinion in Neurobiology. 2014;28(10):34-41. doi:10.1016/j.conb.2014.06.006","ista":"Sweeney LB, Kelley DB. 2014. Harnessing vocal patterns for social communication. Current Opinion in Neurobiology. 28(10), 34–41.","ieee":"L. B. Sweeney and D. B. Kelley, “Harnessing vocal patterns for social communication,” Current Opinion in Neurobiology, vol. 28, no. 10. Elsevier, pp. 34–41, 2014.","apa":"Sweeney, L. B., & Kelley, D. B. (2014). Harnessing vocal patterns for social communication. Current Opinion in Neurobiology. Elsevier. https://doi.org/10.1016/j.conb.2014.06.006"},"article_type":"original","quality_controlled":"1","page":"34-41","date_published":"2014-10-01T00:00:00Z","doi":"10.1016/j.conb.2014.06.006","language":[{"iso":"eng"}]},{"month":"02","language":[{"iso":"eng"}],"doi":"10.1007/s11005-013-0667-9","quality_controlled":"1","external_id":{"arxiv":["1301.5682"]},"oa":1,"main_file_link":[{"url":"http://arxiv.org/abs/1301.5682","open_access":"1"}],"publist_id":"4653","volume":104,"date_created":"2018-12-11T11:56:44Z","date_updated":"2024-02-14T12:19:42Z","author":[{"first_name":"Yujin","last_name":"Guo","full_name":"Guo, Yujin"},{"full_name":"Seiringer, Robert","first_name":"Robert","last_name":"Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6781-0521"}],"department":[{"_id":"RoSe"}],"publisher":"Springer","publication_status":"published","year":"2014","article_processing_charge":"No","day":"01","scopus_import":"1","date_published":"2014-02-01T00:00:00Z","page":"141 - 156","article_type":"original","citation":{"ama":"Guo Y, Seiringer R. On the mass concentration for Bose-Einstein condensates with attractive interactions. Letters in Mathematical Physics. 2014;104(2):141-156. doi:10.1007/s11005-013-0667-9","ieee":"Y. Guo and R. Seiringer, “On the mass concentration for Bose-Einstein condensates with attractive interactions,” Letters in Mathematical Physics, vol. 104, no. 2. Springer, pp. 141–156, 2014.","apa":"Guo, Y., & Seiringer, R. (2014). On the mass concentration for Bose-Einstein condensates with attractive interactions. Letters in Mathematical Physics. Springer. https://doi.org/10.1007/s11005-013-0667-9","ista":"Guo Y, Seiringer R. 2014. On the mass concentration for Bose-Einstein condensates with attractive interactions. Letters in Mathematical Physics. 104(2), 141–156.","short":"Y. Guo, R. Seiringer, Letters in Mathematical Physics 104 (2014) 141–156.","mla":"Guo, Yujin, and Robert Seiringer. “On the Mass Concentration for Bose-Einstein Condensates with Attractive Interactions.” Letters in Mathematical Physics, vol. 104, no. 2, Springer, 2014, pp. 141–56, doi:10.1007/s11005-013-0667-9.","chicago":"Guo, Yujin, and Robert Seiringer. “On the Mass Concentration for Bose-Einstein Condensates with Attractive Interactions.” Letters in Mathematical Physics. Springer, 2014. https://doi.org/10.1007/s11005-013-0667-9."},"publication":"Letters in Mathematical Physics","issue":"2","abstract":[{"text":"We consider two-dimensional Bose-Einstein condensates with attractive interaction, described by the Gross-Pitaevskii functional. Minimizers of this functional exist only if the interaction strength a satisfies {Mathematical expression}, where Q is the unique positive radial solution of {Mathematical expression} in {Mathematical expression}. We present a detailed analysis of the behavior of minimizers as a approaches a*, where all the mass concentrates at a global minimum of the trapping potential.","lang":"eng"}],"type":"journal_article","oa_version":"Preprint","intvolume":" 104","title":"On the mass concentration for Bose-Einstein condensates with attractive interactions","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"2281"},{"date_published":"2014-01-02T00:00:00Z","publication":"PLoS Computational Biology","citation":{"ama":"Tkačik G, Marre O, Amodei D, Schneidman E, Bialek W, Berry M. Searching for collective behavior in a large network of sensory neurons. PLoS Computational Biology. 2014;10(1). doi:10.1371/journal.pcbi.1003408","ieee":"G. Tkačik, O. Marre, D. Amodei, E. Schneidman, W. Bialek, and M. Berry, “Searching for collective behavior in a large network of sensory neurons,” PLoS Computational Biology, vol. 10, no. 1. Public Library of Science, 2014.","apa":"Tkačik, G., Marre, O., Amodei, D., Schneidman, E., Bialek, W., & Berry, M. (2014). Searching for collective behavior in a large network of sensory neurons. PLoS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1003408","ista":"Tkačik G, Marre O, Amodei D, Schneidman E, Bialek W, Berry M. 2014. Searching for collective behavior in a large network of sensory neurons. PLoS Computational Biology. 10(1), e1003408.","short":"G. Tkačik, O. Marre, D. Amodei, E. Schneidman, W. Bialek, M. Berry, PLoS Computational Biology 10 (2014).","mla":"Tkačik, Gašper, et al. “Searching for Collective Behavior in a Large Network of Sensory Neurons.” PLoS Computational Biology, vol. 10, no. 1, e1003408, Public Library of Science, 2014, doi:10.1371/journal.pcbi.1003408.","chicago":"Tkačik, Gašper, Olivier Marre, Dario Amodei, Elad Schneidman, William Bialek, and Michael Berry. “Searching for Collective Behavior in a Large Network of Sensory Neurons.” PLoS Computational Biology. Public Library of Science, 2014. https://doi.org/10.1371/journal.pcbi.1003408."},"day":"02","has_accepted_license":"1","scopus_import":1,"pubrep_id":"436","file":[{"file_name":"IST-2016-436-v1+1_journal.pcbi.1003408.pdf","access_level":"open_access","file_size":2194790,"content_type":"application/pdf","creator":"system","relation":"main_file","file_id":"4965","date_created":"2018-12-12T10:12:46Z","date_updated":"2020-07-14T12:45:35Z","checksum":"c720222c5e924a4acb17f23b9381a6ca"}],"oa_version":"Published Version","_id":"2257","user_id":"4435EBFC-F248-11E8-B48F-1D18A9856A87","ddc":["570"],"status":"public","title":"Searching for collective behavior in a large network of sensory neurons","intvolume":" 10","abstract":[{"lang":"eng","text":"Maximum entropy models are the least structured probability distributions that exactly reproduce a chosen set of statistics measured in an interacting network. Here we use this principle to construct probabilistic models which describe the correlated spiking activity of populations of up to 120 neurons in the salamander retina as it responds to natural movies. Already in groups as small as 10 neurons, interactions between spikes can no longer be regarded as small perturbations in an otherwise independent system; for 40 or more neurons pairwise interactions need to be supplemented by a global interaction that controls the distribution of synchrony in the population. Here we show that such “K-pairwise” models—being systematic extensions of the previously used pairwise Ising models—provide an excellent account of the data. We explore the properties of the neural vocabulary by: 1) estimating its entropy, which constrains the population's capacity to represent visual information; 2) classifying activity patterns into a small set of metastable collective modes; 3) showing that the neural codeword ensembles are extremely inhomogenous; 4) demonstrating that the state of individual neurons is highly predictable from the rest of the population, allowing the capacity for error correction."}],"issue":"1","type":"journal_article","doi":"10.1371/journal.pcbi.1003408","language":[{"iso":"eng"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"main_file_link":[{"url":"http://repository.ist.ac.at/id/eprint/436","open_access":"1"}],"quality_controlled":"1","month":"01","publication_identifier":{"issn":["1553734X"]},"author":[{"orcid":"0000-0002-6699-1455","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","last_name":"Tkacik","first_name":"Gasper","full_name":"Tkacik, Gasper"},{"first_name":"Olivier","last_name":"Marre","full_name":"Marre, Olivier"},{"first_name":"Dario","last_name":"Amodei","full_name":"Amodei, Dario"},{"full_name":"Schneidman, Elad","first_name":"Elad","last_name":"Schneidman"},{"full_name":"Bialek, William","first_name":"William","last_name":"Bialek"},{"first_name":"Michael","last_name":"Berry","full_name":"Berry, Michael"}],"related_material":{"record":[{"id":"5562","status":"public","relation":"popular_science"}]},"date_updated":"2024-02-21T13:46:14Z","date_created":"2018-12-11T11:56:36Z","volume":10,"acknowledgement":"\r\n\r\n\r\n\r\nThis work was funded by NSF grant IIS-0613435, NSF grant PHY-0957573, NSF grant CCF-0939370, NIH grant R01 EY14196, NIH grant P50 GM071508, the Fannie and John Hertz Foundation, the Swartz Foundation, the WM Keck Foundation, ANR Optima and the French State program “Investissements d'Avenir” [LIFESENSES: ANR-10-LABX-65], and the Austrian Research Foundation FWF P25651.","year":"2014","publication_status":"published","publisher":"Public Library of Science","department":[{"_id":"GaTk"}],"file_date_updated":"2020-07-14T12:45:35Z","publist_id":"4689","license":"https://creativecommons.org/licenses/by/4.0/","article_number":"e1003408"},{"language":[{"iso":"eng"}],"doi":"10.1021/jo500773t","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1021/jo500773t"}],"oa":1,"publication_identifier":{"issn":["0022-3263"],"eissn":["1520-6904"]},"month":"06","volume":79,"date_created":"2024-03-21T07:58:31Z","date_updated":"2024-03-25T11:50:01Z","author":[{"full_name":"Guan, Weiye","first_name":"Weiye","last_name":"Guan"},{"full_name":"Michael, Alicia Kathleen","id":"6437c950-2a03-11ee-914d-d6476dd7b75c","first_name":"Alicia Kathleen","last_name":"Michael"},{"first_name":"Melissa L.","last_name":"McIntosh","full_name":"McIntosh, Melissa L."},{"first_name":"Liza","last_name":"Koren-Selfridge","full_name":"Koren-Selfridge, Liza"},{"first_name":"John P.","last_name":"Scott","full_name":"Scott, John P."},{"full_name":"Clark, Timothy B.","last_name":"Clark","first_name":"Timothy B."}],"publisher":"American Chemical Society","publication_status":"published","year":"2014","extern":"1","date_published":"2014-06-10T00:00:00Z","page":"7199-7204","article_type":"letter_note","citation":{"chicago":"Guan, Weiye, Alicia K. Michael, Melissa L. McIntosh, Liza Koren-Selfridge, John P. Scott, and Timothy B. Clark. “Stereoselective Formation of Trisubstituted Vinyl Boronate Esters by the Acid-Mediated Elimination of α-Hydroxyboronate Esters.” The Journal of Organic Chemistry. American Chemical Society, 2014. https://doi.org/10.1021/jo500773t.","mla":"Guan, Weiye, et al. “Stereoselective Formation of Trisubstituted Vinyl Boronate Esters by the Acid-Mediated Elimination of α-Hydroxyboronate Esters.” The Journal of Organic Chemistry, vol. 79, no. 15, American Chemical Society, 2014, pp. 7199–204, doi:10.1021/jo500773t.","short":"W. Guan, A.K. Michael, M.L. McIntosh, L. Koren-Selfridge, J.P. Scott, T.B. Clark, The Journal of Organic Chemistry 79 (2014) 7199–7204.","ista":"Guan W, Michael AK, McIntosh ML, Koren-Selfridge L, Scott JP, Clark TB. 2014. Stereoselective formation of trisubstituted vinyl boronate esters by the acid-mediated elimination of α-hydroxyboronate esters. The Journal of Organic Chemistry. 79(15), 7199–7204.","apa":"Guan, W., Michael, A. K., McIntosh, M. L., Koren-Selfridge, L., Scott, J. P., & Clark, T. B. (2014). Stereoselective formation of trisubstituted vinyl boronate esters by the acid-mediated elimination of α-hydroxyboronate esters. The Journal of Organic Chemistry. American Chemical Society. https://doi.org/10.1021/jo500773t","ieee":"W. Guan, A. K. Michael, M. L. McIntosh, L. Koren-Selfridge, J. P. Scott, and T. B. Clark, “Stereoselective formation of trisubstituted vinyl boronate esters by the acid-mediated elimination of α-hydroxyboronate esters,” The Journal of Organic Chemistry, vol. 79, no. 15. American Chemical Society, pp. 7199–7204, 2014.","ama":"Guan W, Michael AK, McIntosh ML, Koren-Selfridge L, Scott JP, Clark TB. Stereoselective formation of trisubstituted vinyl boronate esters by the acid-mediated elimination of α-hydroxyboronate esters. The Journal of Organic Chemistry. 2014;79(15):7199-7204. doi:10.1021/jo500773t"},"publication":"The Journal of Organic Chemistry","article_processing_charge":"No","day":"10","keyword":["Organic Chemistry"],"scopus_import":"1","oa_version":"Published Version","intvolume":" 79","status":"public","title":"Stereoselective formation of trisubstituted vinyl boronate esters by the acid-mediated elimination of α-hydroxyboronate esters","_id":"15161","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"15","abstract":[{"text":"The copper-catalyzed diboration of ketones followed by an acid-catalyzed elimination leads to the formation of 1,1-disubstituted and trisubstituted vinyl boronate esters with moderate to good yields and selectivity. Addition of tosic acid to the crude diboration products provides the corresponding vinyl boronate esters upon elimination. The trisubstituted vinyl boronate esters are formed as the (Z)-olefin isomer, which was established by subjecting the products to a Suzuki–Miyaura coupling reaction to obtain alkenes of known geometry.","lang":"eng"}],"type":"journal_article"},{"project":[{"grant_number":"243071","_id":"25DC711C-B435-11E9-9278-68D0E5697425","name":"Social Vaccination in Ant Colonies: from Individual Mechanisms to Society Effects","call_identifier":"FP7"}],"quality_controlled":"1","language":[{"iso":"eng"}],"doi":"10.1016/j.cois.2014.09.001","month":"11","department":[{"_id":"SyCr"}],"publisher":"Elsevier","publication_status":"published","year":"2014","volume":5,"date_updated":"2024-03-28T23:30:05Z","date_created":"2018-12-11T11:55:08Z","related_material":{"record":[{"relation":"dissertation_contains","id":"6383"},{"id":"6435","status":"public","relation":"dissertation_contains"}]},"author":[{"last_name":"Stroeymeyt","first_name":"Nathalie","full_name":"Stroeymeyt, Nathalie"},{"full_name":"Casillas Perez, Barbara E","first_name":"Barbara E","last_name":"Casillas Perez","id":"351ED2AA-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Cremer, Sylvia","first_name":"Sylvia","last_name":"Cremer","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2193-3868"}],"publist_id":"5080","ec_funded":1,"page":"1 - 15","citation":{"short":"N. Stroeymeyt, B.E. Casillas Perez, S. Cremer, Current Opinion in Insect Science 5 (2014) 1–15.","mla":"Stroeymeyt, Nathalie, et al. “Organisational Immunity in Social Insects.” Current Opinion in Insect Science, vol. 5, no. 1, Elsevier, 2014, pp. 1–15, doi:10.1016/j.cois.2014.09.001.","chicago":"Stroeymeyt, Nathalie, Barbara E Casillas Perez, and Sylvia Cremer. “Organisational Immunity in Social Insects.” Current Opinion in Insect Science. Elsevier, 2014. https://doi.org/10.1016/j.cois.2014.09.001.","ama":"Stroeymeyt N, Casillas Perez BE, Cremer S. Organisational immunity in social insects. Current Opinion in Insect Science. 2014;5(1):1-15. doi:10.1016/j.cois.2014.09.001","apa":"Stroeymeyt, N., Casillas Perez, B. E., & Cremer, S. (2014). Organisational immunity in social insects. Current Opinion in Insect Science. Elsevier. https://doi.org/10.1016/j.cois.2014.09.001","ieee":"N. Stroeymeyt, B. E. Casillas Perez, and S. Cremer, “Organisational immunity in social insects,” Current Opinion in Insect Science, vol. 5, no. 1. Elsevier, pp. 1–15, 2014.","ista":"Stroeymeyt N, Casillas Perez BE, Cremer S. 2014. Organisational immunity in social insects. Current Opinion in Insect Science. 5(1), 1–15."},"publication":"Current Opinion in Insect Science","date_published":"2014-11-01T00:00:00Z","scopus_import":1,"day":"01","intvolume":" 5","title":"Organisational immunity in social insects","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"1999","oa_version":"None","type":"journal_article","issue":"1","abstract":[{"text":"Selection for disease control is believed to have contributed to shape the organisation of insect societies — leading to interaction patterns that mitigate disease transmission risk within colonies, conferring them ‘organisational immunity’. Recent studies combining epidemiological models with social network analysis have identified general properties of interaction networks that may hinder propagation of infection within groups. These can be prophylactic and/or induced upon pathogen exposure. Here we review empirical evidence for these two types of organisational immunity in social insects and describe the individual-level behaviours that underlie it. We highlight areas requiring further investigation, and emphasise the need for tighter links between theory and empirical research and between individual-level and collective-level analyses.","lang":"eng"}]},{"date_published":"2013-12-11T00:00:00Z","article_type":"original","citation":{"chicago":"Mognetti, B. M., Anđela Šarić, S. Angioletti-Uberti, A. Cacciuto, C. Valeriani, and D. Frenkel. “Living Clusters and Crystals from Low-Density Suspensions of Active Colloids.” Physical Review Letters. American Physical Society, 2013. https://doi.org/10.1103/physrevlett.111.245702.","short":"B.M. Mognetti, A. Šarić, S. Angioletti-Uberti, A. Cacciuto, C. Valeriani, D. Frenkel, Physical Review Letters 111 (2013).","mla":"Mognetti, B. M., et al. “Living Clusters and Crystals from Low-Density Suspensions of Active Colloids.” Physical Review Letters, vol. 111, no. 24, 245702, American Physical Society, 2013, doi:10.1103/physrevlett.111.245702.","ieee":"B. M. Mognetti, A. Šarić, S. Angioletti-Uberti, A. Cacciuto, C. Valeriani, and D. Frenkel, “Living clusters and crystals from low-density suspensions of active colloids,” Physical Review Letters, vol. 111, no. 24. American Physical Society, 2013.","apa":"Mognetti, B. M., Šarić, A., Angioletti-Uberti, S., Cacciuto, A., Valeriani, C., & Frenkel, D. (2013). Living clusters and crystals from low-density suspensions of active colloids. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.111.245702","ista":"Mognetti BM, Šarić A, Angioletti-Uberti S, Cacciuto A, Valeriani C, Frenkel D. 2013. Living clusters and crystals from low-density suspensions of active colloids. Physical Review Letters. 111(24), 245702.","ama":"Mognetti BM, Šarić A, Angioletti-Uberti S, Cacciuto A, Valeriani C, Frenkel D. Living clusters and crystals from low-density suspensions of active colloids. Physical Review Letters. 2013;111(24). doi:10.1103/physrevlett.111.245702"},"publication":"Physical Review Letters","article_processing_charge":"No","day":"11","keyword":["general physics and astronomy"],"scopus_import":"1","oa_version":"Preprint","intvolume":" 111","title":"Living clusters and crystals from low-density suspensions of active colloids","status":"public","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","_id":"10384","issue":"24","abstract":[{"text":"Recent studies aimed at investigating artificial analogs of bacterial colonies have shown that low-density suspensions of self-propelled particles confined in two dimensions can assemble into finite aggregates that merge and split, but have a typical size that remains constant (living clusters). In this Letter, we address the problem of the formation of living clusters and crystals of active particles in three dimensions. We study two systems: self-propelled particles interacting via a generic attractive potential and colloids that can move toward each other as a result of active agents (e.g., by molecular motors). In both cases, fluidlike “living” clusters form. We explain this general feature in terms of the balance between active forces and regression to thermodynamic equilibrium. This balance can be quantified in terms of a dimensionless number that allows us to collapse the observed clustering behavior onto a universal curve. We also discuss how active motion affects the kinetics of crystal formation.","lang":"eng"}],"type":"journal_article","language":[{"iso":"eng"}],"doi":"10.1103/physrevlett.111.245702","quality_controlled":"1","oa":1,"main_file_link":[{"url":"https://arxiv.org/abs/1311.4681","open_access":"1"}],"external_id":{"pmid":["24483677"],"arxiv":["1311.4681"]},"publication_identifier":{"eissn":["1079-7114"],"issn":["0031-9007"]},"month":"12","volume":111,"date_created":"2021-11-29T13:29:31Z","date_updated":"2021-11-29T14:05:19Z","author":[{"full_name":"Mognetti, B. M.","last_name":"Mognetti","first_name":"B. M."},{"full_name":"Šarić, Anđela","orcid":"0000-0002-7854-2139","id":"bf63d406-f056-11eb-b41d-f263a6566d8b","last_name":"Šarić","first_name":"Anđela"},{"last_name":"Angioletti-Uberti","first_name":"S.","full_name":"Angioletti-Uberti, S."},{"first_name":"A.","last_name":"Cacciuto","full_name":"Cacciuto, A."},{"last_name":"Valeriani","first_name":"C.","full_name":"Valeriani, C."},{"full_name":"Frenkel, D.","first_name":"D.","last_name":"Frenkel"}],"publisher":"American Physical Society","publication_status":"published","pmid":1,"year":"2013","acknowledgement":"This work was supported by the ERC Advanced Grant 227758, the National Science Foundation under Career Grant No. DMR-0846426, the Wolfson Merit Award 2007/R3 of the Royal Society of London and the EPSRC Programme Grant EP/I001352/1. BMM acknowledge T. Curk and A. Ballard for useful discussions. C. V. acknowledges financial support from a Juan de la Cierva Fellowship, from the Marie Curie Integration Grant PCIG-GA-2011-303941 ANISOKINEQ, and from the National Project FIS2010- 16159. S. A-U acknowledges support from the Alexander von Humboldt Foundation.","extern":"1","article_number":"245702"},{"year":"2013","acknowledgement":"This work was supported by the National Science Foundation under Career Grant No. DMR 0846426. The authors thank J. C. Pàmies for many fruitful discussions on the subject.","publisher":"Royal Society of Chemistry","publication_status":"published","author":[{"full_name":"Šarić, Anđela","orcid":"0000-0002-7854-2139","id":"bf63d406-f056-11eb-b41d-f263a6566d8b","last_name":"Šarić","first_name":"Anđela"},{"full_name":"Cacciuto, Angelo","first_name":"Angelo","last_name":"Cacciuto"}],"volume":9,"date_updated":"2021-11-29T14:29:31Z","date_created":"2021-11-29T14:06:32Z","article_number":"6677","extern":"1","main_file_link":[{"url":"https://pubs.rsc.org/en/content/articlehtml/2013/sm/c3sm50188d"}],"quality_controlled":"1","doi":"10.1039/c3sm50188d","language":[{"iso":"eng"}],"publication_identifier":{"issn":["1744-683X"],"eissn":["1744-6848"]},"month":"05","_id":"10386","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","intvolume":" 9","status":"public","title":"Self-assembly of nanoparticles adsorbed on fluid and elastic membranes","oa_version":"None","type":"journal_article","issue":"29","abstract":[{"text":"In this paper we review recent numerical and theoretical developments of particle self-assembly on fluid and elastic membranes and compare them to available experimental realizations. We discuss the problem and its applications in biology and materials science, and give an overview of numerical models and strategies to study these systems across all length-scales. As this is a very broad field, this review focuses exclusively on surface-driven aggregation of nanoparticles that are at least one order of magnitude larger than the surface thickness and are adsorbed onto it. In this regime, all chemical details of the surface can be ignored in favor of a coarse-grained representation, and the collective behavior of many particles can be monitored and analyzed. We review the existing literature on how the mechanical properties and the geometry of the surface affect the structure of the particle aggregates and how these can drive shape deformation on the surface.","lang":"eng"}],"citation":{"chicago":"Šarić, Anđela, and Angelo Cacciuto. “Self-Assembly of Nanoparticles Adsorbed on Fluid and Elastic Membranes.” Soft Matter. Royal Society of Chemistry, 2013. https://doi.org/10.1039/c3sm50188d.","mla":"Šarić, Anđela, and Angelo Cacciuto. “Self-Assembly of Nanoparticles Adsorbed on Fluid and Elastic Membranes.” Soft Matter, vol. 9, no. 29, 6677, Royal Society of Chemistry, 2013, doi:10.1039/c3sm50188d.","short":"A. Šarić, A. Cacciuto, Soft Matter 9 (2013).","ista":"Šarić A, Cacciuto A. 2013. Self-assembly of nanoparticles adsorbed on fluid and elastic membranes. Soft Matter. 9(29), 6677.","apa":"Šarić, A., & Cacciuto, A. (2013). Self-assembly of nanoparticles adsorbed on fluid and elastic membranes. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/c3sm50188d","ieee":"A. Šarić and A. Cacciuto, “Self-assembly of nanoparticles adsorbed on fluid and elastic membranes,” Soft Matter, vol. 9, no. 29. Royal Society of Chemistry, 2013.","ama":"Šarić A, Cacciuto A. Self-assembly of nanoparticles adsorbed on fluid and elastic membranes. Soft Matter. 2013;9(29). doi:10.1039/c3sm50188d"},"publication":"Soft Matter","article_type":"original","date_published":"2013-05-03T00:00:00Z","scopus_import":"1","keyword":["condensed matter physics","general chemistry"],"article_processing_charge":"No","day":"03"},{"publication_identifier":{"issn":["1744-683X"],"eissn":["1744-6848"]},"month":"08","language":[{"iso":"eng"}],"doi":"10.1039/c3sm51495a","quality_controlled":"1","extern":"1","volume":9,"date_updated":"2021-11-29T14:05:23Z","date_created":"2021-11-29T13:31:24Z","author":[{"last_name":"Napoli","first_name":"Joseph A.","full_name":"Napoli, Joseph A."},{"full_name":"Šarić, Anđela","orcid":"0000-0002-7854-2139","id":"bf63d406-f056-11eb-b41d-f263a6566d8b","last_name":"Šarić","first_name":"Anđela"},{"full_name":"Cacciuto, Angelo","first_name":"Angelo","last_name":"Cacciuto"}],"publisher":"Royal Society of Chemistry","publication_status":"published","acknowledgement":"This work was supported by the National Science Foundation under Career Grant no. DMR-0846426.","year":"2013","article_processing_charge":"No","day":"08","keyword":["condensed matter physics","general chemistry"],"scopus_import":"1","date_published":"2013-08-08T00:00:00Z","page":"8881-8886","article_type":"original","citation":{"short":"J.A. Napoli, A. Šarić, A. Cacciuto, Soft Matter 9 (2013) 8881–8886.","mla":"Napoli, Joseph A., et al. “Collapsing Nanoparticle-Laden Nanotubes.” Soft Matter, vol. 9, no. 37, Royal Society of Chemistry, 2013, pp. 8881–86, doi:10.1039/c3sm51495a.","chicago":"Napoli, Joseph A., Anđela Šarić, and Angelo Cacciuto. “Collapsing Nanoparticle-Laden Nanotubes.” Soft Matter. Royal Society of Chemistry, 2013. https://doi.org/10.1039/c3sm51495a.","ama":"Napoli JA, Šarić A, Cacciuto A. Collapsing nanoparticle-laden nanotubes. Soft Matter. 2013;9(37):8881-8886. doi:10.1039/c3sm51495a","apa":"Napoli, J. A., Šarić, A., & Cacciuto, A. (2013). Collapsing nanoparticle-laden nanotubes. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/c3sm51495a","ieee":"J. A. Napoli, A. Šarić, and A. Cacciuto, “Collapsing nanoparticle-laden nanotubes,” Soft Matter, vol. 9, no. 37. Royal Society of Chemistry, pp. 8881–8886, 2013.","ista":"Napoli JA, Šarić A, Cacciuto A. 2013. Collapsing nanoparticle-laden nanotubes. Soft Matter. 9(37), 8881–8886."},"publication":"Soft Matter","issue":"37","abstract":[{"lang":"eng","text":"We show how self-assembly of sticky nanoparticles can drive radial collapse of thin-walled nanotubes. Using numerical simulations, we study the transition as a function of the geometric and elastic parameters of the nanotube and the binding strength of the nanoparticles. We find that it is possible to derive a simple scaling law relating all these parameters, and estimate bounds for the onset conditions leading to the collapse of the nanotube. We also study the reverse process – the nanoparticle release from the folded state – and find that the stability of the collapsed state can be greatly improved by increasing the bending rigidity of the nanotubes. Our results suggest ways to strengthen the mechanical properties of nanotubes, but also indicate that the control of nanoparticle self-assembly on these nanotubes can lead to nanoparticle-laden responsive materials."}],"type":"journal_article","oa_version":"None","intvolume":" 9","title":"Collapsing nanoparticle-laden nanotubes","status":"public","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","_id":"10385"},{"date_updated":"2021-12-02T12:51:12Z","date_created":"2021-12-01T14:35:35Z","volume":58,"author":[{"first_name":"Alois","last_name":"Schlögl","id":"45BF87EE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5621-8100","full_name":"Schlögl, Alois"},{"first_name":"Peter M","last_name":"Jonas","id":"353C1B58-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5001-4804","full_name":"Jonas, Peter M"},{"full_name":"Schmidt-Hieber, C.","last_name":"Schmidt-Hieber","first_name":"C."},{"first_name":"S. J.","last_name":"Guzman","full_name":"Guzman, S. J."}],"publication_status":"published","department":[{"_id":"PeJo"}],"publisher":"De Gruyter","year":"2013","pmid":1,"file_date_updated":"2021-12-01T14:38:08Z","article_number":"000010151520134181","language":[{"iso":"eng"}],"conference":{"name":"BMT: Biomedizinische Technik ","location":"Graz, Austria","start_date":"2013-09-19","end_date":"2013-09-21"},"doi":"10.1515/bmt-2013-4181","quality_controlled":"1","external_id":{"pmid":["24042795"]},"oa":1,"month":"08","publication_identifier":{"eissn":["1862-278X"],"issn":["0013-5585"]},"oa_version":"Submitted Version","file":[{"creator":"schloegl","file_size":149825,"content_type":"application/pdf","access_level":"open_access","file_name":"Schloegl_Abstract-BMT2013.pdf","success":1,"checksum":"cdfc5339b530a25d6079f7223f0b1f16","date_created":"2021-12-01T14:38:08Z","date_updated":"2021-12-01T14:38:08Z","file_id":"10397","relation":"main_file"}],"status":"public","title":"Stimfit: A fast visualization and analysis environment for cellular neurophysiology","ddc":["005","610"],"intvolume":" 58","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","_id":"10396","abstract":[{"lang":"eng","text":"Stimfit is a free cross-platform software package for viewing and analyzing electrophysiological data. It supports most standard file types for cellular neurophysiology and other biomedical formats. Its analysis algorithms have been used and validated in several experimental laboratories. Its embedded Python scripting interface makes Stimfit highly extensible and customizable."}],"issue":"SI-1-Track-G","type":"journal_article","date_published":"2013-08-01T00:00:00Z","article_type":"original","publication":"Biomedical Engineering / Biomedizinische Technik","citation":{"ama":"Schlögl A, Jonas PM, Schmidt-Hieber C, Guzman SJ. Stimfit: A fast visualization and analysis environment for cellular neurophysiology. Biomedical Engineering / Biomedizinische Technik. 2013;58(SI-1-Track-G). doi:10.1515/bmt-2013-4181","apa":"Schlögl, A., Jonas, P. M., Schmidt-Hieber, C., & Guzman, S. J. (2013). Stimfit: A fast visualization and analysis environment for cellular neurophysiology. Biomedical Engineering / Biomedizinische Technik. Graz, Austria: De Gruyter. https://doi.org/10.1515/bmt-2013-4181","ieee":"A. Schlögl, P. M. Jonas, C. Schmidt-Hieber, and S. J. Guzman, “Stimfit: A fast visualization and analysis environment for cellular neurophysiology,” Biomedical Engineering / Biomedizinische Technik, vol. 58, no. SI-1-Track-G. De Gruyter, 2013.","ista":"Schlögl A, Jonas PM, Schmidt-Hieber C, Guzman SJ. 2013. Stimfit: A fast visualization and analysis environment for cellular neurophysiology. Biomedical Engineering / Biomedizinische Technik. 58(SI-1-Track-G), 000010151520134181.","short":"A. Schlögl, P.M. Jonas, C. Schmidt-Hieber, S.J. Guzman, Biomedical Engineering / Biomedizinische Technik 58 (2013).","mla":"Schlögl, Alois, et al. “Stimfit: A Fast Visualization and Analysis Environment for Cellular Neurophysiology.” Biomedical Engineering / Biomedizinische Technik, vol. 58, no. SI-1-Track-G, 000010151520134181, De Gruyter, 2013, doi:10.1515/bmt-2013-4181.","chicago":"Schlögl, Alois, Peter M Jonas, C. Schmidt-Hieber, and S. J. Guzman. “Stimfit: A Fast Visualization and Analysis Environment for Cellular Neurophysiology.” Biomedical Engineering / Biomedizinische Technik. De Gruyter, 2013. https://doi.org/10.1515/bmt-2013-4181."},"day":"01","has_accepted_license":"1","article_processing_charge":"No","keyword":["biomedical engineering","data analysis","free software"]},{"author":[{"full_name":"Polshyn, Hryhoriy","id":"edfc7cb1-526e-11ec-b05a-e6ecc27e4e48","orcid":"0000-0001-8223-8896","first_name":"Hryhoriy","last_name":"Polshyn"},{"first_name":"Raffi","last_name":"Budakian","full_name":"Budakian, Raffi"},{"full_name":"Gu, Genda","first_name":"Genda","last_name":"Gu"}],"volume":58,"date_updated":"2022-02-08T10:48:06Z","date_created":"2022-02-08T10:34:29Z","year":"2013","acknowledgement":"This work was supported by the Center for Emergent Superconductivity, an Energy Frontier Research Center funded by the US DOE, Office of Science.","publisher":"American Physical Society","publication_status":"published","extern":"1","article_number":"N36.00001","conference":{"name":"APS: American Physical Society","end_date":"2013-03-22","start_date":"2013-03-18","location":"Baltimore, MD, United States"},"language":[{"iso":"eng"}],"main_file_link":[{"url":"https://meetings.aps.org/Meeting/MAR13/Event/186873","open_access":"1"}],"oa":1,"quality_controlled":"1","publication_identifier":{"issn":["0003-0503"]},"month":"03","oa_version":"Published Version","_id":"10749","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","intvolume":" 58","title":"Cantilever micro-susceptometry of mesoscopic Bi2212 samples","status":"public","issue":"1","abstract":[{"text":"Fluxoid quantization provides a direct means to study phase coherence. In cuprate superconductors, there have been observations which suggest that phase coherent superconducting fluctuations may persist at temperatures significantly above Tc. The focus of this work is to study the vortex states in mesoscopic cuprate superconducting samples to directly probe phase coherence over a wide range of temperatures. We present cantilever torque susceptometry measurements of micron and sub-micron size Bi2212 rings and disks. The high sensitivity of this technique allowed observation of transitions between different fluxoid states of a single ring, and the discrete vortex states of micron size disks. The dependence of magnetic susceptibility on diameter and wall thickness of the ring was investigated. Measurements were made at different values of the in-plane magnetic field, and over a wide range of temperatures.","lang":"eng"}],"type":"conference","alternative_title":["Bulletin of the American Physical Society"],"date_published":"2013-03-01T00:00:00Z","citation":{"short":"H. Polshyn, R. Budakian, G. Gu, in:, APS March Meeting 2013, American Physical Society, 2013.","mla":"Polshyn, Hryhoriy, et al. “Cantilever Micro-Susceptometry of Mesoscopic Bi2212 Samples.” APS March Meeting 2013, vol. 58, no. 1, N36.00001, American Physical Society, 2013.","chicago":"Polshyn, Hryhoriy, Raffi Budakian, and Genda Gu. “Cantilever Micro-Susceptometry of Mesoscopic Bi2212 Samples.” In APS March Meeting 2013, Vol. 58. American Physical Society, 2013.","ama":"Polshyn H, Budakian R, Gu G. Cantilever micro-susceptometry of mesoscopic Bi2212 samples. In: APS March Meeting 2013. Vol 58. American Physical Society; 2013.","apa":"Polshyn, H., Budakian, R., & Gu, G. (2013). Cantilever micro-susceptometry of mesoscopic Bi2212 samples. In APS March Meeting 2013 (Vol. 58). Baltimore, MD, United States: American Physical Society.","ieee":"H. Polshyn, R. Budakian, and G. Gu, “Cantilever micro-susceptometry of mesoscopic Bi2212 samples,” in APS March Meeting 2013, Baltimore, MD, United States, 2013, vol. 58, no. 1.","ista":"Polshyn H, Budakian R, Gu G. 2013. Cantilever micro-susceptometry of mesoscopic Bi2212 samples. APS March Meeting 2013. APS: American Physical Society, Bulletin of the American Physical Society, vol. 58, N36.00001."},"publication":"APS March Meeting 2013","article_processing_charge":"No","day":"01"},{"article_processing_charge":"No","has_accepted_license":"1","day":"21","keyword":["Plant Science","Ecology","Ecology","Evolution","Behavior and Systematics"],"scopus_import":"1","date_published":"2013-10-21T00:00:00Z","page":"650-675","article_type":"original","citation":{"ista":"Vanneste S, Friml J. 2013. Calcium: The missing link in auxin action. Plants. 2(4), 650–675.","apa":"Vanneste, S., & Friml, J. (2013). Calcium: The missing link in auxin action. Plants. MDPI. https://doi.org/10.3390/plants2040650","ieee":"S. Vanneste and J. Friml, “Calcium: The missing link in auxin action,” Plants, vol. 2, no. 4. MDPI, pp. 650–675, 2013.","ama":"Vanneste S, Friml J. Calcium: The missing link in auxin action. Plants. 2013;2(4):650-675. doi:10.3390/plants2040650","chicago":"Vanneste, Steffen, and Jiří Friml. “Calcium: The Missing Link in Auxin Action.” Plants. MDPI, 2013. https://doi.org/10.3390/plants2040650.","mla":"Vanneste, Steffen, and Jiří Friml. “Calcium: The Missing Link in Auxin Action.” Plants, vol. 2, no. 4, MDPI, 2013, pp. 650–75, doi:10.3390/plants2040650.","short":"S. Vanneste, J. Friml, Plants 2 (2013) 650–675."},"publication":"Plants","issue":"4","abstract":[{"text":"Due to their sessile lifestyles, plants need to deal with the limitations and stresses imposed by the changing environment. Plants cope with these by a remarkable developmental flexibility, which is embedded in their strategy to survive. Plants can adjust their size, shape and number of organs, bend according to gravity and light, and regenerate tissues that were damaged, utilizing a coordinating, intercellular signal, the plant hormone, auxin. Another versatile signal is the cation, Ca2+, which is a crucial second messenger for many rapid cellular processes during responses to a wide range of endogenous and environmental signals, such as hormones, light, drought stress and others. Auxin is a good candidate for one of these Ca2+-activating signals. However, the role of auxin-induced Ca2+ signaling is poorly understood. Here, we will provide an overview of possible developmental and physiological roles, as well as mechanisms underlying the interconnection of Ca2+ and auxin signaling. ","lang":"eng"}],"type":"journal_article","file":[{"checksum":"fb4ff2e820e344e253c9197544610be6","success":1,"date_created":"2022-03-21T12:12:56Z","date_updated":"2022-03-21T12:12:56Z","relation":"main_file","file_id":"10916","file_size":670188,"content_type":"application/pdf","creator":"dernst","access_level":"open_access","file_name":"2013_Plants_Vanneste.pdf"}],"oa_version":"Published Version","intvolume":" 2","title":"Calcium: The missing link in auxin action","status":"public","ddc":["580"],"_id":"10895","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"issn":["2223-7747"]},"month":"10","language":[{"iso":"eng"}],"doi":"10.3390/plants2040650","quality_controlled":"1","external_id":{"pmid":["27137397"]},"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/3.0/legalcode","name":"Creative Commons Attribution 3.0 Unported (CC BY 3.0)","short":"CC BY (3.0)","image":"/images/cc_by.png"},"oa":1,"license":"https://creativecommons.org/licenses/by/3.0/","file_date_updated":"2022-03-21T12:12:56Z","volume":2,"date_updated":"2022-03-21T12:15:29Z","date_created":"2022-03-21T07:13:49Z","author":[{"first_name":"Steffen","last_name":"Vanneste","full_name":"Vanneste, Steffen"},{"full_name":"Friml, Jiří","orcid":"0000-0002-8302-7596","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","first_name":"Jiří"}],"publisher":"MDPI","department":[{"_id":"JiFr"}],"publication_status":"published","pmid":1,"year":"2013"},{"issue":"5","abstract":[{"lang":"eng","text":"A prominent remedy to multicore scalability issues in concurrent data structure implementations is to relax the sequential specification of the data structure. We present distributed queues (DQ), a new family of relaxed concurrent queue implementations. DQs implement relaxed queues with linearizable emptiness check and either configurable or bounded out-of-order behavior or pool behavior. Our experiments show that DQs outperform and outscale in micro- and macrobenchmarks all strict and relaxed queue as well as pool implementations that we considered."}],"type":"conference","article_number":"17","oa_version":"None","date_updated":"2022-06-21T08:01:19Z","date_created":"2022-03-21T07:33:22Z","author":[{"first_name":"Andreas","last_name":"Haas","full_name":"Haas, Andreas"},{"last_name":"Lippautz","first_name":"Michael","full_name":"Lippautz, Michael"},{"id":"40876CD8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2985-7724","first_name":"Thomas A","last_name":"Henzinger","full_name":"Henzinger, Thomas A"},{"full_name":"Payer, Hannes","first_name":"Hannes","last_name":"Payer"},{"first_name":"Ana","last_name":"Sokolova","full_name":"Sokolova, Ana"},{"full_name":"Kirsch, Christoph M.","first_name":"Christoph M.","last_name":"Kirsch"},{"full_name":"Sezgin, Ali","last_name":"Sezgin","first_name":"Ali","id":"4C7638DA-F248-11E8-B48F-1D18A9856A87"}],"department":[{"_id":"ToHe"}],"publisher":"ACM Press","title":"Distributed queues in shared memory: Multicore performance and scalability through quantitative relaxation","status":"public","publication_status":"published","year":"2013","_id":"10898","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"isbn":["978-145032053-5"]},"article_processing_charge":"No","month":"05","day":"01","scopus_import":"1","language":[{"iso":"eng"}],"date_published":"2013-05-01T00:00:00Z","doi":"10.1145/2482767.2482789","conference":{"end_date":"2013-05-16","location":"Ischia, Italy","start_date":"2013-05-14","name":"CF: Conference on Computing Frontiers"},"quality_controlled":"1","citation":{"short":"A. Haas, M. Lippautz, T.A. Henzinger, H. Payer, A. Sokolova, C.M. Kirsch, A. Sezgin, in:, Proceedings of the ACM International Conference on Computing Frontiers - CF ’13, ACM Press, 2013.","mla":"Haas, Andreas, et al. “Distributed Queues in Shared Memory: Multicore Performance and Scalability through Quantitative Relaxation.” Proceedings of the ACM International Conference on Computing Frontiers - CF ’13, no. 5, 17, ACM Press, 2013, doi:10.1145/2482767.2482789.","chicago":"Haas, Andreas, Michael Lippautz, Thomas A Henzinger, Hannes Payer, Ana Sokolova, Christoph M. Kirsch, and Ali Sezgin. “Distributed Queues in Shared Memory: Multicore Performance and Scalability through Quantitative Relaxation.” In Proceedings of the ACM International Conference on Computing Frontiers - CF ’13. ACM Press, 2013. https://doi.org/10.1145/2482767.2482789.","ama":"Haas A, Lippautz M, Henzinger TA, et al. Distributed queues in shared memory: Multicore performance and scalability through quantitative relaxation. In: Proceedings of the ACM International Conference on Computing Frontiers - CF ’13. ACM Press; 2013. doi:10.1145/2482767.2482789","ieee":"A. Haas et al., “Distributed queues in shared memory: Multicore performance and scalability through quantitative relaxation,” in Proceedings of the ACM International Conference on Computing Frontiers - CF ’13, Ischia, Italy, 2013, no. 5.","apa":"Haas, A., Lippautz, M., Henzinger, T. A., Payer, H., Sokolova, A., Kirsch, C. M., & Sezgin, A. (2013). Distributed queues in shared memory: Multicore performance and scalability through quantitative relaxation. In Proceedings of the ACM International Conference on Computing Frontiers - CF ’13. Ischia, Italy: ACM Press. https://doi.org/10.1145/2482767.2482789","ista":"Haas A, Lippautz M, Henzinger TA, Payer H, Sokolova A, Kirsch CM, Sezgin A. 2013. Distributed queues in shared memory: Multicore performance and scalability through quantitative relaxation. Proceedings of the ACM International Conference on Computing Frontiers - CF ’13. CF: Conference on Computing Frontiers, 17."},"publication":"Proceedings of the ACM International Conference on Computing Frontiers - CF '13"},{"publisher":"Elsevier","department":[{"_id":"NiBa"}],"title":"Differentiation","status":"public","publication_status":"published","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"10899","year":"2013","oa_version":"None","date_created":"2022-03-21T07:46:22Z","date_updated":"2022-06-20T09:18:06Z","edition":"2","author":[{"full_name":"Barton, Nicholas H","orcid":"0000-0002-8548-5240","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","last_name":"Barton","first_name":"Nicholas H"}],"type":"book_chapter","page":"508-515","quality_controlled":"1","citation":{"chicago":"Barton, Nicholas H. “Differentiation.” In Encyclopedia of Biodiversity, 2nd ed., 508–15. Elsevier, 2013. https://doi.org/10.1016/b978-0-12-384719-5.00031-9.","mla":"Barton, Nicholas H. “Differentiation.” Encyclopedia of Biodiversity, 2nd ed., Elsevier, 2013, pp. 508–15, doi:10.1016/b978-0-12-384719-5.00031-9.","short":"N.H. Barton, in:, Encyclopedia of Biodiversity, 2nd ed., Elsevier, 2013, pp. 508–515.","ista":"Barton NH. 2013.Differentiation. In: Encyclopedia of Biodiversity. , 508–515.","apa":"Barton, N. H. (2013). Differentiation. In Encyclopedia of Biodiversity (2nd ed., pp. 508–515). Elsevier. https://doi.org/10.1016/b978-0-12-384719-5.00031-9","ieee":"N. H. Barton, “Differentiation,” in Encyclopedia of Biodiversity, 2nd ed., Elsevier, 2013, pp. 508–515.","ama":"Barton NH. Differentiation. In: Encyclopedia of Biodiversity. 2nd ed. Elsevier; 2013:508-515. doi:10.1016/b978-0-12-384719-5.00031-9"},"publication":"Encyclopedia of Biodiversity","language":[{"iso":"eng"}],"doi":"10.1016/b978-0-12-384719-5.00031-9","date_published":"2013-01-01T00:00:00Z","keyword":["Adaptive landscape","Cline","Coalescent process","Gene flow","Hybrid zone","Local adaptation","Natural selection","Neutral theory","Population structure","Speciation"],"scopus_import":"1","publication_identifier":{"isbn":["978-0-12-384720-1"]},"article_processing_charge":"No","day":"01","month":"01"},{"abstract":[{"text":"Faithful execution of developmental gene expression programs occurs at multiple levels and involves many different components such as transcription factors, histone-modification enzymes, and mRNA processing proteins. Recent evidence suggests that nucleoporins, well known components that control nucleo-cytoplasmic trafficking, have wide-ranging functions in developmental gene regulation that potentially extend beyond their role in nuclear transport. Whether the unexpected role of nuclear pore proteins in transcription regulation, which initially has been described in fungi and flies, also applies to human cells is unknown. Here we show at a genome-wide level that the nuclear pore protein NUP98 associates with developmentally regulated genes active during human embryonic stem cell differentiation. Overexpression of a dominant negative fragment of NUP98 levels decreases expression levels of NUP98-bound genes. In addition, we identify two modes of developmental gene regulation by NUP98 that are differentiated by the spatial localization of NUP98 target genes. Genes in the initial stage of developmental induction can associate with NUP98 that is embedded in the nuclear pores at the nuclear periphery. Alternatively, genes that are highly induced can interact with NUP98 in the nuclear interior, away from the nuclear pores. This work demonstrates for the first time that NUP98 dynamically associates with the human genome during differentiation, revealing a role of a nuclear pore protein in regulating developmental gene expression programs.","lang":"eng"}],"issue":"2","type":"journal_article","oa_version":"Published Version","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","_id":"11086","status":"public","title":"Dynamic association of NUP98 with the human genome","intvolume":" 9","day":"28","article_processing_charge":"No","scopus_import":"1","keyword":["Cancer Research","Genetics (clinical)","Genetics","Molecular Biology","Ecology","Evolution","Behavior and Systematics"],"date_published":"2013-02-28T00:00:00Z","publication":"PLoS Genetics","citation":{"mla":"Liang, Yun, et al. “Dynamic Association of NUP98 with the Human Genome.” PLoS Genetics, vol. 9, no. 2, e1003308, Public Library of Science, 2013, doi:10.1371/journal.pgen.1003308.","short":"Y. Liang, T.M. Franks, M.C. Marchetto, F.H. Gage, M. Hetzer, PLoS Genetics 9 (2013).","chicago":"Liang, Yun, Tobias M. Franks, Maria C. Marchetto, Fred H. Gage, and Martin Hetzer. “Dynamic Association of NUP98 with the Human Genome.” PLoS Genetics. Public Library of Science, 2013. https://doi.org/10.1371/journal.pgen.1003308.","ama":"Liang Y, Franks TM, Marchetto MC, Gage FH, Hetzer M. Dynamic association of NUP98 with the human genome. PLoS Genetics. 2013;9(2). doi:10.1371/journal.pgen.1003308","ista":"Liang Y, Franks TM, Marchetto MC, Gage FH, Hetzer M. 2013. Dynamic association of NUP98 with the human genome. PLoS Genetics. 9(2), e1003308.","apa":"Liang, Y., Franks, T. M., Marchetto, M. C., Gage, F. H., & Hetzer, M. (2013). Dynamic association of NUP98 with the human genome. PLoS Genetics. Public Library of Science. https://doi.org/10.1371/journal.pgen.1003308","ieee":"Y. Liang, T. M. Franks, M. C. Marchetto, F. H. Gage, and M. Hetzer, “Dynamic association of NUP98 with the human genome,” PLoS Genetics, vol. 9, no. 2. Public Library of Science, 2013."},"article_type":"original","extern":"1","article_number":"e1003308","author":[{"full_name":"Liang, Yun","first_name":"Yun","last_name":"Liang"},{"first_name":"Tobias M.","last_name":"Franks","full_name":"Franks, Tobias M."},{"full_name":"Marchetto, Maria C.","first_name":"Maria C.","last_name":"Marchetto"},{"last_name":"Gage","first_name":"Fred H.","full_name":"Gage, Fred H."},{"full_name":"HETZER, Martin W","first_name":"Martin W","last_name":"HETZER","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X"}],"date_updated":"2022-07-18T08:45:58Z","date_created":"2022-04-07T07:50:59Z","volume":9,"year":"2013","pmid":1,"publication_status":"published","publisher":"Public Library of Science","month":"02","publication_identifier":{"issn":["1553-7404"]},"doi":"10.1371/journal.pgen.1003308","language":[{"iso":"eng"}],"oa":1,"main_file_link":[{"url":"https://doi.org/10.1371/journal.pgen.1003308","open_access":"1"}],"external_id":{"pmid":["23468646"]},"quality_controlled":"1"},{"author":[{"first_name":"Brandon H.","last_name":"Toyama","full_name":"Toyama, Brandon H."},{"first_name":"Jeffrey N.","last_name":"Savas","full_name":"Savas, Jeffrey N."},{"full_name":"Park, Sung Kyu","first_name":"Sung Kyu","last_name":"Park"},{"first_name":"Michael S.","last_name":"Harris","full_name":"Harris, Michael S."},{"full_name":"Ingolia, Nicholas T.","first_name":"Nicholas T.","last_name":"Ingolia"},{"full_name":"Yates, John R.","last_name":"Yates","first_name":"John R."},{"first_name":"Martin W","last_name":"HETZER","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X","full_name":"HETZER, Martin W"}],"date_created":"2022-04-07T07:51:08Z","date_updated":"2022-07-18T08:50:47Z","volume":154,"year":"2013","pmid":1,"publication_status":"published","publisher":"Elsevier","extern":"1","doi":"10.1016/j.cell.2013.07.037","language":[{"iso":"eng"}],"external_id":{"pmid":["23993091"]},"oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.cell.2013.07.037"}],"quality_controlled":"1","month":"08","publication_identifier":{"issn":["0092-8674"]},"oa_version":"Published Version","_id":"11087","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","title":"Identification of long-lived proteins reveals exceptional stability of essential cellular structures","status":"public","intvolume":" 154","abstract":[{"lang":"eng","text":"Intracellular proteins with long lifespans have recently been linked to age-dependent defects, ranging from decreased fertility to the functional decline of neurons. Why long-lived proteins exist in metabolically active cellular environments and how they are maintained over time remains poorly understood. Here, we provide a system-wide identification of proteins with exceptional lifespans in the rat brain. These proteins are inefficiently replenished despite being translated robustly throughout adulthood. Using nucleoporins as a paradigm for long-term protein persistence, we found that nuclear pore complexes (NPCs) are maintained over a cell’s life through slow but finite exchange of even its most stable subcomplexes. This maintenance is limited, however, as some nucleoporin levels decrease during aging, providing a rationale for the previously observed age-dependent deterioration of NPC function. Our identification of a long-lived proteome reveals cellular components that are at increased risk for damage accumulation, linking long-term protein persistence to the cellular aging process."}],"issue":"5","type":"journal_article","date_published":"2013-08-29T00:00:00Z","publication":"Cell","citation":{"ama":"Toyama BH, Savas JN, Park SK, et al. Identification of long-lived proteins reveals exceptional stability of essential cellular structures. Cell. 2013;154(5):971-982. doi:10.1016/j.cell.2013.07.037","ista":"Toyama BH, Savas JN, Park SK, Harris MS, Ingolia NT, Yates JR, Hetzer M. 2013. Identification of long-lived proteins reveals exceptional stability of essential cellular structures. Cell. 154(5), 971–982.","apa":"Toyama, B. H., Savas, J. N., Park, S. K., Harris, M. S., Ingolia, N. T., Yates, J. R., & Hetzer, M. (2013). Identification of long-lived proteins reveals exceptional stability of essential cellular structures. Cell. Elsevier. https://doi.org/10.1016/j.cell.2013.07.037","ieee":"B. H. Toyama et al., “Identification of long-lived proteins reveals exceptional stability of essential cellular structures,” Cell, vol. 154, no. 5. Elsevier, pp. 971–982, 2013.","mla":"Toyama, Brandon H., et al. “Identification of Long-Lived Proteins Reveals Exceptional Stability of Essential Cellular Structures.” Cell, vol. 154, no. 5, Elsevier, 2013, pp. 971–82, doi:10.1016/j.cell.2013.07.037.","short":"B.H. Toyama, J.N. Savas, S.K. Park, M.S. Harris, N.T. Ingolia, J.R. Yates, M. Hetzer, Cell 154 (2013) 971–982.","chicago":"Toyama, Brandon H., Jeffrey N. Savas, Sung Kyu Park, Michael S. Harris, Nicholas T. Ingolia, John R. Yates, and Martin Hetzer. “Identification of Long-Lived Proteins Reveals Exceptional Stability of Essential Cellular Structures.” Cell. Elsevier, 2013. https://doi.org/10.1016/j.cell.2013.07.037."},"article_type":"original","page":"971-982","day":"29","article_processing_charge":"No","scopus_import":"1","keyword":["General Biochemistry","Genetics and Molecular Biology"]},{"extern":"1","year":"2013","pmid":1,"publication_status":"published","publisher":"Elsevier","author":[{"first_name":"Emily M.","last_name":"Hatch","full_name":"Hatch, Emily M."},{"full_name":"Fischer, Andrew H.","first_name":"Andrew H.","last_name":"Fischer"},{"last_name":"Deerinck","first_name":"Thomas J.","full_name":"Deerinck, Thomas J."},{"last_name":"HETZER","first_name":"Martin W","orcid":"0000-0002-2111-992X","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","full_name":"HETZER, Martin W"}],"date_created":"2022-04-07T07:50:51Z","date_updated":"2022-07-18T08:45:47Z","volume":154,"month":"07","publication_identifier":{"issn":["0092-8674"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.cell.2013.06.007"}],"external_id":{"pmid":["23827674"]},"oa":1,"quality_controlled":"1","doi":"10.1016/j.cell.2013.06.007","language":[{"iso":"eng"}],"type":"journal_article","abstract":[{"lang":"eng","text":"During mitotic exit, missegregated chromosomes can recruit their own nuclear envelope (NE) to form micronuclei (MN). MN have reduced functioning compared to primary nuclei in the same cell, although the two compartments appear to be structurally comparable. Here we show that over 60% of MN undergo an irreversible loss of compartmentalization during interphase due to NE collapse. This disruption of the MN, which is induced by defects in nuclear lamina assembly, drastically reduces nuclear functions and can trigger massive DNA damage. MN disruption is associated with chromatin compaction and invasion of endoplasmic reticulum (ER) tubules into the chromatin. We identified disrupted MN in both major subtypes of human non-small-cell lung cancer, suggesting that disrupted MN could be a useful objective biomarker for genomic instability in solid tumors. Our study shows that NE collapse is a key event underlying MN dysfunction and establishes a link between aberrant NE organization and aneuploidy."}],"issue":"1","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","_id":"11085","status":"public","title":"Catastrophic nuclear envelope collapse in cancer cell micronuclei","intvolume":" 154","oa_version":"Published Version","scopus_import":"1","keyword":["General Biochemistry","Genetics and Molecular Biology"],"day":"03","article_processing_charge":"No","publication":"Cell","citation":{"mla":"Hatch, Emily M., et al. “Catastrophic Nuclear Envelope Collapse in Cancer Cell Micronuclei.” Cell, vol. 154, no. 1, Elsevier, 2013, pp. 47–60, doi:10.1016/j.cell.2013.06.007.","short":"E.M. Hatch, A.H. Fischer, T.J. Deerinck, M. Hetzer, Cell 154 (2013) 47–60.","chicago":"Hatch, Emily M., Andrew H. Fischer, Thomas J. Deerinck, and Martin Hetzer. “Catastrophic Nuclear Envelope Collapse in Cancer Cell Micronuclei.” Cell. Elsevier, 2013. https://doi.org/10.1016/j.cell.2013.06.007.","ama":"Hatch EM, Fischer AH, Deerinck TJ, Hetzer M. Catastrophic nuclear envelope collapse in cancer cell micronuclei. Cell. 2013;154(1):47-60. doi:10.1016/j.cell.2013.06.007","ista":"Hatch EM, Fischer AH, Deerinck TJ, Hetzer M. 2013. Catastrophic nuclear envelope collapse in cancer cell micronuclei. Cell. 154(1), 47–60.","apa":"Hatch, E. M., Fischer, A. H., Deerinck, T. J., & Hetzer, M. (2013). Catastrophic nuclear envelope collapse in cancer cell micronuclei. Cell. Elsevier. https://doi.org/10.1016/j.cell.2013.06.007","ieee":"E. M. Hatch, A. H. Fischer, T. J. Deerinck, and M. Hetzer, “Catastrophic nuclear envelope collapse in cancer cell micronuclei,” Cell, vol. 154, no. 1. Elsevier, pp. 47–60, 2013."},"article_type":"original","page":"47-60","date_published":"2013-07-03T00:00:00Z"},{"language":[{"iso":"eng"}],"doi":"10.1016/j.bpj.2013.01.049","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.bpj.2013.01.049"}],"external_id":{"pmid":["23601312"]},"oa":1,"month":"04","publication_identifier":{"issn":["0006-3495"]},"date_updated":"2022-07-18T08:51:01Z","date_created":"2022-04-07T07:51:26Z","volume":104,"author":[{"full_name":"Regner, Benjamin M.","first_name":"Benjamin M.","last_name":"Regner"},{"full_name":"Vučinić, Dejan","first_name":"Dejan","last_name":"Vučinić"},{"last_name":"Domnisoru","first_name":"Cristina","full_name":"Domnisoru, Cristina"},{"full_name":"Bartol, Thomas M.","last_name":"Bartol","first_name":"Thomas M."},{"id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X","first_name":"Martin W","last_name":"HETZER","full_name":"HETZER, Martin W"},{"full_name":"Tartakovsky, Daniel M.","first_name":"Daniel M.","last_name":"Tartakovsky"},{"full_name":"Sejnowski, Terrence J.","last_name":"Sejnowski","first_name":"Terrence J."}],"publication_status":"published","publisher":"Elsevier","year":"2013","pmid":1,"extern":"1","date_published":"2013-04-16T00:00:00Z","article_type":"original","page":"1652-1660","publication":"Biophysical Journal","citation":{"ama":"Regner BM, Vučinić D, Domnisoru C, et al. Anomalous diffusion of single particles in cytoplasm. Biophysical Journal. 2013;104(8):1652-1660. doi:10.1016/j.bpj.2013.01.049","apa":"Regner, B. M., Vučinić, D., Domnisoru, C., Bartol, T. M., Hetzer, M., Tartakovsky, D. M., & Sejnowski, T. J. (2013). Anomalous diffusion of single particles in cytoplasm. Biophysical Journal. Elsevier. https://doi.org/10.1016/j.bpj.2013.01.049","ieee":"B. M. Regner et al., “Anomalous diffusion of single particles in cytoplasm,” Biophysical Journal, vol. 104, no. 8. Elsevier, pp. 1652–1660, 2013.","ista":"Regner BM, Vučinić D, Domnisoru C, Bartol TM, Hetzer M, Tartakovsky DM, Sejnowski TJ. 2013. Anomalous diffusion of single particles in cytoplasm. Biophysical Journal. 104(8), 1652–1660.","short":"B.M. Regner, D. Vučinić, C. Domnisoru, T.M. Bartol, M. Hetzer, D.M. Tartakovsky, T.J. Sejnowski, Biophysical Journal 104 (2013) 1652–1660.","mla":"Regner, Benjamin M., et al. “Anomalous Diffusion of Single Particles in Cytoplasm.” Biophysical Journal, vol. 104, no. 8, Elsevier, 2013, pp. 1652–60, doi:10.1016/j.bpj.2013.01.049.","chicago":"Regner, Benjamin M., Dejan Vučinić, Cristina Domnisoru, Thomas M. Bartol, Martin Hetzer, Daniel M. Tartakovsky, and Terrence J. Sejnowski. “Anomalous Diffusion of Single Particles in Cytoplasm.” Biophysical Journal. Elsevier, 2013. https://doi.org/10.1016/j.bpj.2013.01.049."},"day":"16","article_processing_charge":"No","keyword":["Biophysics"],"scopus_import":"1","oa_version":"Published Version","status":"public","title":"Anomalous diffusion of single particles in cytoplasm","intvolume":" 104","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","_id":"11088","abstract":[{"lang":"eng","text":"The crowded intracellular environment poses a formidable challenge to experimental and theoretical analyses of intracellular transport mechanisms. Our measurements of single-particle trajectories in cytoplasm and their random-walk interpretations elucidate two of these mechanisms: molecular diffusion in crowded environments and cytoskeletal transport along microtubules. We employed acousto-optic deflector microscopy to map out the three-dimensional trajectories of microspheres migrating in the cytosolic fraction of a cellular extract. Classical Brownian motion (BM), continuous time random walk, and fractional BM were alternatively used to represent these trajectories. The comparison of the experimental and numerical data demonstrates that cytoskeletal transport along microtubules and diffusion in the cytosolic fraction exhibit anomalous (nonFickian) behavior and posses statistically distinct signatures. Among the three random-walk models used, continuous time random walk provides the best representation of diffusion, whereas microtubular transport is accurately modeled with fractional BM."}],"issue":"8","type":"journal_article"},{"type":"journal_article","abstract":[{"text":"Nuclear pore complex (NPC) proteins are known for their critical roles in regulating nucleocytoplasmic traffic of macromolecules across the nuclear envelope. However, recent findings suggest that some nucleoporins (Nups), including Nup98, have additional functions in developmental gene regulation. Nup98, which exhibits transcription-dependent mobility at the NPC but can also bind chromatin away from the nuclear envelope, is frequently involved in chromosomal translocations in a subset of patients suffering from acute myeloid leukemia (AML). A common paradigm suggests that Nup98 translocations cause aberrant transcription when they are recuited to aberrant genomic loci. Importantly, this model fails to account for the potential loss of wild type (WT) Nup98 function in the presence of Nup98 translocation mutants. Here we examine how the cell might regulate Nup98 nucleoplasmic protein levels to control transcription in healthy cells. In addition, we discuss the possibility that dominant negative Nup98 fusion proteins disrupt the transcriptional activity of WT Nup98 in the nucleoplasm to drive AML.","lang":"eng"}],"issue":"3","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","_id":"11083","status":"public","title":"The role of Nup98 in transcription regulation in healthy and diseased cells","intvolume":" 23","oa_version":"None","scopus_import":"1","keyword":["Cell Biology"],"day":"01","article_processing_charge":"No","publication":"Trends in Cell Biology","citation":{"ista":"Franks TM, Hetzer M. 2013. The role of Nup98 in transcription regulation in healthy and diseased cells. Trends in Cell Biology. 23(3), 112–117.","ieee":"T. M. Franks and M. Hetzer, “The role of Nup98 in transcription regulation in healthy and diseased cells,” Trends in Cell Biology, vol. 23, no. 3. Elsevier, pp. 112–117, 2013.","apa":"Franks, T. M., & Hetzer, M. (2013). The role of Nup98 in transcription regulation in healthy and diseased cells. Trends in Cell Biology. Elsevier. https://doi.org/10.1016/j.tcb.2012.10.013","ama":"Franks TM, Hetzer M. The role of Nup98 in transcription regulation in healthy and diseased cells. Trends in Cell Biology. 2013;23(3):112-117. doi:10.1016/j.tcb.2012.10.013","chicago":"Franks, Tobias M., and Martin Hetzer. “The Role of Nup98 in Transcription Regulation in Healthy and Diseased Cells.” Trends in Cell Biology. Elsevier, 2013. https://doi.org/10.1016/j.tcb.2012.10.013.","mla":"Franks, Tobias M., and Martin Hetzer. “The Role of Nup98 in Transcription Regulation in Healthy and Diseased Cells.” Trends in Cell Biology, vol. 23, no. 3, Elsevier, 2013, pp. 112–17, doi:10.1016/j.tcb.2012.10.013.","short":"T.M. Franks, M. Hetzer, Trends in Cell Biology 23 (2013) 112–117."},"article_type":"letter_note","page":"112-117","date_published":"2013-03-01T00:00:00Z","extern":"1","year":"2013","pmid":1,"publication_status":"published","publisher":"Elsevier","author":[{"full_name":"Franks, Tobias M.","first_name":"Tobias M.","last_name":"Franks"},{"last_name":"HETZER","first_name":"Martin W","orcid":"0000-0002-2111-992X","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","full_name":"HETZER, Martin W"}],"date_created":"2022-04-07T07:50:33Z","date_updated":"2022-07-18T08:45:34Z","volume":23,"month":"03","publication_identifier":{"issn":["0962-8924"]},"external_id":{"pmid":["23246429"]},"quality_controlled":"1","doi":"10.1016/j.tcb.2012.10.013","language":[{"iso":"eng"}]},{"article_type":"original","page":"55-61","publication":"Nature Reviews Molecular Cell Biology","citation":{"ista":"Toyama BH, Hetzer M. 2013. Protein homeostasis: Live long, won’t prosper. Nature Reviews Molecular Cell Biology. 14, 55–61.","apa":"Toyama, B. H., & Hetzer, M. (2013). Protein homeostasis: Live long, won’t prosper. Nature Reviews Molecular Cell Biology. Springer Nature. https://doi.org/10.1038/nrm3496","ieee":"B. H. Toyama and M. Hetzer, “Protein homeostasis: Live long, won’t prosper,” Nature Reviews Molecular Cell Biology, vol. 14. Springer Nature, pp. 55–61, 2013.","ama":"Toyama BH, Hetzer M. Protein homeostasis: Live long, won’t prosper. Nature Reviews Molecular Cell Biology. 2013;14:55-61. doi:10.1038/nrm3496","chicago":"Toyama, Brandon H., and Martin Hetzer. “Protein Homeostasis: Live Long, Won’t Prosper.” Nature Reviews Molecular Cell Biology. Springer Nature, 2013. https://doi.org/10.1038/nrm3496.","mla":"Toyama, Brandon H., and Martin Hetzer. “Protein Homeostasis: Live Long, Won’t Prosper.” Nature Reviews Molecular Cell Biology, vol. 14, Springer Nature, 2013, pp. 55–61, doi:10.1038/nrm3496.","short":"B.H. Toyama, M. Hetzer, Nature Reviews Molecular Cell Biology 14 (2013) 55–61."},"date_published":"2013-01-01T00:00:00Z","keyword":["Cell Biology","Molecular Biology"],"scopus_import":"1","day":"01","article_processing_charge":"No","status":"public","title":"Protein homeostasis: Live long, won't prosper","intvolume":" 14","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","_id":"11084","oa_version":"None","type":"journal_article","abstract":[{"text":"Protein turnover is an effective way of maintaining a functional proteome, as old and potentially damaged polypeptides are destroyed and replaced by newly synthesized copies. An increasing number of intracellular proteins, however, have been identified that evade this turnover process and instead are maintained over a cell's lifetime. This diverse group of long-lived proteins might be particularly prone to accumulation of damage and thus have a crucial role in the functional deterioration of key regulatory processes during ageing.","lang":"eng"}],"quality_controlled":"1","external_id":{"pmid":["23258296"]},"language":[{"iso":"eng"}],"doi":"10.1038/nrm3496","month":"01","publication_identifier":{"issn":["1471-0072","1471-0080"]},"publication_status":"published","publisher":"Springer Nature","year":"2013","pmid":1,"date_created":"2022-04-07T07:50:43Z","date_updated":"2022-07-18T08:37:53Z","volume":14,"author":[{"full_name":"Toyama, Brandon H.","first_name":"Brandon H.","last_name":"Toyama"},{"id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X","first_name":"Martin W","last_name":"HETZER","full_name":"HETZER, Martin W"}],"extern":"1"},{"type":"journal_article","article_number":"025104","extern":"1","issue":"2","publist_id":"7939","abstract":[{"lang":"eng","text":"We present the design and performance characterization of a new experimental technique for measuring individual particle charges in large ensembles of macroscopic grains. The measurement principle is qualitatively similar to that used in determining the elementary charge by Millikan in that it follows individual particle trajectories. However, by taking advantage of new technology we are able to work with macroscopic grains and achieve several orders of magnitude better resolution in charge to mass ratios. By observing freely falling grains accelerated in a horizontal electric field with a co-falling, high-speed video camera, we dramatically increase particle tracking time and measurement precision. Keeping the granular medium under vacuum, we eliminate air drag, leaving the electrostatic force as the primary source of particle accelerations in the co-moving frame. Because the technique is based on direct imaging, we can distinguish between different particle types during the experiment, opening up the possibility of studying charge transfer processes between different particle species. For the ∼300 μm diameter grains reported here, we achieve an average acceleration resolution of ∼0.008 m/s2, a force resolution of ∼500 pN, and a median charge resolution ∼6× 104 elementary charges per grain (corresponding to surface charge densities ∼1 elementary charges per μm2). The primary source of error is indeterminacy in the grain mass, but with higher resolution cameras and better optics this can be further improved. The high degree of resolution and the ability to visually identify particles of different species or sizes with direct imaging make this a powerful new tool to characterize charging processes in granular media."}],"intvolume":" 84","publisher":"AIP","status":"public","publication_status":"published","title":"In situ granular charge measurement by free-fall videography","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","_id":"115","year":"2013","acknowledgement":"This work was supported financially by the National Science Foundation (NSF) through its Materials Research Science and Engineering Center (MRSEC) program (DMR-0820054) and by the US Army Research Office through Grant No. W911NF-12-1-0182. S.R.W. acknowledges support from a University of Chicago Millikan Fellowship.","volume":84,"oa_version":"None","date_updated":"2021-01-12T06:48:39Z","date_created":"2018-12-11T11:44:42Z","author":[{"full_name":"Waitukaitis, Scott R","orcid":"0000-0002-2299-3176","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","last_name":"Waitukaitis","first_name":"Scott R"},{"first_name":"Heinrich","last_name":"Jaeger","full_name":"Jaeger, Heinrich"}],"month":"02","day":"07","quality_controlled":"1","citation":{"mla":"Waitukaitis, Scott R., and Heinrich Jaeger. “In Situ Granular Charge Measurement by Free-Fall Videography.” Review of Scientific Instruments, vol. 84, no. 2, 025104, AIP, 2013, doi:10.1063/1.4789496.","short":"S.R. Waitukaitis, H. Jaeger, Review of Scientific Instruments 84 (2013).","chicago":"Waitukaitis, Scott R, and Heinrich Jaeger. “In Situ Granular Charge Measurement by Free-Fall Videography.” Review of Scientific Instruments. AIP, 2013. https://doi.org/10.1063/1.4789496.","ama":"Waitukaitis SR, Jaeger H. In situ granular charge measurement by free-fall videography. Review of Scientific Instruments. 2013;84(2). doi:10.1063/1.4789496","ista":"Waitukaitis SR, Jaeger H. 2013. In situ granular charge measurement by free-fall videography. Review of Scientific Instruments. 84(2), 025104.","apa":"Waitukaitis, S. R., & Jaeger, H. (2013). In situ granular charge measurement by free-fall videography. Review of Scientific Instruments. AIP. https://doi.org/10.1063/1.4789496","ieee":"S. R. Waitukaitis and H. Jaeger, “In situ granular charge measurement by free-fall videography,” Review of Scientific Instruments, vol. 84, no. 2. AIP, 2013."},"publication":"Review of Scientific Instruments","language":[{"iso":"eng"}],"date_published":"2013-02-07T00:00:00Z","doi":"10.1063/1.4789496"},{"publication_identifier":{"eissn":["1538-4357"],"issn":["0004-637X"]},"month":"12","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1310.3822"}],"oa":1,"external_id":{"arxiv":["1310.3822"]},"language":[{"iso":"eng"}],"doi":"10.1088/0004-637x/779/2/139","article_number":"139","extern":"1","publisher":"IOP Publishing","publication_status":"published","year":"2013","acknowledgement":"We thank the referee for many helpful comments and suggestions which greatly improved the clarity and quality of this work. D.S. acknowledges financial support from the Netherlands Organisation for Scientific research (NWO) through a Veni fellowship and also funding from the European Community Seventh Framework Programme (FP7/2007-2013) under grant agreement number RG226604 (OPTICON) which allowed access to CFHT time (proposals: 11BO29 & 12AO19). A.M.S. gratefully acknowledges an STFC Advanced Fellowship through grant number ST/H005234/1. I.R.S., J.P.S., and R.G.B. acknowledge support from the UK Science and Technology Facilities Council (STFC) under ST/I001573/1. I.R.S. acknowledges STFC (ST/J001422/1), the ERC Advanced Investigator program DUSTYGAL and a Royal Society/Wolfson Merit Award. P.N.B. acknowledges support from STFC. R.M.S. acknowledges support from the grant ST/1001573/1. The data presented here are based on observations with the KMOS spectrograph on the ESO/VLT under program 60.A-9460 and can be accessed through the ESO data archive. The authors also wish to acknowledge the help from Michael Hilker in preparing the KMOS observations.","volume":779,"date_created":"2022-07-07T09:14:48Z","date_updated":"2022-08-18T10:43:07Z","author":[{"full_name":"Sobral, D.","last_name":"Sobral","first_name":"D."},{"last_name":"Swinbank","first_name":"A. M.","full_name":"Swinbank, A. M."},{"first_name":"J. P.","last_name":"Stott","full_name":"Stott, J. P."},{"last_name":"Matthee","first_name":"Jorryt J","orcid":"0000-0003-2871-127X","id":"7439a258-f3c0-11ec-9501-9df22fe06720","full_name":"Matthee, Jorryt J"},{"last_name":"Bower","first_name":"R. G.","full_name":"Bower, R. G."},{"full_name":"Smail, Ian","first_name":"Ian","last_name":"Smail"},{"full_name":"Best, P.","first_name":"P.","last_name":"Best"},{"full_name":"Geach, J. E.","last_name":"Geach","first_name":"J. E."},{"last_name":"Sharples","first_name":"R. M.","full_name":"Sharples, R. M."}],"keyword":["Space and Planetary Science","Astronomy and Astrophysics","galaxies: evolution – galaxies","high-redshift – galaxies","starburst"],"scopus_import":"1","article_processing_charge":"No","day":"03","article_type":"original","citation":{"ista":"Sobral D, Swinbank AM, Stott JP, Matthee JJ, Bower RG, Smail I, Best P, Geach JE, Sharples RM. 2013. The dynamics of z=0.8 H-alpha-selected star-forming galaxies from KMOS/CF-HiZELS. The Astrophysical Journal. 779(2), 139.","apa":"Sobral, D., Swinbank, A. M., Stott, J. P., Matthee, J. J., Bower, R. G., Smail, I., … Sharples, R. M. (2013). The dynamics of z=0.8 H-alpha-selected star-forming galaxies from KMOS/CF-HiZELS. The Astrophysical Journal. IOP Publishing. https://doi.org/10.1088/0004-637x/779/2/139","ieee":"D. Sobral et al., “The dynamics of z=0.8 H-alpha-selected star-forming galaxies from KMOS/CF-HiZELS,” The Astrophysical Journal, vol. 779, no. 2. IOP Publishing, 2013.","ama":"Sobral D, Swinbank AM, Stott JP, et al. The dynamics of z=0.8 H-alpha-selected star-forming galaxies from KMOS/CF-HiZELS. The Astrophysical Journal. 2013;779(2). doi:10.1088/0004-637x/779/2/139","chicago":"Sobral, D., A. M. Swinbank, J. P. Stott, Jorryt J Matthee, R. G. Bower, Ian Smail, P. Best, J. E. Geach, and R. M. Sharples. “The Dynamics of Z=0.8 H-Alpha-Selected Star-Forming Galaxies from KMOS/CF-HiZELS.” The Astrophysical Journal. IOP Publishing, 2013. https://doi.org/10.1088/0004-637x/779/2/139.","mla":"Sobral, D., et al. “The Dynamics of Z=0.8 H-Alpha-Selected Star-Forming Galaxies from KMOS/CF-HiZELS.” The Astrophysical Journal, vol. 779, no. 2, 139, IOP Publishing, 2013, doi:10.1088/0004-637x/779/2/139.","short":"D. Sobral, A.M. Swinbank, J.P. Stott, J.J. Matthee, R.G. Bower, I. Smail, P. Best, J.E. Geach, R.M. Sharples, The Astrophysical Journal 779 (2013)."},"publication":"The Astrophysical Journal","date_published":"2013-12-03T00:00:00Z","type":"journal_article","issue":"2","abstract":[{"lang":"eng","text":"We present the spatially resolved Hα dynamics of 16 star-forming galaxies at z ∼ 0.81 using the new KMOS multi-object integral field spectrograph on the ESO Very Large Telescope. These galaxies, selected using 1.18 μm narrowband imaging from the 10 deg2 CFHT-HiZELS survey of the SA 22 hr field, are found in a ∼4 Mpc overdensity of Hα emitters and likely reside in a group/intermediate environment, but not a cluster. We confirm and identify a rich group of star-forming galaxies at z = 0.813 ± 0.003, with 13 galaxies within 1000 km s−1 of each other, and seven within a diameter of 3 Mpc. All of our galaxies are “typical” star-forming galaxies at their redshift, 0.8 ± 0.4 SFR$^*_{z = 0.8}$, spanning a range of specific star formation rates (sSFRs) of 0.2–1.1 Gyr−1 and have a median metallicity very close to solar of 12 + log(O/H) = 8.62 ± 0.06. We measure the spatially resolved Hα dynamics of the galaxies in our sample and show that 13 out of 16 galaxies can be described by rotating disks and use the data to derive inclination corrected rotation speeds of 50–275 km s−1. The fraction of disks within our sample is 75% ± 8%, consistent with previous results based on Hubble Space Telescope morphologies of Hα-selected galaxies at z ∼ 1 and confirming that disks dominate the SFR density at z ∼ 1. Our Hα galaxies are well fitted by the z ∼ 1–2 Tully–Fisher (TF) relation, confirming the evolution seen in the zero point. Apart from having, on average, higher stellar masses and lower sSFRs, our group galaxies at z = 0.81 present the same mass–metallicity and TF relation as z ∼ 1 field galaxies and are all disk galaxies."}],"intvolume":" 779","status":"public","title":"The dynamics of z=0.8 H-alpha-selected star-forming galaxies from KMOS/CF-HiZELS","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"11520","oa_version":"Preprint"},{"doi":"10.1209/0295-5075/102/44001","date_published":"2013-05-24T00:00:00Z","language":[{"iso":"eng"}],"publication":"EPL","citation":{"mla":"Waitukaitis, Scott R., et al. “Dynamic Jamming Fronts.” EPL, vol. 102, no. 4, 44001, Elsevier, 2013, doi:10.1209/0295-5075/102/44001.","short":"S.R. Waitukaitis, L. Roth, V. Vitelli, H. Jaeger, EPL 102 (2013).","chicago":"Waitukaitis, Scott R, Leah Roth, Vincenzo Vitelli, and Heinrich Jaeger. “Dynamic Jamming Fronts.” EPL. Elsevier, 2013. https://doi.org/10.1209/0295-5075/102/44001.","ama":"Waitukaitis SR, Roth L, Vitelli V, Jaeger H. Dynamic jamming fronts. EPL. 2013;102(4). doi:10.1209/0295-5075/102/44001","ista":"Waitukaitis SR, Roth L, Vitelli V, Jaeger H. 2013. Dynamic jamming fronts. EPL. 102(4), 44001.","apa":"Waitukaitis, S. R., Roth, L., Vitelli, V., & Jaeger, H. (2013). Dynamic jamming fronts. EPL. Elsevier. https://doi.org/10.1209/0295-5075/102/44001","ieee":"S. R. Waitukaitis, L. Roth, V. Vitelli, and H. Jaeger, “Dynamic jamming fronts,” EPL, vol. 102, no. 4. Elsevier, 2013."},"quality_controlled":"1","day":"24","month":"05","author":[{"last_name":"Waitukaitis","first_name":"Scott R","orcid":"0000-0002-2299-3176","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","full_name":"Waitukaitis, Scott R"},{"full_name":"Roth, Leah","last_name":"Roth","first_name":"Leah"},{"full_name":"Vitelli, Vincenzo","last_name":"Vitelli","first_name":"Vincenzo"},{"full_name":"Jaeger, Heinrich","last_name":"Jaeger","first_name":"Heinrich"}],"date_created":"2018-12-11T11:44:43Z","date_updated":"2021-01-12T06:48:44Z","oa_version":"None","volume":102,"_id":"116","year":"2013","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","acknowledgement":"This work was supported by the National Science Foundation (NSF) through its Materials Research Science and Engineering program (DMR-0820054). SRW was supported by the U.S. Department of Energy, Office of Basic Energy Sciences, Division of Materials Sciences and Engineering under Award DE-FG02-03ER46088. LKR acknowledges support through the NSF Research Experience for Undergraduates program.","status":"public","title":"Dynamic jamming fronts","publication_status":"published","intvolume":" 102","publisher":"Elsevier","abstract":[{"lang":"eng","text":"We describe a model experiment for dynamic jamming: a two-dimensional collection of initially unjammed disks that are forced into the jammed state by uniaxial compression via a rake. This leads to a stable densification front that travels ahead of the rake, leaving regions behind it jammed. Using disk conservation in conjunction with an upper limit to the packing fraction at jamming onset, we predict the front speed as a function of packing fraction and rake speed. However, we find that the jamming front has a finite width, a feature that cannot be explained by disk conservation alone. This width appears to diverge on approach to jamming, which suggests that it may be related to growing lengthscales encountered in other jamming studies."}],"issue":"4","publist_id":"7938","extern":"1","article_number":"44001","type":"journal_article"},{"date_published":"2013-03-01T00:00:00Z","publication":"ACM Transactions on the Web","citation":{"mla":"Baykan, Eda, et al. “A Comprehensive Study of Techniques for URL-Based Web Page Language Classification.” ACM Transactions on the Web, vol. 7, no. 1, 3, Association for Computing Machinery, 2013, doi:10.1145/2435215.2435218.","short":"E. Baykan, I. Weber, M.H. Henzinger, ACM Transactions on the Web 7 (2013).","chicago":"Baykan, Eda, Ingmar Weber, and Monika H Henzinger. “A Comprehensive Study of Techniques for URL-Based Web Page Language Classification.” ACM Transactions on the Web. Association for Computing Machinery, 2013. https://doi.org/10.1145/2435215.2435218.","ama":"Baykan E, Weber I, Henzinger MH. A comprehensive study of techniques for URL-based web page language classification. ACM Transactions on the Web. 2013;7(1). doi:10.1145/2435215.2435218","ista":"Baykan E, Weber I, Henzinger MH. 2013. A comprehensive study of techniques for URL-based web page language classification. ACM Transactions on the Web. 7(1), 3.","apa":"Baykan, E., Weber, I., & Henzinger, M. H. (2013). A comprehensive study of techniques for URL-based web page language classification. ACM Transactions on the Web. Association for Computing Machinery. https://doi.org/10.1145/2435215.2435218","ieee":"E. Baykan, I. Weber, and M. H. Henzinger, “A comprehensive study of techniques for URL-based web page language classification,” ACM Transactions on the Web, vol. 7, no. 1. Association for Computing Machinery, 2013."},"article_type":"original","day":"01","article_processing_charge":"No","scopus_import":"1","keyword":["Computer Networks and Communications"],"oa_version":"None","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"11671","title":"A comprehensive study of techniques for URL-based web page language classification","status":"public","intvolume":" 7","abstract":[{"text":"Given only the URL of a Web page, can we identify its language? In this article we examine this question. URL-based language classification is useful when the content of the Web page is not available or downloading the content is a waste of bandwidth and time.\r\nWe built URL-based language classifiers for English, German, French, Spanish, and Italian by applying a variety of algorithms and features. As algorithms we used machine learning algorithms which are widely applied for text classification and state-of-art algorithms for language identification of text. As features we used words, various sized n-grams, and custom-made features (our novel feature set). We compared our approaches with two baseline methods, namely classification by country code top-level domains and classification by IP addresses of the hosting Web servers.\r\n\r\nWe trained and tested our classifiers in a 10-fold cross-validation setup on a dataset obtained from the Open Directory Project and from querying a commercial search engine. We obtained the lowest F1-measure for English (94) and the highest F1-measure for German (98) with the best performing classifiers.\r\n\r\nWe also evaluated the performance of our methods: (i) on a set of Web pages written in Adobe Flash and (ii) as part of a language-focused crawler. In the first case, the content of the Web page is hard to extract and in the second page downloading pages of the “wrong” language constitutes a waste of bandwidth. In both settings the best classifiers have a high accuracy with an F1-measure between 95 (for English) and 98 (for Italian) for the Adobe Flash pages and a precision between 90 (for Italian) and 97 (for French) for the language-focused crawler.","lang":"eng"}],"issue":"1","type":"journal_article","doi":"10.1145/2435215.2435218","language":[{"iso":"eng"}],"quality_controlled":"1","month":"03","publication_identifier":{"eissn":["1559-114X"],"issn":["1559-1131"]},"author":[{"full_name":"Baykan, Eda","first_name":"Eda","last_name":"Baykan"},{"full_name":"Weber, Ingmar","first_name":"Ingmar","last_name":"Weber"},{"first_name":"Monika H","last_name":"Henzinger","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","orcid":"0000-0002-5008-6530","full_name":"Henzinger, Monika H"}],"date_created":"2022-07-27T12:50:18Z","date_updated":"2022-09-12T08:51:57Z","volume":7,"year":"2013","publication_status":"published","publisher":"Association for Computing Machinery","extern":"1","article_number":"3"},{"author":[{"last_name":"Jaeger","first_name":"Heinrich","full_name":"Jaeger, Heinrich"},{"full_name":"Miskin, Marc","first_name":"Marc","last_name":"Miskin"},{"id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2299-3176","first_name":"Scott R","last_name":"Waitukaitis","full_name":"Waitukaitis, Scott R"}],"date_updated":"2021-01-12T06:48:49Z","date_created":"2018-12-11T11:44:43Z","volume":1542,"oa_version":"None","_id":"117","acknowledgement":"This work was supported by the NSF MRSEC program under DMR-0820054. Additional support came from the US Army Research Office through W911NF-12-1-0182.","year":"2013","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","title":"From nanoscale cohesion to macroscale entanglement: opportunities for designing granular aggregate behaviour by tailoring grain shape and interactions","publication_status":"published","status":"public","publisher":"AIP","intvolume":" 1542","abstract":[{"text":"The packing arrangement of individual particles inside a granular material and the resulting response to applied stresses depend critically on particle-particle interactions. One aspect that recently received attention are nanoscale surface features of particles, which play an important role in determining the strength of cohesive van der Waals and capillary interactions and also affect tribo-charging of grains. We describe experiments on freely falling granular streams that can detect the contributions from all three of these forces. We show that it is possible to measure the charge of individual grains and build up distributions that are detailed enough to provide stringent tests of tribo-charging models currently available. A second aspect concerns particle shape. In this case steric interactions become important and new types of aggregate behavior can be expected when non-convex particle shapes are considered that can interlock or entangle. However, a general connection between the mechanical response of a granular material and the constituents\\' shape remains unknown. This has made it infeasible to tackle the "inverse packing problem", namely to start from a given, desired behavior for the aggregate as a whole and then find the particle shape the produces it. We discuss a new approach, using concepts rooted in artificial evolution that provides a way to solve this inverse problem. This approach facilitates exploring the role of arbitrary particle geometry in jammed systems and invites the discovery and design of granular matter with optimized properties.","lang":"eng"}],"publist_id":"7937","extern":"1","type":"conference","conference":{"end_date":"2013-07-12","location":"Sydney, Australia","start_date":"2013-07-08","name":"Powders and Grains"},"date_published":"2013-06-01T00:00:00Z","doi":"10.1063/1.4811858","language":[{"iso":"eng"}],"publication":" AIP Conference Proceedings","citation":{"ama":"Jaeger H, Miskin M, Waitukaitis SR. From nanoscale cohesion to macroscale entanglement: opportunities for designing granular aggregate behaviour by tailoring grain shape and interactions. In: AIP Conference Proceedings. Vol 1542. AIP; 2013:3-6. doi:10.1063/1.4811858","ista":"Jaeger H, Miskin M, Waitukaitis SR. 2013. From nanoscale cohesion to macroscale entanglement: opportunities for designing granular aggregate behaviour by tailoring grain shape and interactions. AIP Conference Proceedings. Powders and Grains vol. 1542, 3–6.","apa":"Jaeger, H., Miskin, M., & Waitukaitis, S. R. (2013). From nanoscale cohesion to macroscale entanglement: opportunities for designing granular aggregate behaviour by tailoring grain shape and interactions. In AIP Conference Proceedings (Vol. 1542, pp. 3–6). Sydney, Australia: AIP. https://doi.org/10.1063/1.4811858","ieee":"H. Jaeger, M. Miskin, and S. R. Waitukaitis, “From nanoscale cohesion to macroscale entanglement: opportunities for designing granular aggregate behaviour by tailoring grain shape and interactions,” in AIP Conference Proceedings, Sydney, Australia, 2013, vol. 1542, pp. 3–6.","mla":"Jaeger, Heinrich, et al. “From Nanoscale Cohesion to Macroscale Entanglement: Opportunities for Designing Granular Aggregate Behaviour by Tailoring Grain Shape and Interactions.” AIP Conference Proceedings, vol. 1542, AIP, 2013, pp. 3–6, doi:10.1063/1.4811858.","short":"H. Jaeger, M. Miskin, S.R. Waitukaitis, in:, AIP Conference Proceedings, AIP, 2013, pp. 3–6.","chicago":"Jaeger, Heinrich, Marc Miskin, and Scott R Waitukaitis. “From Nanoscale Cohesion to Macroscale Entanglement: Opportunities for Designing Granular Aggregate Behaviour by Tailoring Grain Shape and Interactions.” In AIP Conference Proceedings, 1542:3–6. AIP, 2013. https://doi.org/10.1063/1.4811858."},"quality_controlled":"1","page":"3 - 6","day":"01","month":"06"},{"extern":"1","volume":113,"date_created":"2022-08-08T11:29:08Z","date_updated":"2022-09-12T09:36:15Z","author":[{"full_name":"Dütting, Paul","last_name":"Dütting","first_name":"Paul"},{"full_name":"Henzinger, Monika H","last_name":"Henzinger","first_name":"Monika H","orcid":"0000-0002-5008-6530","id":"540c9bbd-f2de-11ec-812d-d04a5be85630"},{"first_name":"Ingmar","last_name":"Weber","full_name":"Weber, Ingmar"}],"publisher":"Elsevier","publication_status":"published","year":"2013","publication_identifier":{"issn":["0020-0190"]},"month":"02","language":[{"iso":"eng"}],"doi":"10.1016/j.ipl.2012.11.006","quality_controlled":"1","main_file_link":[{"url":"https://arxiv.org/abs/0912.1934","open_access":"1"}],"external_id":{"arxiv":["0912.1934"]},"oa":1,"issue":"3","abstract":[{"lang":"eng","text":"Matching markets play a prominent role in economic theory. A prime example of such a market is the sponsored search market. Here, as in other markets of that kind, market equilibria correspond to feasible, envy free, and bidder optimal outcomes. For settings without budgets such an outcome always exists and can be computed in polynomial-time by the so-called Hungarian Method. Moreover, every mechanism that computes such an outcome is incentive compatible. We show that the Hungarian Method can be modified so that it finds a feasible, envy free, and bidder optimal outcome for settings with budgets. We also show that in settings with budgets no mechanism that computes such an outcome can be incentive compatible for all inputs. For inputs in general position, however, the presented mechanism—as any other mechanism that computes such an outcome for settings with budgets—is incentive compatible."}],"type":"journal_article","oa_version":"Preprint","intvolume":" 113","title":"Sponsored search, market equilibria, and the Hungarian Method","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"11759","article_processing_charge":"No","day":"15","scopus_import":"1","date_published":"2013-02-15T00:00:00Z","page":"67-73","article_type":"original","citation":{"short":"P. Dütting, M.H. Henzinger, I. Weber, Information Processing Letters 113 (2013) 67–73.","mla":"Dütting, Paul, et al. “Sponsored Search, Market Equilibria, and the Hungarian Method.” Information Processing Letters, vol. 113, no. 3, Elsevier, 2013, pp. 67–73, doi:10.1016/j.ipl.2012.11.006.","chicago":"Dütting, Paul, Monika H Henzinger, and Ingmar Weber. “Sponsored Search, Market Equilibria, and the Hungarian Method.” Information Processing Letters. Elsevier, 2013. https://doi.org/10.1016/j.ipl.2012.11.006.","ama":"Dütting P, Henzinger MH, Weber I. Sponsored search, market equilibria, and the Hungarian Method. Information Processing Letters. 2013;113(3):67-73. doi:10.1016/j.ipl.2012.11.006","ieee":"P. Dütting, M. H. Henzinger, and I. Weber, “Sponsored search, market equilibria, and the Hungarian Method,” Information Processing Letters, vol. 113, no. 3. Elsevier, pp. 67–73, 2013.","apa":"Dütting, P., Henzinger, M. H., & Weber, I. (2013). Sponsored search, market equilibria, and the Hungarian Method. Information Processing Letters. Elsevier. https://doi.org/10.1016/j.ipl.2012.11.006","ista":"Dütting P, Henzinger MH, Weber I. 2013. Sponsored search, market equilibria, and the Hungarian Method. Information Processing Letters. 113(3), 67–73."},"publication":"Information Processing Letters"},{"type":"conference","alternative_title":["LNCS"],"abstract":[{"text":"We study the problem of maintaining a breadth-first spanning tree (BFS tree) in partially dynamic distributed networks modeling a sequence of either failures or additions of communication links (but not both). We show (1 + ε)-approximation algorithms whose amortized time (over some number of link changes) is sublinear in D, the maximum diameter of the network. This breaks the Θ(D) time bound of recomputing “from scratch”.\r\n\r\nOur technique also leads to a (1 + ε)-approximate incremental algorithm for single-source shortest paths (SSSP) in the sequential (usual RAM) model. Prior to our work, the state of the art was the classic exact algorithm of [9] that is optimal under some assumptions [27]. Our result is the first to show that, in the incremental setting, this bound can be beaten in certain cases if a small approximation is allowed.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"11793","status":"public","title":"Sublinear-time maintenance of breadth-first spanning tree in partially dynamic networks","intvolume":" 7966","oa_version":"Preprint","scopus_import":"1","day":"01","article_processing_charge":"No","publication":"40th International Colloquium on Automata, Languages, and Programming","citation":{"mla":"Henzinger, Monika H., et al. “Sublinear-Time Maintenance of Breadth-First Spanning Tree in Partially Dynamic Networks.” 40th International Colloquium on Automata, Languages, and Programming, vol. 7966, Springer Nature, 2013, pp. 607–619, doi:10.1007/978-3-642-39212-2_53.","short":"M.H. Henzinger, S. Krinninger, D. Nanongkai, in:, 40th International Colloquium on Automata, Languages, and Programming, Springer Nature, 2013, pp. 607–619.","chicago":"Henzinger, Monika H, Sebastian Krinninger, and Danupon Nanongkai. “Sublinear-Time Maintenance of Breadth-First Spanning Tree in Partially Dynamic Networks.” In 40th International Colloquium on Automata, Languages, and Programming, 7966:607–619. Springer Nature, 2013. https://doi.org/10.1007/978-3-642-39212-2_53.","ama":"Henzinger MH, Krinninger S, Nanongkai D. Sublinear-time maintenance of breadth-first spanning tree in partially dynamic networks. In: 40th International Colloquium on Automata, Languages, and Programming. Vol 7966. Springer Nature; 2013:607–619. doi:10.1007/978-3-642-39212-2_53","ista":"Henzinger MH, Krinninger S, Nanongkai D. 2013. Sublinear-time maintenance of breadth-first spanning tree in partially dynamic networks. 40th International Colloquium on Automata, Languages, and Programming. ICALP: International Colloquium on Automata, Languages, and Programming, LNCS, vol. 7966, 607–619.","apa":"Henzinger, M. H., Krinninger, S., & Nanongkai, D. (2013). Sublinear-time maintenance of breadth-first spanning tree in partially dynamic networks. In 40th International Colloquium on Automata, Languages, and Programming (Vol. 7966, pp. 607–619). Riga, Latvia: Springer Nature. https://doi.org/10.1007/978-3-642-39212-2_53","ieee":"M. H. Henzinger, S. Krinninger, and D. Nanongkai, “Sublinear-time maintenance of breadth-first spanning tree in partially dynamic networks,” in 40th International Colloquium on Automata, Languages, and Programming, Riga, Latvia, 2013, vol. 7966, pp. 607–619."},"page":"607–619","date_published":"2013-07-01T00:00:00Z","extern":"1","year":"2013","publication_status":"published","publisher":"Springer Nature","author":[{"last_name":"Henzinger","first_name":"Monika H","orcid":"0000-0002-5008-6530","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","full_name":"Henzinger, Monika H"},{"last_name":"Krinninger","first_name":"Sebastian","full_name":"Krinninger, Sebastian"},{"full_name":"Nanongkai, Danupon","last_name":"Nanongkai","first_name":"Danupon"}],"related_material":{"record":[{"id":"11793","relation":"later_version","status":"public"}]},"date_updated":"2023-02-21T16:28:26Z","date_created":"2022-08-11T11:25:13Z","volume":7966,"month":"07","publication_identifier":{"isbn":["9783642392115"],"issn":["1611-3349"]},"oa":1,"external_id":{"arxiv":["1512.08147"]},"main_file_link":[{"url":"https://arxiv.org/abs/1512.08147","open_access":"1"}],"quality_controlled":"1","conference":{"name":"ICALP: International Colloquium on Automata, Languages, and Programming","start_date":"2013-07-08","location":"Riga, Latvia","end_date":"2013-07-12"},"doi":"10.1007/978-3-642-39212-2_53","language":[{"iso":"eng"}]},{"type":"conference","alternative_title":["LNCS"],"abstract":[{"lang":"eng","text":"The focus of classic mechanism design has been on truthful direct-revelation mechanisms. In the context of combinatorial auctions the truthful direct-revelation mechanism that maximizes social welfare is the VCG mechanism. For many valuation spaces computing the allocation and payments of the VCG mechanism, however, is a computationally hard problem. We thus study the performance of the VCG mechanism when bidders are forced to choose bids from a subspace of the valuation space for which the VCG outcome can be computed efficiently. We prove improved upper bounds on the welfare loss for restrictions to additive bids and upper and lower bounds for restrictions to non-additive bids. These bounds show that the welfare loss increases in expressiveness. All our bounds apply to equilibrium concepts that can be computed in polynomial time as well as to learning outcomes."}],"_id":"11791","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 8289","title":"Valuation compressions in VCG-based combinatorial auctions","status":"public","oa_version":"Preprint","scopus_import":"1","article_processing_charge":"No","day":"01","citation":{"ista":"Dütting P, Henzinger MH, Starnberger M. 2013. Valuation compressions in VCG-based combinatorial auctions. 9th International Conference on Web and Internet Economics. WINE: International Conference on Web and Internet Economics, LNCS, vol. 8289, 146–159.","apa":"Dütting, P., Henzinger, M. H., & Starnberger, M. (2013). Valuation compressions in VCG-based combinatorial auctions. In 9th International Conference on Web and Internet Economics (Vol. 8289, pp. 146–159). Cambridge, MA, USA: Springer Nature. https://doi.org/10.1007/978-3-642-45046-4_13","ieee":"P. Dütting, M. H. Henzinger, and M. Starnberger, “Valuation compressions in VCG-based combinatorial auctions,” in 9th International Conference on Web and Internet Economics, Cambridge, MA, USA, 2013, vol. 8289, pp. 146–159.","ama":"Dütting P, Henzinger MH, Starnberger M. Valuation compressions in VCG-based combinatorial auctions. In: 9th International Conference on Web and Internet Economics. Vol 8289. Springer Nature; 2013:146–159. doi:10.1007/978-3-642-45046-4_13","chicago":"Dütting, Paul, Monika H Henzinger, and Martin Starnberger. “Valuation Compressions in VCG-Based Combinatorial Auctions.” In 9th International Conference on Web and Internet Economics, 8289:146–159. Springer Nature, 2013. https://doi.org/10.1007/978-3-642-45046-4_13.","mla":"Dütting, Paul, et al. “Valuation Compressions in VCG-Based Combinatorial Auctions.” 9th International Conference on Web and Internet Economics, vol. 8289, Springer Nature, 2013, pp. 146–159, doi:10.1007/978-3-642-45046-4_13.","short":"P. Dütting, M.H. Henzinger, M. Starnberger, in:, 9th International Conference on Web and Internet Economics, Springer Nature, 2013, pp. 146–159."},"publication":"9th International Conference on Web and Internet Economics","page":"146–159","date_published":"2013-12-01T00:00:00Z","extern":"1","year":"2013","publisher":"Springer Nature","publication_status":"published","author":[{"last_name":"Dütting","first_name":"Paul","full_name":"Dütting, Paul"},{"first_name":"Monika H","last_name":"Henzinger","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","orcid":"0000-0002-5008-6530","full_name":"Henzinger, Monika H"},{"last_name":"Starnberger","first_name":"Martin","full_name":"Starnberger, Martin"}],"volume":8289,"date_created":"2022-08-11T11:05:14Z","date_updated":"2023-02-13T11:20:42Z","publication_identifier":{"issn":["1611-3349"],"isbn":["9783642450457"]},"month":"12","external_id":{"arxiv":["1310.3153"]},"oa":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1310.3153"}],"quality_controlled":"1","doi":"10.1007/978-3-642-45046-4_13","conference":{"name":"WINE: International Conference on Web and Internet Economics","end_date":"2013-12-14","start_date":"2013-12-01","location":"Cambridge, MA, USA"},"language":[{"iso":"eng"}]},{"extern":"1","related_material":{"record":[{"status":"public","relation":"later_version","id":"11792"}]},"author":[{"full_name":"Dvořák, Wolfgang","first_name":"Wolfgang","last_name":"Dvořák"},{"last_name":"Henzinger","first_name":"Monika H","orcid":"0000-0002-5008-6530","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","full_name":"Henzinger, Monika H"},{"full_name":"Williamson, David P.","first_name":"David P.","last_name":"Williamson"}],"volume":8125,"date_updated":"2023-02-21T16:28:24Z","date_created":"2022-08-11T11:18:19Z","year":"2013","publisher":"Springer Nature","publication_status":"published","publication_identifier":{"issn":["1611-3349"],"isbn":["9783642404498"]},"month":"09","doi":"10.1007/978-3-642-40450-4_35","conference":{"end_date":"2013-09-04","start_date":"2013-09-02","location":"Sophia Antipolis, France","name":"ESA: European Symposium on Algorithms"},"language":[{"iso":"eng"}],"external_id":{"arxiv":["1611.05753"]},"oa":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1611.05753"}],"quality_controlled":"1","abstract":[{"lang":"eng","text":"We study the problem of maximizing a monotone submodular function with viability constraints. This problem originates from computational biology, where we are given a phylogenetic tree over a set of species and a directed graph, the so-called food web, encoding viability constraints between these species. These food webs usually have constant depth. The goal is to select a subset of k species that satisfies the viability constraints and has maximal phylogenetic diversity. As this problem is known to be NP-hard, we investigate approximation algorithm. We present the first constant factor approximation algorithm if the depth is constant. Its approximation ratio is (1−1𝑒√). This algorithm not only applies to phylogenetic trees with viability constraints but for arbitrary monotone submodular set functions with viability constraints. Second, we show that there is no (1 − 1/e + ε)-approximation algorithm for our problem setting (even for additive functions) and that there is no approximation algorithm for a slight extension of this setting."}],"type":"conference","alternative_title":["LNCS"],"oa_version":"Preprint","_id":"11792","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 8125","title":"Maximizing a submodular function with viability constraints","status":"public","article_processing_charge":"No","day":"01","scopus_import":"1","date_published":"2013-09-01T00:00:00Z","citation":{"chicago":"Dvořák, Wolfgang, Monika H Henzinger, and David P. Williamson. “Maximizing a Submodular Function with Viability Constraints.” In 21st Annual European Symposium on Algorithms, 8125:409–20. Springer Nature, 2013. https://doi.org/10.1007/978-3-642-40450-4_35.","short":"W. Dvořák, M.H. Henzinger, D.P. Williamson, in:, 21st Annual European Symposium on Algorithms, Springer Nature, 2013, pp. 409–420.","mla":"Dvořák, Wolfgang, et al. “Maximizing a Submodular Function with Viability Constraints.” 21st Annual European Symposium on Algorithms, vol. 8125, Springer Nature, 2013, pp. 409–20, doi:10.1007/978-3-642-40450-4_35.","apa":"Dvořák, W., Henzinger, M. H., & Williamson, D. P. (2013). Maximizing a submodular function with viability constraints. In 21st Annual European Symposium on Algorithms (Vol. 8125, pp. 409–420). Sophia Antipolis, France: Springer Nature. https://doi.org/10.1007/978-3-642-40450-4_35","ieee":"W. Dvořák, M. H. Henzinger, and D. P. Williamson, “Maximizing a submodular function with viability constraints,” in 21st Annual European Symposium on Algorithms, Sophia Antipolis, France, 2013, vol. 8125, pp. 409–420.","ista":"Dvořák W, Henzinger MH, Williamson DP. 2013. Maximizing a submodular function with viability constraints. 21st Annual European Symposium on Algorithms. ESA: European Symposium on Algorithms, LNCS, vol. 8125, 409–420.","ama":"Dvořák W, Henzinger MH, Williamson DP. Maximizing a submodular function with viability constraints. In: 21st Annual European Symposium on Algorithms. Vol 8125. Springer Nature; 2013:409-420. doi:10.1007/978-3-642-40450-4_35"},"publication":"21st Annual European Symposium on Algorithms","page":"409 - 420"},{"title":"Dynamic approximate all-pairs shortest paths: Breaking the O(mn) barrier and derandomization","publication_status":"published","status":"public","publisher":"Institute of Electrical and Electronics Engineers","_id":"11856","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2013","date_created":"2022-08-16T08:22:37Z","date_updated":"2023-02-17T09:56:04Z","oa_version":"Preprint","author":[{"orcid":"0000-0002-5008-6530","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","last_name":"Henzinger","first_name":"Monika H","full_name":"Henzinger, Monika H"},{"full_name":"Krinninger, Sebastian","first_name":"Sebastian","last_name":"Krinninger"},{"full_name":"Nanongkai, Danupon","first_name":"Danupon","last_name":"Nanongkai"}],"type":"conference","extern":"1","abstract":[{"text":"We study dynamic (1 + ϵ)-approximation algorithms for the all-pairs shortest paths problem in unweighted undirected n-node m-edge graphs under edge deletions. The fastest algorithm for this problem is a randomized algorithm with a total update time of Ȏ(mn) and constant query time by Roditty and Zwick (FOCS 2004). The fastest deterministic algorithm is from a 1981 paper by Even and Shiloach (JACM 1981); it has a total update time of O(mn 2 ) and constant query time. We improve these results as follows: (1) We present an algorithm with a total update time of Ȏ(n 5/2 ) and constant query time that has an additive error of two in addition to the 1 + ϵ multiplicative error. This beats the previous Ȏ(mn) time when m = Ω(n 3/2 ). Note that the additive error is unavoidable since, even in the static case, an O(n 3-δ )-time (a so-called truly sub cubic) combinatorial algorithm with 1 + ϵ multiplicative error cannot have an additive error less than 2 - ϵ, unless we make a major breakthrough for Boolean matrix multiplication (Dor, Halperin and Zwick FOCS 1996) and many other long-standing problems (Vassilevska Williams and Williams FOCS 2010). The algorithm can also be turned into a (2 + ϵ)-approximation algorithm (without an additive error) with the same time guarantees, improving the recent (3 + ϵ)-approximation algorithm with Ȏ(n 5/2+O(1√(log n)) ) running time of Bernstein and Roditty (SODA 2011) in terms of both approximation and time guarantees. (2) We present a deterministic algorithm with a total update time of Ȏ(mn) and a query time of O(log log n). The algorithm has a multiplicative error of 1 + ϵ and gives the first improved deterministic algorithm since 1981. It also answers an open question raised by Bernstein in his STOC 2013 paper. In order to achieve our results, we introduce two new techniques: (1) A lazy Even-Shiloach tree algorithm which maintains a bounded-distance shortest-paths tree on a certain type of emulator called locally persevering emulator. (2) A derandomization technique based on moving Even-Shiloach trees as a way to derandomize the standard random set argument. These techniques might be of independent interest.","lang":"eng"}],"quality_controlled":"1","page":"538-547","publication":"54th Annual Symposium on Foundations of Computer Science","external_id":{"arxiv":["1308.0776"]},"citation":{"apa":"Henzinger, M. H., Krinninger, S., & Nanongkai, D. (2013). Dynamic approximate all-pairs shortest paths: Breaking the O(mn) barrier and derandomization. In 54th Annual Symposium on Foundations of Computer Science (pp. 538–547). Berkeley, CA, United States: Institute of Electrical and Electronics Engineers. https://doi.org/10.1109/focs.2013.64","ieee":"M. H. Henzinger, S. Krinninger, and D. Nanongkai, “Dynamic approximate all-pairs shortest paths: Breaking the O(mn) barrier and derandomization,” in 54th Annual Symposium on Foundations of Computer Science, Berkeley, CA, United States, 2013, pp. 538–547.","ista":"Henzinger MH, Krinninger S, Nanongkai D. 2013. Dynamic approximate all-pairs shortest paths: Breaking the O(mn) barrier and derandomization. 54th Annual Symposium on Foundations of Computer Science. FOCS: Symposium on Foundations of Computer Science, 538–547.","ama":"Henzinger MH, Krinninger S, Nanongkai D. Dynamic approximate all-pairs shortest paths: Breaking the O(mn) barrier and derandomization. In: 54th Annual Symposium on Foundations of Computer Science. Institute of Electrical and Electronics Engineers; 2013:538-547. doi:10.1109/focs.2013.64","chicago":"Henzinger, Monika H, Sebastian Krinninger, and Danupon Nanongkai. “Dynamic Approximate All-Pairs Shortest Paths: Breaking the O(Mn) Barrier and Derandomization.” In 54th Annual Symposium on Foundations of Computer Science, 538–47. Institute of Electrical and Electronics Engineers, 2013. https://doi.org/10.1109/focs.2013.64.","short":"M.H. Henzinger, S. Krinninger, D. Nanongkai, in:, 54th Annual Symposium on Foundations of Computer Science, Institute of Electrical and Electronics Engineers, 2013, pp. 538–547.","mla":"Henzinger, Monika H., et al. “Dynamic Approximate All-Pairs Shortest Paths: Breaking the O(Mn) Barrier and Derandomization.” 54th Annual Symposium on Foundations of Computer Science, Institute of Electrical and Electronics Engineers, 2013, pp. 538–47, doi:10.1109/focs.2013.64."},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1308.0776"}],"oa":1,"language":[{"iso":"eng"}],"conference":{"end_date":"2013-10-29","location":"Berkeley, CA, United States","start_date":"2013-10-26","name":"FOCS: Symposium on Foundations of Computer Science"},"date_published":"2013-10-01T00:00:00Z","doi":"10.1109/focs.2013.64","scopus_import":"1","day":"01","month":"10","publication_identifier":{"eisbn":["978-0-7695-5135-7"],"issn":["0272-5428"]},"article_processing_charge":"No"},{"quality_controlled":"1","doi":"10.1016/j.tcs.2013.01.030","language":[{"iso":"eng"}],"publication_identifier":{"issn":["0304-3975"]},"month":"03","year":"2013","publisher":"Elsevier","publication_status":"published","related_material":{"record":[{"id":"11799","relation":"earlier_version","status":"public"}]},"author":[{"last_name":"Dütting","first_name":"Paul","full_name":"Dütting, Paul"},{"last_name":"Henzinger","first_name":"Monika H","orcid":"0000-0002-5008-6530","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","full_name":"Henzinger, Monika H"},{"first_name":"Ingmar","last_name":"Weber","full_name":"Weber, Ingmar"}],"volume":478,"date_created":"2022-08-17T11:11:04Z","date_updated":"2023-02-21T16:28:41Z","extern":"1","citation":{"ista":"Dütting P, Henzinger MH, Weber I. 2013. Bidder optimal assignments for general utilities. Theoretical Computer Science. 478(3), 22–32.","ieee":"P. Dütting, M. H. Henzinger, and I. Weber, “Bidder optimal assignments for general utilities,” Theoretical Computer Science, vol. 478, no. 3. Elsevier, pp. 22–32, 2013.","apa":"Dütting, P., Henzinger, M. H., & Weber, I. (2013). Bidder optimal assignments for general utilities. Theoretical Computer Science. Elsevier. https://doi.org/10.1016/j.tcs.2013.01.030","ama":"Dütting P, Henzinger MH, Weber I. Bidder optimal assignments for general utilities. Theoretical Computer Science. 2013;478(3):22-32. doi:10.1016/j.tcs.2013.01.030","chicago":"Dütting, Paul, Monika H Henzinger, and Ingmar Weber. “Bidder Optimal Assignments for General Utilities.” Theoretical Computer Science. Elsevier, 2013. https://doi.org/10.1016/j.tcs.2013.01.030.","mla":"Dütting, Paul, et al. “Bidder Optimal Assignments for General Utilities.” Theoretical Computer Science, vol. 478, no. 3, Elsevier, 2013, pp. 22–32, doi:10.1016/j.tcs.2013.01.030.","short":"P. Dütting, M.H. Henzinger, I. Weber, Theoretical Computer Science 478 (2013) 22–32."},"publication":"Theoretical Computer Science","page":"22-32","article_type":"original","date_published":"2013-03-25T00:00:00Z","scopus_import":"1","article_processing_charge":"No","day":"25","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"11902","intvolume":" 478","title":"Bidder optimal assignments for general utilities","status":"public","oa_version":"None","type":"journal_article","issue":"3","abstract":[{"text":"We study the problem of matching bidders to items where each bidder i has general, strictly monotonic utility functions ui,j(pj) expressing his utility of being matched to item j at price pj. For this setting we prove that a bidder optimal outcome always exists, even when the utility functions are non-linear and non-continuous. We give sufficient conditions under\r\nwhich every mechanism that finds a bidder optimal outcome is incentive compatible. We also give a mechanism that finds a bidder optimal outcome if the conditions for incentive compatibility are satisfied. The running time of this mechanism is exponential in the number of items, but polynomial in the number of bidders.","lang":"eng"}]},{"language":[{"iso":"eng"}],"date_published":"2013-09-23T00:00:00Z","doi":"10.1002/anie.201303528","page":"10241-10244","article_type":"letter_note","quality_controlled":"1","citation":{"chicago":"Pieber, Bartholomäus, Sabrina Teixeira Martinez, David Cantillo, and C. Oliver Kappe. “In Situ Generation of Diimide from Hydrazine and Oxygen: Continuous-Flow Transfer Hydrogenation of Olefins.” Angewandte Chemie International Edition. Wiley, 2013. https://doi.org/10.1002/anie.201303528.","mla":"Pieber, Bartholomäus, et al. “In Situ Generation of Diimide from Hydrazine and Oxygen: Continuous-Flow Transfer Hydrogenation of Olefins.” Angewandte Chemie International Edition, vol. 52, no. 39, Wiley, 2013, pp. 10241–44, doi:10.1002/anie.201303528.","short":"B. Pieber, S.T. Martinez, D. Cantillo, C.O. Kappe, Angewandte Chemie International Edition 52 (2013) 10241–10244.","ista":"Pieber B, Martinez ST, Cantillo D, Kappe CO. 2013. In situ generation of diimide from hydrazine and oxygen: Continuous-flow transfer hydrogenation of olefins. Angewandte Chemie International Edition. 52(39), 10241–10244.","apa":"Pieber, B., Martinez, S. T., Cantillo, D., & Kappe, C. O. (2013). In situ generation of diimide from hydrazine and oxygen: Continuous-flow transfer hydrogenation of olefins. Angewandte Chemie International Edition. Wiley. https://doi.org/10.1002/anie.201303528","ieee":"B. Pieber, S. T. Martinez, D. Cantillo, and C. O. Kappe, “In situ generation of diimide from hydrazine and oxygen: Continuous-flow transfer hydrogenation of olefins,” Angewandte Chemie International Edition, vol. 52, no. 39. Wiley, pp. 10241–10244, 2013.","ama":"Pieber B, Martinez ST, Cantillo D, Kappe CO. In situ generation of diimide from hydrazine and oxygen: Continuous-flow transfer hydrogenation of olefins. Angewandte Chemie International Edition. 2013;52(39):10241-10244. doi:10.1002/anie.201303528"},"publication":"Angewandte Chemie International Edition","article_processing_charge":"No","publication_identifier":{"issn":["1433-7851"],"eissn":["1521-3773"]},"month":"09","day":"23","scopus_import":"1","oa_version":"None","volume":52,"date_created":"2022-08-24T11:01:47Z","date_updated":"2023-02-21T10:09:21Z","author":[{"orcid":"0000-0001-8689-388X","id":"93e5e5b2-0da6-11ed-8a41-af589a024726","last_name":"Pieber","first_name":"Bartholomäus","full_name":"Pieber, Bartholomäus"},{"first_name":"Sabrina Teixeira","last_name":"Martinez","full_name":"Martinez, Sabrina Teixeira"},{"full_name":"Cantillo, David","last_name":"Cantillo","first_name":"David"},{"last_name":"Kappe","first_name":"C. Oliver","full_name":"Kappe, C. Oliver"}],"publisher":"Wiley","intvolume":" 52","status":"public","publication_status":"published","title":"In situ generation of diimide from hydrazine and oxygen: Continuous-flow transfer hydrogenation of olefins","_id":"11959","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2013","extern":"1","issue":"39","abstract":[{"lang":"eng","text":"No catalyst required! A highly efficient, catalyst-free process to generate diimide in situ from hydrazine monohydrate and molecular oxygen for the selective reduction of alkenes has been developed. The use of a gas–liquid segmented flow system allowed safe operating conditions and dramatically enhanced this atom-economical reaction, resulting in short processing times."}],"type":"journal_article"},{"month":"01","day":"21","article_processing_charge":"No","publication_identifier":{"issn":["1433-7851"],"eissn":["1521-3773"]},"scopus_import":"1","doi":"10.1002/anie.201204103","date_published":"2013-01-21T00:00:00Z","language":[{"iso":"eng"}],"publication":"Angewandte Chemie International Edition","citation":{"short":"C.O. Kappe, B. Pieber, D. Dallinger, Angewandte Chemie International Edition 52 (2013) 1088–1094.","mla":"Kappe, C. Oliver, et al. “Microwave Effects in Organic Synthesis: Myth or Reality?” Angewandte Chemie International Edition, vol. 52, no. 4, Wiley, 2013, pp. 1088–94, doi:10.1002/anie.201204103.","chicago":"Kappe, C. Oliver, Bartholomäus Pieber, and Doris Dallinger. “Microwave Effects in Organic Synthesis: Myth or Reality?” Angewandte Chemie International Edition. Wiley, 2013. https://doi.org/10.1002/anie.201204103.","ama":"Kappe CO, Pieber B, Dallinger D. Microwave effects in organic synthesis: Myth or reality? Angewandte Chemie International Edition. 2013;52(4):1088-1094. doi:10.1002/anie.201204103","apa":"Kappe, C. O., Pieber, B., & Dallinger, D. (2013). Microwave effects in organic synthesis: Myth or reality? Angewandte Chemie International Edition. Wiley. https://doi.org/10.1002/anie.201204103","ieee":"C. O. Kappe, B. Pieber, and D. Dallinger, “Microwave effects in organic synthesis: Myth or reality?,” Angewandte Chemie International Edition, vol. 52, no. 4. Wiley, pp. 1088–1094, 2013.","ista":"Kappe CO, Pieber B, Dallinger D. 2013. Microwave effects in organic synthesis: Myth or reality? Angewandte Chemie International Edition. 52(4), 1088–1094."},"quality_controlled":"1","article_type":"letter_note","page":"1088-1094","abstract":[{"lang":"eng","text":"It's not magic! The effects observed in microwave-irradiated chemical transformations can in most cases be rationalized by purely bulk thermal phenomena associated with rapid heating to elevated temperatures. As discussed in this Essay, the existence of so-called nonthermal or specific microwave effects is highly doubtful."}],"issue":"4","extern":"1","type":"journal_article","author":[{"last_name":"Kappe","first_name":"C. Oliver","full_name":"Kappe, C. Oliver"},{"orcid":"0000-0001-8689-388X","id":"93e5e5b2-0da6-11ed-8a41-af589a024726","last_name":"Pieber","first_name":"Bartholomäus","full_name":"Pieber, Bartholomäus"},{"full_name":"Dallinger, Doris","first_name":"Doris","last_name":"Dallinger"}],"date_updated":"2023-02-21T10:09:26Z","date_created":"2022-08-24T11:05:04Z","volume":52,"oa_version":"None","_id":"11960","year":"2013","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","title":"Microwave effects in organic synthesis: Myth or reality?","status":"public","intvolume":" 52","publisher":"Wiley"},{"language":[{"iso":"eng"}],"doi":"10.1039/c2gc36896j","date_published":"2013-02-01T00:00:00Z","article_type":"letter_note","quality_controlled":"1","page":"320-324","publication":"Green Chemistry","citation":{"mla":"Pieber, Bartholomäus, and C. Oliver Kappe. “Direct Aerobic Oxidation of 2-Benzylpyridines in a Gas-Liquid Continuous-Flow Regime Using Propylene Carbonate as a Solvent.” Green Chemistry, vol. 15, no. 2, Royal Society of Chemistry, 2013, pp. 320–24, doi:10.1039/c2gc36896j.","short":"B. Pieber, C.O. Kappe, Green Chemistry 15 (2013) 320–324.","chicago":"Pieber, Bartholomäus, and C. Oliver Kappe. “Direct Aerobic Oxidation of 2-Benzylpyridines in a Gas-Liquid Continuous-Flow Regime Using Propylene Carbonate as a Solvent.” Green Chemistry. Royal Society of Chemistry, 2013. https://doi.org/10.1039/c2gc36896j.","ama":"Pieber B, Kappe CO. Direct aerobic oxidation of 2-benzylpyridines in a gas-liquid continuous-flow regime using propylene carbonate as a solvent. Green Chemistry. 2013;15(2):320-324. doi:10.1039/c2gc36896j","ista":"Pieber B, Kappe CO. 2013. Direct aerobic oxidation of 2-benzylpyridines in a gas-liquid continuous-flow regime using propylene carbonate as a solvent. Green Chemistry. 15(2), 320–324.","ieee":"B. Pieber and C. O. Kappe, “Direct aerobic oxidation of 2-benzylpyridines in a gas-liquid continuous-flow regime using propylene carbonate as a solvent,” Green Chemistry, vol. 15, no. 2. Royal Society of Chemistry, pp. 320–324, 2013.","apa":"Pieber, B., & Kappe, C. O. (2013). Direct aerobic oxidation of 2-benzylpyridines in a gas-liquid continuous-flow regime using propylene carbonate as a solvent. Green Chemistry. Royal Society of Chemistry. https://doi.org/10.1039/c2gc36896j"},"day":"01","month":"02","publication_identifier":{"issn":["1463-9262"],"eissn":["1463-9270"]},"article_processing_charge":"No","scopus_import":"1","date_created":"2022-08-25T10:29:21Z","date_updated":"2023-02-21T10:09:54Z","oa_version":"None","volume":15,"author":[{"full_name":"Pieber, Bartholomäus","id":"93e5e5b2-0da6-11ed-8a41-af589a024726","orcid":"0000-0001-8689-388X","first_name":"Bartholomäus","last_name":"Pieber"},{"first_name":"C. Oliver","last_name":"Kappe","full_name":"Kappe, C. Oliver"}],"status":"public","publication_status":"published","title":"Direct aerobic oxidation of 2-benzylpyridines in a gas-liquid continuous-flow regime using propylene carbonate as a solvent","publisher":"Royal Society of Chemistry","intvolume":" 15","_id":"11973","year":"2013","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","abstract":[{"text":"The use of high-temperature/pressure gas–liquid continuous flow conditions dramatically enhances the iron-catalyzed aerobic oxidation of 2-benzylpyridines to their corresponding ketones. Pressurized air serves as a readily available oxygen source and propylene carbonate as a green solvent in this radically intensified preparation of synthetically valuable 2-aroylpyridines.","lang":"eng"}],"issue":"2","type":"journal_article"},{"quality_controlled":"1","oa":1,"main_file_link":[{"url":"https://doi.org/10.3189/2013aog63a477","open_access":"1"}],"language":[{"iso":"eng"}],"doi":"10.3189/2013aog63a477","month":"08","publication_identifier":{"issn":["0260-3055"],"eissn":["1727-5644"]},"publication_status":"published","publisher":"International Glaciological Society","year":"2013","date_updated":"2023-02-21T10:18:24Z","date_created":"2023-02-20T08:17:29Z","volume":54,"author":[{"first_name":"Lene","last_name":"Petersen","full_name":"Petersen, Lene"},{"full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","first_name":"Francesca","last_name":"Pellicciotti"},{"first_name":"Inge","last_name":"Juszak","full_name":"Juszak, Inge"},{"full_name":"Carenzo, Marco","last_name":"Carenzo","first_name":"Marco"},{"first_name":"Ben","last_name":"Brock","full_name":"Brock, Ben"}],"extern":"1","article_type":"original","page":"120-130","publication":"Annals of Glaciology","citation":{"ama":"Petersen L, Pellicciotti F, Juszak I, Carenzo M, Brock B. Suitability of a constant air temperature lapse rate over an Alpine glacier: Testing the Greuell and Böhm model as an alternative. Annals of Glaciology. 2013;54(63):120-130. doi:10.3189/2013aog63a477","ista":"Petersen L, Pellicciotti F, Juszak I, Carenzo M, Brock B. 2013. Suitability of a constant air temperature lapse rate over an Alpine glacier: Testing the Greuell and Böhm model as an alternative. Annals of Glaciology. 54(63), 120–130.","ieee":"L. Petersen, F. Pellicciotti, I. Juszak, M. Carenzo, and B. Brock, “Suitability of a constant air temperature lapse rate over an Alpine glacier: Testing the Greuell and Böhm model as an alternative,” Annals of Glaciology, vol. 54, no. 63. International Glaciological Society, pp. 120–130, 2013.","apa":"Petersen, L., Pellicciotti, F., Juszak, I., Carenzo, M., & Brock, B. (2013). Suitability of a constant air temperature lapse rate over an Alpine glacier: Testing the Greuell and Böhm model as an alternative. Annals of Glaciology. International Glaciological Society. https://doi.org/10.3189/2013aog63a477","mla":"Petersen, Lene, et al. “Suitability of a Constant Air Temperature Lapse Rate over an Alpine Glacier: Testing the Greuell and Böhm Model as an Alternative.” Annals of Glaciology, vol. 54, no. 63, International Glaciological Society, 2013, pp. 120–30, doi:10.3189/2013aog63a477.","short":"L. Petersen, F. Pellicciotti, I. Juszak, M. Carenzo, B. Brock, Annals of Glaciology 54 (2013) 120–130.","chicago":"Petersen, Lene, Francesca Pellicciotti, Inge Juszak, Marco Carenzo, and Ben Brock. “Suitability of a Constant Air Temperature Lapse Rate over an Alpine Glacier: Testing the Greuell and Böhm Model as an Alternative.” Annals of Glaciology. International Glaciological Society, 2013. https://doi.org/10.3189/2013aog63a477."},"date_published":"2013-08-01T00:00:00Z","keyword":["Earth-Surface Processes"],"scopus_import":"1","day":"01","article_processing_charge":"No","title":"Suitability of a constant air temperature lapse rate over an Alpine glacier: Testing the Greuell and Böhm model as an alternative","status":"public","intvolume":" 54","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12642","oa_version":"Published Version","type":"journal_article","abstract":[{"text":"Near-surface air temperature, typically measured at a height of 2 m, is the most important control on the energy exchange and the melt rate at a snow or ice surface. It is distributed in a simplistic manner in most glacier melt models by using constant linear lapse rates, which poorly represent the actual spatial and temporal variability of air temperature. In this paper, we test a simple thermodynamic model proposed by Greuell and Böhm in 1998 as an alternative, using a new dataset of air temperature measurements from along the flowline of Haut Glacier d’Arolla, Switzerland. The unmodified model performs little better than assuming a constant linear lapse rate. When modified to allow the ratio of the boundary layer height to the bulk heat transfer coefficient to vary along the flowline, the model matches measured air temperatures better, and a further reduction of the root-mean-square error is obtained, although there is still considerable scope for improvement. The modified model is shown to perform best under conditions favourable to the development of katabatic winds – few clouds, positive ambient air temperature, limited influence of synoptic or valley winds and a long fetch – but its performance is poor under cloudy conditions.","lang":"eng"}],"issue":"63"},{"month":"04","publication_identifier":{"issn":["2169-897X"]},"doi":"10.1002/jgrd.50277","language":[{"iso":"eng"}],"oa":1,"main_file_link":[{"url":"https://doi.org/10.1002/jgrd.50277","open_access":"1"}],"quality_controlled":"1","extern":"1","author":[{"first_name":"I.","last_name":"Juszak","full_name":"Juszak, I."},{"full_name":"Pellicciotti, Francesca","last_name":"Pellicciotti","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"}],"date_updated":"2023-02-21T10:10:46Z","date_created":"2023-02-20T08:17:34Z","volume":118,"year":"2013","publication_status":"published","publisher":"American Geophysical Union","day":"27","article_processing_charge":"No","scopus_import":"1","keyword":["Space and Planetary Science","Earth and Planetary Sciences (miscellaneous)","Atmospheric Science","Geophysics"],"date_published":"2013-04-27T00:00:00Z","publication":"Journal of Geophysical Research: Atmospheres","citation":{"short":"I. Juszak, F. Pellicciotti, Journal of Geophysical Research: Atmospheres 118 (2013) 3066–3084.","mla":"Juszak, I., and Francesca Pellicciotti. “A Comparison of Parameterizations of Incoming Longwave Radiation over Melting Glaciers: Model Robustness and Seasonal Variability.” Journal of Geophysical Research: Atmospheres, vol. 118, no. 8, American Geophysical Union, 2013, pp. 3066–84, doi:10.1002/jgrd.50277.","chicago":"Juszak, I., and Francesca Pellicciotti. “A Comparison of Parameterizations of Incoming Longwave Radiation over Melting Glaciers: Model Robustness and Seasonal Variability.” Journal of Geophysical Research: Atmospheres. American Geophysical Union, 2013. https://doi.org/10.1002/jgrd.50277.","ama":"Juszak I, Pellicciotti F. A comparison of parameterizations of incoming longwave radiation over melting glaciers: Model robustness and seasonal variability. Journal of Geophysical Research: Atmospheres. 2013;118(8):3066-3084. doi:10.1002/jgrd.50277","apa":"Juszak, I., & Pellicciotti, F. (2013). A comparison of parameterizations of incoming longwave radiation over melting glaciers: Model robustness and seasonal variability. Journal of Geophysical Research: Atmospheres. American Geophysical Union. https://doi.org/10.1002/jgrd.50277","ieee":"I. Juszak and F. Pellicciotti, “A comparison of parameterizations of incoming longwave radiation over melting glaciers: Model robustness and seasonal variability,” Journal of Geophysical Research: Atmospheres, vol. 118, no. 8. American Geophysical Union, pp. 3066–3084, 2013.","ista":"Juszak I, Pellicciotti F. 2013. A comparison of parameterizations of incoming longwave radiation over melting glaciers: Model robustness and seasonal variability. Journal of Geophysical Research: Atmospheres. 118(8), 3066–3084."},"article_type":"original","page":"3066-3084","abstract":[{"lang":"eng","text":"Parameterizations of incoming longwave radiation are increasingly receiving attention for both low and high elevation glacierized sites. In this paper, we test 13 clear-sky parameterizations combined with seven cloud corrections for all-sky atmospheric emissivity at one location on Haut Glacier d'Arolla. We also analyze the four seasons separately and conduct a cross-validation to test the parameters’ robustness. The best parameterization is the one by Dilley and O'Brien, B for clear-sky conditions combined with Unsworth and Monteith cloud correction. This model is also the most robust when tested in cross-validation. When validated at different sites in the southern Alps of Switzerland and north-western Italian Alps, all parameterizations show a substantial decrease in performance, except for one site, thus suggesting that it is important to recalibrate parameterizations of incoming longwave radiation for different locations. We argue that this is due to differences in the structure of the atmosphere at the sites. We also quantify the effect that the incoming longwave radiation parameterizations have on energy-balance melt modeling, and show that recalibration of model parameters is needed. Using parameters from other sites leads to a significant underestimation of melt and to an error that is larger than that associated with using different parameterizations. Once recalibrated, however, the parameters of most models seem to be stable over seasons and years at the location on Haut Glacier d'Arolla."}],"issue":"8","type":"journal_article","oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12643","status":"public","title":"A comparison of parameterizations of incoming longwave radiation over melting glaciers: Model robustness and seasonal variability","intvolume":" 118"},{"oa_version":"None","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12640","title":"Rising river flows throughout the twenty-first century in two Himalayan glacierized watersheds","status":"public","intvolume":" 6","abstract":[{"text":"Greater Himalayan glaciers are retreating and losing mass at rates comparable to glaciers in other regions of the world1,2,3,4,5. Assessments of future changes and their associated hydrological impacts are scarce, oversimplify glacier dynamics or include a limited number of climate models6,7,8,9. Here, we use results from the latest ensemble of climate models in combination with a high-resolution glacio-hydrological model to assess the hydrological impact of climate change on two climatically contrasting watersheds in the Greater Himalaya, the Baltoro and Langtang watersheds that drain into the Indus and Ganges rivers, respectively. We show that the largest uncertainty in future runoff is a result of variations in projected precipitation between climate models. In both watersheds, strong, but highly variable, increases in future runoff are projected and, despite the different characteristics of the watersheds, their responses are surprisingly similar. In both cases, glaciers will recede but net glacier melt runoff is on a rising limb at least until 2050. In combination with a positive change in precipitation, water availability during this century is not likely to decline. We conclude that river basins that depend on monsoon rains and glacier melt will continue to sustain the increasing water demands expected in these areas10.","lang":"eng"}],"issue":"9","type":"journal_article","date_published":"2013-09-13T00:00:00Z","publication":"Nature Geoscience","citation":{"ieee":"W. W. Immerzeel, F. Pellicciotti, and M. F. P. Bierkens, “Rising river flows throughout the twenty-first century in two Himalayan glacierized watersheds,” Nature Geoscience, vol. 6, no. 9. Springer Nature, pp. 742–745, 2013.","apa":"Immerzeel, W. W., Pellicciotti, F., & Bierkens, M. F. P. (2013). Rising river flows throughout the twenty-first century in two Himalayan glacierized watersheds. Nature Geoscience. Springer Nature. https://doi.org/10.1038/ngeo1896","ista":"Immerzeel WW, Pellicciotti F, Bierkens MFP. 2013. Rising river flows throughout the twenty-first century in two Himalayan glacierized watersheds. Nature Geoscience. 6(9), 742–745.","ama":"Immerzeel WW, Pellicciotti F, Bierkens MFP. Rising river flows throughout the twenty-first century in two Himalayan glacierized watersheds. Nature Geoscience. 2013;6(9):742-745. doi:10.1038/ngeo1896","chicago":"Immerzeel, W. W., Francesca Pellicciotti, and M. F. P. Bierkens. “Rising River Flows throughout the Twenty-First Century in Two Himalayan Glacierized Watersheds.” Nature Geoscience. Springer Nature, 2013. https://doi.org/10.1038/ngeo1896.","short":"W.W. Immerzeel, F. Pellicciotti, M.F.P. Bierkens, Nature Geoscience 6 (2013) 742–745.","mla":"Immerzeel, W. W., et al. “Rising River Flows throughout the Twenty-First Century in Two Himalayan Glacierized Watersheds.” Nature Geoscience, vol. 6, no. 9, Springer Nature, 2013, pp. 742–45, doi:10.1038/ngeo1896."},"article_type":"letter_note","page":"742-745","day":"13","article_processing_charge":"No","scopus_import":"1","keyword":["General Earth and Planetary Sciences"],"author":[{"full_name":"Immerzeel, W. W.","first_name":"W. W.","last_name":"Immerzeel"},{"full_name":"Pellicciotti, Francesca","first_name":"Francesca","last_name":"Pellicciotti","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"},{"first_name":"M. F. P.","last_name":"Bierkens","full_name":"Bierkens, M. F. P."}],"date_updated":"2023-02-21T10:46:37Z","date_created":"2023-02-20T08:17:17Z","volume":6,"year":"2013","publication_status":"published","publisher":"Springer Nature","extern":"1","doi":"10.1038/ngeo1896","language":[{"iso":"eng"}],"quality_controlled":"1","month":"09","publication_identifier":{"issn":["1752-0894"],"eissn":["1752-0908"]}},{"extern":"1","publisher":"International Glaciological Society","publication_status":"published","year":"2013","volume":54,"date_updated":"2023-02-21T10:43:42Z","date_created":"2023-02-20T08:17:21Z","author":[{"full_name":"Heynen, Martin","last_name":"Heynen","first_name":"Martin"},{"id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","first_name":"Francesca","last_name":"Pellicciotti","full_name":"Pellicciotti, Francesca"},{"last_name":"Carenzo","first_name":"Marco","full_name":"Carenzo, Marco"}],"publication_identifier":{"eissn":["1727-5644"],"issn":["0260-3055"]},"month":"08","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.3189/2013aog63a537"}],"oa":1,"language":[{"iso":"eng"}],"doi":"10.3189/2013aog63a537","type":"journal_article","issue":"63","abstract":[{"lang":"eng","text":"We investigate the sensitivity of a distributed enhanced temperature-index (ETI) melt model, in order to understand which parameters have the largest influence on model outputs and thus need to be accurately known. We use melt and meteorological data from two Alpine glaciers and one glacier in the Andes of Chile. Sensitivity analysis is conducted in a systematic way in terms of parameters and the different conditions (day, night, clear-sky, overcast), melt seasons and glaciers examined. The sensitivity of total melt to changes in individual parameters is calculated using a local method around the optimal value of the parameters. We verify that the parameters are optimal at the distributed scale and assess the model uncertainty induced by uncertainty in the parameters using a Monte Carlo technique. Model sensitivity to parameters is consistent across melt seasons, glaciers, different conditions and the daily statistics examined. The parameters to which the model is most sensitive are the shortwave-radiation factor, the temperature lapse rate for extrapolation of air temperature, the albedo parameters, the temperature threshold and the cloud transmittance factor parameters. A parameter uncertainty of 5% results in a model uncertainty of 5.6% of mean melt on Haut Glacier d’Arolla, Switzerland."}],"intvolume":" 54","status":"public","title":"Parameter sensitivity of a distributed enhanced temperature-index melt model","_id":"12641","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","scopus_import":"1","article_processing_charge":"No","day":"01","page":"311-321","article_type":"original","citation":{"short":"M. Heynen, F. Pellicciotti, M. Carenzo, Annals of Glaciology 54 (2013) 311–321.","mla":"Heynen, Martin, et al. “Parameter Sensitivity of a Distributed Enhanced Temperature-Index Melt Model.” Annals of Glaciology, vol. 54, no. 63, International Glaciological Society, 2013, pp. 311–21, doi:10.3189/2013aog63a537.","chicago":"Heynen, Martin, Francesca Pellicciotti, and Marco Carenzo. “Parameter Sensitivity of a Distributed Enhanced Temperature-Index Melt Model.” Annals of Glaciology. International Glaciological Society, 2013. https://doi.org/10.3189/2013aog63a537.","ama":"Heynen M, Pellicciotti F, Carenzo M. Parameter sensitivity of a distributed enhanced temperature-index melt model. Annals of Glaciology. 2013;54(63):311-321. doi:10.3189/2013aog63a537","ieee":"M. Heynen, F. Pellicciotti, and M. Carenzo, “Parameter sensitivity of a distributed enhanced temperature-index melt model,” Annals of Glaciology, vol. 54, no. 63. International Glaciological Society, pp. 311–321, 2013.","apa":"Heynen, M., Pellicciotti, F., & Carenzo, M. (2013). Parameter sensitivity of a distributed enhanced temperature-index melt model. Annals of Glaciology. International Glaciological Society. https://doi.org/10.3189/2013aog63a537","ista":"Heynen M, Pellicciotti F, Carenzo M. 2013. Parameter sensitivity of a distributed enhanced temperature-index melt model. Annals of Glaciology. 54(63), 311–321."},"publication":"Annals of Glaciology","date_published":"2013-08-01T00:00:00Z"},{"publist_id":"5967","issue":"34","abstract":[{"text":"When confronted with a large-field stimulus rotating around the vertical body axis, flies display a following behavior called "optomotor response." As neural control elements, the large tangential horizontal system (HS) cells of the lobula plate have been prime candidates for long. Here, we applied optogenetic stimulation of HS cells to evaluate their behavioral role in Drosophila. To minimize interference of the optical activation of channelrhodopsin-2 with the visual perception of the flies, we used a bistable variant called ChR2-C128S. By applying pulses of blue and yellow light, we first demonstrate electrophysiologically that lobula plate tangential cells can be activated and deactivated repeatedly with no evident change in depolarization strength over trials. We next show that selective optogenetic activation of HS cells elicits robust yaw head movements and yaw turning responses in fixed and tethered flying flies, respectively.","lang":"eng"}],"extern":1,"type":"journal_article","author":[{"last_name":"Haikala","first_name":"Väinö","full_name":"Haikala, Väinö"},{"full_name":"Maximilian Jösch","orcid":"0000-0002-3937-1330","id":"2BD278E6-F248-11E8-B48F-1D18A9856A87","last_name":"Jösch","first_name":"Maximilian A"},{"full_name":"Borst, Alexander","first_name":"Alexander","last_name":"Borst"},{"full_name":"Mauss, Alex S","first_name":"Alex","last_name":"Mauss"}],"volume":33,"date_updated":"2021-01-12T06:49:45Z","date_created":"2018-12-11T11:51:16Z","_id":"1304","year":"2013","acknowledgement":"This work was supported by the Max Planck Society. ","intvolume":" 33","publisher":"Society for Neuroscience","title":"Optogenetic control of fly optomotor responses","status":"public","publication_status":"published","month":"01","day":"01","doi":"10.1523/JNEUROSCI.0340-13.2013","date_published":"2013-01-01T00:00:00Z","citation":{"ieee":"V. Haikala, M. A. Jösch, A. Borst, and A. Mauss, “Optogenetic control of fly optomotor responses,” Journal of Neuroscience, vol. 33, no. 34. Society for Neuroscience, pp. 13927–13934, 2013.","apa":"Haikala, V., Jösch, M. A., Borst, A., & Mauss, A. (2013). Optogenetic control of fly optomotor responses. Journal of Neuroscience. Society for Neuroscience. https://doi.org/10.1523/JNEUROSCI.0340-13.2013","ista":"Haikala V, Jösch MA, Borst A, Mauss A. 2013. Optogenetic control of fly optomotor responses. Journal of Neuroscience. 33(34), 13927–13934.","ama":"Haikala V, Jösch MA, Borst A, Mauss A. Optogenetic control of fly optomotor responses. Journal of Neuroscience. 2013;33(34):13927-13934. doi:10.1523/JNEUROSCI.0340-13.2013","chicago":"Haikala, Väinö, Maximilian A Jösch, Alexander Borst, and Alex Mauss. “Optogenetic Control of Fly Optomotor Responses.” Journal of Neuroscience. Society for Neuroscience, 2013. https://doi.org/10.1523/JNEUROSCI.0340-13.2013.","short":"V. Haikala, M.A. Jösch, A. Borst, A. Mauss, Journal of Neuroscience 33 (2013) 13927–13934.","mla":"Haikala, Väinö, et al. “Optogenetic Control of Fly Optomotor Responses.” Journal of Neuroscience, vol. 33, no. 34, Society for Neuroscience, 2013, pp. 13927–34, doi:10.1523/JNEUROSCI.0340-13.2013."},"publication":"Journal of Neuroscience","page":"13927 - 13934","quality_controlled":0},{"_id":"1305","year":"2013","acknowledgement":"This work was supported by the Max-Planck-Society and the SFB 870 of the Deutsche Forschungsgemeinschaft.","status":"public","title":"Functional specialization of parallel motion detection circuits in the fly","publication_status":"published","intvolume":" 33","publisher":"Society for Neuroscience","author":[{"full_name":"Maximilian Jösch","orcid":"0000-0002-3937-1330","id":"2BD278E6-F248-11E8-B48F-1D18A9856A87","last_name":"Jösch","first_name":"Maximilian A"},{"full_name":"Weber, Franz","first_name":"Franz","last_name":"Weber"},{"full_name":"Eichner, Hubert","first_name":"Hubert","last_name":"Eichner"},{"first_name":"Alexander","last_name":"Borst","full_name":"Borst, Alexander"}],"date_created":"2018-12-11T11:51:16Z","date_updated":"2021-01-12T06:49:45Z","volume":33,"type":"journal_article","abstract":[{"lang":"eng","text":"In the fly Drosophila melanogaster, photoreceptor input to motion vision is split into two parallel pathways as represented by first-order interneurons L1 and L2 (Rister et al., 2007; Joesch et al., 2010). However, how these pathways are functionally specialized remains controversial. One study (Eichner et al., 2011) proposed that the L1-pathway evaluates only sequences of brightness increments (ON-ON), while the L2-pathway processes exclusively brightness decrements (OFF-OFF). Another study (Clark et al., 2011) proposed that each of the two pathways evaluates both ON-ON and OFF-OFF sequences. To decide between these alternatives, we recorded from motionsensitive neurons in flies in which the output from either L1 or L2 was genetically blocked. We found that blocking L1 abolishes ON-ON responses but leaves OFF-OFF responses intact. The opposite was true, when the output from L2 was blocked. We conclude that the L1 and L2 pathways are functionally specialized to detect ON-ON and OFF-OFF sequences, respectively."}],"publist_id":"5968","issue":"3","extern":1,"publication":"Journal of Neuroscience","citation":{"short":"M.A. Jösch, F. Weber, H. Eichner, A. Borst, Journal of Neuroscience 33 (2013) 902–905.","mla":"Jösch, Maximilian A., et al. “Functional Specialization of Parallel Motion Detection Circuits in the Fly.” Journal of Neuroscience, vol. 33, no. 3, Society for Neuroscience, 2013, pp. 902–05, doi:10.1523/JNEUROSCI.3374-12.2013.","chicago":"Jösch, Maximilian A, Franz Weber, Hubert Eichner, and Alexander Borst. “Functional Specialization of Parallel Motion Detection Circuits in the Fly.” Journal of Neuroscience. Society for Neuroscience, 2013. https://doi.org/10.1523/JNEUROSCI.3374-12.2013.","ama":"Jösch MA, Weber F, Eichner H, Borst A. Functional specialization of parallel motion detection circuits in the fly. Journal of Neuroscience. 2013;33(3):902-905. doi:10.1523/JNEUROSCI.3374-12.2013","ieee":"M. A. Jösch, F. Weber, H. Eichner, and A. Borst, “Functional specialization of parallel motion detection circuits in the fly,” Journal of Neuroscience, vol. 33, no. 3. Society for Neuroscience, pp. 902–905, 2013.","apa":"Jösch, M. A., Weber, F., Eichner, H., & Borst, A. (2013). Functional specialization of parallel motion detection circuits in the fly. Journal of Neuroscience. Society for Neuroscience. https://doi.org/10.1523/JNEUROSCI.3374-12.2013","ista":"Jösch MA, Weber F, Eichner H, Borst A. 2013. Functional specialization of parallel motion detection circuits in the fly. Journal of Neuroscience. 33(3), 902–905."},"quality_controlled":0,"page":"902 - 905","doi":"10.1523/JNEUROSCI.3374-12.2013","date_published":"2013-01-16T00:00:00Z","day":"16","month":"01"},{"day":"01","month":"01","quality_controlled":0,"page":"1585 - 1615","publication":"SIAM Journal on Mathematical Analysis","citation":{"ista":"Fischer JL. 2013. Advection-driven support shrinking in a chemotaxis model with degenerate mobility. SIAM Journal on Mathematical Analysis. 45(3), 1585–1615.","ieee":"J. L. Fischer, “Advection-driven support shrinking in a chemotaxis model with degenerate mobility,” SIAM Journal on Mathematical Analysis, vol. 45, no. 3. Society for Industrial and Applied Mathematics , pp. 1585–1615, 2013.","apa":"Fischer, J. L. (2013). Advection-driven support shrinking in a chemotaxis model with degenerate mobility. SIAM Journal on Mathematical Analysis. Society for Industrial and Applied Mathematics . https://doi.org/10.1137/120874291","ama":"Fischer JL. Advection-driven support shrinking in a chemotaxis model with degenerate mobility. SIAM Journal on Mathematical Analysis. 2013;45(3):1585-1615. doi:10.1137/120874291","chicago":"Fischer, Julian L. “Advection-Driven Support Shrinking in a Chemotaxis Model with Degenerate Mobility.” SIAM Journal on Mathematical Analysis. Society for Industrial and Applied Mathematics , 2013. https://doi.org/10.1137/120874291.","mla":"Fischer, Julian L. “Advection-Driven Support Shrinking in a Chemotaxis Model with Degenerate Mobility.” SIAM Journal on Mathematical Analysis, vol. 45, no. 3, Society for Industrial and Applied Mathematics , 2013, pp. 1585–615, doi:10.1137/120874291.","short":"J.L. Fischer, SIAM Journal on Mathematical Analysis 45 (2013) 1585–1615."},"date_published":"2013-01-01T00:00:00Z","doi":"10.1137/120874291","type":"journal_article","extern":1,"abstract":[{"text":"We derive sufficient conditions for advection-driven backward motion of the free boundary in a chemotaxis model with degenerate mobility. In this model, a porous-medium-type diffusive term and an advection term are in competition. The former induces forward motion, the latter may induce backward motion of the free boundary depending on the direction of advection. We deduce conditions on the growth of the initial data at the free boundary which ensure that at least initially the advection term is dominant. This implies local backward motion of the free boundary provided the advection is (locally) directed appropriately. Our result is based on a new class of moving test functions and Stampacchia's lemma. As a by-product of our estimates, we obtain quantitative bounds on the spreading of the support of solutions for the chemotaxis model and provide a proof for the finite speed of the support propagation property of solutions.","lang":"eng"}],"issue":"3","publist_id":"5963","status":"public","publication_status":"published","title":"Advection-driven support shrinking in a chemotaxis model with degenerate mobility","publisher":"Society for Industrial and Applied Mathematics ","intvolume":" 45","year":"2013","_id":"1308","date_created":"2018-12-11T11:51:17Z","date_updated":"2021-01-12T06:49:46Z","volume":45,"author":[{"id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0479-558X","first_name":"Julian L","last_name":"Fischer","full_name":"Julian Fischer"}]},{"issue":"11","publist_id":"5962","abstract":[{"text":"We prove uniqueness of solutions of the DLSS equation in a class of sufficiently regular functions. The global weak solutions of the DLSS equation constructed by Jüngel and Matthes belong to this class of uniqueness. We also show uniqueness of solutions for the quantum drift-diffusion equation, which contains additional drift and second-order diffusion terms. The results hold in case of periodic or Dirichlet-Neumann boundary conditions. Our proof is based on a monotonicity property of the DLSS operator and sophisticated approximation arguments; we derive a PDE satisfied by the pointwise square root of the solution, which enables us to exploit the monotonicity property of the operator.","lang":"eng"}],"extern":1,"type":"journal_article","author":[{"orcid":"0000-0002-0479-558X","id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87","last_name":"Fischer","first_name":"Julian L","full_name":"Julian Fischer"}],"volume":38,"date_created":"2018-12-11T11:51:17Z","date_updated":"2021-01-12T06:49:46Z","_id":"1307","year":"2013","publisher":"Taylor & Francis","intvolume":" 38","publication_status":"published","status":"public","title":"Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models","month":"11","day":"01","date_published":"2013-11-01T00:00:00Z","doi":"10.1080/03605302.2013.823548","citation":{"ista":"Fischer JL. 2013. Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models. Communications in Partial Differential Equations. 38(11), 2004–2047.","apa":"Fischer, J. L. (2013). Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models. Communications in Partial Differential Equations. Taylor & Francis. https://doi.org/10.1080/03605302.2013.823548","ieee":"J. L. Fischer, “Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models,” Communications in Partial Differential Equations, vol. 38, no. 11. Taylor & Francis, pp. 2004–2047, 2013.","ama":"Fischer JL. Uniqueness of solutions of the Derrida-Lebowitz-Speer-Spohn equation and quantum drift diffusion models. Communications in Partial Differential Equations. 2013;38(11):2004-2047. doi:10.1080/03605302.2013.823548","chicago":"Fischer, Julian L. “Uniqueness of Solutions of the Derrida-Lebowitz-Speer-Spohn Equation and Quantum Drift Diffusion Models.” Communications in Partial Differential Equations. Taylor & Francis, 2013. https://doi.org/10.1080/03605302.2013.823548.","mla":"Fischer, Julian L. “Uniqueness of Solutions of the Derrida-Lebowitz-Speer-Spohn Equation and Quantum Drift Diffusion Models.” Communications in Partial Differential Equations, vol. 38, no. 11, Taylor & Francis, 2013, pp. 2004–47, doi:10.1080/03605302.2013.823548.","short":"J.L. Fischer, Communications in Partial Differential Equations 38 (2013) 2004–2047."},"publication":"Communications in Partial Differential Equations","page":"2004 - 2047","quality_controlled":0},{"type":"journal_article","extern":1,"abstract":[{"lang":"eng","text":"We derive lower bounds on asymptotic support propagation rates for strong solutions of the Cauchy problem for the thin-film equation. The bounds coincide up to a constant factor with the previously known upper bounds and thus are sharp. Our results hold in case of at most three spatial dimensions and n∈. (1, 2.92). The result is established using weighted backward entropy inequalities with singular weight functions to yield a differential inequality; combined with some entropy production estimates, the optimal rate of propagation is obtained. To the best of our knowledge, these are the first lower bounds on asymptotic support propagation rates for higher-order nonnegativity-preserving parabolic equations."}],"publist_id":"5961","issue":"10","title":"Optimal lower bounds on asymptotic support propagation rates for the thin-film equation","status":"public","publication_status":"published","intvolume":" 255","publisher":"Academic Press","year":"2013","_id":"1310","date_created":"2018-12-11T11:51:18Z","date_updated":"2021-01-12T06:49:47Z","volume":255,"author":[{"full_name":"Julian Fischer","last_name":"Fischer","first_name":"Julian L","orcid":"0000-0002-0479-558X","id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87"}],"month":"11","day":"15","quality_controlled":0,"page":"3127 - 3149","publication":"Journal of Differential Equations","citation":{"apa":"Fischer, J. L. (2013). Optimal lower bounds on asymptotic support propagation rates for the thin-film equation. Journal of Differential Equations. Academic Press. https://doi.org/10.1016/j.jde.2013.07.028","ieee":"J. L. Fischer, “Optimal lower bounds on asymptotic support propagation rates for the thin-film equation,” Journal of Differential Equations, vol. 255, no. 10. Academic Press, pp. 3127–3149, 2013.","ista":"Fischer JL. 2013. Optimal lower bounds on asymptotic support propagation rates for the thin-film equation. Journal of Differential Equations. 255(10), 3127–3149.","ama":"Fischer JL. Optimal lower bounds on asymptotic support propagation rates for the thin-film equation. Journal of Differential Equations. 2013;255(10):3127-3149. doi:10.1016/j.jde.2013.07.028","chicago":"Fischer, Julian L. “Optimal Lower Bounds on Asymptotic Support Propagation Rates for the Thin-Film Equation.” Journal of Differential Equations. Academic Press, 2013. https://doi.org/10.1016/j.jde.2013.07.028.","short":"J.L. Fischer, Journal of Differential Equations 255 (2013) 3127–3149.","mla":"Fischer, Julian L. “Optimal Lower Bounds on Asymptotic Support Propagation Rates for the Thin-Film Equation.” Journal of Differential Equations, vol. 255, no. 10, Academic Press, 2013, pp. 3127–49, doi:10.1016/j.jde.2013.07.028."},"date_published":"2013-11-15T00:00:00Z","doi":"10.1016/j.jde.2013.07.028"},{"file_date_updated":"2020-07-14T12:44:47Z","ec_funded":1,"publist_id":"5837","author":[{"full_name":"Chatterjee, Krishnendu","last_name":"Chatterjee","first_name":"Krishnendu","orcid":"0000-0002-4561-241X","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Fijalkow, Nathanaël","first_name":"Nathanaël","last_name":"Fijalkow"}],"date_created":"2018-12-11T11:51:39Z","date_updated":"2021-01-12T06:50:14Z","volume":23,"year":"2013","publication_status":"published","department":[{"_id":"KrCh"}],"publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","month":"09","conference":{"name":"CSL: Computer Science Logic","end_date":"2013-09-05","start_date":"203-09-02","location":"Torino, Italy"},"doi":"10.4230/LIPIcs.CSL.2013.181","language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"quality_controlled":"1","project":[{"grant_number":"P 23499-N23","_id":"2584A770-B435-11E9-9278-68D0E5697425","name":"Modern Graph Algorithmic Techniques in Formal Verification","call_identifier":"FWF"},{"_id":"25863FF4-B435-11E9-9278-68D0E5697425","grant_number":"S11407","name":"Game Theory","call_identifier":"FWF"},{"name":"Quantitative Graph Games: Theory and Applications","call_identifier":"FP7","grant_number":"279307","_id":"2581B60A-B435-11E9-9278-68D0E5697425"},{"_id":"2587B514-B435-11E9-9278-68D0E5697425","name":"Microsoft Research Faculty Fellowship"}],"abstract":[{"lang":"eng","text":"We study two-player zero-sum games over infinite-state graphs equipped with ωB and finitary conditions. Our first contribution is about the strategy complexity, i.e the memory required for winning strategies: we prove that over general infinite-state graphs, memoryless strategies are sufficient for finitary Büchi, and finite-memory suffices for finitary parity games. We then study pushdown games with boundedness conditions, with two contributions. First we prove a collapse result for pushdown games with ωB-conditions, implying the decidability of solving these games. Second we consider pushdown games with finitary parity along with stack boundedness conditions, and show that solving these games is EXPTIME-complete."}],"type":"conference","alternative_title":["LIPIcs"],"pubrep_id":"624","file":[{"access_level":"open_access","file_name":"IST-2016-624-v1+1_ChKr_Infinite-state_games_2013_17.pdf","content_type":"application/pdf","file_size":547296,"creator":"system","relation":"main_file","file_id":"5023","checksum":"b7091a3866db573c0db5ec486952255e","date_created":"2018-12-12T10:13:38Z","date_updated":"2020-07-14T12:44:47Z"}],"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"1374","title":"Infinite-state games with finitary conditions","status":"public","ddc":["000"],"intvolume":" 23","day":"01","has_accepted_license":"1","scopus_import":1,"series_title":"Leibniz International Proceedings in Informatics","date_published":"2013-09-01T00:00:00Z","publication":"22nd EACSL Annual Conference on Computer Science Logic","citation":{"ama":"Chatterjee K, Fijalkow N. Infinite-state games with finitary conditions. In: 22nd EACSL Annual Conference on Computer Science Logic. Vol 23. Leibniz International Proceedings in Informatics. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2013:181-196. doi:10.4230/LIPIcs.CSL.2013.181","apa":"Chatterjee, K., & Fijalkow, N. (2013). Infinite-state games with finitary conditions. In 22nd EACSL Annual Conference on Computer Science Logic (Vol. 23, pp. 181–196). Torino, Italy: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.CSL.2013.181","ieee":"K. Chatterjee and N. Fijalkow, “Infinite-state games with finitary conditions,” in 22nd EACSL Annual Conference on Computer Science Logic, Torino, Italy, 2013, vol. 23, pp. 181–196.","ista":"Chatterjee K, Fijalkow N. 2013. Infinite-state games with finitary conditions. 22nd EACSL Annual Conference on Computer Science Logic. CSL: Computer Science LogicLeibniz International Proceedings in Informatics, LIPIcs, vol. 23, 181–196.","short":"K. Chatterjee, N. Fijalkow, in:, 22nd EACSL Annual Conference on Computer Science Logic, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013, pp. 181–196.","mla":"Chatterjee, Krishnendu, and Nathanaël Fijalkow. “Infinite-State Games with Finitary Conditions.” 22nd EACSL Annual Conference on Computer Science Logic, vol. 23, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013, pp. 181–96, doi:10.4230/LIPIcs.CSL.2013.181.","chicago":"Chatterjee, Krishnendu, and Nathanaël Fijalkow. “Infinite-State Games with Finitary Conditions.” In 22nd EACSL Annual Conference on Computer Science Logic, 23:181–96. Leibniz International Proceedings in Informatics. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2013. https://doi.org/10.4230/LIPIcs.CSL.2013.181."},"page":"181 - 196"},{"day":"11","page":"77 - 84","citation":{"apa":"Hofferek, G., Gupta, A., Könighofer, B., Jiang, J., & Bloem, R. (2013). Synthesizing multiple boolean functions using interpolation on a single proof. In 2013 Formal Methods in Computer-Aided Design (pp. 77–84). Portland, OR, United States: IEEE. https://doi.org/10.1109/FMCAD.2013.6679394","ieee":"G. Hofferek, A. Gupta, B. Könighofer, J. Jiang, and R. Bloem, “Synthesizing multiple boolean functions using interpolation on a single proof,” in 2013 Formal Methods in Computer-Aided Design, Portland, OR, United States, 2013, pp. 77–84.","ista":"Hofferek G, Gupta A, Könighofer B, Jiang J, Bloem R. 2013. Synthesizing multiple boolean functions using interpolation on a single proof. 2013 Formal Methods in Computer-Aided Design. FMCAD: Formal Methods in Computer-Aided Design, 77–84.","ama":"Hofferek G, Gupta A, Könighofer B, Jiang J, Bloem R. Synthesizing multiple boolean functions using interpolation on a single proof. In: 2013 Formal Methods in Computer-Aided Design. IEEE; 2013:77-84. doi:10.1109/FMCAD.2013.6679394","chicago":"Hofferek, Georg, Ashutosh Gupta, Bettina Könighofer, Jie Jiang, and Roderick Bloem. “Synthesizing Multiple Boolean Functions Using Interpolation on a Single Proof.” In 2013 Formal Methods in Computer-Aided Design, 77–84. IEEE, 2013. https://doi.org/10.1109/FMCAD.2013.6679394.","short":"G. Hofferek, A. Gupta, B. Könighofer, J. Jiang, R. Bloem, in:, 2013 Formal Methods in Computer-Aided Design, IEEE, 2013, pp. 77–84.","mla":"Hofferek, Georg, et al. “Synthesizing Multiple Boolean Functions Using Interpolation on a Single Proof.” 2013 Formal Methods in Computer-Aided Design, IEEE, 2013, pp. 77–84, doi:10.1109/FMCAD.2013.6679394."},"publication":"2013 Formal Methods in Computer-Aided Design","date_published":"2013-12-11T00:00:00Z","type":"conference","abstract":[{"text":"It is often difficult to correctly implement a Boolean controller for a complex system, especially when concurrency is involved. Yet, it may be easy to formally specify a controller. For instance, for a pipelined processor it suffices to state that the visible behavior of the pipelined system should be identical to a non-pipelined reference system (Burch-Dill paradigm). We present a novel procedure to efficiently synthesize multiple Boolean control signals from a specification given as a quantified first-order formula (with a specific quantifier structure). Our approach uses uninterpreted functions to abstract details of the design. We construct an unsatisfiable SMT formula from the given specification. Then, from just one proof of unsatisfiability, we use a variant of Craig interpolation to compute multiple coordinated interpolants that implement the Boolean control signals. Our method avoids iterative learning and back-substitution of the control functions. We applied our approach to synthesize a controller for a simple two-stage pipelined processor, and present first experimental results.","lang":"eng"}],"status":"public","title":"Synthesizing multiple boolean functions using interpolation on a single proof","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"1385","oa_version":"Preprint","month":"12","project":[{"_id":"25832EC2-B435-11E9-9278-68D0E5697425","grant_number":"S 11407_N23","call_identifier":"FWF","name":"Rigorous Systems Engineering"},{"call_identifier":"FP7","name":"Quantitative Reactive Modeling","grant_number":"267989","_id":"25EE3708-B435-11E9-9278-68D0E5697425"}],"quality_controlled":"1","external_id":{"arxiv":["1308.4767"]},"main_file_link":[{"url":"http://arxiv.org/abs/1308.4767","open_access":"1"}],"oa":1,"language":[{"iso":"eng"}],"doi":"10.1109/FMCAD.2013.6679394","conference":{"location":"Portland, OR, United States","start_date":"2013-10-20","end_date":"2013-10-23","name":"FMCAD: Formal Methods in Computer-Aided Design"},"publist_id":"5825","ec_funded":1,"publisher":"IEEE","department":[{"_id":"ToHe"}],"publication_status":"published","acknowledgement":"This research was supported by the European Commission through project\r\nDIAMOND (FP7-2009-IST-4-248613), and QUAINT (I774-N23), ","year":"2013","date_created":"2018-12-11T11:51:43Z","date_updated":"2021-01-12T06:50:19Z","author":[{"first_name":"Georg","last_name":"Hofferek","full_name":"Hofferek, Georg"},{"last_name":"Gupta","first_name":"Ashutosh","id":"335E5684-F248-11E8-B48F-1D18A9856A87","full_name":"Gupta, Ashutosh"},{"full_name":"Könighofer, Bettina","last_name":"Könighofer","first_name":"Bettina"},{"full_name":"Jiang, Jie","first_name":"Jie","last_name":"Jiang"},{"last_name":"Bloem","first_name":"Roderick","full_name":"Bloem, Roderick"}]},{"publist_id":"5823","ec_funded":1,"file_date_updated":"2020-07-14T12:44:48Z","department":[{"_id":"ToHe"}],"publisher":"Springer","publication_status":"published","acknowledgement":"and ERC Grant QUALITY.","year":"2013","volume":7966,"date_created":"2018-12-11T11:51:44Z","date_updated":"2020-08-11T10:09:09Z","author":[{"full_name":"Boker, Udi","id":"31E297B6-F248-11E8-B48F-1D18A9856A87","last_name":"Boker","first_name":"Udi"},{"first_name":"Denis","last_name":"Kuperberg","full_name":"Kuperberg, Denis"},{"full_name":"Kupferman, Orna","first_name":"Orna","last_name":"Kupferman"},{"full_name":"Skrzypczak, Michał","first_name":"Michał","last_name":"Skrzypczak"}],"month":"07","project":[{"_id":"25832EC2-B435-11E9-9278-68D0E5697425","grant_number":"S 11407_N23","call_identifier":"FWF","name":"Rigorous Systems Engineering"},{"name":"Quantitative Reactive Modeling","call_identifier":"FP7","_id":"25EE3708-B435-11E9-9278-68D0E5697425","grant_number":"267989"}],"quality_controlled":"1","oa":1,"language":[{"iso":"eng"}],"doi":"10.1007/978-3-642-39212-2_11","conference":{"name":"ICALP: Automata, Languages and Programming","start_date":"2013-07-08","location":"Riga, Latvia","end_date":"2013-07-12"},"alternative_title":["LNCS"],"type":"conference","issue":"PART 2","abstract":[{"lang":"eng","text":"Choices made by nondeterministic word automata depend on both the past (the prefix of the word read so far) and the future (the suffix yet to be read). In several applications, most notably synthesis, the future is diverse or unknown, leading to algorithms that are based on deterministic automata. Hoping to retain some of the advantages of nondeterministic automata, researchers have studied restricted classes of nondeterministic automata. Three such classes are nondeterministic automata that are good for trees (GFT; i.e., ones that can be expanded to tree automata accepting the derived tree languages, thus whose choices should satisfy diverse futures), good for games (GFG; i.e., ones whose choices depend only on the past), and determinizable by pruning (DBP; i.e., ones that embody equivalent deterministic automata). The theoretical properties and relative merits of the different classes are still open, having vagueness on whether they really differ from deterministic automata. In particular, while DBP ⊆ GFG ⊆ GFT, it is not known whether every GFT automaton is GFG and whether every GFG automaton is DBP. Also open is the possible succinctness of GFG and GFT automata compared to deterministic automata. We study these problems for ω-regular automata with all common acceptance conditions. We show that GFT=GFG⊃DBP, and describe a determinization construction for GFG automata."}],"intvolume":" 7966","ddc":["000"],"status":"public","title":"Nondeterminism in the presence of a diverse or unknown future","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"1387","oa_version":"Submitted Version","file":[{"file_id":"7857","relation":"main_file","date_updated":"2020-07-14T12:44:48Z","date_created":"2020-05-15T11:05:50Z","checksum":"98bc02e3793072e279ec8d364b381ff3","file_name":"2013_ICALP_Boker.pdf","access_level":"open_access","creator":"dernst","file_size":276982,"content_type":"application/pdf"}],"series_title":"Lecture Notes in Computer Science","scopus_import":1,"has_accepted_license":"1","article_processing_charge":"No","day":"01","page":"89 - 100","citation":{"short":"U. Boker, D. Kuperberg, O. Kupferman, M. Skrzypczak, 7966 (2013) 89–100.","mla":"Boker, Udi, et al. Nondeterminism in the Presence of a Diverse or Unknown Future. Vol. 7966, no. PART 2, Springer, 2013, pp. 89–100, doi:10.1007/978-3-642-39212-2_11.","chicago":"Boker, Udi, Denis Kuperberg, Orna Kupferman, and Michał Skrzypczak. “Nondeterminism in the Presence of a Diverse or Unknown Future.” Lecture Notes in Computer Science. Springer, 2013. https://doi.org/10.1007/978-3-642-39212-2_11.","ama":"Boker U, Kuperberg D, Kupferman O, Skrzypczak M. Nondeterminism in the presence of a diverse or unknown future. 2013;7966(PART 2):89-100. doi:10.1007/978-3-642-39212-2_11","apa":"Boker, U., Kuperberg, D., Kupferman, O., & Skrzypczak, M. (2013). Nondeterminism in the presence of a diverse or unknown future. Presented at the ICALP: Automata, Languages and Programming, Riga, Latvia: Springer. https://doi.org/10.1007/978-3-642-39212-2_11","ieee":"U. Boker, D. Kuperberg, O. Kupferman, and M. Skrzypczak, “Nondeterminism in the presence of a diverse or unknown future,” vol. 7966, no. PART 2. Springer, pp. 89–100, 2013.","ista":"Boker U, Kuperberg D, Kupferman O, Skrzypczak M. 2013. Nondeterminism in the presence of a diverse or unknown future. 7966(PART 2), 89–100."},"date_published":"2013-07-01T00:00:00Z"}]