[{"author":[{"full_name":"Becker, J. M.","last_name":"Becker","first_name":"J. M."},{"full_name":"Koutentakis, Georgios","last_name":"Koutentakis","first_name":"Georgios","id":"d7b23d3a-9e21-11ec-b482-f76739596b95"},{"first_name":"P.","last_name":"Schmelcher","full_name":"Schmelcher, P."}],"date_updated":"2023-12-11T10:55:52Z","date_created":"2023-12-10T23:00:58Z","volume":5,"year":"2023","acknowledgement":"This work has been funded by the Cluster of Excellence “Advanced Imaging of Matter” of the Deutsche Forschungsgemeinschaft (DFG)-EXC 2056-Project ID No. 390715994. G.M.K. gratefully acknowledges funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 101034413.","publication_status":"published","department":[{"_id":"MiLe"}],"publisher":"American Physical Society","file_date_updated":"2023-12-11T10:49:07Z","ec_funded":1,"article_number":"043039","doi":"10.1103/PhysRevResearch.5.043039","language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"arxiv":["2305.09529"]},"oa":1,"quality_controlled":"1","project":[{"grant_number":"101034413","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program"}],"month":"10","publication_identifier":{"issn":["2643-1564"]},"file":[{"creator":"dernst","content_type":"application/pdf","file_size":2362158,"access_level":"open_access","file_name":"2023_PhysReviewResearch_Becker.pdf","success":1,"checksum":"ee31c0d0de5d1b65591990ae6705a601","date_updated":"2023-12-11T10:49:07Z","date_created":"2023-12-11T10:49:07Z","file_id":"14672","relation":"main_file"}],"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14658","title":"Spin-charge correlations in finite one-dimensional multiband Fermi systems","ddc":["530"],"status":"public","intvolume":" 5","abstract":[{"text":"We investigate spin-charge separation of a spin-\r\n1\r\n2\r\n Fermi system confined in a triple well where multiple bands are occupied. We assume that our finite fermionic system is close to fully spin polarized while being doped by a hole and an impurity fermion with opposite spin. Our setup involves ferromagnetic couplings among the particles in different bands, leading to the development of strong spin-transport correlations in an intermediate interaction regime. Interactions are then strong enough to lift the degeneracy among singlet and triplet spin configurations in the well of the spin impurity but not strong enough to prohibit hole-induced magnetic excitations to the singlet state. Despite the strong spin-hole correlations, the system exhibits spin-charge deconfinement allowing for long-range entanglement of the spatial and spin degrees of freedom.","lang":"eng"}],"issue":"4","type":"journal_article","date_published":"2023-10-12T00:00:00Z","publication":"Physical Review Research","citation":{"chicago":"Becker, J. M., Georgios Koutentakis, and P. Schmelcher. “Spin-Charge Correlations in Finite One-Dimensional Multiband Fermi Systems.” Physical Review Research. American Physical Society, 2023. https://doi.org/10.1103/PhysRevResearch.5.043039.","mla":"Becker, J. M., et al. “Spin-Charge Correlations in Finite One-Dimensional Multiband Fermi Systems.” Physical Review Research, vol. 5, no. 4, 043039, American Physical Society, 2023, doi:10.1103/PhysRevResearch.5.043039.","short":"J.M. Becker, G. Koutentakis, P. Schmelcher, Physical Review Research 5 (2023).","ista":"Becker JM, Koutentakis G, Schmelcher P. 2023. Spin-charge correlations in finite one-dimensional multiband Fermi systems. Physical Review Research. 5(4), 043039.","apa":"Becker, J. M., Koutentakis, G., & Schmelcher, P. (2023). Spin-charge correlations in finite one-dimensional multiband Fermi systems. Physical Review Research. American Physical Society. https://doi.org/10.1103/PhysRevResearch.5.043039","ieee":"J. M. Becker, G. Koutentakis, and P. Schmelcher, “Spin-charge correlations in finite one-dimensional multiband Fermi systems,” Physical Review Research, vol. 5, no. 4. American Physical Society, 2023.","ama":"Becker JM, Koutentakis G, Schmelcher P. Spin-charge correlations in finite one-dimensional multiband Fermi systems. Physical Review Research. 2023;5(4). doi:10.1103/PhysRevResearch.5.043039"},"article_type":"original","day":"12","article_processing_charge":"Yes","has_accepted_license":"1","scopus_import":"1"},{"author":[{"full_name":"Volosniev, Artem","last_name":"Volosniev","first_name":"Artem","orcid":"0000-0003-0393-5525","id":"37D278BC-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Bighin, Giacomo","first_name":"Giacomo","last_name":"Bighin","id":"4CA96FD4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8823-9777"},{"full_name":"Santos, Luis","last_name":"Santos","first_name":"Luis"},{"full_name":"Peña Ardila, Luisllu A.","first_name":"Luisllu A.","last_name":"Peña Ardila"}],"volume":15,"date_created":"2023-12-10T13:03:07Z","date_updated":"2023-12-11T07:44:08Z","year":"2023","acknowledgement":"We thank Lauriane Chomaz for useful discussions and comments on the manuscript. We also\r\nthank Ragheed Al Hyder for comments on the manuscript.\r\nG.B. acknowledges support from the Austrian Science Fund (FWF),\r\nunder Project No. M2641-N27. This work is supported by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy EXC2181/1-\r\n390900948 (the Heidelberg STRUCTURES Excellence Cluster). A. G. V. acknowledges support from the European Union’s Horizon 2020 research and innovation programme under the\r\nMarie Skłodowska-Curie Grant Agreement No. 754411. L.A.P.A acknowledges by the PNRR\r\nMUR project PE0000023 - NQSTI and the Deutsche Forschungsgemeinschaft (DFG, German\r\nResearch Foundation) under Germany’s Excellence Strategy - EXC - 2123 Quantum Frontiers390837967 and FOR2247.","department":[{"_id":"MiLe"}],"publisher":"SciPost Foundation","publication_status":"published","ec_funded":1,"file_date_updated":"2023-12-11T07:42:04Z","article_number":"232","doi":"10.21468/scipostphys.15.6.232","language":[{"iso":"eng"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"arxiv":["2305.17969"]},"project":[{"grant_number":"M02641","_id":"26986C82-B435-11E9-9278-68D0E5697425","name":"A path-integral approach to composite impurities","call_identifier":"FWF"},{"_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020"}],"quality_controlled":"1","publication_identifier":{"issn":["2542-4653"]},"month":"12","file":[{"success":1,"checksum":"e664372a1fe9d628a9bb1d135ebab7d8","date_created":"2023-12-11T07:42:04Z","date_updated":"2023-12-11T07:42:04Z","file_id":"14669","relation":"main_file","creator":"dernst","file_size":3543541,"content_type":"application/pdf","access_level":"open_access","file_name":"2023_SciPostPhysics_Volosniev.pdf"}],"oa_version":"Published Version","_id":"14650","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 15","ddc":["530"],"title":"Non-equilibrium dynamics of dipolar polarons","status":"public","issue":"6","abstract":[{"text":"We study the out-of-equilibrium quantum dynamics of dipolar polarons, i.e., impurities immersed in a dipolar Bose-Einstein condensate, after a quench of the impurity-boson interaction. We show that the dipolar nature of the condensate and of the impurity results in anisotropic relaxation dynamics, in particular, anisotropic dressing of the polaron. More relevantly for cold-atom setups, quench dynamics is strongly affected by the interplay between dipolar anisotropy and trap geometry. Our findings pave the way for simulating impurities in anisotropic media utilizing experiments with dipolar mixtures.","lang":"eng"}],"type":"journal_article","date_published":"2023-12-07T00:00:00Z","citation":{"chicago":"Volosniev, Artem, Giacomo Bighin, Luis Santos, and Luisllu A. Peña Ardila. “Non-Equilibrium Dynamics of Dipolar Polarons.” SciPost Physics. SciPost Foundation, 2023. https://doi.org/10.21468/scipostphys.15.6.232.","mla":"Volosniev, Artem, et al. “Non-Equilibrium Dynamics of Dipolar Polarons.” SciPost Physics, vol. 15, no. 6, 232, SciPost Foundation, 2023, doi:10.21468/scipostphys.15.6.232.","short":"A. Volosniev, G. Bighin, L. Santos, L.A. Peña Ardila, SciPost Physics 15 (2023).","ista":"Volosniev A, Bighin G, Santos L, Peña Ardila LA. 2023. Non-equilibrium dynamics of dipolar polarons. SciPost Physics. 15(6), 232.","apa":"Volosniev, A., Bighin, G., Santos, L., & Peña Ardila, L. A. (2023). Non-equilibrium dynamics of dipolar polarons. SciPost Physics. SciPost Foundation. https://doi.org/10.21468/scipostphys.15.6.232","ieee":"A. Volosniev, G. Bighin, L. Santos, and L. A. Peña Ardila, “Non-equilibrium dynamics of dipolar polarons,” SciPost Physics, vol. 15, no. 6. SciPost Foundation, 2023.","ama":"Volosniev A, Bighin G, Santos L, Peña Ardila LA. Non-equilibrium dynamics of dipolar polarons. SciPost Physics. 2023;15(6). doi:10.21468/scipostphys.15.6.232"},"publication":"SciPost Physics","article_type":"original","has_accepted_license":"1","article_processing_charge":"No","day":"07","keyword":["General Physics and Astronomy"]},{"article_processing_charge":"Yes (in subscription journal)","day":"23","scopus_import":"1","date_published":"2023-11-23T00:00:00Z","article_type":"original","citation":{"mla":"Kluibenschedl, Florian, et al. “Advanced Motion Tracking for Interactive Mass Spectrometry Imaging (IMSI).” International Journal of Mass Spectrometry, vol. 495, 117168, Elsevier, 2023, doi:10.1016/j.ijms.2023.117168.","short":"F. Kluibenschedl, A. Ploner, C. Meisenbichler, R. Konrat, T. Müller, International Journal of Mass Spectrometry 495 (2023).","chicago":"Kluibenschedl, Florian, Anna Ploner, Christina Meisenbichler, Robert Konrat, and Thomas Müller. “Advanced Motion Tracking for Interactive Mass Spectrometry Imaging (IMSI).” International Journal of Mass Spectrometry. Elsevier, 2023. https://doi.org/10.1016/j.ijms.2023.117168.","ama":"Kluibenschedl F, Ploner A, Meisenbichler C, Konrat R, Müller T. Advanced motion tracking for interactive mass spectrometry imaging (IMSI). International Journal of Mass Spectrometry. 2023;495. doi:10.1016/j.ijms.2023.117168","ista":"Kluibenschedl F, Ploner A, Meisenbichler C, Konrat R, Müller T. 2023. Advanced motion tracking for interactive mass spectrometry imaging (IMSI). International Journal of Mass Spectrometry. 495, 117168.","ieee":"F. Kluibenschedl, A. Ploner, C. Meisenbichler, R. Konrat, and T. Müller, “Advanced motion tracking for interactive mass spectrometry imaging (IMSI),” International Journal of Mass Spectrometry, vol. 495. Elsevier, 2023.","apa":"Kluibenschedl, F., Ploner, A., Meisenbichler, C., Konrat, R., & Müller, T. (2023). Advanced motion tracking for interactive mass spectrometry imaging (IMSI). International Journal of Mass Spectrometry. Elsevier. https://doi.org/10.1016/j.ijms.2023.117168"},"publication":"International Journal of Mass Spectrometry","abstract":[{"lang":"eng","text":"Mass spectrometry imaging (MSI) is a powerful analytical technique for the two-dimensional (2D) localization of chemicals on surfaces. Conventional MSI experiments require to predefine the surface of interest based on photographic or microscopic images. Typically, these boundaries can no longer be changed or adjusted once the experiment has been started. In terms of a more interactive approach we recently developed a pen-like ionization interface which is directly connected to the mass spectrometer. The device allows the user to ionize chemicals by desorption electrospray ionization (DESI) and to freely move the interface over a surface of interest. A mini camera, which is mounted on the tip of the pen, magnifies the desorption area and enables a simple positioning of the pen. The combination of optical data from the camera module and chemical data obtained by mass analysis facilitates a novel type of imaging experiment: interactive mass spectrometry imaging (IMSI). For this application, we present a novel approach for a robust, optical flow-based motion detection. While the live video stream from the camera is used to track the pen's motion across the surface a post-acquisition algorithm correlates the coordinates of the pen trajectory with respective mass spectra obtained from a simultaneous mass spectrometric data acquisition. This algorithm is no longer dependent on a single, manually applied optical marker on the sample surface, which has to be visible on all video frames throughout the analysis. The advanced DESI-IMSI method was successfully tested on inkjet-printed letters as well as mouse brain tissue samples. Validation of the results was done by comparing DESI-IMSI with standard DESI-MSI data."}],"type":"journal_article","oa_version":"Published Version","intvolume":" 495","status":"public","title":"Advanced motion tracking for interactive mass spectrometry imaging (IMSI)","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14653","publication_identifier":{"issn":["1387-3806"]},"month":"11","language":[{"iso":"eng"}],"doi":"10.1016/j.ijms.2023.117168","quality_controlled":"1","main_file_link":[{"url":"https://doi.org/10.1016/j.ijms.2023.117168","open_access":"1"}],"oa":1,"article_number":"117168","volume":495,"date_created":"2023-12-10T23:00:57Z","date_updated":"2023-12-11T08:16:35Z","author":[{"id":"7499e70e-eb2c-11ec-b98b-f925648bc9d9","first_name":"Florian","last_name":"Kluibenschedl","full_name":"Kluibenschedl, Florian"},{"full_name":"Ploner, Anna","last_name":"Ploner","first_name":"Anna"},{"first_name":"Christina","last_name":"Meisenbichler","full_name":"Meisenbichler, Christina"},{"first_name":"Robert","last_name":"Konrat","full_name":"Konrat, Robert"},{"first_name":"Thomas","last_name":"Müller","full_name":"Müller, Thomas"}],"publisher":"Elsevier","department":[{"_id":"GradSch"}],"publication_status":"epub_ahead","year":"2023","acknowledgement":"We would like to thank Marco Sealey Cardona, PhD for help with the mouse brain samples and acknowledge the financial support by 1669 Förderkreis of the University of Innsbruck, Austria Wirtschaftsservice (AWS), D. Swarovski KG and Tyrolean Science Fund (TWF)."},{"oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1101/2023.11.30.569337"}],"citation":{"ama":"Bose M, Suresh V, Mishra U, et al. Dual role of FOXG1 in regulating gliogenesis in the developing neocortex via the FGF signalling pathway. bioRxiv. doi:10.1101/2023.11.30.569337","apa":"Bose, M., Suresh, V., Mishra, U., Talwar, I., Yadav, A., Biswas, S., … Tole, S. (n.d.). Dual role of FOXG1 in regulating gliogenesis in the developing neocortex via the FGF signalling pathway. bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2023.11.30.569337","ieee":"M. Bose et al., “Dual role of FOXG1 in regulating gliogenesis in the developing neocortex via the FGF signalling pathway,” bioRxiv. Cold Spring Harbor Laboratory.","ista":"Bose M, Suresh V, Mishra U, Talwar I, Yadav A, Biswas S, Hippenmeyer S, Tole S. Dual role of FOXG1 in regulating gliogenesis in the developing neocortex via the FGF signalling pathway. bioRxiv, 10.1101/2023.11.30.569337.","short":"M. Bose, V. Suresh, U. Mishra, I. Talwar, A. Yadav, S. Biswas, S. Hippenmeyer, S. Tole, BioRxiv (n.d.).","mla":"Bose, Mahima, et al. “Dual Role of FOXG1 in Regulating Gliogenesis in the Developing Neocortex via the FGF Signalling Pathway.” BioRxiv, Cold Spring Harbor Laboratory, doi:10.1101/2023.11.30.569337.","chicago":"Bose, Mahima, Varun Suresh, Urvi Mishra, Ishita Talwar, Anuradha Yadav, Shiona Biswas, Simon Hippenmeyer, and Shubha Tole. “Dual Role of FOXG1 in Regulating Gliogenesis in the Developing Neocortex via the FGF Signalling Pathway.” BioRxiv. Cold Spring Harbor Laboratory, n.d. https://doi.org/10.1101/2023.11.30.569337."},"publication":"bioRxiv","date_published":"2023-12-01T00:00:00Z","doi":"10.1101/2023.11.30.569337","language":[{"iso":"eng"}],"article_processing_charge":"No","month":"12","day":"01","_id":"14647","acknowledgement":"We thank Dr. Shital Suryavanshi and the animal house staff of the Tata Institute of\r\nFundamental Research (TIFR) for their excellent support; Gord Fishell and Goichi Miyoshi for\r\nthe Foxg1 floxed mouse line; Hiroshi Kawasaki for the plasmids pCAG-FGF8 and pCAGsFGFR3c. We thank Prof. S.K. Lee for the Foxg1lox/lox genotyping primers and protocol. We thank Dr. Deepak Modi and Dr. Vainav Patel for allowing us to use the NIRRCH FACS Facility and the staff of the NIRRCH and TIFR FACS facilities for their assistance.\r\nWe thank Denis Jabaudon for his critical comments on the manuscript and members of the\r\nJabaudon lab for helpful discussions. This work was funded by the Department of Atomic\r\nEnergy (DAE), Govt. of India (Project Identification no. RTI4003, DAE OM no.\r\n1303/2/2019/R&D-II/DAE/2079).","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2023","publisher":"Cold Spring Harbor Laboratory","department":[{"_id":"SiHi"}],"status":"public","publication_status":"submitted","title":"Dual role of FOXG1 in regulating gliogenesis in the developing neocortex via the FGF signalling pathway","author":[{"full_name":"Bose, Mahima","first_name":"Mahima","last_name":"Bose"},{"full_name":"Suresh, Varun","last_name":"Suresh","first_name":"Varun"},{"full_name":"Mishra, Urvi","first_name":"Urvi","last_name":"Mishra"},{"full_name":"Talwar, Ishita","first_name":"Ishita","last_name":"Talwar"},{"last_name":"Yadav","first_name":"Anuradha","full_name":"Yadav, Anuradha"},{"full_name":"Biswas, Shiona","last_name":"Biswas","first_name":"Shiona"},{"first_name":"Simon","last_name":"Hippenmeyer","id":"37B36620-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2279-1061","full_name":"Hippenmeyer, Simon"},{"full_name":"Tole, Shubha","first_name":"Shubha","last_name":"Tole"}],"oa_version":"Preprint","date_created":"2023-12-06T13:07:01Z","date_updated":"2023-12-11T07:37:17Z","type":"preprint","abstract":[{"text":"In the developing vertebrate central nervous system, neurons and glia typically arise sequentially from common progenitors. Here, we report that the transcription factor Forkhead Box G1 (Foxg1) regulates gliogenesis in the mouse neocortex via distinct cell-autonomous roles in progenitors and in postmitotic neurons that regulate different aspects of the gliogenic FGF signalling pathway. We demonstrate that loss of Foxg1 in cortical progenitors at neurogenic stages causes premature astrogliogenesis. We identify a novel FOXG1 target, the pro-gliogenic FGF pathway component Fgfr3, which is suppressed by FOXG1 cell-autonomously to maintain neurogenesis. Furthermore, FOXG1 can also suppress premature astrogliogenesis triggered by the augmentation of FGF signalling. We identify a second novel function of FOXG1 in regulating the expression of gliogenic ligand FGF18 in new born neocortical upper-layer neurons. Loss of FOXG1 in postmitotic neurons increases Fgf18 expression and enhances gliogenesis in the progenitors. These results fit well with the model that new born neurons secrete cues that trigger progenitors to produce the next wave of cell types, astrocytes. If FGF signalling is attenuated in Foxg1 null progenitors, they progress to oligodendrocyte production. Therefore, loss of FOXG1 transitions the progenitor to a gliogenic state, producing either astrocytes or oligodendrocytes depending on FGF signalling levels. Our results uncover how FOXG1 integrates extrinsic signalling via the FGF pathway to regulate the sequential generation of neurons, astrocytes, and oligodendrocytes in the cerebral cortex.","lang":"eng"}]},{"abstract":[{"lang":"eng","text":"The kinetics of the assembly of semiflexible filaments through end-to-end annealing is key to the structure of the cytoskeleton, but is not understood. We analyze this problem through scaling theory and simulations, and uncover a regime where filaments’ ends find each other through bending fluctuations without the need for the whole filament to diffuse. This results in a very substantial speedup of assembly in physiological regimes, and could help with understanding the dynamics of actin and intermediate filaments in biological processes such as wound healing and cell division."}],"issue":"22","type":"journal_article","oa_version":"Preprint","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14655","status":"public","title":"Transverse fluctuations control the assembly of semiflexible filaments","intvolume":" 131","day":"01","article_processing_charge":"No","scopus_import":"1","date_published":"2023-12-01T00:00:00Z","publication":"Physical Review Letters","citation":{"short":"V. Sorichetti, M. Lenz, Physical Review Letters 131 (2023).","mla":"Sorichetti, Valerio, and Martin Lenz. “Transverse Fluctuations Control the Assembly of Semiflexible Filaments.” Physical Review Letters, vol. 131, no. 22, 228401, American Physical Society, 2023, doi:10.1103/PhysRevLett.131.228401.","chicago":"Sorichetti, Valerio, and Martin Lenz. “Transverse Fluctuations Control the Assembly of Semiflexible Filaments.” Physical Review Letters. American Physical Society, 2023. https://doi.org/10.1103/PhysRevLett.131.228401.","ama":"Sorichetti V, Lenz M. Transverse fluctuations control the assembly of semiflexible filaments. Physical Review Letters. 2023;131(22). doi:10.1103/PhysRevLett.131.228401","apa":"Sorichetti, V., & Lenz, M. (2023). Transverse fluctuations control the assembly of semiflexible filaments. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.131.228401","ieee":"V. Sorichetti and M. Lenz, “Transverse fluctuations control the assembly of semiflexible filaments,” Physical Review Letters, vol. 131, no. 22. American Physical Society, 2023.","ista":"Sorichetti V, Lenz M. 2023. Transverse fluctuations control the assembly of semiflexible filaments. Physical Review Letters. 131(22), 228401."},"article_type":"original","article_number":"228401","author":[{"full_name":"Sorichetti, Valerio","first_name":"Valerio","last_name":"Sorichetti","id":"ef8a92cb-c7b6-11ec-8bea-e1fd5847bc5b","orcid":"0000-0002-9645-6576"},{"first_name":"Martin","last_name":"Lenz","full_name":"Lenz, Martin"}],"date_created":"2023-12-10T23:00:57Z","date_updated":"2023-12-11T07:59:25Z","volume":131,"year":"2023","acknowledgement":"The authors thank C´ecile Leduc and Duc-Quang Tran for invaluable help with understanding the experimental behavior of intermediate filaments, and Raphael Voituriez, Nicolas Levernier, and Alexander Grosberg for fruitful discussion on the theoretical model. V. S. also thanks Davide Michieletto, Maria Panoukidou, and Lorenzo Rovigatti for very helpful suggestions on the simulation model. M. L. was supported by Marie Curie Integration Grant No. PCIG12-GA-2012-334053, “Investissements d’Avenir” LabEx PALM (ANR-10-LABX- 0039-PALM), ANR Grants No. ANR-15-CE13-0004-03, No. ANR-21-CE11-0004-02 and No. ANR-22-CE30-0024, as well as ERC Starting Grant No. 677532. M.L.’s group belongs to the CNRS consortium AQV. Part of this work was performed using HPC resources from GENCI–IDRIS (Grants No. 2020-A0090712066 and No. 2021-A0110712066).","publication_status":"published","department":[{"_id":"AnSa"}],"publisher":"American Physical Society","month":"12","publication_identifier":{"issn":["0031-9007"],"eissn":["1079-7114"]},"doi":"10.1103/PhysRevLett.131.228401","language":[{"iso":"eng"}],"external_id":{"arxiv":["2303.03088"]},"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2303.03088","open_access":"1"}],"oa":1,"quality_controlled":"1"},{"language":[{"iso":"eng"}],"date_published":"2023-12-04T00:00:00Z","doi":"10.1112/blms.12965","article_type":"original","quality_controlled":"1","publication":"Bulletin of the London Mathematical Society","oa":1,"citation":{"chicago":"Ivanov, Grigory, and Márton Naszódi. “Quantitative Steinitz Theorem: A Polynomial Bound.” Bulletin of the London Mathematical Society. London Mathematical Society, 2023. https://doi.org/10.1112/blms.12965.","mla":"Ivanov, Grigory, and Márton Naszódi. “Quantitative Steinitz Theorem: A Polynomial Bound.” Bulletin of the London Mathematical Society, London Mathematical Society, 2023, doi:10.1112/blms.12965.","short":"G. Ivanov, M. Naszódi, Bulletin of the London Mathematical Society (2023).","ista":"Ivanov G, Naszódi M. 2023. Quantitative Steinitz theorem: A polynomial bound. Bulletin of the London Mathematical Society.","apa":"Ivanov, G., & Naszódi, M. (2023). Quantitative Steinitz theorem: A polynomial bound. Bulletin of the London Mathematical Society. London Mathematical Society. https://doi.org/10.1112/blms.12965","ieee":"G. Ivanov and M. Naszódi, “Quantitative Steinitz theorem: A polynomial bound,” Bulletin of the London Mathematical Society. London Mathematical Society, 2023.","ama":"Ivanov G, Naszódi M. Quantitative Steinitz theorem: A polynomial bound. Bulletin of the London Mathematical Society. 2023. doi:10.1112/blms.12965"},"main_file_link":[{"url":" https://doi.org/10.1112/blms.12965","open_access":"1"}],"external_id":{"arxiv":["2212.04308"]},"day":"04","month":"12","article_processing_charge":"Yes (via OA deal)","publication_identifier":{"eissn":["1469-2120"],"issn":["0024-6093"]},"scopus_import":"1","date_updated":"2023-12-11T10:03:54Z","date_created":"2023-12-10T23:00:58Z","oa_version":"Published Version","author":[{"full_name":"Ivanov, Grigory","last_name":"Ivanov","first_name":"Grigory","id":"87744F66-5C6F-11EA-AFE0-D16B3DDC885E"},{"full_name":"Naszódi, Márton","last_name":"Naszódi","first_name":"Márton"}],"publication_status":"epub_ahead","status":"public","title":"Quantitative Steinitz theorem: A polynomial bound","department":[{"_id":"UlWa"}],"publisher":"London Mathematical Society","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14660","acknowledgement":"M.N. was supported by the János Bolyai Scholarship of the Hungarian Academy of Sciences aswell as the National Research, Development and Innovation Fund (NRDI) grants K119670 andK131529, and the ÚNKP-22-5 New National Excellence Program of the Ministry for Innovationand Technology from the source of the NRDI as well as the ELTE TKP 2021-NKTA-62 fundingscheme","year":"2023","abstract":[{"text":"The classical Steinitz theorem states that if the origin belongs to the interior of the convex hull of a set 𝑆⊂ℝ𝑑, then there are at most 2𝑑 points of 𝑆 whose convex hull contains the origin in the interior. Bárány, Katchalski,and Pach proved the following quantitative version of Steinitz’s theorem. Let 𝑄 be a convex polytope in ℝ𝑑 containing the standard Euclidean unit ball 𝐁𝑑. Then there exist at most 2𝑑 vertices of 𝑄 whose convex hull 𝑄′ satisfies 𝑟𝐁𝑑⊂𝑄′ with 𝑟⩾𝑑−2𝑑. They conjectured that 𝑟⩾𝑐𝑑−1∕2 holds with a universal constant 𝑐>0. We prove 𝑟⩾15𝑑2, the first polynomial lower bound on 𝑟. Furthermore, we show that 𝑟 is not greater than 2/√𝑑.","lang":"eng"}],"type":"journal_article"},{"article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","day":"21","scopus_import":"1","date_published":"2023-11-21T00:00:00Z","article_type":"original","citation":{"ama":"Chintaluri C, Vogels TP. Metabolically regulated spiking could serve neuronal energy homeostasis and protect from reactive oxygen species. Proceedings of the National Academy of Sciences of the United States of America. 2023;120(48). doi:10.1073/pnas.2306525120","ieee":"C. Chintaluri and T. P. Vogels, “Metabolically regulated spiking could serve neuronal energy homeostasis and protect from reactive oxygen species,” Proceedings of the National Academy of Sciences of the United States of America, vol. 120, no. 48. National Academy of Sciences, 2023.","apa":"Chintaluri, C., & Vogels, T. P. (2023). Metabolically regulated spiking could serve neuronal energy homeostasis and protect from reactive oxygen species. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2306525120","ista":"Chintaluri C, Vogels TP. 2023. Metabolically regulated spiking could serve neuronal energy homeostasis and protect from reactive oxygen species. Proceedings of the National Academy of Sciences of the United States of America. 120(48), e2306525120.","short":"C. Chintaluri, T.P. Vogels, Proceedings of the National Academy of Sciences of the United States of America 120 (2023).","mla":"Chintaluri, Chaitanya, and Tim P. Vogels. “Metabolically Regulated Spiking Could Serve Neuronal Energy Homeostasis and Protect from Reactive Oxygen Species.” Proceedings of the National Academy of Sciences of the United States of America, vol. 120, no. 48, e2306525120, National Academy of Sciences, 2023, doi:10.1073/pnas.2306525120.","chicago":"Chintaluri, Chaitanya, and Tim P Vogels. “Metabolically Regulated Spiking Could Serve Neuronal Energy Homeostasis and Protect from Reactive Oxygen Species.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2023. https://doi.org/10.1073/pnas.2306525120."},"publication":"Proceedings of the National Academy of Sciences of the United States of America","issue":"48","abstract":[{"lang":"eng","text":"So-called spontaneous activity is a central hallmark of most nervous systems. Such non-causal firing is contrary to the tenet of spikes as a means of communication, and its purpose remains unclear. We propose that self-initiated firing can serve as a release valve to protect neurons from the toxic conditions arising in mitochondria from lower-than-baseline energy consumption. To demonstrate the viability of our hypothesis, we built a set of models that incorporate recent experimental results indicating homeostatic control of metabolic products—Adenosine triphosphate (ATP), adenosine diphosphate (ADP), and reactive oxygen species (ROS)—by changes in firing. We explore the relationship of metabolic cost of spiking with its effect on the temporal patterning of spikes and reproduce experimentally observed changes in intrinsic firing in the fruitfly dorsal fan-shaped body neuron in a model with ROS-modulated potassium channels. We also show that metabolic spiking homeostasis can produce indefinitely sustained avalanche dynamics in cortical circuits. Our theory can account for key features of neuronal activity observed in many studies ranging from ion channel function all the way to resting state dynamics. We finish with a set of experimental predictions that would confirm an integrated, crucial role for metabolically regulated spiking and firmly link metabolic homeostasis and neuronal function."}],"type":"journal_article","oa_version":"None","file":[{"access_level":"open_access","file_name":"2023_PNAS_Chintaluri.pdf","creator":"dernst","content_type":"application/pdf","file_size":16891602,"file_id":"14678","relation":"main_file","success":1,"checksum":"bf4ec38602a70dae4338077a5a4d497f","date_created":"2023-12-11T12:45:12Z","date_updated":"2023-12-11T12:45:12Z"}],"intvolume":" 120","title":"Metabolically regulated spiking could serve neuronal energy homeostasis and protect from reactive oxygen species","ddc":["570"],"status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14666","publication_identifier":{"issn":["0027-8424"],"eissn":["1091-6490"]},"month":"11","language":[{"iso":"eng"}],"doi":"10.1073/pnas.2306525120","project":[{"grant_number":"214316/Z/18/Z","_id":"c084a126-5a5b-11eb-8a69-d75314a70a87","name":"What’s in a memory? Spatiotemporal dynamics in strongly coupled recurrent neuronal networks."}],"quality_controlled":"1","external_id":{"pmid":["37988463"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"file_date_updated":"2023-12-11T12:45:12Z","article_number":"e2306525120","volume":120,"date_created":"2023-12-10T23:01:00Z","date_updated":"2023-12-11T12:47:41Z","related_material":{"link":[{"url":"https://github.com/ccluri/metabolic_spiking","relation":"software"}]},"author":[{"first_name":"Chaitanya","last_name":"Chintaluri","id":"E4EDB536-3485-11EA-98D2-20AF3DDC885E","full_name":"Chintaluri, Chaitanya"},{"full_name":"Vogels, Tim P","orcid":"0000-0003-3295-6181","id":"CB6FF8D2-008F-11EA-8E08-2637E6697425","last_name":"Vogels","first_name":"Tim P"}],"publisher":"National Academy of Sciences","department":[{"_id":"TiVo"}],"publication_status":"published","pmid":1,"year":"2023","acknowledgement":"We thank Prof. C. Nazaret and Prof. J.-P. Mazat for sharing the code of their mitochondrial model. We also thank G. Miesenböck, E. Marder, L. Abbott, A. Kempf, P. Hasenhuetl, W. Podlaski, F. Zenke, E. Agnes, P. Bozelos, J. Watson, B. Confavreux, and G. Christodoulou, and the rest of the Vogels Lab for their feedback. This work was funded by Wellcome Trust and Royal Society Sir Henry Dale Research Fellowship (WT100000), a Wellcome Trust Senior Research Fellowship (214316/Z/18/Z), and a UK Research and Innovation, Biotechnology and Biological Sciences Research Council grant (UKRI-BBSRC BB/N019512/1)."},{"file_date_updated":"2023-12-11T11:30:37Z","ec_funded":1,"year":"2023","acknowledgement":"M.N. was supported by the European Union Horizon 2020 Grant 665385. J.C. was supported by the European Research Council Consolidator Grant 281511. G.T. was supported by the Austrian Science Fund (FWF) Grant P34015. C.S. was supported by an Institute of Science and Technology fellow award and by the National Science Foundation (NSF) Award No. 1922658. We thank Peter Baracskay, Karola Kaefer, and Hugo Malagon-Vina for the acquisition of the data. We also thank Federico Stella, Wiktor Młynarski, Dori Derdikman, Colin Bredenberg, Roman Huszar, Heloisa Chiossi, Lorenzo Posani, and Mohamady El-Gaby for comments on an earlier version of the manuscript.","pmid":1,"publication_status":"published","publisher":"Society of Neuroscience","department":[{"_id":"JoCs"},{"_id":"GaTk"}],"author":[{"full_name":"Nardin, Michele","id":"30BD0376-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8849-6570","first_name":"Michele","last_name":"Nardin"},{"full_name":"Csicsvari, Jozsef L","orcid":"0000-0002-5193-4036","id":"3FA14672-F248-11E8-B48F-1D18A9856A87","last_name":"Csicsvari","first_name":"Jozsef L"},{"first_name":"Gašper","last_name":"Tkačik","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6699-1455","full_name":"Tkačik, Gašper"},{"full_name":"Savin, Cristina","id":"3933349E-F248-11E8-B48F-1D18A9856A87","last_name":"Savin","first_name":"Cristina"}],"date_created":"2023-12-10T23:00:58Z","date_updated":"2023-12-11T11:37:20Z","volume":43,"month":"11","publication_identifier":{"eissn":["1529-2401"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1523/JNEUROSCI.0194-23.2023"}],"external_id":{"pmid":["37758476"]},"oa":1,"quality_controlled":"1","project":[{"grant_number":"281511","_id":"257A4776-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"Memory-related information processing in neuronal circuits of the hippocampus and entorhinal cortex"},{"name":"Efficient coding with biophysical realism","_id":"626c45b5-2b32-11ec-9570-e509828c1ba6","grant_number":"P34015"},{"grant_number":"665385","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","name":"International IST Doctoral Program","call_identifier":"H2020"}],"doi":"10.1523/JNEUROSCI.0194-23.2023","language":[{"iso":"eng"}],"type":"journal_article","abstract":[{"lang":"eng","text":"Although much is known about how single neurons in the hippocampus represent an animal's position, how circuit interactions contribute to spatial coding is less well understood. Using a novel statistical estimator and theoretical modeling, both developed in the framework of maximum entropy models, we reveal highly structured CA1 cell-cell interactions in male rats during open field exploration. The statistics of these interactions depend on whether the animal is in a familiar or novel environment. In both conditions the circuit interactions optimize the encoding of spatial information, but for regimes that differ in the informativeness of their spatial inputs. This structure facilitates linear decodability, making the information easy to read out by downstream circuits. Overall, our findings suggest that the efficient coding hypothesis is not only applicable to individual neuron properties in the sensory periphery, but also to neural interactions in the central brain."}],"issue":"48","_id":"14656","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"The structure of hippocampal CA1 interactions optimizes spatial coding across experience","ddc":["570"],"status":"public","intvolume":" 43","oa_version":"Published Version","file":[{"date_updated":"2023-12-11T11:30:37Z","date_created":"2023-12-11T11:30:37Z","checksum":"e2503c8f84be1050e28f64320f1d5bd2","relation":"main_file","embargo":"2024-06-01","file_id":"14674","file_size":2280632,"content_type":"application/pdf","creator":"dernst","embargo_to":"open_access","file_name":"2023_JourNeuroscience_Nardin.pdf","access_level":"closed"}],"scopus_import":"1","day":"29","article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","publication":"The Journal of Neuroscience","citation":{"chicago":"Nardin, Michele, Jozsef L Csicsvari, Gašper Tkačik, and Cristina Savin. “The Structure of Hippocampal CA1 Interactions Optimizes Spatial Coding across Experience.” The Journal of Neuroscience. Society of Neuroscience, 2023. https://doi.org/10.1523/JNEUROSCI.0194-23.2023.","short":"M. Nardin, J.L. Csicsvari, G. Tkačik, C. Savin, The Journal of Neuroscience 43 (2023) 8140–8156.","mla":"Nardin, Michele, et al. “The Structure of Hippocampal CA1 Interactions Optimizes Spatial Coding across Experience.” The Journal of Neuroscience, vol. 43, no. 48, Society of Neuroscience, 2023, pp. 8140–56, doi:10.1523/JNEUROSCI.0194-23.2023.","apa":"Nardin, M., Csicsvari, J. L., Tkačik, G., & Savin, C. (2023). The structure of hippocampal CA1 interactions optimizes spatial coding across experience. The Journal of Neuroscience. Society of Neuroscience. https://doi.org/10.1523/JNEUROSCI.0194-23.2023","ieee":"M. Nardin, J. L. Csicsvari, G. Tkačik, and C. Savin, “The structure of hippocampal CA1 interactions optimizes spatial coding across experience,” The Journal of Neuroscience, vol. 43, no. 48. Society of Neuroscience, pp. 8140–8156, 2023.","ista":"Nardin M, Csicsvari JL, Tkačik G, Savin C. 2023. The structure of hippocampal CA1 interactions optimizes spatial coding across experience. The Journal of Neuroscience. 43(48), 8140–8156.","ama":"Nardin M, Csicsvari JL, Tkačik G, Savin C. The structure of hippocampal CA1 interactions optimizes spatial coding across experience. The Journal of Neuroscience. 2023;43(48):8140-8156. doi:10.1523/JNEUROSCI.0194-23.2023"},"article_type":"original","page":"8140-8156","date_published":"2023-11-29T00:00:00Z"},{"year":"2023","acknowledgement":"K.C. acknowledges support from the ERC CoG 863818(ForM-SMArt). J.T. is supported by Center for Foundations ofModern Computer Science (Charles Univ. project UNCE/SCI/004).","pmid":1,"publication_status":"published","publisher":"The Royal Society","department":[{"_id":"KrCh"}],"author":[{"last_name":"Tkadlec","first_name":"Josef","orcid":"0000-0002-1097-9684","id":"3F24CCC8-F248-11E8-B48F-1D18A9856A87","full_name":"Tkadlec, Josef"},{"first_name":"Kamran","last_name":"Kaveh","full_name":"Kaveh, Kamran"},{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","first_name":"Krishnendu","last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu"},{"last_name":"Nowak","first_name":"Martin A.","full_name":"Nowak, Martin A."}],"date_created":"2023-12-10T23:00:58Z","date_updated":"2023-12-11T11:17:53Z","volume":20,"article_number":"20230355","file_date_updated":"2023-12-11T11:10:32Z","ec_funded":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"pmid":["38016637"]},"quality_controlled":"1","project":[{"_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","grant_number":"863818","call_identifier":"H2020","name":"Formal Methods for Stochastic Models: Algorithms and Applications"}],"doi":"10.1098/rsif.2023.0355","language":[{"iso":"eng"}],"month":"11","publication_identifier":{"eissn":["1742-5662"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14657","title":"Evolutionary dynamics of mutants that modify population structure","ddc":["000","570"],"status":"public","intvolume":" 20","file":[{"creator":"dernst","file_size":1720243,"content_type":"application/pdf","file_name":"2023_RoyalInterface_Tkadlec.pdf","access_level":"open_access","date_updated":"2023-12-11T11:10:32Z","date_created":"2023-12-11T11:10:32Z","success":1,"checksum":"2eefab13127c7786dbd33303c482a004","file_id":"14673","relation":"main_file"}],"oa_version":"Published Version","type":"journal_article","abstract":[{"text":"Natural selection is usually studied between mutants that differ in reproductive rate, but are subject to the same population structure. Here we explore how natural selection acts on mutants that have the same reproductive rate, but different population structures. In our framework, population structure is given by a graph that specifies where offspring can disperse. The invading mutant disperses offspring on a different graph than the resident wild-type. We find that more densely connected dispersal graphs tend to increase the invader’s fixation probability, but the exact relationship between structure and fixation probability is subtle. We present three main results. First, we prove that if both invader and resident are on complete dispersal graphs, then removing a single edge in the invader’s dispersal graph reduces its fixation probability. Second, we show that for certain island models higher invader’s connectivity increases its fixation probability, but the magnitude of the effect depends on the exact layout of the connections. Third, we show that for lattices the effect of different connectivity is comparable to that of different fitness: for large population size, the invader’s fixation probability is either constant or exponentially small, depending on whether it is more or less connected than the resident.","lang":"eng"}],"issue":"208","publication":"Journal of the Royal Society, Interface","citation":{"chicago":"Tkadlec, Josef, Kamran Kaveh, Krishnendu Chatterjee, and Martin A. Nowak. “Evolutionary Dynamics of Mutants That Modify Population Structure.” Journal of the Royal Society, Interface. The Royal Society, 2023. https://doi.org/10.1098/rsif.2023.0355.","short":"J. Tkadlec, K. Kaveh, K. Chatterjee, M.A. Nowak, Journal of the Royal Society, Interface 20 (2023).","mla":"Tkadlec, Josef, et al. “Evolutionary Dynamics of Mutants That Modify Population Structure.” Journal of the Royal Society, Interface, vol. 20, no. 208, 20230355, The Royal Society, 2023, doi:10.1098/rsif.2023.0355.","apa":"Tkadlec, J., Kaveh, K., Chatterjee, K., & Nowak, M. A. (2023). Evolutionary dynamics of mutants that modify population structure. Journal of the Royal Society, Interface. The Royal Society. https://doi.org/10.1098/rsif.2023.0355","ieee":"J. Tkadlec, K. Kaveh, K. Chatterjee, and M. A. Nowak, “Evolutionary dynamics of mutants that modify population structure,” Journal of the Royal Society, Interface, vol. 20, no. 208. The Royal Society, 2023.","ista":"Tkadlec J, Kaveh K, Chatterjee K, Nowak MA. 2023. Evolutionary dynamics of mutants that modify population structure. Journal of the Royal Society, Interface. 20(208), 20230355.","ama":"Tkadlec J, Kaveh K, Chatterjee K, Nowak MA. Evolutionary dynamics of mutants that modify population structure. Journal of the Royal Society, Interface. 2023;20(208). doi:10.1098/rsif.2023.0355"},"article_type":"original","date_published":"2023-11-29T00:00:00Z","scopus_import":"1","day":"29","article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1"},{"publication_identifier":{"eissn":["1520-5126"],"issn":["0002-7863"]},"month":"11","language":[{"iso":"eng"}],"doi":"10.1021/jacs.3c08666","quality_controlled":"1","oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"pmid":["37917939"]},"file_date_updated":"2023-12-11T11:44:54Z","volume":145,"date_created":"2023-12-10T23:00:59Z","date_updated":"2023-12-11T11:47:07Z","author":[{"last_name":"Hema","first_name":"Kuntrapakam","full_name":"Hema, Kuntrapakam"},{"last_name":"Grommet","first_name":"Angela B.","full_name":"Grommet, Angela B."},{"full_name":"Białek, Michał J.","last_name":"Białek","first_name":"Michał J."},{"first_name":"Jinhua","last_name":"Wang","full_name":"Wang, Jinhua"},{"first_name":"Laura","last_name":"Schneider","full_name":"Schneider, Laura"},{"last_name":"Drechsler","first_name":"Christoph","full_name":"Drechsler, Christoph"},{"full_name":"Yanshyna, Oksana","first_name":"Oksana","last_name":"Yanshyna"},{"last_name":"Diskin-Posner","first_name":"Yael","full_name":"Diskin-Posner, Yael"},{"first_name":"Guido H.","last_name":"Clever","full_name":"Clever, Guido H."},{"full_name":"Klajn, Rafal","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","first_name":"Rafal","last_name":"Klajn"}],"publisher":"American Chemical Society","department":[{"_id":"RaKl"}],"publication_status":"published","pmid":1,"year":"2023","acknowledgement":"We acknowledge funding from the European Union’s Horizon 2020 Research and Innovation Program under the European Research Council (grant agreement 820008).We also thank the Deutsche Forschungsgemeinschaft (DFG) for support through priority program SPP1807(CL489/3-2) and RESOLV Cluster of Excellence EXC2033 (project number 390677874). A.B.G. acknowledges funding from the Zuckerman STEM Leadership Program. DFT calculations were carried out using resources provided by the Wrocław Center for Networking and Supercomputing, grant 329.","article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","day":"02","scopus_import":"1","date_published":"2023-11-02T00:00:00Z","page":"24755-24764","article_type":"original","citation":{"short":"K. Hema, A.B. Grommet, M.J. Białek, J. Wang, L. Schneider, C. Drechsler, O. Yanshyna, Y. Diskin-Posner, G.H. Clever, R. Klajn, Journal of the American Chemical Society 145 (2023) 24755–24764.","mla":"Hema, Kuntrapakam, et al. “Guest Encapsulation Alters the Thermodynamic Landscape of a Coordination Host.” Journal of the American Chemical Society, vol. 145, no. 45, American Chemical Society, 2023, pp. 24755–64, doi:10.1021/jacs.3c08666.","chicago":"Hema, Kuntrapakam, Angela B. Grommet, Michał J. Białek, Jinhua Wang, Laura Schneider, Christoph Drechsler, Oksana Yanshyna, Yael Diskin-Posner, Guido H. Clever, and Rafal Klajn. “Guest Encapsulation Alters the Thermodynamic Landscape of a Coordination Host.” Journal of the American Chemical Society. American Chemical Society, 2023. https://doi.org/10.1021/jacs.3c08666.","ama":"Hema K, Grommet AB, Białek MJ, et al. Guest encapsulation alters the thermodynamic landscape of a coordination host. Journal of the American Chemical Society. 2023;145(45):24755-24764. doi:10.1021/jacs.3c08666","ieee":"K. Hema et al., “Guest encapsulation alters the thermodynamic landscape of a coordination host,” Journal of the American Chemical Society, vol. 145, no. 45. American Chemical Society, pp. 24755–24764, 2023.","apa":"Hema, K., Grommet, A. B., Białek, M. J., Wang, J., Schneider, L., Drechsler, C., … Klajn, R. (2023). Guest encapsulation alters the thermodynamic landscape of a coordination host. Journal of the American Chemical Society. American Chemical Society. https://doi.org/10.1021/jacs.3c08666","ista":"Hema K, Grommet AB, Białek MJ, Wang J, Schneider L, Drechsler C, Yanshyna O, Diskin-Posner Y, Clever GH, Klajn R. 2023. Guest encapsulation alters the thermodynamic landscape of a coordination host. Journal of the American Chemical Society. 145(45), 24755–24764."},"publication":"Journal of the American Chemical Society","issue":"45","abstract":[{"text":"The architecture of self-assembled host molecules can profoundly affect the properties of the encapsulated guests. For example, a rigid cage with small windows can efficiently protect its contents from the environment; in contrast, tube-shaped, flexible hosts with large openings and an easily accessible cavity are ideally suited for catalysis. Here, we report a “Janus” nature of a Pd6L4 coordination host previously reported to exist exclusively as a tube isomer (T). We show that upon encapsulating various tetrahedrally shaped guests, T can reconfigure into a cage-shaped host (C) in quantitative yield. Extracting the guest affords empty C, which is metastable and spontaneously relaxes to T, and the T⇄C interconversion can be repeated for multiple cycles. Reversible toggling between two vastly different isomers paves the way toward controlling functional properties of coordination hosts “on demand”.","lang":"eng"}],"type":"journal_article","oa_version":"Published Version","file":[{"creator":"dernst","content_type":"application/pdf","file_size":4304472,"file_name":"2023_JACS_Hema.pdf","access_level":"open_access","date_created":"2023-12-11T11:44:54Z","date_updated":"2023-12-11T11:44:54Z","success":1,"checksum":"a1f37df6b83f88f51ba64468ce0c1589","file_id":"14675","relation":"main_file"}],"intvolume":" 145","title":"Guest encapsulation alters the thermodynamic landscape of a coordination host","ddc":["540"],"status":"public","_id":"14664","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"volume":13,"date_updated":"2023-12-11T11:55:35Z","date_created":"2023-12-10T23:00:59Z","author":[{"first_name":"Jinyan","last_name":"Zhao","full_name":"Zhao, Jinyan"},{"full_name":"Yao, Zihao","first_name":"Zihao","last_name":"Yao"},{"full_name":"Bunting, Rhys","id":"91deeae8-1207-11ec-b130-c194ad5b50c6","orcid":"0000-0001-6928-074X","first_name":"Rhys","last_name":"Bunting"},{"last_name":"Hu","first_name":"P.","full_name":"Hu, P."},{"last_name":"Wang","first_name":"Jianguo","full_name":"Wang, Jianguo"}],"publisher":"American Chemical Society","department":[{"_id":"MaIb"}],"publication_status":"published","acknowledgement":"The authors acknowledge the financial support from the National Natural Science Foundation of China (22008211, 92045303, U21A20298), the National Key Research and Development Project of China (2021YFA1500900, 2022YFE0113800), and Zhejiang Innovation Team (2017R5203).","year":"2023","file_date_updated":"2023-12-11T11:55:09Z","language":[{"iso":"eng"}],"doi":"10.1021/acscatal.3c03893","quality_controlled":"1","oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"publication_identifier":{"eissn":["2155-5435"]},"month":"11","file":[{"success":1,"checksum":"a97c771077af71ddfb2249e34530895c","date_updated":"2023-12-11T11:55:09Z","date_created":"2023-12-11T11:55:09Z","file_id":"14676","relation":"main_file","creator":"dernst","file_size":14813812,"content_type":"application/pdf","access_level":"open_access","file_name":"2023_ACSCatalysis_.pdf"}],"oa_version":"Published Version","intvolume":" 13","title":"Microkinetic modeling with size-dependent and adsorbate-adsorbate interactions for the direct synthesis of H₂O₂ over Pd nanoparticles","status":"public","ddc":["540"],"_id":"14663","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"22","abstract":[{"lang":"eng","text":"As a bottleneck in the direct synthesis of hydrogen peroxide, the development of an efficient palladium-based catalyst has garnered great attention. However, elusive active centers and reaction mechanism issues inhibit further optimization of its performance. In this work, advanced microkinetic modeling with the adsorbate–adsorbate interaction and nanoparticle size effect based on first-principles calculations is developed. A full mechanism uncovering the significance of adsorbate–adsorbate interaction is determined on Pd nanoparticles. We demonstrate unambiguously that Pd(100) with main coverage species of O2 and H is beneficial to H2O2 production, being consistent with experimental operando observation, while H2O forms on Pd(111) covered by O species and Pd(211) covered by O and OH species. Kinetic analyses further enable quantitative estimation of the influence of temperature, pressure, and particle size. Large-size Pd nanoparticles are found to achieve a high H2O2 reaction rate when the operating conditions are moderate temperature and higher oxygen partial pressure. We reveal that specific facets of the Pd nanoparticles are crucial factors for their selectivity and activity. Consistent with the experiment, the production of H2O2 is discovered to be more favorable on Pd nanoparticles containing Pd(100) facets. The ratio of H2/O2 induces substantial variations in the coverage of intermediates of O2 and H on Pd(100), resulting in a change in product selectivity."}],"type":"journal_article","date_published":"2023-11-06T00:00:00Z","page":"15054-15073","article_type":"original","citation":{"ieee":"J. Zhao, Z. Yao, R. Bunting, P. Hu, and J. Wang, “Microkinetic modeling with size-dependent and adsorbate-adsorbate interactions for the direct synthesis of H₂O₂ over Pd nanoparticles,” ACS Catalysis, vol. 13, no. 22. American Chemical Society, pp. 15054–15073, 2023.","apa":"Zhao, J., Yao, Z., Bunting, R., Hu, P., & Wang, J. (2023). Microkinetic modeling with size-dependent and adsorbate-adsorbate interactions for the direct synthesis of H₂O₂ over Pd nanoparticles. ACS Catalysis. American Chemical Society. https://doi.org/10.1021/acscatal.3c03893","ista":"Zhao J, Yao Z, Bunting R, Hu P, Wang J. 2023. Microkinetic modeling with size-dependent and adsorbate-adsorbate interactions for the direct synthesis of H₂O₂ over Pd nanoparticles. ACS Catalysis. 13(22), 15054–15073.","ama":"Zhao J, Yao Z, Bunting R, Hu P, Wang J. Microkinetic modeling with size-dependent and adsorbate-adsorbate interactions for the direct synthesis of H₂O₂ over Pd nanoparticles. ACS Catalysis. 2023;13(22):15054-15073. doi:10.1021/acscatal.3c03893","chicago":"Zhao, Jinyan, Zihao Yao, Rhys Bunting, P. Hu, and Jianguo Wang. “Microkinetic Modeling with Size-Dependent and Adsorbate-Adsorbate Interactions for the Direct Synthesis of H₂O₂ over Pd Nanoparticles.” ACS Catalysis. American Chemical Society, 2023. https://doi.org/10.1021/acscatal.3c03893.","short":"J. Zhao, Z. Yao, R. Bunting, P. Hu, J. Wang, ACS Catalysis 13 (2023) 15054–15073.","mla":"Zhao, Jinyan, et al. “Microkinetic Modeling with Size-Dependent and Adsorbate-Adsorbate Interactions for the Direct Synthesis of H₂O₂ over Pd Nanoparticles.” ACS Catalysis, vol. 13, no. 22, American Chemical Society, 2023, pp. 15054–73, doi:10.1021/acscatal.3c03893."},"publication":"ACS Catalysis","article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","day":"06","scopus_import":"1"},{"intvolume":" 59","status":"public","title":"Functional CLT for non-Hermitian random matrices","_id":"14667","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","type":"journal_article","issue":"4","abstract":[{"lang":"eng","text":"For large dimensional non-Hermitian random matrices X with real or complex independent, identically distributed, centered entries, we consider the fluctuations of f (X) as a matrix where f is an analytic function around the spectrum of X. We prove that for a generic bounded square matrix A, the quantity Tr f (X)A exhibits Gaussian fluctuations as the matrix size grows to infinity, which consists of two independent modes corresponding to the tracial and traceless parts of A. We find a new formula for the variance of the traceless part that involves the Frobenius norm of A and the L2-norm of f on the boundary of the limiting spectrum. "},{"lang":"fre","text":"On étudie les fluctuations de f (X), où X est une matrice aléatoire non-hermitienne de grande taille à coefficients i.i.d. (réels ou complexes), et f une fonction analytique sur un domaine qui contient le spectre de X. On prouve que, pour une matrice carrée générique et bornée A, les fluctuations de la quantité tr f (X)A sont asymptotiquement gaussiennes et comportent deux modes indépendants, correspondant aux composantes traciale et de trace nulle de A. Une nouvelle formule est établie pour la variance de la composante de trace nulle, qui fait intervenir la norme de Frobenius de A et la norme L2 de f sur la frontière du spectre limite."}],"page":"2083-2105","article_type":"original","citation":{"chicago":"Erdös, László, and Hong Chang Ji. “Functional CLT for Non-Hermitian Random Matrices.” Annales de l’institut Henri Poincare (B) Probability and Statistics. Institute of Mathematical Statistics, 2023. https://doi.org/10.1214/22-AIHP1304.","mla":"Erdös, László, and Hong Chang Ji. “Functional CLT for Non-Hermitian Random Matrices.” Annales de l’institut Henri Poincare (B) Probability and Statistics, vol. 59, no. 4, Institute of Mathematical Statistics, 2023, pp. 2083–105, doi:10.1214/22-AIHP1304.","short":"L. Erdös, H.C. Ji, Annales de l’institut Henri Poincare (B) Probability and Statistics 59 (2023) 2083–2105.","ista":"Erdös L, Ji HC. 2023. Functional CLT for non-Hermitian random matrices. Annales de l’institut Henri Poincare (B) Probability and Statistics. 59(4), 2083–2105.","ieee":"L. Erdös and H. C. Ji, “Functional CLT for non-Hermitian random matrices,” Annales de l’institut Henri Poincare (B) Probability and Statistics, vol. 59, no. 4. Institute of Mathematical Statistics, pp. 2083–2105, 2023.","apa":"Erdös, L., & Ji, H. C. (2023). Functional CLT for non-Hermitian random matrices. Annales de l’institut Henri Poincare (B) Probability and Statistics. Institute of Mathematical Statistics. https://doi.org/10.1214/22-AIHP1304","ama":"Erdös L, Ji HC. Functional CLT for non-Hermitian random matrices. Annales de l’institut Henri Poincare (B) Probability and Statistics. 2023;59(4):2083-2105. doi:10.1214/22-AIHP1304"},"publication":"Annales de l'institut Henri Poincare (B) Probability and Statistics","date_published":"2023-11-01T00:00:00Z","scopus_import":"1","article_processing_charge":"No","day":"01","publisher":"Institute of Mathematical Statistics","department":[{"_id":"LaEr"}],"publication_status":"published","year":"2023","acknowledgement":"The first author was partially supported by ERC Advanced Grant “RMTBeyond” No. 101020331. The second author was supported by ERC Advanced Grant “RMTBeyond” No. 101020331.\r\nThe authors are grateful to the anonymous referees and associated editor for carefully reading this paper and providing helpful comments that improved the quality of the article. Also the authors would like to thank Peter Forrester for pointing out the reference [12] that was absent in the previous version of the manuscript.","volume":59,"date_created":"2023-12-10T23:01:00Z","date_updated":"2023-12-11T12:36:56Z","author":[{"last_name":"Erdös","first_name":"László","orcid":"0000-0001-5366-9603","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","full_name":"Erdös, László"},{"first_name":"Hong Chang","last_name":"Ji","id":"dd216c0a-c1f9-11eb-beaf-e9ea9d2de76d","full_name":"Ji, Hong Chang"}],"ec_funded":1,"project":[{"name":"Random matrices beyond Wigner-Dyson-Mehta","call_identifier":"H2020","grant_number":"101020331","_id":"62796744-2b32-11ec-9570-940b20777f1d"}],"quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2112.11382"}],"external_id":{"arxiv":["2112.11382"]},"oa":1,"language":[{"iso":"eng"}],"doi":"10.1214/22-AIHP1304","publication_identifier":{"issn":["0246-0203"]},"month":"11"},{"article_type":"original","page":"1045-1055","publication":"Journal of Spectral Theory","citation":{"ama":"Seiringer R. Absence of excited eigenvalues for Fröhlich type polaron models at weak coupling. Journal of Spectral Theory. 2023;13(3):1045-1055. doi:10.4171/JST/469","apa":"Seiringer, R. (2023). Absence of excited eigenvalues for Fröhlich type polaron models at weak coupling. Journal of Spectral Theory. EMS Press. https://doi.org/10.4171/JST/469","ieee":"R. Seiringer, “Absence of excited eigenvalues for Fröhlich type polaron models at weak coupling,” Journal of Spectral Theory, vol. 13, no. 3. EMS Press, pp. 1045–1055, 2023.","ista":"Seiringer R. 2023. Absence of excited eigenvalues for Fröhlich type polaron models at weak coupling. Journal of Spectral Theory. 13(3), 1045–1055.","short":"R. Seiringer, Journal of Spectral Theory 13 (2023) 1045–1055.","mla":"Seiringer, Robert. “Absence of Excited Eigenvalues for Fröhlich Type Polaron Models at Weak Coupling.” Journal of Spectral Theory, vol. 13, no. 3, EMS Press, 2023, pp. 1045–55, doi:10.4171/JST/469.","chicago":"Seiringer, Robert. “Absence of Excited Eigenvalues for Fröhlich Type Polaron Models at Weak Coupling.” Journal of Spectral Theory. EMS Press, 2023. https://doi.org/10.4171/JST/469."},"date_published":"2023-11-25T00:00:00Z","scopus_import":"1","day":"25","article_processing_charge":"Yes","has_accepted_license":"1","status":"public","ddc":["510"],"title":"Absence of excited eigenvalues for Fröhlich type polaron models at weak coupling","intvolume":" 13","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14662","file":[{"file_id":"14677","relation":"main_file","success":1,"checksum":"9ce96ca87d56ea9a70d2eb9a32839f8d","date_updated":"2023-12-11T12:03:12Z","date_created":"2023-12-11T12:03:12Z","access_level":"open_access","file_name":"2023_JST_Seiringer.pdf","creator":"dernst","file_size":201513,"content_type":"application/pdf"}],"oa_version":"None","type":"journal_article","abstract":[{"lang":"eng","text":"We consider a class of polaron models, including the Fröhlich model, at zero total\r\nmomentum, and show that at sufficiently weak coupling there are no excited eigenvalues below\r\nthe essential spectrum."}],"issue":"3","quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"arxiv":["2210.17123"]},"oa":1,"language":[{"iso":"eng"}],"doi":"10.4171/JST/469","month":"11","publication_identifier":{"eissn":["1664-0403"],"issn":["1664-039X"]},"publication_status":"published","department":[{"_id":"RoSe"}],"publisher":"EMS Press","year":"2023","date_created":"2023-12-10T23:00:59Z","date_updated":"2023-12-11T12:12:14Z","volume":13,"author":[{"first_name":"Robert","last_name":"Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6781-0521","full_name":"Seiringer, Robert"}],"file_date_updated":"2023-12-11T12:03:12Z"},{"date_created":"2023-12-10T23:00:56Z","date_updated":"2023-12-12T08:22:23Z","volume":674,"oa_version":"None","author":[{"full_name":"Gupta, Shyam Lal","last_name":"Gupta","first_name":"Shyam Lal"},{"full_name":"Singh, Saurabh","id":"12d625da-9cb3-11ed-9667-af09d37d3f0a","orcid":"0000-0003-2209-5269","first_name":"Saurabh","last_name":"Singh"},{"full_name":"Kumar, Sumit","first_name":"Sumit","last_name":"Kumar"},{"full_name":"Anupam, Unknown","first_name":"Unknown","last_name":"Anupam"},{"last_name":"Thakur","first_name":"Samjeet Singh","full_name":"Thakur, Samjeet Singh"},{"full_name":"Kumar, Ashish","first_name":"Ashish","last_name":"Kumar"},{"full_name":"Panwar, Sanjay","last_name":"Panwar","first_name":"Sanjay"},{"last_name":"Diwaker","first_name":"D.","full_name":"Diwaker, D."}],"title":"Ab-initio stability of Iridium based newly proposed full and quaternary heusler alloys","publication_status":"epub_ahead","status":"public","publisher":"Elsevier","department":[{"_id":"MaIb"}],"intvolume":" 674","year":"2023","_id":"14652","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"text":"In order to demonstrate the stability of newly proposed iridium-based Ir2Cr(In,Sn) and IrRhCr(In,Sn) heusler alloys, we present ab-initio analysis of these alloys by examining various properties to prove their stability. The stability of these alloys can be inferred from different cohesive and formation energies as well as positive phonon frequencies. Their electronic structure results indicate that they are semi-metals in nature. The magnetic moments are computed using the Slater-Pauling formula and exhibit a high value, with the Cr atom contributing the most in all alloys. Mulliken’s charge analysis results show that our alloys contain a range of linkages, mainly ionic and covalent ones. The ductility and mechanical stability of these alloys are confirmed by elastic constants viz. Poisson’s ratio, Pugh’s ratio, and many different types of elastic moduli.","lang":"eng"}],"article_number":"415539","type":"journal_article","language":[{"iso":"eng"}],"doi":"10.1016/j.physb.2023.415539","date_published":"2023-11-28T00:00:00Z","quality_controlled":"1","article_type":"original","publication":"Physica B: Condensed Matter","citation":{"mla":"Gupta, Shyam Lal, et al. “Ab-Initio Stability of Iridium Based Newly Proposed Full and Quaternary Heusler Alloys.” Physica B: Condensed Matter, vol. 674, 415539, Elsevier, 2023, doi:10.1016/j.physb.2023.415539.","short":"S.L. Gupta, S. Singh, S. Kumar, U. Anupam, S.S. Thakur, A. Kumar, S. Panwar, D. Diwaker, Physica B: Condensed Matter 674 (2023).","chicago":"Gupta, Shyam Lal, Saurabh Singh, Sumit Kumar, Unknown Anupam, Samjeet Singh Thakur, Ashish Kumar, Sanjay Panwar, and D. Diwaker. “Ab-Initio Stability of Iridium Based Newly Proposed Full and Quaternary Heusler Alloys.” Physica B: Condensed Matter. Elsevier, 2023. https://doi.org/10.1016/j.physb.2023.415539.","ama":"Gupta SL, Singh S, Kumar S, et al. Ab-initio stability of Iridium based newly proposed full and quaternary heusler alloys. Physica B: Condensed Matter. 2023;674. doi:10.1016/j.physb.2023.415539","ista":"Gupta SL, Singh S, Kumar S, Anupam U, Thakur SS, Kumar A, Panwar S, Diwaker D. 2023. Ab-initio stability of Iridium based newly proposed full and quaternary heusler alloys. Physica B: Condensed Matter. 674, 415539.","ieee":"S. L. Gupta et al., “Ab-initio stability of Iridium based newly proposed full and quaternary heusler alloys,” Physica B: Condensed Matter, vol. 674. Elsevier, 2023.","apa":"Gupta, S. L., Singh, S., Kumar, S., Anupam, U., Thakur, S. S., Kumar, A., … Diwaker, D. (2023). Ab-initio stability of Iridium based newly proposed full and quaternary heusler alloys. Physica B: Condensed Matter. Elsevier. https://doi.org/10.1016/j.physb.2023.415539"},"day":"28","month":"11","article_processing_charge":"No","publication_identifier":{"issn":["0921-4526"]},"scopus_import":"1"},{"month":"10","publication_identifier":{"eissn":["2589-0042"]},"doi":"10.1016/j.isci.2023.107840","language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"pmid":["37766992"],"isi":["001082331200001"]},"oa":1,"isi":1,"quality_controlled":"1","project":[{"grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020"},{"grant_number":"M03318","_id":"eb943429-77a9-11ec-83b8-9f471cdf5c67","name":"Functional Advantages of Critical Brain Dynamics"}],"file_date_updated":"2023-10-09T07:23:46Z","ec_funded":1,"author":[{"full_name":"Scarpetta, Silvia","last_name":"Scarpetta","first_name":"Silvia"},{"last_name":"Morrisi","first_name":"Niccolò","full_name":"Morrisi, Niccolò"},{"full_name":"Mutti, Carlotta","first_name":"Carlotta","last_name":"Mutti"},{"first_name":"Nicoletta","last_name":"Azzi","full_name":"Azzi, Nicoletta"},{"last_name":"Trippi","first_name":"Irene","full_name":"Trippi, Irene"},{"first_name":"Rosario","last_name":"Ciliento","full_name":"Ciliento, Rosario"},{"last_name":"Apicella","first_name":"Ilenia","full_name":"Apicella, Ilenia"},{"full_name":"Messuti, Giovanni","first_name":"Giovanni","last_name":"Messuti"},{"last_name":"Angiolelli","first_name":"Marianna","full_name":"Angiolelli, Marianna"},{"first_name":"Fabrizio","last_name":"Lombardi","id":"A057D288-3E88-11E9-986D-0CF4E5697425","orcid":"0000-0003-2623-5249","full_name":"Lombardi, Fabrizio"},{"last_name":"Parrino","first_name":"Liborio","full_name":"Parrino, Liborio"},{"full_name":"Vaudano, Anna Elisabetta","last_name":"Vaudano","first_name":"Anna Elisabetta"}],"date_updated":"2023-12-13T11:11:24Z","date_created":"2023-02-02T10:50:17Z","volume":26,"year":"2023","acknowledgement":"FL acknowledges support from the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie Grant Agreement No. 754411, and from the Austrian Science Fund (FWF) under the Lise Meitner fellowship No. PT1013M03318. IA acknowledges financial support from the MIUR PRIN 2017WZFTZP.","pmid":1,"publication_status":"published","publisher":"Elsevier","department":[{"_id":"GaTk"}],"day":"20","has_accepted_license":"1","article_processing_charge":"Yes","scopus_import":"1","date_published":"2023-10-20T00:00:00Z","publication":"iScience","citation":{"chicago":"Scarpetta, Silvia, Niccolò Morrisi, Carlotta Mutti, Nicoletta Azzi, Irene Trippi, Rosario Ciliento, Ilenia Apicella, et al. “Criticality of Neuronal Avalanches in Human Sleep and Their Relationship with Sleep Macro- and Micro-Architecture.” IScience. Elsevier, 2023. https://doi.org/10.1016/j.isci.2023.107840.","mla":"Scarpetta, Silvia, et al. “Criticality of Neuronal Avalanches in Human Sleep and Their Relationship with Sleep Macro- and Micro-Architecture.” IScience, vol. 26, no. 10, Elsevier, 2023, p. 107840, doi:10.1016/j.isci.2023.107840.","short":"S. Scarpetta, N. Morrisi, C. Mutti, N. Azzi, I. Trippi, R. Ciliento, I. Apicella, G. Messuti, M. Angiolelli, F. Lombardi, L. Parrino, A.E. Vaudano, IScience 26 (2023) 107840.","ista":"Scarpetta S, Morrisi N, Mutti C, Azzi N, Trippi I, Ciliento R, Apicella I, Messuti G, Angiolelli M, Lombardi F, Parrino L, Vaudano AE. 2023. Criticality of neuronal avalanches in human sleep and their relationship with sleep macro- and micro-architecture. iScience. 26(10), 107840.","apa":"Scarpetta, S., Morrisi, N., Mutti, C., Azzi, N., Trippi, I., Ciliento, R., … Vaudano, A. E. (2023). Criticality of neuronal avalanches in human sleep and their relationship with sleep macro- and micro-architecture. IScience. Elsevier. https://doi.org/10.1016/j.isci.2023.107840","ieee":"S. Scarpetta et al., “Criticality of neuronal avalanches in human sleep and their relationship with sleep macro- and micro-architecture,” iScience, vol. 26, no. 10. Elsevier, p. 107840, 2023.","ama":"Scarpetta S, Morrisi N, Mutti C, et al. Criticality of neuronal avalanches in human sleep and their relationship with sleep macro- and micro-architecture. iScience. 2023;26(10):107840. doi:10.1016/j.isci.2023.107840"},"article_type":"original","page":"107840","abstract":[{"text":"Sleep plays a key role in preserving brain function, keeping the brain network in a state that ensures optimal computational capabilities. Empirical evidence indicates that such a state is consistent with criticality, where scale-free neuronal avalanches emerge. However, the relationship between sleep, emergent avalanches, and criticality remains poorly understood. Here we fully characterize the critical behavior of avalanches during sleep, and study their relationship with the sleep macro- and micro-architecture, in particular the cyclic alternating pattern (CAP). We show that avalanche size and duration distributions exhibit robust power laws with exponents approximately equal to −3/2 e −2, respectively. Importantly, we find that sizes scale as a power law of the durations, and that all critical exponents for neuronal avalanches obey robust scaling relations, which are consistent with the mean-field directed percolation universality class. Our analysis demonstrates that avalanche dynamics depends on the position within the NREM-REM cycles, with the avalanche density increasing in the descending phases and decreasing in the ascending phases of sleep cycles. Moreover, we show that, within NREM sleep, avalanche occurrence correlates with CAP activation phases, particularly A1, which are the expression of slow wave sleep propensity and have been proposed to be beneficial for cognitive processes. The results suggest that neuronal avalanches, and thus tuning to criticality, actively contribute to sleep development and play a role in preserving network function. Such findings, alongside characterization of the universality class for avalanches, open new avenues to the investigation of functional role of criticality during sleep with potential clinical application.Significance statementWe fully characterize the critical behavior of neuronal avalanches during sleep, and show that avalanches follow precise scaling laws that are consistent with the mean-field directed percolation universality class. The analysis provides first evidence of a functional relationship between avalanche occurrence, slow-wave sleep dynamics, sleep stage transitions and occurrence of CAP phase A during NREM sleep. Because CAP is considered one of the major guardians of NREM sleep that allows the brain to dynamically react to external perturbation and contributes to the cognitive consolidation processes occurring in sleep, our observations suggest that neuronal avalanches at criticality are associated with flexible response to external inputs and to cognitive processes, a key assumption of the critical brain hypothesis.","lang":"eng"}],"issue":"10","type":"journal_article","file":[{"content_type":"application/pdf","file_size":4872708,"creator":"dernst","file_name":"2023_iScience_Scarpetta.pdf","access_level":"open_access","date_created":"2023-10-09T07:23:46Z","date_updated":"2023-10-09T07:23:46Z","checksum":"f499836af172ecc9865de4bb41fa99d1","success":1,"relation":"main_file","file_id":"14412"}],"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12487","title":"Criticality of neuronal avalanches in human sleep and their relationship with sleep macro- and micro-architecture","status":"public","ddc":["570"],"intvolume":" 26"},{"article_number":"37","file_date_updated":"2023-08-14T07:51:47Z","ec_funded":1,"publication_status":"published","department":[{"_id":"SyCr"}],"publisher":"Springer Nature","acknowledgement":"We are thankful to Mike Bidochka for the fungal strain, Lukas Schrader for sharing the C. obscurior genome data for primer development, the Lab Support Facility of ISTA for general laboratory support and help with the permit approval procedures, and the Finca El Quinto for letting us collect ants on their property. We thank the Social Immunity Team at ISTA for help with ant collection and experimental help, in particular Elina Hanhimäki and Marta Gorecka for behavioural observation, and Elisabeth Naderlinger for spore load PCRs. We further thank the Social Immunity Team and Jürgen Heinze for continued discussion and comments on the manuscript.\r\nOpen access funding provided by Institute of Science and Technology Austria (ISTA). This project received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 771402 to SC). ","year":"2023","pmid":1,"date_created":"2023-02-28T07:38:17Z","date_updated":"2023-12-13T11:13:14Z","volume":23,"author":[{"full_name":"Metzler, Sina","last_name":"Metzler","first_name":"Sina","orcid":"0000-0002-9547-2494","id":"48204546-F248-11E8-B48F-1D18A9856A87"},{"id":"21516227-15aa-11ec-9fb2-c6e8ffc155d3","first_name":"Jessica","last_name":"Kirchner","full_name":"Kirchner, Jessica"},{"full_name":"Grasse, Anna V","id":"406F989C-F248-11E8-B48F-1D18A9856A87","first_name":"Anna V","last_name":"Grasse"},{"first_name":"Sylvia","last_name":"Cremer","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2193-3868","full_name":"Cremer, Sylvia"}],"related_material":{"record":[{"status":"public","relation":"research_data","id":"12693"}]},"month":"08","publication_identifier":{"issn":["2730-7182"]},"quality_controlled":"1","isi":1,"project":[{"_id":"2649B4DE-B435-11E9-9278-68D0E5697425","grant_number":"771402","name":"Epidemics in ant societies on a chip","call_identifier":"H2020"}],"external_id":{"isi":["001042643600002"],"pmid":["37550612"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"acknowledged_ssus":[{"_id":"LifeSc"}],"language":[{"iso":"eng"}],"doi":"10.1186/s12862-023-02137-7","type":"journal_article","abstract":[{"lang":"eng","text":"Background: Fighting disease while fighting rivals exposes males to constraints and tradeoffs during male-male competition. We here tested how both the stage and intensity of infection with the fungal pathogen Metarhizium robertsii interfered with fighting success in Cardiocondyla obscurior ant males. Males of this species have evolved long lifespans during which they can gain many matings with the young queens of the colony, if successful in male-male competition. Since male fights occur inside the colony, the outcome of male-male competition can further be biased by interference of the colony’s worker force.\r\nResults: We found that severe, but not yet mild, infection strongly impaired male fighting success. In late-stage infection, this could be attributed to worker aggression directed towards the infected rather than the healthy male and an already very high male morbidity even in the absence of fighting. Shortly after pathogen exposure, however, male mortality was particularly increased during combat. Since these males mounted a strong immune response, their reduced fighting success suggests a trade-off between immune investment and competitive ability already early in the infection. Even if the males themselves showed no difference in the number of attacks they raised against their healthy rivals across infection stages and levels, severely infected males were thus losing in male-male competition from an early stage of infection on.\r\nConclusions: Males of the ant C. obscurior have evolved high immune investment, triggering an effective immune response very fast after fungal exposure. This allows them to cope with mild pathogen exposures without cost to their success in male-male competition, and hence to gain multiple mating opportunities with the emerging virgin queens of the colony. Under severe infection, however, they are weak fighters and rarely survive a combat already at early infection when raising an immune response, as well as at progressed infection, when they are morbid and preferentially targeted by worker aggression. Workers thereby remove males that pose a future disease threat by biasing male-male competition. Our study thus revealed a novel social immunity mechanism how social insect workers protect the colony against disease risk."}],"status":"public","ddc":["570"],"title":"Trade-offs between immunity and competitive ability in fighting ant males","intvolume":" 23","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12696","oa_version":"Published Version","file":[{"content_type":"application/pdf","file_size":2004276,"creator":"dernst","access_level":"open_access","file_name":"2023_BMCEcology_Metzler.pdf","checksum":"95966dc7d242d2c85bdd4fe14233dbd8","success":1,"date_created":"2023-08-14T07:51:47Z","date_updated":"2023-08-14T07:51:47Z","relation":"main_file","file_id":"14048"}],"scopus_import":"1","day":"07","article_processing_charge":"Yes","has_accepted_license":"1","article_type":"original","publication":"BMC Ecology and Evolution","citation":{"ista":"Metzler S, Kirchner J, Grasse AV, Cremer S. 2023. Trade-offs between immunity and competitive ability in fighting ant males. BMC Ecology and Evolution. 23, 37.","apa":"Metzler, S., Kirchner, J., Grasse, A. V., & Cremer, S. (2023). Trade-offs between immunity and competitive ability in fighting ant males. BMC Ecology and Evolution. Springer Nature. https://doi.org/10.1186/s12862-023-02137-7","ieee":"S. Metzler, J. Kirchner, A. V. Grasse, and S. Cremer, “Trade-offs between immunity and competitive ability in fighting ant males,” BMC Ecology and Evolution, vol. 23. Springer Nature, 2023.","ama":"Metzler S, Kirchner J, Grasse AV, Cremer S. Trade-offs between immunity and competitive ability in fighting ant males. BMC Ecology and Evolution. 2023;23. doi:10.1186/s12862-023-02137-7","chicago":"Metzler, Sina, Jessica Kirchner, Anna V Grasse, and Sylvia Cremer. “Trade-Offs between Immunity and Competitive Ability in Fighting Ant Males.” BMC Ecology and Evolution. Springer Nature, 2023. https://doi.org/10.1186/s12862-023-02137-7.","mla":"Metzler, Sina, et al. “Trade-Offs between Immunity and Competitive Ability in Fighting Ant Males.” BMC Ecology and Evolution, vol. 23, 37, Springer Nature, 2023, doi:10.1186/s12862-023-02137-7.","short":"S. Metzler, J. Kirchner, A.V. Grasse, S. Cremer, BMC Ecology and Evolution 23 (2023)."},"date_published":"2023-08-07T00:00:00Z"},{"article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","day":"04","scopus_import":"1","date_published":"2023-12-04T00:00:00Z","page":"1120-1127","article_type":"original","citation":{"apa":"Salerno, F., Guyennon, N., Yang, K., Shaw, T., Lin, C., Colombo, N., … Pellicciotti, F. (2023). Local cooling and drying induced by Himalayan glaciers under global warming. Nature Geoscience. Springer Nature. https://doi.org/10.1038/s41561-023-01331-y","ieee":"F. Salerno et al., “Local cooling and drying induced by Himalayan glaciers under global warming,” Nature Geoscience, vol. 16. Springer Nature, pp. 1120–1127, 2023.","ista":"Salerno F, Guyennon N, Yang K, Shaw T, Lin C, Colombo N, Romano E, Gruber S, Bolch T, Alessandri A, Cristofanelli P, Putero D, Diolaiuti G, Tartari G, Verza G, Thakuri S, Balsamo G, Miles ES, Pellicciotti F. 2023. Local cooling and drying induced by Himalayan glaciers under global warming. Nature Geoscience. 16, 1120–1127.","ama":"Salerno F, Guyennon N, Yang K, et al. Local cooling and drying induced by Himalayan glaciers under global warming. Nature Geoscience. 2023;16:1120-1127. doi:10.1038/s41561-023-01331-y","chicago":"Salerno, Franco, Nicolas Guyennon, Kun Yang, Thomas Shaw, Changgui Lin, Nicola Colombo, Emanuele Romano, et al. “Local Cooling and Drying Induced by Himalayan Glaciers under Global Warming.” Nature Geoscience. Springer Nature, 2023. https://doi.org/10.1038/s41561-023-01331-y.","short":"F. Salerno, N. Guyennon, K. Yang, T. Shaw, C. Lin, N. Colombo, E. Romano, S. Gruber, T. Bolch, A. Alessandri, P. Cristofanelli, D. Putero, G. Diolaiuti, G. Tartari, G. Verza, S. Thakuri, G. Balsamo, E.S. Miles, F. Pellicciotti, Nature Geoscience 16 (2023) 1120–1127.","mla":"Salerno, Franco, et al. “Local Cooling and Drying Induced by Himalayan Glaciers under Global Warming.” Nature Geoscience, vol. 16, Springer Nature, 2023, pp. 1120–27, doi:10.1038/s41561-023-01331-y."},"publication":"Nature Geoscience","abstract":[{"lang":"eng","text":"Understanding the response of Himalayan glaciers to global warming is vital because of their role as a water source for the Asian subcontinent. However, great uncertainties still exist on the climate drivers of past and present glacier changes across scales. Here, we analyse continuous hourly climate station data from a glacierized elevation (Pyramid station, Mount Everest) since 1994 together with other ground observations and climate reanalysis. We show that a decrease in maximum air temperature and precipitation occurred during the last three decades at Pyramid in response to global warming. Reanalysis data suggest a broader occurrence of this effect in the glacierized areas of the Himalaya. We hypothesize that the counterintuitive cooling is caused by enhanced sensible heat exchange and the associated increase in glacier katabatic wind, which draws cool air downward from higher elevations. The stronger katabatic winds have also lowered the elevation of local wind convergence, thereby diminishing precipitation in glacial areas and negatively affecting glacier mass balance. This local cooling may have partially preserved glaciers from melting and could help protect the periglacial environment."}],"type":"journal_article","file":[{"relation":"main_file","file_id":"14671","checksum":"d5ae0d17069eebc6f454c8608cf83e21","success":1,"date_created":"2023-12-11T10:11:19Z","date_updated":"2023-12-11T10:11:19Z","access_level":"open_access","file_name":"2023_NatureGeoscience_Salerno.pdf","file_size":6072603,"content_type":"application/pdf","creator":"dernst"}],"oa_version":"Published Version","intvolume":" 16","status":"public","title":"Local cooling and drying induced by Himalayan glaciers under global warming","ddc":["550"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14659","publication_identifier":{"eissn":["1752-0908"],"issn":["1752-0894"]},"month":"12","language":[{"iso":"eng"}],"doi":"10.1038/s41561-023-01331-y","quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"file_date_updated":"2023-12-11T10:11:19Z","volume":16,"date_created":"2023-12-10T23:00:58Z","date_updated":"2023-12-13T11:01:10Z","related_material":{"link":[{"relation":"press_release","description":"News on ISTA website","url":"https://ista.ac.at/en/news/wind-of-climate-change/"}]},"author":[{"first_name":"Franco","last_name":"Salerno","full_name":"Salerno, Franco"},{"last_name":"Guyennon","first_name":"Nicolas","full_name":"Guyennon, Nicolas"},{"last_name":"Yang","first_name":"Kun","full_name":"Yang, Kun"},{"full_name":"Shaw, Thomas","id":"3caa3f91-1f03-11ee-96ce-e0e553054d6e","orcid":"0000-0001-7640-6152","first_name":"Thomas","last_name":"Shaw"},{"first_name":"Changgui","last_name":"Lin","full_name":"Lin, Changgui"},{"full_name":"Colombo, Nicola","first_name":"Nicola","last_name":"Colombo"},{"last_name":"Romano","first_name":"Emanuele","full_name":"Romano, Emanuele"},{"full_name":"Gruber, Stephan","first_name":"Stephan","last_name":"Gruber"},{"full_name":"Bolch, Tobias","first_name":"Tobias","last_name":"Bolch"},{"full_name":"Alessandri, Andrea","first_name":"Andrea","last_name":"Alessandri"},{"first_name":"Paolo","last_name":"Cristofanelli","full_name":"Cristofanelli, Paolo"},{"full_name":"Putero, Davide","last_name":"Putero","first_name":"Davide"},{"full_name":"Diolaiuti, Guglielmina","last_name":"Diolaiuti","first_name":"Guglielmina"},{"full_name":"Tartari, Gianni","last_name":"Tartari","first_name":"Gianni"},{"last_name":"Verza","first_name":"Gianpietro","full_name":"Verza, Gianpietro"},{"full_name":"Thakuri, Sudeep","first_name":"Sudeep","last_name":"Thakuri"},{"last_name":"Balsamo","first_name":"Gianpaolo","full_name":"Balsamo, Gianpaolo"},{"last_name":"Miles","first_name":"Evan S.","full_name":"Miles, Evan S."},{"full_name":"Pellicciotti, Francesca","first_name":"Francesca","last_name":"Pellicciotti","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","orcid":"0000-0002-5554-8087"}],"department":[{"_id":"FrPe"}],"publisher":"Springer Nature","publication_status":"published","year":"2023","acknowledgement":"This work was carried out within the framework of the EV-K2-CNR and Nepal Academy of Science and Technology. K.Y. was supported by the Second Tibetan Plateau Scientific Expedition and Research Program (grant no. 2019QZKK0206). N.C. was supported by the project NODES, which has received funding from the MUR–M4C2 1.5 of PNRR funded by the European Union - NextGeneration EU (Grant agreement no. ECS00000036). T.E.S. has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant no. 101026058. F.P. has received funding from the European Research Council under the European Union’s Horizon 2020 research and innovation programme grant no. 772751, RAVEN, ‘Rapid mass losses of debris-covered glaciers in High Mountain Asia’ and has been supported by the SNSF grant ‘High-elevation precipitation in High Mountain Asia’ (grant no. 183633). A.A. was supported by the European Union’s Horizon 2020 research and innovation program under grant agreement no. 101004156 (CONFESS project) and by the European Union’s Horizon Europe research and innovation program under grant agreement no. 101081193 (OptimESM project). We thank H. Wehrli for valuable comments and suggestions and J. Giannitrapani for the graphic support. We thank A. Da Polenza and K. Bista of EV-K2-CNR for believing that studying the high elevations is relevant for the whole globe."},{"language":[{"iso":"eng"}],"doi":"10.1038/s41467-023-37259-5","isi":1,"quality_controlled":"1","external_id":{"isi":["001066658700003"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"publication_identifier":{"eissn":["2041-1723"]},"month":"03","volume":14,"date_created":"2023-04-02T22:01:09Z","date_updated":"2023-12-13T11:15:58Z","author":[{"full_name":"Zhang, Danyang","last_name":"Zhang","first_name":"Danyang"},{"first_name":"Remigijus","last_name":"Lape","full_name":"Lape, Remigijus"},{"last_name":"Shaikh","first_name":"Saher A.","full_name":"Shaikh, Saher A."},{"first_name":"Bianka K.","last_name":"Kohegyi","full_name":"Kohegyi, Bianka K."},{"full_name":"Watson, Jake","orcid":"0000-0002-8698-3823","id":"63836096-4690-11EA-BD4E-32803DDC885E","last_name":"Watson","first_name":"Jake"},{"first_name":"Ondrej","last_name":"Cais","full_name":"Cais, Ondrej"},{"last_name":"Nakagawa","first_name":"Terunaga","full_name":"Nakagawa, Terunaga"},{"full_name":"Greger, Ingo H.","last_name":"Greger","first_name":"Ingo H."}],"department":[{"_id":"PeJo"}],"publisher":"Springer Nature","publication_status":"published","acknowledgement":"We thank James Krieger for generating the ‘proDy’ interaction maps in Fig. 5B and S7C, and Jan-Niklas Dohrke for critically reading the manuscript. We thank members of the Greger lab for insightful comments during this study. We acknowledge Trevor Rutherford for confirming ligand integrity by NMR. We are also grateful to LMB scientific computing and the EM facility for their support. This research was funded in part by the Wellcome Trust (223194/Z/21/Z) to I.H.G. For the purpose of Open Access, the MRC Laboratory of Molecular Biology has applied a CC BY public copyright licence to any Author Accepted Manuscript (AAM) version arising from this submission. Further funding came from the Medical Research Council (MRU105174197) to I.H.G, and NIH grant (R56/R01MH123474) to T.N.","year":"2023","file_date_updated":"2023-04-03T06:38:56Z","article_number":"1659","date_published":"2023-03-25T00:00:00Z","article_type":"original","citation":{"ama":"Zhang D, Lape R, Shaikh SA, et al. Modulatory mechanisms of TARP γ8-selective AMPA receptor therapeutics. Nature Communications. 2023;14. doi:10.1038/s41467-023-37259-5","ista":"Zhang D, Lape R, Shaikh SA, Kohegyi BK, Watson J, Cais O, Nakagawa T, Greger IH. 2023. Modulatory mechanisms of TARP γ8-selective AMPA receptor therapeutics. Nature Communications. 14, 1659.","apa":"Zhang, D., Lape, R., Shaikh, S. A., Kohegyi, B. K., Watson, J., Cais, O., … Greger, I. H. (2023). Modulatory mechanisms of TARP γ8-selective AMPA receptor therapeutics. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-023-37259-5","ieee":"D. Zhang et al., “Modulatory mechanisms of TARP γ8-selective AMPA receptor therapeutics,” Nature Communications, vol. 14. Springer Nature, 2023.","mla":"Zhang, Danyang, et al. “Modulatory Mechanisms of TARP Γ8-Selective AMPA Receptor Therapeutics.” Nature Communications, vol. 14, 1659, Springer Nature, 2023, doi:10.1038/s41467-023-37259-5.","short":"D. Zhang, R. Lape, S.A. Shaikh, B.K. Kohegyi, J. Watson, O. Cais, T. Nakagawa, I.H. Greger, Nature Communications 14 (2023).","chicago":"Zhang, Danyang, Remigijus Lape, Saher A. Shaikh, Bianka K. Kohegyi, Jake Watson, Ondrej Cais, Terunaga Nakagawa, and Ingo H. Greger. “Modulatory Mechanisms of TARP Γ8-Selective AMPA Receptor Therapeutics.” Nature Communications. Springer Nature, 2023. https://doi.org/10.1038/s41467-023-37259-5."},"publication":"Nature Communications","article_processing_charge":"No","has_accepted_license":"1","day":"25","scopus_import":"1","oa_version":"Published Version","file":[{"content_type":"application/pdf","file_size":2613996,"creator":"dernst","file_name":"2023_NatureComm_Zhang.pdf","access_level":"open_access","date_created":"2023-04-03T06:38:56Z","date_updated":"2023-04-03T06:38:56Z","checksum":"0a97b31191432dae5853bbb5ccb7698d","success":1,"relation":"main_file","file_id":"12797"}],"intvolume":" 14","title":"Modulatory mechanisms of TARP γ8-selective AMPA receptor therapeutics","status":"public","ddc":["570"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12786","abstract":[{"lang":"eng","text":"AMPA glutamate receptors (AMPARs) mediate excitatory neurotransmission throughout the brain. Their signalling is uniquely diversified by brain region-specific auxiliary subunits, providing an opportunity for the development of selective therapeutics. AMPARs associated with TARP γ8 are enriched in the hippocampus, and are targets of emerging anti-epileptic drugs. To understand their therapeutic activity, we determined cryo-EM structures of the GluA1/2-γ8 receptor associated with three potent, chemically diverse ligands. We find that despite sharing a lipid-exposed and water-accessible binding pocket, drug action is differentially affected by binding-site mutants. Together with patch-clamp recordings and MD simulations we also demonstrate that ligand-triggered reorganisation of the AMPAR-TARP interface contributes to modulation. Unexpectedly, one ligand (JNJ-61432059) acts bifunctionally, negatively affecting GluA1 but exerting positive modulatory action on GluA2-containing AMPARs, in a TARP stoichiometry-dependent manner. These results further illuminate the action of TARPs, demonstrate the sensitive balance between positive and negative modulatory action, and provide a mechanistic platform for development of both positive and negative selective AMPAR modulators."}],"type":"journal_article"},{"title":"Source data for Metzler et al, 2023: Trade-offs between immunity and competitive ability in fighting ant males ","status":"public","ddc":["570"],"department":[{"_id":"SyCr"}],"publisher":"Institute of Science and Technology Austria","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12693","year":"2023","date_created":"2023-02-28T06:38:37Z","date_updated":"2023-12-13T11:13:13Z","oa_version":"Published Version","file":[{"date_updated":"2023-02-28T06:34:08Z","date_created":"2023-02-28T06:34:08Z","success":1,"checksum":"c1565d655ca05601acfd84e0d12b8563","file_id":"12694","relation":"main_file","creator":"scremer","content_type":"application/pdf","file_size":77070,"file_name":"Metzler_ReadMe.pdf","access_level":"open_access"},{"access_level":"open_access","file_name":"Metzler_RepositoryData.xlsx","creator":"scremer","content_type":"application/vnd.openxmlformats-officedocument.spreadsheetml.sheet","file_size":88001,"file_id":"12695","relation":"main_file","success":1,"checksum":"75c4c4948563d6261cb7548f80d909f1","date_created":"2023-02-28T06:34:12Z","date_updated":"2023-02-28T06:34:12Z"}],"author":[{"full_name":"Cremer, Sylvia","last_name":"Cremer","first_name":"Sylvia","orcid":"0000-0002-2193-3868","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87"}],"related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"12696"}]},"contributor":[{"contributor_type":"data_collector","last_name":"Metzler","first_name":"Sina","id":"48204546-F248-11E8-B48F-1D18A9856A87"},{"id":"21516227-15aa-11ec-9fb2-c6e8ffc155d3","first_name":"Jessica","contributor_type":"data_collector","last_name":"Kirchner"},{"last_name":"Grasse","contributor_type":"data_collector","first_name":"Anna V","id":"406F989C-F248-11E8-B48F-1D18A9856A87"}],"type":"research_data","license":"https://creativecommons.org/licenses/by-nc/4.0/","file_date_updated":"2023-02-28T06:34:12Z","abstract":[{"text":"See Readme File for further information.","lang":"eng"}],"citation":{"chicago":"Cremer, Sylvia. “Source Data for Metzler et Al, 2023: Trade-Offs between Immunity and Competitive Ability in Fighting Ant Males .” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/AT:ISTA:12693.","short":"S. Cremer, (2023).","mla":"Cremer, Sylvia. Source Data for Metzler et Al, 2023: Trade-Offs between Immunity and Competitive Ability in Fighting Ant Males . Institute of Science and Technology Austria, 2023, doi:10.15479/AT:ISTA:12693.","ieee":"S. Cremer, “Source data for Metzler et al, 2023: Trade-offs between immunity and competitive ability in fighting ant males .” Institute of Science and Technology Austria, 2023.","apa":"Cremer, S. (2023). Source data for Metzler et al, 2023: Trade-offs between immunity and competitive ability in fighting ant males . Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:12693","ista":"Cremer S. 2023. Source data for Metzler et al, 2023: Trade-offs between immunity and competitive ability in fighting ant males , Institute of Science and Technology Austria, 10.15479/AT:ISTA:12693.","ama":"Cremer S. Source data for Metzler et al, 2023: Trade-offs between immunity and competitive ability in fighting ant males . 2023. doi:10.15479/AT:ISTA:12693"},"tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png","short":"CC BY-NC (4.0)"},"oa":1,"doi":"10.15479/AT:ISTA:12693","date_published":"2023-02-28T00:00:00Z","month":"02","day":"28","article_processing_charge":"No","has_accepted_license":"1"},{"article_type":"original","page":"1456-1467","publication":"Nature Medicine","citation":{"ama":"Xu J, Liu N, Polemiti E, et al. Effects of urban living environments on mental health in adults. Nature Medicine. 2023;29:1456-1467. doi:10.1038/s41591-023-02365-w","ista":"Xu J, Liu N, Polemiti E, Garcia-Mondragon L, Tang J, Liu X, Lett T, Yu L, Nöthen MM, Feng J, Yu C, Marquand A, Schumann G, Walter H, Heinz A, Ralser M, Twardziok S, Vaidya N, Serin E, Jentsch M, Hitchen E, Eils R, Taron UH, Schütz T, Schepanski K, Banks J, Banaschewski T, Jansone K, Christmann N, Meyer-Lindenberg A, Tost H, Holz N, Schwarz E, Stringaris A, Neidhart M, Nees F, Siehl S, A. Andreassen O, T. Westlye L, Van Der Meer D, Fernandez S, Kjelkenes R, Ask H, Rapp M, Tschorn M, Böttger SJ, Novarino G, Marr L, Slater M, Viapiana GF, Orosa FE, Gallego J, Pastor A, Forstner A, Hoffmann P, M. Nöthen M, J. Forstner A, Claus I, Miller A, Heilmann-Heimbach S, Sommer P, Boye M, Wilbertz J, Schmitt K, Jirsa V, Petkoski S, Pitel S, Otten L, Athanasiadis AP, Pearmund C, Spanlang B, Alvarez E, Sanchez M, Giner A, Hese S, Renner P, Jia T, Gong Y, Xia Y, Chang X, Calhoun V, Liu J, Thompson P, Clinton N, Desrivieres S, H. Young A, Stahl B, Ogoh G. 2023. Effects of urban living environments on mental health in adults. Nature Medicine. 29, 1456–1467.","ieee":"J. Xu et al., “Effects of urban living environments on mental health in adults,” Nature Medicine, vol. 29. Springer Nature, pp. 1456–1467, 2023.","apa":"Xu, J., Liu, N., Polemiti, E., Garcia-Mondragon, L., Tang, J., Liu, X., … Ogoh, G. (2023). Effects of urban living environments on mental health in adults. Nature Medicine. Springer Nature. https://doi.org/10.1038/s41591-023-02365-w","mla":"Xu, Jiayuan, et al. “Effects of Urban Living Environments on Mental Health in Adults.” Nature Medicine, vol. 29, Springer Nature, 2023, pp. 1456–67, doi:10.1038/s41591-023-02365-w.","short":"J. Xu, N. Liu, E. Polemiti, L. Garcia-Mondragon, J. Tang, X. Liu, T. Lett, L. Yu, M.M. Nöthen, J. Feng, C. Yu, A. Marquand, G. Schumann, H. Walter, A. Heinz, M. Ralser, S. Twardziok, N. Vaidya, E. Serin, M. Jentsch, E. Hitchen, R. Eils, U.H. Taron, T. Schütz, K. Schepanski, J. Banks, T. Banaschewski, K. Jansone, N. Christmann, A. Meyer-Lindenberg, H. Tost, N. Holz, E. Schwarz, A. Stringaris, M. Neidhart, F. Nees, S. Siehl, O. A. Andreassen, L. T. Westlye, D. Van Der Meer, S. Fernandez, R. Kjelkenes, H. Ask, M. Rapp, M. Tschorn, S.J. Böttger, G. Novarino, L. Marr, M. Slater, G.F. Viapiana, F.E. Orosa, J. Gallego, A. Pastor, A. Forstner, P. Hoffmann, M. M. Nöthen, A. J. Forstner, I. Claus, A. Miller, S. Heilmann-Heimbach, P. Sommer, M. Boye, J. Wilbertz, K. Schmitt, V. Jirsa, S. Petkoski, S. Pitel, L. Otten, A.P. Athanasiadis, C. Pearmund, B. Spanlang, E. Alvarez, M. Sanchez, A. Giner, S. Hese, P. Renner, T. Jia, Y. Gong, Y. Xia, X. Chang, V. Calhoun, J. Liu, P. Thompson, N. Clinton, S. Desrivieres, A. H. Young, B. Stahl, G. Ogoh, Nature Medicine 29 (2023) 1456–1467.","chicago":"Xu, Jiayuan, Nana Liu, Elli Polemiti, Liliana Garcia-Mondragon, Jie Tang, Xiaoxuan Liu, Tristram Lett, et al. “Effects of Urban Living Environments on Mental Health in Adults.” Nature Medicine. Springer Nature, 2023. https://doi.org/10.1038/s41591-023-02365-w."},"date_published":"2023-06-15T00:00:00Z","scopus_import":"1","day":"15","article_processing_charge":"No","has_accepted_license":"1","status":"public","title":"Effects of urban living environments on mental health in adults","ddc":["570"],"intvolume":" 29","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13168","oa_version":"Published Version","file":[{"file_id":"13171","relation":"main_file","success":1,"checksum":"bcd3225b2731c3442fa98987fd3bd46d","date_created":"2023-06-26T10:15:44Z","date_updated":"2023-06-26T10:15:44Z","access_level":"open_access","file_name":"2023_NatureMedicine_Xu.pdf","creator":"dernst","content_type":"application/pdf","file_size":7365360}],"type":"journal_article","abstract":[{"lang":"eng","text":"Urban-living individuals are exposed to many environmental factors that may combine and interact to influence mental health. While individual factors of an urban environment have been investigated in isolation, no attempt has been made to model how complex, real-life exposure to living in the city relates to brain and mental health, and how this is moderated by genetic factors. Using the data of 156,075 participants from the UK Biobank, we carried out sparse canonical correlation analyses to investigate the relationships between urban environments and psychiatric symptoms. We found an environmental profile of social deprivation, air pollution, street network and urban land-use density that was positively correlated with an affective symptom group (r = 0.22, Pperm < 0.001), mediated by brain volume differences consistent with reward processing, and moderated by genes enriched for stress response, including CRHR1, explaining 2.01% of the variance in brain volume differences. Protective factors such as greenness and generous destination accessibility were negatively correlated with an anxiety symptom group (r = 0.10, Pperm < 0.001), mediated by brain regions necessary for emotion regulation and moderated by EXD3, explaining 1.65% of the variance. The third urban environmental profile was correlated with an emotional instability symptom group (r = 0.03, Pperm < 0.001). Our findings suggest that different environmental profiles of urban living may influence specific psychiatric symptom groups through distinct neurobiological pathways."}],"isi":1,"quality_controlled":"1","oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["001013172700001"]},"language":[{"iso":"eng"}],"doi":"10.1038/s41591-023-02365-w","month":"06","publication_identifier":{"issn":["1078-8956"],"eissn":["1546-170X"]},"publication_status":"published","publisher":"Springer Nature","department":[{"_id":"GaNo"}],"acknowledgement":"This work received support from the European Union-funded Horizon Europe project ‘environMENTAL’ (no. 101057429 to G.S., A.M. and M.M.N.) and cofunding by UK Research and Innovation under the UK Government’s Horizon Europe funding guarantee (nos. 10041392 and 10038599) for study design and data analysis; the Horizon 2020-funded European Research Council Advanced Grant ‘STRATIFY’ (no. 695313 to G.S. for study design and data analysis); the Human Brain Project (HBP SGA3, no. 945539 to G.S. for study design and data analysis); the National Institutes of Health (grant no. R01DA049238 to G.S. for study design and data analysis); the German Research Foundation (COPE; grant no. 675346 to G.S. for study design and data analysis); the National Natural Science Foundation of China (grant no. 82001797 to J.X., grant no. 82030053 to C.Y., grant no. 82202093 to J.T. and grant no. 82150710554 to G.S. for study design, data analysis and preparation of the manuscript); National Key Research and Development Program of China (grant no. 2018YFC1314301 to C.Y. for study design and data analysis); Tianjin Applied Basic Research Diversified Investment Foundation (grant no. 21JCYBJC01360 to J.X. for study design and data analysis); Tianjin Health Technology Project (grant no. TJWJ2021QN002 to J.X. for preparation of the manuscript); Science & Technology Development Fund of the Tianjin Education Commission for Higher Education (grant no. 2019KJ195 to J.X. for preparation of the manuscript); the Tianjin Medical University ‘Clinical Talent Training 123 Climbing Plan’ to J.X. for the preparation of the manuscript; Tianjin Key Medical Discipline (Specialty) Construction Project (grant no. TJYXZDXK-001A to C.Y. for preparation of the manuscript); the National Key R&D Program of China (grant no. 2022YFE0209400 to L.Y. for study design and data analysis); the Tsinghua University Initiative Scientific Research Program (grant no. 2021Z11GHX002 to L.Y. for study design and data analysis); the National Key Scientific and Technological Infrastructure Project ‘Earth System Science Numerical Simulator Facility’ (EarthLab to L.Y. for study design and data analysis); the Chinese National High-end Foreign Expert Recruitment Plan to G.S.; and the Alexander von Humboldt Foundation to G.S. for study design and data analysis.","year":"2023","date_created":"2023-06-25T22:00:46Z","date_updated":"2023-12-13T11:25:55Z","volume":29,"author":[{"last_name":"Xu","first_name":"Jiayuan","full_name":"Xu, Jiayuan"},{"full_name":"Liu, Nana","last_name":"Liu","first_name":"Nana"},{"last_name":"Polemiti","first_name":"Elli","full_name":"Polemiti, Elli"},{"full_name":"Garcia-Mondragon, Liliana","last_name":"Garcia-Mondragon","first_name":"Liliana"},{"last_name":"Tang","first_name":"Jie","full_name":"Tang, Jie"},{"full_name":"Liu, Xiaoxuan","first_name":"Xiaoxuan","last_name":"Liu"},{"first_name":"Tristram","last_name":"Lett","full_name":"Lett, Tristram"},{"full_name":"Yu, Le","first_name":"Le","last_name":"Yu"},{"last_name":"Nöthen","first_name":"Markus M.","full_name":"Nöthen, Markus M."},{"full_name":"Feng, Jianfeng","first_name":"Jianfeng","last_name":"Feng"},{"last_name":"Yu","first_name":"Chunshui","full_name":"Yu, Chunshui"},{"full_name":"Marquand, Andre","last_name":"Marquand","first_name":"Andre"},{"full_name":"Schumann, Gunter","last_name":"Schumann","first_name":"Gunter"},{"full_name":"Walter, Henrik","first_name":"Henrik","last_name":"Walter"},{"last_name":"Heinz","first_name":"Andreas","full_name":"Heinz, Andreas"},{"last_name":"Ralser","first_name":"Markus","full_name":"Ralser, Markus"},{"first_name":"Sven","last_name":"Twardziok","full_name":"Twardziok, Sven"},{"first_name":"Nilakshi","last_name":"Vaidya","full_name":"Vaidya, Nilakshi"},{"last_name":"Serin","first_name":"Emin","full_name":"Serin, Emin"},{"last_name":"Jentsch","first_name":"Marcel","full_name":"Jentsch, Marcel"},{"full_name":"Hitchen, Esther","last_name":"Hitchen","first_name":"Esther"},{"full_name":"Eils, Roland","first_name":"Roland","last_name":"Eils"},{"full_name":"Taron, Ulrike Helene","last_name":"Taron","first_name":"Ulrike Helene"},{"full_name":"Schütz, Tatjana","last_name":"Schütz","first_name":"Tatjana"},{"first_name":"Kerstin","last_name":"Schepanski","full_name":"Schepanski, Kerstin"},{"full_name":"Banks, Jamie","last_name":"Banks","first_name":"Jamie"},{"full_name":"Banaschewski, Tobias","first_name":"Tobias","last_name":"Banaschewski"},{"full_name":"Jansone, Karina","last_name":"Jansone","first_name":"Karina"},{"last_name":"Christmann","first_name":"Nina","full_name":"Christmann, Nina"},{"first_name":"Andreas","last_name":"Meyer-Lindenberg","full_name":"Meyer-Lindenberg, Andreas"},{"full_name":"Tost, Heike","first_name":"Heike","last_name":"Tost"},{"full_name":"Holz, Nathalie","last_name":"Holz","first_name":"Nathalie"},{"full_name":"Schwarz, Emanuel","first_name":"Emanuel","last_name":"Schwarz"},{"last_name":"Stringaris","first_name":"Argyris","full_name":"Stringaris, Argyris"},{"full_name":"Neidhart, Maja","first_name":"Maja","last_name":"Neidhart"},{"first_name":"Frauke","last_name":"Nees","full_name":"Nees, Frauke"},{"full_name":"Siehl, Sebastian","last_name":"Siehl","first_name":"Sebastian"},{"last_name":"A. Andreassen","first_name":"Ole","full_name":"A. Andreassen, Ole"},{"full_name":"T. Westlye, Lars","last_name":"T. Westlye","first_name":"Lars"},{"full_name":"Van Der Meer, Dennis","last_name":"Van Der Meer","first_name":"Dennis"},{"first_name":"Sara","last_name":"Fernandez","full_name":"Fernandez, Sara"},{"first_name":"Rikka","last_name":"Kjelkenes","full_name":"Kjelkenes, Rikka"},{"full_name":"Ask, Helga","first_name":"Helga","last_name":"Ask"},{"full_name":"Rapp, Michael","first_name":"Michael","last_name":"Rapp"},{"full_name":"Tschorn, Mira","last_name":"Tschorn","first_name":"Mira"},{"last_name":"Böttger","first_name":"Sarah Jane","full_name":"Böttger, Sarah Jane"},{"id":"3E57A680-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-7673-7178","first_name":"Gaia","last_name":"Novarino","full_name":"Novarino, Gaia"},{"first_name":"Lena","last_name":"Marr","id":"4406F586-F248-11E8-B48F-1D18A9856A87","full_name":"Marr, Lena"},{"full_name":"Slater, Mel","first_name":"Mel","last_name":"Slater"},{"full_name":"Viapiana, Guillem Feixas","last_name":"Viapiana","first_name":"Guillem Feixas"},{"first_name":"Francisco Eiroa","last_name":"Orosa","full_name":"Orosa, Francisco Eiroa"},{"first_name":"Jaime","last_name":"Gallego","full_name":"Gallego, Jaime"},{"first_name":"Alvaro","last_name":"Pastor","full_name":"Pastor, Alvaro"},{"full_name":"Forstner, Andreas","last_name":"Forstner","first_name":"Andreas"},{"last_name":"Hoffmann","first_name":"Per","full_name":"Hoffmann, Per"},{"full_name":"M. Nöthen, Markus","first_name":"Markus","last_name":"M. Nöthen"},{"full_name":"J. Forstner, Andreas","last_name":"J. Forstner","first_name":"Andreas"},{"first_name":"Isabelle","last_name":"Claus","full_name":"Claus, Isabelle"},{"full_name":"Miller, Abbi","first_name":"Abbi","last_name":"Miller"},{"last_name":"Heilmann-Heimbach","first_name":"Stefanie","full_name":"Heilmann-Heimbach, Stefanie"},{"last_name":"Sommer","first_name":"Peter","full_name":"Sommer, Peter"},{"first_name":"Mona","last_name":"Boye","full_name":"Boye, Mona"},{"first_name":"Johannes","last_name":"Wilbertz","full_name":"Wilbertz, Johannes"},{"last_name":"Schmitt","first_name":"Karen","full_name":"Schmitt, Karen"},{"last_name":"Jirsa","first_name":"Viktor","full_name":"Jirsa, Viktor"},{"last_name":"Petkoski","first_name":"Spase","full_name":"Petkoski, Spase"},{"first_name":"Séverine","last_name":"Pitel","full_name":"Pitel, Séverine"},{"first_name":"Lisa","last_name":"Otten","full_name":"Otten, Lisa"},{"last_name":"Athanasiadis","first_name":"Anastasios Polykarpos","full_name":"Athanasiadis, Anastasios Polykarpos"},{"last_name":"Pearmund","first_name":"Charlie","full_name":"Pearmund, Charlie"},{"full_name":"Spanlang, Bernhard","first_name":"Bernhard","last_name":"Spanlang"},{"full_name":"Alvarez, Elena","first_name":"Elena","last_name":"Alvarez"},{"first_name":"Mavi","last_name":"Sanchez","full_name":"Sanchez, Mavi"},{"full_name":"Giner, Arantxa","first_name":"Arantxa","last_name":"Giner"},{"full_name":"Hese, Sören","last_name":"Hese","first_name":"Sören"},{"full_name":"Renner, Paul","first_name":"Paul","last_name":"Renner"},{"first_name":"Tianye","last_name":"Jia","full_name":"Jia, Tianye"},{"last_name":"Gong","first_name":"Yanting","full_name":"Gong, Yanting"},{"full_name":"Xia, Yunman","last_name":"Xia","first_name":"Yunman"},{"last_name":"Chang","first_name":"Xiao","full_name":"Chang, Xiao"},{"full_name":"Calhoun, Vince","last_name":"Calhoun","first_name":"Vince"},{"full_name":"Liu, Jingyu","first_name":"Jingyu","last_name":"Liu"},{"last_name":"Thompson","first_name":"Paul","full_name":"Thompson, Paul"},{"first_name":"Nicholas","last_name":"Clinton","full_name":"Clinton, Nicholas"},{"full_name":"Desrivieres, Sylvane","last_name":"Desrivieres","first_name":"Sylvane"},{"full_name":"H. Young, Allan","first_name":"Allan","last_name":"H. Young"},{"full_name":"Stahl, Bernd","first_name":"Bernd","last_name":"Stahl"},{"full_name":"Ogoh, George","last_name":"Ogoh","first_name":"George"}],"file_date_updated":"2023-06-26T10:15:44Z"},{"publication_identifier":{"eisbn":["9798350323658"],"issn":["1050-4729"]},"month":"07","external_id":{"isi":["001048371104068"]},"oa":1,"project":[{"grant_number":"M03319","_id":"eb901961-77a9-11ec-83b8-f5c883a62027","name":"Perception-Aware Appearance Fabrication"}],"isi":1,"quality_controlled":"1","doi":"10.1109/ICRA48891.2023.10160465","conference":{"start_date":"2023-05-29","location":"London, United Kingdom","end_date":"2023-06-02","name":"ICRA: International Conference on Robotics and Automation"},"language":[{"iso":"eng"}],"file_date_updated":"2023-05-16T09:12:05Z","acknowledgement":"This work is graciously supported by FWF Lise Meitner (Grant M 3319). Kang Liao sincerely thank Emiliano Luci, Chunyu Lin, and Yao Zhao for their huge support.","year":"2023","department":[{"_id":"BeBi"}],"publisher":"IEEE","publication_status":"published","author":[{"first_name":"Kang","last_name":"Liao","full_name":"Liao, Kang"},{"last_name":"Tricard","first_name":"Thibault","full_name":"Tricard, Thibault"},{"last_name":"Piovarci","first_name":"Michael","orcid":"0000-0002-5062-4474","id":"62E473F4-5C99-11EA-A40E-AF823DDC885E","full_name":"Piovarci, Michael"},{"full_name":"Seidel, Hans-Peter","last_name":"Seidel","first_name":"Hans-Peter"},{"last_name":"Babaei","first_name":"Vahid","full_name":"Babaei, Vahid"}],"volume":2023,"date_created":"2023-05-16T09:14:09Z","date_updated":"2023-12-13T11:20:00Z","scopus_import":"1","keyword":["reinforcement learning","deposition","control","color","multi-filament"],"article_processing_charge":"No","has_accepted_license":"1","day":"04","citation":{"chicago":"Liao, Kang, Thibault Tricard, Michael Piovarci, Hans-Peter Seidel, and Vahid Babaei. “Learning Deposition Policies for Fused Multi-Material 3D Printing.” In 2023 IEEE International Conference on Robotics and Automation, 2023:12345–52. IEEE, 2023. https://doi.org/10.1109/ICRA48891.2023.10160465.","mla":"Liao, Kang, et al. “Learning Deposition Policies for Fused Multi-Material 3D Printing.” 2023 IEEE International Conference on Robotics and Automation, vol. 2023, IEEE, 2023, pp. 12345–52, doi:10.1109/ICRA48891.2023.10160465.","short":"K. Liao, T. Tricard, M. Piovarci, H.-P. Seidel, V. Babaei, in:, 2023 IEEE International Conference on Robotics and Automation, IEEE, 2023, pp. 12345–12352.","ista":"Liao K, Tricard T, Piovarci M, Seidel H-P, Babaei V. 2023. Learning deposition policies for fused multi-material 3D printing. 2023 IEEE International Conference on Robotics and Automation. ICRA: International Conference on Robotics and Automation vol. 2023, 12345–12352.","apa":"Liao, K., Tricard, T., Piovarci, M., Seidel, H.-P., & Babaei, V. (2023). Learning deposition policies for fused multi-material 3D printing. In 2023 IEEE International Conference on Robotics and Automation (Vol. 2023, pp. 12345–12352). London, United Kingdom: IEEE. https://doi.org/10.1109/ICRA48891.2023.10160465","ieee":"K. Liao, T. Tricard, M. Piovarci, H.-P. Seidel, and V. Babaei, “Learning deposition policies for fused multi-material 3D printing,” in 2023 IEEE International Conference on Robotics and Automation, London, United Kingdom, 2023, vol. 2023, pp. 12345–12352.","ama":"Liao K, Tricard T, Piovarci M, Seidel H-P, Babaei V. Learning deposition policies for fused multi-material 3D printing. In: 2023 IEEE International Conference on Robotics and Automation. Vol 2023. IEEE; 2023:12345-12352. doi:10.1109/ICRA48891.2023.10160465"},"publication":"2023 IEEE International Conference on Robotics and Automation","page":"12345-12352","date_published":"2023-07-04T00:00:00Z","type":"conference","abstract":[{"lang":"eng","text":"3D printing based on continuous deposition of materials, such as filament-based 3D printing, has seen widespread adoption thanks to its versatility in working with a wide range of materials. An important shortcoming of this type of technology is its limited multi-material capabilities. While there are simple hardware designs that enable multi-material printing in principle, the required software is heavily underdeveloped. A typical hardware design fuses together individual materials fed into a single chamber from multiple inlets before they are deposited. This design, however, introduces a time delay between the intended material mixture and its actual deposition. In this work, inspired by diverse path planning research in robotics, we show that this mechanical challenge can be addressed via improved printer control. We propose to formulate the search for optimal multi-material printing policies in a reinforcement\r\nlearning setup. We put forward a simple numerical deposition model that takes into account the non-linear material mixing and delayed material deposition. To validate our system we focus on color fabrication, a problem known for its strict requirements for varying material mixtures at a high spatial frequency. We demonstrate that our learned control policy outperforms state-of-the-art hand-crafted algorithms."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12976","intvolume":" 2023","title":"Learning deposition policies for fused multi-material 3D printing","status":"public","ddc":["004"],"file":[{"access_level":"open_access","file_name":"Liao2023.pdf","file_size":5367986,"content_type":"application/pdf","creator":"mpiovarc","relation":"main_file","file_id":"12977","checksum":"daeaa67124777d88487f933ea3f77164","success":1,"date_updated":"2023-05-16T09:12:05Z","date_created":"2023-05-16T09:12:05Z"}],"oa_version":"Submitted Version"},{"article_number":"3506","file_date_updated":"2023-06-26T10:26:04Z","acknowledgement":"We thank Manfred Schartl for sharing RNA-seq data from medaka ovaries and testes prior to publication; Maria Novatchkova for help with RNA-seq analysis; Katharina Lust for advice on medaka techniques; Milan Malinsky for input on Lake Malawi cichlid Bouncer sequences; Felicia Spitzer, Mirjam Binner, and Anna Bandura for help with genotyping; Friedrich Puhl, Kerstin Rattner, Julia Koenig, and Dijana Sunjic for taking care of zebrafish and medaka; and the Pauli lab for helpful discussions about the project and feedback on the manuscript. K.R.B.G. was supported by a DOC Fellowship from the Austrian Academy of Sciences. Work in the Pauli lab was supported by the FWF START program (Y 1031-B28 to A.P.), the ERC CoG 101044495/GaMe, the HFSP Career Development Award (CDA00066/2015 to A.P.), a HFSP Young Investigator Award (RGY0079/2020 to A.P.) and the FWF SFB RNA-Deco (project number F80). The IMP receives institutional funding from Boehringer Ingelheim and the Austrian Research Promotion Agency (Headquarter grant FFG-852936). Work by J.S. and Y.M. in this project was supported by the Israel Science Foundation grant 636/21 to Y.M. Work by L.J. was supported by the Swedish Research Council grant 2020-04936 and the Knut and Alice Wallenberg Foundation grant 2018.0042. For the purpose of Open Access, the author has applied a CC BY public copyright license to any Author Accepted Manuscript (AAM) version arising from this submission.","year":"2023","publication_status":"published","department":[{"_id":"FyKo"}],"publisher":"Springer Nature","author":[{"first_name":"Krista R.B.","last_name":"Gert","full_name":"Gert, Krista R.B."},{"full_name":"Panser, Karin","first_name":"Karin","last_name":"Panser"},{"last_name":"Surm","first_name":"Joachim","full_name":"Surm, Joachim"},{"last_name":"Steinmetz","first_name":"Benjamin S.","full_name":"Steinmetz, Benjamin S."},{"full_name":"Schleiffer, Alexander","last_name":"Schleiffer","first_name":"Alexander"},{"first_name":"Luca","last_name":"Jovine","full_name":"Jovine, Luca"},{"full_name":"Moran, Yehu","last_name":"Moran","first_name":"Yehu"},{"full_name":"Kondrashov, Fyodor","orcid":"0000-0001-8243-4694","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","last_name":"Kondrashov","first_name":"Fyodor"},{"full_name":"Pauli, Andrea","first_name":"Andrea","last_name":"Pauli"}],"date_updated":"2023-12-13T11:26:34Z","date_created":"2023-06-25T22:00:45Z","volume":14,"month":"06","publication_identifier":{"eissn":["2041-1723"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"isi":["001048208600023"]},"quality_controlled":"1","isi":1,"doi":"10.1038/s41467-023-39317-4","language":[{"iso":"eng"}],"type":"journal_article","abstract":[{"lang":"eng","text":"Molecular compatibility between gametes is a prerequisite for successful fertilization. As long as a sperm and egg can recognize and bind each other via their surface proteins, gamete fusion may occur even between members of separate species, resulting in hybrids that can impact speciation. The egg membrane protein Bouncer confers species specificity to gamete interactions between medaka and zebrafish, preventing their cross-fertilization. Here, we leverage this specificity to uncover distinct amino acid residues and N-glycosylation patterns that differentially influence the function of medaka and zebrafish Bouncer and contribute to cross-species incompatibility. Curiously, in contrast to the specificity observed for medaka and zebrafish Bouncer, seahorse and fugu Bouncer are compatible with both zebrafish and medaka sperm, in line with the pervasive purifying selection that dominates Bouncer’s evolution. The Bouncer-sperm interaction is therefore the product of seemingly opposing evolutionary forces that, for some species, restrict fertilization to closely related fish, and for others, allow broad gamete compatibility that enables hybridization."}],"_id":"13164","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","ddc":["570"],"title":"Divergent molecular signatures in fish Bouncer proteins define cross-fertilization boundaries","intvolume":" 14","oa_version":"Published Version","file":[{"access_level":"open_access","file_name":"2023_NatureComm_Gert.pdf","content_type":"application/pdf","file_size":1555006,"creator":"dernst","relation":"main_file","file_id":"13172","checksum":"d6165f41c7f1c2c04b04256ec9f003fb","success":1,"date_updated":"2023-06-26T10:26:04Z","date_created":"2023-06-26T10:26:04Z"}],"scopus_import":"1","day":"14","has_accepted_license":"1","article_processing_charge":"No","publication":"Nature Communications","citation":{"mla":"Gert, Krista R. B., et al. “Divergent Molecular Signatures in Fish Bouncer Proteins Define Cross-Fertilization Boundaries.” Nature Communications, vol. 14, 3506, Springer Nature, 2023, doi:10.1038/s41467-023-39317-4.","short":"K.R.B. Gert, K. Panser, J. Surm, B.S. Steinmetz, A. Schleiffer, L. Jovine, Y. Moran, F. Kondrashov, A. Pauli, Nature Communications 14 (2023).","chicago":"Gert, Krista R.B., Karin Panser, Joachim Surm, Benjamin S. Steinmetz, Alexander Schleiffer, Luca Jovine, Yehu Moran, Fyodor Kondrashov, and Andrea Pauli. “Divergent Molecular Signatures in Fish Bouncer Proteins Define Cross-Fertilization Boundaries.” Nature Communications. Springer Nature, 2023. https://doi.org/10.1038/s41467-023-39317-4.","ama":"Gert KRB, Panser K, Surm J, et al. Divergent molecular signatures in fish Bouncer proteins define cross-fertilization boundaries. Nature Communications. 2023;14. doi:10.1038/s41467-023-39317-4","ista":"Gert KRB, Panser K, Surm J, Steinmetz BS, Schleiffer A, Jovine L, Moran Y, Kondrashov F, Pauli A. 2023. Divergent molecular signatures in fish Bouncer proteins define cross-fertilization boundaries. Nature Communications. 14, 3506.","ieee":"K. R. B. Gert et al., “Divergent molecular signatures in fish Bouncer proteins define cross-fertilization boundaries,” Nature Communications, vol. 14. Springer Nature, 2023.","apa":"Gert, K. R. B., Panser, K., Surm, J., Steinmetz, B. S., Schleiffer, A., Jovine, L., … Pauli, A. (2023). Divergent molecular signatures in fish Bouncer proteins define cross-fertilization boundaries. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-023-39317-4"},"article_type":"original","date_published":"2023-06-14T00:00:00Z"},{"language":[{"iso":"eng"}],"doi":"10.2140/pjm.2023.325.331","quality_controlled":"1","isi":1,"project":[{"_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","grant_number":"101034413","name":"IST-BRIDGE: International postdoctoral program","call_identifier":"H2020"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"isi":["001104766900001"],"arxiv":["2001.02987"]},"month":"11","publication_identifier":{"eissn":["0030-8730"]},"date_created":"2023-01-16T11:46:19Z","date_updated":"2023-12-13T11:18:14Z","volume":325,"author":[{"last_name":"Verzobio","first_name":"Matteo","orcid":"0000-0002-0854-0306","id":"7aa8f170-131e-11ed-88e1-a9efd01027cb","full_name":"Verzobio, Matteo"}],"publication_status":"published","publisher":"Mathematical Sciences Publishers","department":[{"_id":"TiBr"}],"acknowledgement":"This paper is part of the author’s PhD thesis at Università of Pisa. Moreover, this\r\nproject has received funding from the European Union’s Horizon 2020 research\r\nand innovation programme under the Marie Skłodowska-Curie Grant Agreement\r\nNo. 101034413. I thank the referee for many helpful comments.","year":"2023","file_date_updated":"2023-11-13T09:50:41Z","ec_funded":1,"date_published":"2023-11-03T00:00:00Z","article_type":"original","page":"331-351","publication":"Pacific Journal of Mathematics","citation":{"apa":"Verzobio, M. (2023). Some effectivity results for primitive divisors of elliptic divisibility sequences. Pacific Journal of Mathematics. Mathematical Sciences Publishers. https://doi.org/10.2140/pjm.2023.325.331","ieee":"M. Verzobio, “Some effectivity results for primitive divisors of elliptic divisibility sequences,” Pacific Journal of Mathematics, vol. 325, no. 2. Mathematical Sciences Publishers, pp. 331–351, 2023.","ista":"Verzobio M. 2023. Some effectivity results for primitive divisors of elliptic divisibility sequences. Pacific Journal of Mathematics. 325(2), 331–351.","ama":"Verzobio M. Some effectivity results for primitive divisors of elliptic divisibility sequences. Pacific Journal of Mathematics. 2023;325(2):331-351. doi:10.2140/pjm.2023.325.331","chicago":"Verzobio, Matteo. “Some Effectivity Results for Primitive Divisors of Elliptic Divisibility Sequences.” Pacific Journal of Mathematics. Mathematical Sciences Publishers, 2023. https://doi.org/10.2140/pjm.2023.325.331.","short":"M. Verzobio, Pacific Journal of Mathematics 325 (2023) 331–351.","mla":"Verzobio, Matteo. “Some Effectivity Results for Primitive Divisors of Elliptic Divisibility Sequences.” Pacific Journal of Mathematics, vol. 325, no. 2, Mathematical Sciences Publishers, 2023, pp. 331–51, doi:10.2140/pjm.2023.325.331."},"day":"03","has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","scopus_import":"1","oa_version":"Published Version","file":[{"checksum":"b6218d16a72742d8bb38d6fc3c9bb8c6","success":1,"date_created":"2023-11-13T09:50:41Z","date_updated":"2023-11-13T09:50:41Z","relation":"main_file","file_id":"14525","content_type":"application/pdf","file_size":389897,"creator":"dernst","access_level":"open_access","file_name":"2023_PacificJourMaths_Verzobio.pdf"}],"status":"public","ddc":["510"],"title":"Some effectivity results for primitive divisors of elliptic divisibility sequences","intvolume":" 325","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12313","abstract":[{"lang":"eng","text":"Let P be a nontorsion point on an elliptic curve defined over a number field K and consider the sequence {Bn}n∈N of the denominators of x(nP). We prove that every term of the sequence of the Bn has a primitive divisor for n greater than an effectively computable constant that we will explicitly compute. This constant will depend only on the model defining the curve."}],"issue":"2","type":"journal_article"},{"article_type":"original","page":"1-12","publication":"Electronic Communications in Probability","citation":{"ama":"Dello Schiavo L, Lytvynov E. A Mecke-type characterization of the Dirichlet–Ferguson measure. Electronic Communications in Probability. 2023;28:1-12. doi:10.1214/23-ECP528","ieee":"L. Dello Schiavo and E. Lytvynov, “A Mecke-type characterization of the Dirichlet–Ferguson measure,” Electronic Communications in Probability, vol. 28. Institute of Mathematical Statistics, pp. 1–12, 2023.","apa":"Dello Schiavo, L., & Lytvynov, E. (2023). A Mecke-type characterization of the Dirichlet–Ferguson measure. Electronic Communications in Probability. Institute of Mathematical Statistics. https://doi.org/10.1214/23-ECP528","ista":"Dello Schiavo L, Lytvynov E. 2023. A Mecke-type characterization of the Dirichlet–Ferguson measure. Electronic Communications in Probability. 28, 1–12.","short":"L. Dello Schiavo, E. Lytvynov, Electronic Communications in Probability 28 (2023) 1–12.","mla":"Dello Schiavo, Lorenzo, and Eugene Lytvynov. “A Mecke-Type Characterization of the Dirichlet–Ferguson Measure.” Electronic Communications in Probability, vol. 28, Institute of Mathematical Statistics, 2023, pp. 1–12, doi:10.1214/23-ECP528.","chicago":"Dello Schiavo, Lorenzo, and Eugene Lytvynov. “A Mecke-Type Characterization of the Dirichlet–Ferguson Measure.” Electronic Communications in Probability. Institute of Mathematical Statistics, 2023. https://doi.org/10.1214/23-ECP528."},"date_published":"2023-05-05T00:00:00Z","scopus_import":"1","day":"05","has_accepted_license":"1","article_processing_charge":"No","status":"public","title":"A Mecke-type characterization of the Dirichlet–Ferguson measure","ddc":["510"],"intvolume":" 28","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13145","oa_version":"Published Version","file":[{"checksum":"4a543fe4b3f9e747cc52167c17bfb524","success":1,"date_updated":"2023-06-19T09:37:40Z","date_created":"2023-06-19T09:37:40Z","relation":"main_file","file_id":"13152","content_type":"application/pdf","file_size":271434,"creator":"dernst","access_level":"open_access","file_name":"2023_ElectronCommProbability_Schiavo.pdf"}],"type":"journal_article","abstract":[{"text":"We prove a characterization of the Dirichlet–Ferguson measure over an arbitrary finite diffuse measure space. We provide an interpretation of this characterization in analogy with the Mecke identity for Poisson point processes.","lang":"eng"}],"quality_controlled":"1","isi":1,"project":[{"name":"Configuration Spaces over Non-Smooth Spaces","_id":"34dbf174-11ca-11ed-8bc3-afe9d43d4b9c","grant_number":"E208"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["001042025400001"]},"oa":1,"language":[{"iso":"eng"}],"doi":"10.1214/23-ECP528","month":"05","publication_identifier":{"eissn":["1083-589X"]},"publication_status":"published","department":[{"_id":"JaMa"}],"publisher":"Institute of Mathematical Statistics","acknowledgement":"Research supported by the Sfb 1060 The Mathematics of Emergent Effects (University of Bonn). L.D.S. gratefully acknowledges funding of his current position by the Austrian Science Fund (FWF) through project ESPRIT 208.","year":"2023","date_updated":"2023-12-13T11:24:57Z","date_created":"2023-06-18T22:00:48Z","volume":28,"author":[{"id":"ECEBF480-9E4F-11EA-B557-B0823DDC885E","orcid":"0000-0002-9881-6870","first_name":"Lorenzo","last_name":"Dello Schiavo","full_name":"Dello Schiavo, Lorenzo"},{"first_name":"Eugene","last_name":"Lytvynov","full_name":"Lytvynov, Eugene"}],"file_date_updated":"2023-06-19T09:37:40Z"},{"doi":"10.1109/TIT.2023.3260950","language":[{"iso":"eng"}],"external_id":{"isi":["001017307000023"],"arxiv":["2211.04407"]},"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2211.04407","open_access":"1"}],"oa":1,"quality_controlled":"1","isi":1,"month":"07","publication_identifier":{"eissn":["1557-9654"],"issn":["0018-9448"]},"author":[{"last_name":"Zhang","first_name":"Yihan","orcid":"0000-0002-6465-6258","id":"2ce5da42-b2ea-11eb-bba5-9f264e9d002c","full_name":"Zhang, Yihan"},{"first_name":"Shashank","last_name":"Vatedka","full_name":"Vatedka, Shashank"}],"date_created":"2023-04-16T22:01:09Z","date_updated":"2023-12-13T11:16:46Z","volume":69,"acknowledgement":"YZ thanks Jiajin Li for making the observation given by Equation (23). He also would like to thank Nir Ailon and Ely Porat for several helpful conversations throughout this project, and Alexander Barg for insightful comments on the manuscript.\r\nYZ has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 682203-ERC-[Inf-Speed-Tradeoff]. The work of SV was supported by a seed grant from IIT Hyderabad and the start-up research grant from the Science and Engineering Research Board, India (SRG/2020/000910).","year":"2023","publication_status":"published","department":[{"_id":"MaMo"}],"publisher":"IEEE","date_published":"2023-07-01T00:00:00Z","publication":"IEEE Transactions on Information Theory","citation":{"chicago":"Zhang, Yihan, and Shashank Vatedka. “Multiple Packing: Lower Bounds via Infinite Constellations.” IEEE Transactions on Information Theory. IEEE, 2023. https://doi.org/10.1109/TIT.2023.3260950.","short":"Y. Zhang, S. Vatedka, IEEE Transactions on Information Theory 69 (2023) 4513–4527.","mla":"Zhang, Yihan, and Shashank Vatedka. “Multiple Packing: Lower Bounds via Infinite Constellations.” IEEE Transactions on Information Theory, vol. 69, no. 7, IEEE, 2023, pp. 4513–27, doi:10.1109/TIT.2023.3260950.","apa":"Zhang, Y., & Vatedka, S. (2023). Multiple packing: Lower bounds via infinite constellations. IEEE Transactions on Information Theory. IEEE. https://doi.org/10.1109/TIT.2023.3260950","ieee":"Y. Zhang and S. Vatedka, “Multiple packing: Lower bounds via infinite constellations,” IEEE Transactions on Information Theory, vol. 69, no. 7. IEEE, pp. 4513–4527, 2023.","ista":"Zhang Y, Vatedka S. 2023. Multiple packing: Lower bounds via infinite constellations. IEEE Transactions on Information Theory. 69(7), 4513–4527.","ama":"Zhang Y, Vatedka S. Multiple packing: Lower bounds via infinite constellations. IEEE Transactions on Information Theory. 2023;69(7):4513-4527. doi:10.1109/TIT.2023.3260950"},"article_type":"original","page":"4513-4527","day":"01","article_processing_charge":"No","scopus_import":"1","oa_version":"Preprint","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12838","title":"Multiple packing: Lower bounds via infinite constellations","status":"public","intvolume":" 69","abstract":[{"text":"We study the problem of high-dimensional multiple packing in Euclidean space. Multiple packing is a natural generalization of sphere packing and is defined as follows. Let N > 0 and L ∈ Z ≽2 . A multiple packing is a set C of points in R n such that any point in R n lies in the intersection of at most L – 1 balls of radius √ nN around points in C . Given a well-known connection with coding theory, multiple packings can be viewed as the Euclidean analog of list-decodable codes, which are well-studied for finite fields. In this paper, we derive the best known lower bounds on the optimal density of list-decodable infinite constellations for constant L under a stronger notion called average-radius multiple packing. To this end, we apply tools from high-dimensional geometry and large deviation theory.","lang":"eng"}],"issue":"7","type":"journal_article"},{"publication":"FAccT '23: Proceedings of the 2023 ACM Conference on Fairness, Accountability, and Transparency","citation":{"ieee":"T. A. Henzinger, M. Karimi, K. Kueffner, and K. Mallik, “Runtime monitoring of dynamic fairness properties,” in FAccT ’23: Proceedings of the 2023 ACM Conference on Fairness, Accountability, and Transparency, Chicago, IL, United States, 2023, pp. 604–614.","apa":"Henzinger, T. A., Karimi, M., Kueffner, K., & Mallik, K. (2023). Runtime monitoring of dynamic fairness properties. In FAccT ’23: Proceedings of the 2023 ACM Conference on Fairness, Accountability, and Transparency (pp. 604–614). Chicago, IL, United States: Association for Computing Machinery. https://doi.org/10.1145/3593013.3594028","ista":"Henzinger TA, Karimi M, Kueffner K, Mallik K. 2023. Runtime monitoring of dynamic fairness properties. FAccT ’23: Proceedings of the 2023 ACM Conference on Fairness, Accountability, and Transparency. FAccT: Conference on Fairness, Accountability and Transparency, 604–614.","ama":"Henzinger TA, Karimi M, Kueffner K, Mallik K. Runtime monitoring of dynamic fairness properties. In: FAccT ’23: Proceedings of the 2023 ACM Conference on Fairness, Accountability, and Transparency. Association for Computing Machinery; 2023:604-614. doi:10.1145/3593013.3594028","chicago":"Henzinger, Thomas A, Mahyar Karimi, Konstantin Kueffner, and Kaushik Mallik. “Runtime Monitoring of Dynamic Fairness Properties.” In FAccT ’23: Proceedings of the 2023 ACM Conference on Fairness, Accountability, and Transparency, 604–14. Association for Computing Machinery, 2023. https://doi.org/10.1145/3593013.3594028.","short":"T.A. Henzinger, M. Karimi, K. Kueffner, K. Mallik, in:, FAccT ’23: Proceedings of the 2023 ACM Conference on Fairness, Accountability, and Transparency, Association for Computing Machinery, 2023, pp. 604–614.","mla":"Henzinger, Thomas A., et al. “Runtime Monitoring of Dynamic Fairness Properties.” FAccT ’23: Proceedings of the 2023 ACM Conference on Fairness, Accountability, and Transparency, Association for Computing Machinery, 2023, pp. 604–14, doi:10.1145/3593013.3594028."},"page":"604-614","date_published":"2023-06-12T00:00:00Z","scopus_import":"1","day":"12","article_processing_charge":"No","has_accepted_license":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13228","status":"public","ddc":["000"],"title":"Runtime monitoring of dynamic fairness properties","file":[{"relation":"main_file","file_id":"13245","date_updated":"2023-07-18T07:43:10Z","date_created":"2023-07-18T07:43:10Z","checksum":"96c759db9cdf94b81e37871a66a6ff48","success":1,"file_name":"2023_ACM_HenzingerT.pdf","access_level":"open_access","file_size":4100596,"content_type":"application/pdf","creator":"dernst"}],"oa_version":"Published Version","type":"conference","abstract":[{"text":"A machine-learned system that is fair in static decision-making tasks may have biased societal impacts in the long-run. This may happen when the system interacts with humans and feedback patterns emerge, reinforcing old biases in the system and creating new biases. While existing works try to identify and mitigate long-run biases through smart system design, we introduce techniques for monitoring fairness in real time. Our goal is to build and deploy a monitor that will continuously observe a long sequence of events generated by the system in the wild, and will output, with each event, a verdict on how fair the system is at the current point in time. The advantages of monitoring are two-fold. Firstly, fairness is evaluated at run-time, which is important because unfair behaviors may not be eliminated a priori, at design-time, due to partial knowledge about the system and the environment, as well as uncertainties and dynamic changes in the system and the environment, such as the unpredictability of human behavior. Secondly, monitors are by design oblivious to how the monitored system is constructed, which makes them suitable to be used as trusted third-party fairness watchdogs. They function as computationally lightweight statistical estimators, and their correctness proofs rely on the rigorous analysis of the stochastic process that models the assumptions about the underlying dynamics of the system. We show, both in theory and experiments, how monitors can warn us (1) if a bank’s credit policy over time has created an unfair distribution of credit scores among the population, and (2) if a resource allocator’s allocation policy over time has made unfair allocations. Our experiments demonstrate that the monitors introduce very low overhead. We believe that runtime monitoring is an important and mathematically rigorous new addition to the fairness toolbox.","lang":"eng"}],"external_id":{"isi":["001062819300057"],"arxiv":["2305.04699"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"quality_controlled":"1","isi":1,"project":[{"_id":"62781420-2b32-11ec-9570-8d9b63373d4d","grant_number":"101020093","call_identifier":"H2020","name":"Vigilant Algorithmic Monitoring of Software"}],"conference":{"name":"FAccT: Conference on Fairness, Accountability and Transparency","end_date":"2023-06-15","start_date":"2023-06-12","location":"Chicago, IL, United States"},"doi":"10.1145/3593013.3594028","language":[{"iso":"eng"}],"month":"06","publication_identifier":{"isbn":["9781450372527"]},"year":"2023","acknowledgement":"The authors would like to thank the anonymous reviewers for their valuable comments and helpful suggestions. This work is supported by the European Research Council under Grant No.: ERC-2020-AdG 101020093.","publication_status":"published","department":[{"_id":"ToHe"}],"publisher":"Association for Computing Machinery","author":[{"last_name":"Henzinger","first_name":"Thomas A","orcid":"0000-0002-2985-7724","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","full_name":"Henzinger, Thomas A"},{"last_name":"Karimi","first_name":"Mahyar","full_name":"Karimi, Mahyar"},{"id":"8121a2d0-dc85-11ea-9058-af578f3b4515","orcid":"0000-0001-8974-2542","first_name":"Konstantin","last_name":"Kueffner","full_name":"Kueffner, Konstantin"},{"full_name":"Mallik, Kaushik","id":"0834ff3c-6d72-11ec-94e0-b5b0a4fb8598","orcid":"0000-0001-9864-7475","first_name":"Kaushik","last_name":"Mallik"}],"date_created":"2023-07-16T22:01:09Z","date_updated":"2023-12-13T11:30:31Z","file_date_updated":"2023-07-18T07:43:10Z","ec_funded":1},{"issue":"4","abstract":[{"text":"Recently the leading order of the correlation energy of a Fermi gas in a coupled mean-field and semiclassical scaling regime has been derived, under the assumption of an interaction potential with a small norm and with compact support in Fourier space. We generalize this result to large interaction potentials, requiring only |⋅|V^∈ℓ1(Z3). Our proof is based on approximate, collective bosonization in three dimensions. Significant improvements compared to recent work include stronger bounds on non-bosonizable terms and more efficient control on the bosonization of the kinetic energy.","lang":"eng"}],"type":"journal_article","oa_version":"Published Version","file":[{"checksum":"2b45828d854a253b14bf7aa196ec55e9","success":1,"date_created":"2023-11-14T13:12:12Z","date_updated":"2023-11-14T13:12:12Z","relation":"main_file","file_id":"14535","content_type":"application/pdf","file_size":851626,"creator":"dernst","access_level":"open_access","file_name":"2023_ArchiveRationalMechAnalysis_Benedikter.pdf"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13225","intvolume":" 247","ddc":["510"],"title":"Correlation energy of a weakly interacting Fermi gas with large interaction potential","status":"public","article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","day":"01","scopus_import":"1","date_published":"2023-08-01T00:00:00Z","citation":{"mla":"Benedikter, Niels P., et al. “Correlation Energy of a Weakly Interacting Fermi Gas with Large Interaction Potential.” Archive for Rational Mechanics and Analysis, vol. 247, no. 4, 65, Springer Nature, 2023, doi:10.1007/s00205-023-01893-6.","short":"N.P. Benedikter, M. Porta, B. Schlein, R. Seiringer, Archive for Rational Mechanics and Analysis 247 (2023).","chicago":"Benedikter, Niels P, Marcello Porta, Benjamin Schlein, and Robert Seiringer. “Correlation Energy of a Weakly Interacting Fermi Gas with Large Interaction Potential.” Archive for Rational Mechanics and Analysis. Springer Nature, 2023. https://doi.org/10.1007/s00205-023-01893-6.","ama":"Benedikter NP, Porta M, Schlein B, Seiringer R. Correlation energy of a weakly interacting Fermi gas with large interaction potential. Archive for Rational Mechanics and Analysis. 2023;247(4). doi:10.1007/s00205-023-01893-6","ista":"Benedikter NP, Porta M, Schlein B, Seiringer R. 2023. Correlation energy of a weakly interacting Fermi gas with large interaction potential. Archive for Rational Mechanics and Analysis. 247(4), 65.","ieee":"N. P. Benedikter, M. Porta, B. Schlein, and R. Seiringer, “Correlation energy of a weakly interacting Fermi gas with large interaction potential,” Archive for Rational Mechanics and Analysis, vol. 247, no. 4. Springer Nature, 2023.","apa":"Benedikter, N. P., Porta, M., Schlein, B., & Seiringer, R. (2023). Correlation energy of a weakly interacting Fermi gas with large interaction potential. Archive for Rational Mechanics and Analysis. Springer Nature. https://doi.org/10.1007/s00205-023-01893-6"},"publication":"Archive for Rational Mechanics and Analysis","article_type":"original","ec_funded":1,"file_date_updated":"2023-11-14T13:12:12Z","article_number":"65","author":[{"last_name":"Benedikter","first_name":"Niels P","orcid":"0000-0002-1071-6091","id":"3DE6C32A-F248-11E8-B48F-1D18A9856A87","full_name":"Benedikter, Niels P"},{"first_name":"Marcello","last_name":"Porta","full_name":"Porta, Marcello"},{"full_name":"Schlein, Benjamin","first_name":"Benjamin","last_name":"Schlein"},{"full_name":"Seiringer, Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6781-0521","first_name":"Robert","last_name":"Seiringer"}],"volume":247,"date_updated":"2023-12-13T11:31:14Z","date_created":"2023-07-16T22:01:08Z","year":"2023","acknowledgement":"RS was supported by the European Research Council under the European Union’s Horizon 2020 research and innovation programme (Grant Agreement No. 694227). MP acknowledges financial support from the European Research Council under the European Union’s Horizon 2020 research and innovation programme (ERC StG MaMBoQ, Grant Agreement No. 802901). BS acknowledges financial support from the NCCR SwissMAP, from the Swiss National Science Foundation through the Grant “Dynamical and energetic properties of Bose-Einstein condensates” and from the European Research Council through the ERC AdG CLaQS (Grant Agreement No. 834782). NB and MP were supported by Gruppo Nazionale per la Fisica Matematica (GNFM) of Italy. NB was supported by the European Research Council’s Starting Grant FERMIMATH (Grant Agreement No. 101040991).\r\nOpen access funding provided by Università degli Studi di Milano within the CRUI-CARE Agreement.","department":[{"_id":"RoSe"}],"publisher":"Springer Nature","publication_status":"published","publication_identifier":{"eissn":["1432-0673"],"issn":["0003-9527"]},"month":"08","doi":"10.1007/s00205-023-01893-6","language":[{"iso":"eng"}],"external_id":{"arxiv":["2106.13185"],"isi":["001024369000001"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"project":[{"name":"Analysis of quantum many-body systems","call_identifier":"H2020","grant_number":"694227","_id":"25C6DC12-B435-11E9-9278-68D0E5697425"}],"isi":1,"quality_controlled":"1"},{"oa_version":"Published Version","_id":"13226","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Weak Edgeworth expansion for the mean-field Bose gas","status":"public","intvolume":" 113","abstract":[{"text":"We consider the ground state and the low-energy excited states of a system of N identical bosons with interactions in the mean-field scaling regime. For the ground state, we derive a weak Edgeworth expansion for the fluctuations of bounded one-body operators, which yields corrections to a central limit theorem to any order in 1/N−−√. For suitable excited states, we show that the limiting distribution is a polynomial times a normal distribution, and that higher-order corrections are given by an Edgeworth-type expansion.","lang":"eng"}],"issue":"4","type":"journal_article","date_published":"2023-07-03T00:00:00Z","publication":"Letters in Mathematical Physics","citation":{"ieee":"L. Bossmann and S. P. Petrat, “Weak Edgeworth expansion for the mean-field Bose gas,” Letters in Mathematical Physics, vol. 113, no. 4. Springer Nature, 2023.","apa":"Bossmann, L., & Petrat, S. P. (2023). Weak Edgeworth expansion for the mean-field Bose gas. Letters in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s11005-023-01698-4","ista":"Bossmann L, Petrat SP. 2023. Weak Edgeworth expansion for the mean-field Bose gas. Letters in Mathematical Physics. 113(4), 77.","ama":"Bossmann L, Petrat SP. Weak Edgeworth expansion for the mean-field Bose gas. Letters in Mathematical Physics. 2023;113(4). doi:10.1007/s11005-023-01698-4","chicago":"Bossmann, Lea, and Sören P Petrat. “Weak Edgeworth Expansion for the Mean-Field Bose Gas.” Letters in Mathematical Physics. Springer Nature, 2023. https://doi.org/10.1007/s11005-023-01698-4.","short":"L. Bossmann, S.P. Petrat, Letters in Mathematical Physics 113 (2023).","mla":"Bossmann, Lea, and Sören P. Petrat. “Weak Edgeworth Expansion for the Mean-Field Bose Gas.” Letters in Mathematical Physics, vol. 113, no. 4, 77, Springer Nature, 2023, doi:10.1007/s11005-023-01698-4."},"article_type":"original","day":"03","article_processing_charge":"Yes (via OA deal)","scopus_import":"1","author":[{"last_name":"Bossmann","first_name":"Lea","orcid":"0000-0002-6854-1343","id":"A2E3BCBE-5FCC-11E9-AA4B-76F3E5697425","full_name":"Bossmann, Lea"},{"full_name":"Petrat, Sören P","orcid":"0000-0002-9166-5889","id":"40AC02DC-F248-11E8-B48F-1D18A9856A87","last_name":"Petrat","first_name":"Sören P"}],"date_created":"2023-07-16T22:01:08Z","date_updated":"2023-12-13T11:31:50Z","volume":113,"acknowledgement":"It is a pleasure to thank Martin Kolb, Simone Rademacher, Robert Seiringer and Stefan Teufel for helpful discussions. Moreover, we thank the referee for many constructive comments. L.B. gratefully acknowledges funding from the German Research Foundation within the Munich Center of Quantum Science and Technology (EXC 2111) and from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411. We thank the Mathematical Research Institute Oberwolfach, where part of this work was done, for their hospitality.\r\nOpen Access funding enabled and organized by Projekt DEAL.","year":"2023","publication_status":"published","department":[{"_id":"RoSe"}],"publisher":"Springer Nature","ec_funded":1,"article_number":"77","doi":"10.1007/s11005-023-01698-4","language":[{"iso":"eng"}],"external_id":{"isi":["001022878900002"],"arxiv":["2208.00199"]},"quality_controlled":"1","isi":1,"project":[{"grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020"}],"month":"07","publication_identifier":{"eissn":["1573-0530"],"issn":["0377-9017"]}},{"scopus_import":"1","day":"05","has_accepted_license":"1","article_processing_charge":"No","article_type":"original","publication":"Nature Communications","citation":{"ieee":"F. Hassani, M. Peruzzo, L. Kapoor, A. Trioni, M. Zemlicka, and J. M. Fink, “Inductively shunted transmons exhibit noise insensitive plasmon states and a fluxon decay exceeding 3 hours,” Nature Communications, vol. 14. Springer Nature, 2023.","apa":"Hassani, F., Peruzzo, M., Kapoor, L., Trioni, A., Zemlicka, M., & Fink, J. M. (2023). Inductively shunted transmons exhibit noise insensitive plasmon states and a fluxon decay exceeding 3 hours. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-023-39656-2","ista":"Hassani F, Peruzzo M, Kapoor L, Trioni A, Zemlicka M, Fink JM. 2023. Inductively shunted transmons exhibit noise insensitive plasmon states and a fluxon decay exceeding 3 hours. Nature Communications. 14, 3968.","ama":"Hassani F, Peruzzo M, Kapoor L, Trioni A, Zemlicka M, Fink JM. Inductively shunted transmons exhibit noise insensitive plasmon states and a fluxon decay exceeding 3 hours. Nature Communications. 2023;14. doi:10.1038/s41467-023-39656-2","chicago":"Hassani, Farid, Matilda Peruzzo, Lucky Kapoor, Andrea Trioni, Martin Zemlicka, and Johannes M Fink. “Inductively Shunted Transmons Exhibit Noise Insensitive Plasmon States and a Fluxon Decay Exceeding 3 Hours.” Nature Communications. Springer Nature, 2023. https://doi.org/10.1038/s41467-023-39656-2.","short":"F. Hassani, M. Peruzzo, L. Kapoor, A. Trioni, M. Zemlicka, J.M. Fink, Nature Communications 14 (2023).","mla":"Hassani, Farid, et al. “Inductively Shunted Transmons Exhibit Noise Insensitive Plasmon States and a Fluxon Decay Exceeding 3 Hours.” Nature Communications, vol. 14, 3968, Springer Nature, 2023, doi:10.1038/s41467-023-39656-2."},"date_published":"2023-07-05T00:00:00Z","type":"journal_article","abstract":[{"text":"Currently available quantum processors are dominated by noise, which severely limits their applicability and motivates the search for new physical qubit encodings. In this work, we introduce the inductively shunted transmon, a weakly flux-tunable superconducting qubit that offers charge offset protection for all levels and a 20-fold reduction in flux dispersion compared to the state-of-the-art resulting in a constant coherence over a full flux quantum. The parabolic confinement provided by the inductive shunt as well as the linearity of the geometric superinductor facilitates a high-power readout that resolves quantum jumps with a fidelity and QND-ness of >90% and without the need for a Josephson parametric amplifier. Moreover, the device reveals quantum tunneling physics between the two prepared fluxon ground states with a measured average decay time of up to 3.5 h. In the future, fast time-domain control of the transition matrix elements could offer a new path forward to also achieve full qubit control in the decay-protected fluxon basis.","lang":"eng"}],"status":"public","ddc":["530"],"title":"Inductively shunted transmons exhibit noise insensitive plasmon states and a fluxon decay exceeding 3 hours","intvolume":" 14","_id":"13227","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","file":[{"file_size":2899592,"content_type":"application/pdf","creator":"dernst","file_name":"2023_NatureComm_Hassani.pdf","access_level":"open_access","date_updated":"2023-07-18T08:43:07Z","date_created":"2023-07-18T08:43:07Z","checksum":"a85773b5fe23516f60f7d5d31b55c200","success":1,"relation":"main_file","file_id":"13248"}],"month":"07","publication_identifier":{"eissn":["2041-1723"]},"quality_controlled":"1","isi":1,"project":[{"_id":"26927A52-B435-11E9-9278-68D0E5697425","grant_number":"F07105","name":"Integrating superconducting quantum circuits","call_identifier":"FWF"},{"_id":"2622978C-B435-11E9-9278-68D0E5697425","name":"Hybrid Semiconductor - Superconductor Quantum Devices"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"pmid":["37407570"],"isi":["001024729900009"]},"oa":1,"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"NanoFab"}],"language":[{"iso":"eng"}],"doi":"10.1038/s41467-023-39656-2","article_number":"3968","file_date_updated":"2023-07-18T08:43:07Z","publication_status":"published","publisher":"Springer Nature","department":[{"_id":"JoFi"}],"acknowledgement":"The authors thank J. Koch for discussions and support with the scQubits python package, I. Rozhansky and A. Poddubny for important insights into photon-assisted tunneling, S. Barzanjeh and G. Arnold for theory, E. Redchenko, S. Pepic, the MIBA workshop and the IST nanofabrication facility for technical contributions, as well as L. Drmic, P. Zielinski and R. Sett for software development. We acknowledge the prompt support of Quantum Machines to implement active state preparation with their OPX+. This work was supported by a NOMIS foundation research grant (J.F.), the Austrian Science Fund (FWF) through BeyondC F7105 (J.F.) and IST Austria.","year":"2023","pmid":1,"date_created":"2023-07-16T22:01:08Z","date_updated":"2023-12-13T11:32:25Z","volume":14,"author":[{"full_name":"Hassani, Farid","last_name":"Hassani","first_name":"Farid","orcid":"0000-0001-6937-5773","id":"2AED110C-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Matilda","last_name":"Peruzzo","id":"3F920B30-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-3415-4628","full_name":"Peruzzo, Matilda"},{"first_name":"Lucky","last_name":"Kapoor","id":"84b9700b-15b2-11ec-abd3-831089e67615","full_name":"Kapoor, Lucky"},{"id":"42F71B44-F248-11E8-B48F-1D18A9856A87","first_name":"Andrea","last_name":"Trioni","full_name":"Trioni, Andrea"},{"full_name":"Zemlicka, Martin","id":"2DCF8DE6-F248-11E8-B48F-1D18A9856A87","last_name":"Zemlicka","first_name":"Martin"},{"orcid":"0000-0001-8112-028X","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","last_name":"Fink","first_name":"Johannes M","full_name":"Fink, Johannes M"}]},{"month":"05","publication_identifier":{"eissn":["2475-4218"],"isbn":["9798350301496"]},"external_id":{"arxiv":["2212.01572"],"isi":["001031733100053"]},"oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2212.01572"}],"quality_controlled":"1","isi":1,"project":[{"_id":"059876FA-7A3F-11EA-A408-12923DDC885E","name":"Prix Lopez-Loretta 2019 - Marco Mondelli"}],"conference":{"name":"ITW: Information Theory Workshop","location":"Saint-Malo, France","start_date":"2023-04-23","end_date":"2023-04-28"},"doi":"10.1109/ITW55543.2023.10160238","language":[{"iso":"eng"}],"acknowledgement":"Marco Mondelli was partially supported by the 2019 Lopez-Loreta prize.","year":"2023","publication_status":"published","department":[{"_id":"MaMo"}],"publisher":"Institute of Electrical and Electronics Engineers","author":[{"full_name":"Xu, Yizhou","first_name":"Yizhou","last_name":"Xu"},{"first_name":"Tian Qi","last_name":"Hou","full_name":"Hou, Tian Qi"},{"full_name":"Liang, Shan Suo","last_name":"Liang","first_name":"Shan Suo"},{"id":"27EB676C-8706-11E9-9510-7717E6697425","orcid":"0000-0002-3242-7020","first_name":"Marco","last_name":"Mondelli","full_name":"Mondelli, Marco"}],"date_created":"2023-07-30T22:01:04Z","date_updated":"2023-12-13T11:35:46Z","scopus_import":"1","day":"01","article_processing_charge":"No","publication":"2023 IEEE Information Theory Workshop","citation":{"apa":"Xu, Y., Hou, T. Q., Liang, S. S., & Mondelli, M. (2023). Approximate message passing for multi-layer estimation in rotationally invariant models. In 2023 IEEE Information Theory Workshop (pp. 294–298). Saint-Malo, France: Institute of Electrical and Electronics Engineers. https://doi.org/10.1109/ITW55543.2023.10160238","ieee":"Y. Xu, T. Q. Hou, S. S. Liang, and M. Mondelli, “Approximate message passing for multi-layer estimation in rotationally invariant models,” in 2023 IEEE Information Theory Workshop, Saint-Malo, France, 2023, pp. 294–298.","ista":"Xu Y, Hou TQ, Liang SS, Mondelli M. 2023. Approximate message passing for multi-layer estimation in rotationally invariant models. 2023 IEEE Information Theory Workshop. ITW: Information Theory Workshop, 294–298.","ama":"Xu Y, Hou TQ, Liang SS, Mondelli M. Approximate message passing for multi-layer estimation in rotationally invariant models. In: 2023 IEEE Information Theory Workshop. Institute of Electrical and Electronics Engineers; 2023:294-298. doi:10.1109/ITW55543.2023.10160238","chicago":"Xu, Yizhou, Tian Qi Hou, Shan Suo Liang, and Marco Mondelli. “Approximate Message Passing for Multi-Layer Estimation in Rotationally Invariant Models.” In 2023 IEEE Information Theory Workshop, 294–98. Institute of Electrical and Electronics Engineers, 2023. https://doi.org/10.1109/ITW55543.2023.10160238.","short":"Y. Xu, T.Q. Hou, S.S. Liang, M. Mondelli, in:, 2023 IEEE Information Theory Workshop, Institute of Electrical and Electronics Engineers, 2023, pp. 294–298.","mla":"Xu, Yizhou, et al. “Approximate Message Passing for Multi-Layer Estimation in Rotationally Invariant Models.” 2023 IEEE Information Theory Workshop, Institute of Electrical and Electronics Engineers, 2023, pp. 294–98, doi:10.1109/ITW55543.2023.10160238."},"page":"294-298","date_published":"2023-05-01T00:00:00Z","type":"conference","abstract":[{"lang":"eng","text":"We consider the problem of reconstructing the signal and the hidden variables from observations coming from a multi-layer network with rotationally invariant weight matrices. The multi-layer structure models inference from deep generative priors, and the rotational invariance imposed on the weights generalizes the i.i.d. Gaussian assumption by allowing for a complex correlation structure, which is typical in applications. In this work, we present a new class of approximate message passing (AMP) algorithms and give a state evolution recursion which precisely characterizes their performance in the large system limit. In contrast with the existing multi-layer VAMP (ML-VAMP) approach, our proposed AMP – dubbed multilayer rotationally invariant generalized AMP (ML-RI-GAMP) – provides a natural generalization beyond Gaussian designs, in the sense that it recovers the existing Gaussian AMP as a special case. Furthermore, ML-RI-GAMP exhibits a significantly lower complexity than ML-VAMP, as the computationally intensive singular value decomposition is replaced by an estimation of the moments of the design matrices. Finally, our numerical results show that this complexity gain comes at little to no cost in the performance of the algorithm."}],"_id":"13321","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Approximate message passing for multi-layer estimation in rotationally invariant models","status":"public","oa_version":"Preprint"},{"language":[{"iso":"eng"}],"doi":"10.1145/3575859","isi":1,"quality_controlled":"1","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2201.02374","open_access":"1"}],"oa":1,"external_id":{"arxiv":["2201.02374"],"isi":["001018739600002"]},"month":"03","publication_identifier":{"issn":["0730-0301"],"eissn":["1557-7368"]},"date_created":"2023-07-23T22:01:13Z","date_updated":"2023-12-13T11:34:59Z","volume":42,"author":[{"full_name":"Zhong, Fanchao","first_name":"Fanchao","last_name":"Zhong"},{"full_name":"Xu, Yonglai","first_name":"Yonglai","last_name":"Xu"},{"full_name":"Zhao, Haisen","last_name":"Zhao","first_name":"Haisen","orcid":"0000-0002-6389-1045","id":"fb7f793a-80d1-11eb-8869-d56e5b2a8ff4"},{"full_name":"Lu, Lin","first_name":"Lin","last_name":"Lu"}],"publication_status":"published","department":[{"_id":"BeBi"}],"publisher":"Association for Computing Machinery","acknowledgement":"This work was supported in part by grants from the NSFC (61972232), Science and Technology Program of Shenzhen, China (CJGJZD20200617102202007). ","year":"2023","article_number":"26","date_published":"2023-03-17T00:00:00Z","article_type":"original","publication":"ACM Transactions on Graphics","citation":{"chicago":"Zhong, Fanchao, Yonglai Xu, Haisen Zhao, and Lin Lu. “As-Continuous-As-Possible Extrusion-Based Fabrication of Surface Models.” ACM Transactions on Graphics. Association for Computing Machinery, 2023. https://doi.org/10.1145/3575859.","short":"F. Zhong, Y. Xu, H. Zhao, L. Lu, ACM Transactions on Graphics 42 (2023).","mla":"Zhong, Fanchao, et al. “As-Continuous-As-Possible Extrusion-Based Fabrication of Surface Models.” ACM Transactions on Graphics, vol. 42, no. 3, 26, Association for Computing Machinery, 2023, doi:10.1145/3575859.","apa":"Zhong, F., Xu, Y., Zhao, H., & Lu, L. (2023). As-Continuous-As-Possible extrusion-based fabrication of surface models. ACM Transactions on Graphics. Association for Computing Machinery. https://doi.org/10.1145/3575859","ieee":"F. Zhong, Y. Xu, H. Zhao, and L. Lu, “As-Continuous-As-Possible extrusion-based fabrication of surface models,” ACM Transactions on Graphics, vol. 42, no. 3. Association for Computing Machinery, 2023.","ista":"Zhong F, Xu Y, Zhao H, Lu L. 2023. As-Continuous-As-Possible extrusion-based fabrication of surface models. ACM Transactions on Graphics. 42(3), 26.","ama":"Zhong F, Xu Y, Zhao H, Lu L. As-Continuous-As-Possible extrusion-based fabrication of surface models. ACM Transactions on Graphics. 2023;42(3). doi:10.1145/3575859"},"day":"17","article_processing_charge":"No","scopus_import":"1","oa_version":"Preprint","status":"public","title":"As-Continuous-As-Possible extrusion-based fabrication of surface models","intvolume":" 42","_id":"13265","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"In this study, we propose a computational framework for optimizing the continuity of the toolpath in fabricating surface models on an extrusion-based 3D printer. Toolpath continuity is a critical issue that influences both the quality and the efficiency of extrusion-based fabrication. Transfer moves lead to rough and bumpy surfaces, where this phenomenon worsens for materials with large viscosity, like clay. The effects of continuity on the surface models are even more severe in terms of the quality of the surface and the stability of the model. We introduce a criterion called the one–path patch (OPP) to represent a patch on the surface of the shell that can be traversed along one path by considering the constraints on fabrication. We study the properties of the OPPs and their merging operations to propose a bottom-up OPP merging procedure to decompose the given shell surface into a minimal number of OPPs, and to generate the “as-continuous-as-possible” (ACAP) toolpath. Furthermore, we augment the path planning algorithm with a curved-layer printing scheme that reduces staircase defects and improves the continuity of the toolpath by connecting multiple segments. We evaluated the ACAP algorithm on ceramic and thermoplastic materials, and the results showed that it improves the fabrication of surface models in terms of both efficiency and surface quality."}],"issue":"3","type":"journal_article"},{"article_type":"original","citation":{"mla":"Volberg, Alexander, and Haonan Zhang. “Noncommutative Bohnenblust–Hille Inequalities.” Mathematische Annalen, Springer Nature, 2023, doi:10.1007/s00208-023-02680-0.","short":"A. Volberg, H. Zhang, Mathematische Annalen (2023).","chicago":"Volberg, Alexander, and Haonan Zhang. “Noncommutative Bohnenblust–Hille Inequalities.” Mathematische Annalen. Springer Nature, 2023. https://doi.org/10.1007/s00208-023-02680-0.","ama":"Volberg A, Zhang H. Noncommutative Bohnenblust–Hille inequalities. Mathematische Annalen. 2023. doi:10.1007/s00208-023-02680-0","ista":"Volberg A, Zhang H. 2023. Noncommutative Bohnenblust–Hille inequalities. Mathematische Annalen.","ieee":"A. Volberg and H. Zhang, “Noncommutative Bohnenblust–Hille inequalities,” Mathematische Annalen. Springer Nature, 2023.","apa":"Volberg, A., & Zhang, H. (2023). Noncommutative Bohnenblust–Hille inequalities. Mathematische Annalen. Springer Nature. https://doi.org/10.1007/s00208-023-02680-0"},"publication":"Mathematische Annalen","date_published":"2023-07-24T00:00:00Z","scopus_import":"1","article_processing_charge":"No","day":"24","status":"public","title":"Noncommutative Bohnenblust–Hille inequalities","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13318","oa_version":"Published Version","type":"journal_article","abstract":[{"lang":"eng","text":"Bohnenblust–Hille inequalities for Boolean cubes have been proven with dimension-free constants that grow subexponentially in the degree (Defant et al. in Math Ann 374(1):653–680, 2019). Such inequalities have found great applications in learning low-degree Boolean functions (Eskenazis and Ivanisvili in Proceedings of the 54th annual ACM SIGACT symposium on theory of computing, pp 203–207, 2022). Motivated by learning quantum observables, a qubit analogue of Bohnenblust–Hille inequality for Boolean cubes was recently conjectured in Rouzé et al. (Quantum Talagrand, KKL and Friedgut’s theorems and the learnability of quantum Boolean functions, 2022. arXiv preprint arXiv:2209.07279). The conjecture was resolved in Huang et al. (Learning to predict arbitrary quantum processes, 2022. arXiv preprint arXiv:2210.14894). In this paper, we give a new proof of these Bohnenblust–Hille inequalities for qubit system with constants that are dimension-free and of exponential growth in the degree. As a consequence, we obtain a junta theorem for low-degree polynomials. Using similar ideas, we also study learning problems of low degree quantum observables and Bohr’s radius phenomenon on quantum Boolean cubes."}],"project":[{"name":"Curvature-dimension in noncommutative analysis","grant_number":"M03337","_id":"eb958bca-77a9-11ec-83b8-c565cb50d8d6"}],"isi":1,"quality_controlled":"1","main_file_link":[{"url":"https://doi.org/10.1007/s00208-023-02680-0","open_access":"1"}],"external_id":{"isi":["001035665500001"],"arxiv":["2210.14468"]},"oa":1,"language":[{"iso":"eng"}],"doi":"10.1007/s00208-023-02680-0","publication_identifier":{"issn":["0025-5831"],"eissn":["1432-1807"]},"month":"07","department":[{"_id":"JaMa"}],"publisher":"Springer Nature","publication_status":"epub_ahead","year":"2023","acknowledgement":"The research of A.V. is supported by NSF DMS-1900286, DMS-2154402 and by Hausdorff Center for Mathematics. H.Z. is supported by the Lise Meitner fellowship, Austrian Science Fund (FWF) M3337. This work is partially supported by NSF DMS-1929284 while both authors were in residence at the Institute for Computational and Experimental Research in Mathematics in Providence, RI, during the Harmonic Analysis and Convexity program.","date_updated":"2023-12-13T11:36:20Z","date_created":"2023-07-30T22:01:03Z","author":[{"first_name":"Alexander","last_name":"Volberg","full_name":"Volberg, Alexander"},{"first_name":"Haonan","last_name":"Zhang","id":"D8F41E38-9E66-11E9-A9E2-65C2E5697425","full_name":"Zhang, Haonan"}]},{"date_created":"2023-07-23T22:01:15Z","date_updated":"2023-12-13T11:33:46Z","author":[{"full_name":"Zhang, Haonan","id":"D8F41E38-9E66-11E9-A9E2-65C2E5697425","last_name":"Zhang","first_name":"Haonan"}],"publication_status":"epub_ahead","department":[{"_id":"JaMa"}],"publisher":"Springer Nature","year":"2023","acknowledgement":"I am grateful to Boguslaw Zegarliński for asking me the questions in [3] and for helpful communication. I also want to thank Paata Ivanisvili for drawing [25] to my attention and for useful correspondence. Many thanks to the anonymous referee for the valuable comments and for pointing out some errors in an earlier version of the paper. This work is partially supported by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 754411 and the Lise Meitner fellowship, Austrian Science Fund (FWF) M3337.","ec_funded":1,"language":[{"iso":"eng"}],"doi":"10.1007/s00023-023-01345-7","quality_controlled":"1","isi":1,"project":[{"name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425"},{"_id":"eb958bca-77a9-11ec-83b8-c565cb50d8d6","grant_number":"M03337","name":"Curvature-dimension in noncommutative analysis"}],"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2108.05785","open_access":"1"}],"oa":1,"external_id":{"isi":["001025709100001"],"arxiv":["2108.05785"]},"month":"07","publication_identifier":{"issn":["1424-0637"]},"oa_version":"Preprint","title":"Some convexity and monotonicity results of trace functionals","status":"public","_id":"13271","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","abstract":[{"lang":"eng","text":"In this paper, we prove the convexity of trace functionals (A,B,C)↦Tr|BpACq|s,\r\nfor parameters (p, q, s) that are best possible, where B and C are any n-by-n positive-definite matrices, and A is any n-by-n matrix. We also obtain the monotonicity versions of trace functionals of this type. As applications, we extend some results in Carlen et al. (Linear Algebra Appl 490:174–185, 2016), Hiai and Petz (Publ Res Inst Math Sci 48(3):525-542, 2012) and resolve a conjecture in Al-Rashed and Zegarliński (Infin Dimens Anal Quantum Probab Relat Top 17(4):1450029, 2014) in the matrix setting. Other conjectures in Al-Rashed and Zegarliński (Infin Dimens Anal Quantum Probab Relat Top 17(4):1450029, 2014) will also be discussed. We also show that some related trace functionals are not concave in general. Such concavity results were expected to hold in different problems."}],"type":"journal_article","date_published":"2023-07-08T00:00:00Z","article_type":"original","publication":"Annales Henri Poincare","citation":{"apa":"Zhang, H. (2023). Some convexity and monotonicity results of trace functionals. Annales Henri Poincare. Springer Nature. https://doi.org/10.1007/s00023-023-01345-7","ieee":"H. Zhang, “Some convexity and monotonicity results of trace functionals,” Annales Henri Poincare. Springer Nature, 2023.","ista":"Zhang H. 2023. Some convexity and monotonicity results of trace functionals. Annales Henri Poincare.","ama":"Zhang H. Some convexity and monotonicity results of trace functionals. Annales Henri Poincare. 2023. doi:10.1007/s00023-023-01345-7","chicago":"Zhang, Haonan. “Some Convexity and Monotonicity Results of Trace Functionals.” Annales Henri Poincare. Springer Nature, 2023. https://doi.org/10.1007/s00023-023-01345-7.","short":"H. Zhang, Annales Henri Poincare (2023).","mla":"Zhang, Haonan. “Some Convexity and Monotonicity Results of Trace Functionals.” Annales Henri Poincare, Springer Nature, 2023, doi:10.1007/s00023-023-01345-7."},"day":"08","article_processing_charge":"No","scopus_import":"1"},{"department":[{"_id":"KrCh"}],"publisher":"Springer Nature","publication_status":"published","pmid":1,"acknowledgement":"This work was supported by the European Research Council CoG 863818 (ForM-SMArt) (to K.C.), the European Research Council Starting Grant 850529: E-DIRECT (to C.H.), the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie Grant Agreement #754411 and the French Agence Nationale de la Recherche (under the Investissement d’Avenir programme, ANR-17-EURE-0010) (to M.K.).","year":"2023","volume":14,"date_created":"2023-07-23T22:01:11Z","date_updated":"2023-12-13T11:42:38Z","related_material":{"record":[{"id":"13336","status":"public","relation":"research_data"}]},"author":[{"id":"4E21749C-F248-11E8-B48F-1D18A9856A87","last_name":"Kleshnina","first_name":"Maria","full_name":"Kleshnina, Maria"},{"full_name":"Hilbe, Christian","id":"2FDF8F3C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5116-955X","first_name":"Christian","last_name":"Hilbe"},{"full_name":"Simsa, Stepan","first_name":"Stepan","last_name":"Simsa","id":"409d615c-2f95-11ee-b934-90a352102c1e","orcid":"0000-0001-6687-1210"},{"id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","first_name":"Krishnendu","last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu"},{"full_name":"Nowak, Martin A.","first_name":"Martin A.","last_name":"Nowak"}],"article_number":"4153","ec_funded":1,"file_date_updated":"2023-07-31T11:32:36Z","project":[{"_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","grant_number":"863818","call_identifier":"H2020","name":"Formal Methods for Stochastic Models: Algorithms and Applications"},{"_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411","call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships"}],"quality_controlled":"1","isi":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["001029450400031"],"pmid":["37438341"]},"oa":1,"language":[{"iso":"eng"}],"doi":"10.1038/s41467-023-39625-9","publication_identifier":{"eissn":["2041-1723"]},"month":"07","intvolume":" 14","status":"public","title":"The effect of environmental information on evolution of cooperation in stochastic games","ddc":["000"],"_id":"13258","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"content_type":"application/pdf","file_size":1601682,"creator":"dernst","access_level":"open_access","file_name":"2023_NatureComm_Kleshnina.pdf","checksum":"5aceefdfe76686267b93ae4fe81899f1","success":1,"date_updated":"2023-07-31T11:32:36Z","date_created":"2023-07-31T11:32:36Z","relation":"main_file","file_id":"13337"}],"oa_version":"Published Version","type":"journal_article","abstract":[{"lang":"eng","text":"Many human interactions feature the characteristics of social dilemmas where individual actions have consequences for the group and the environment. The feedback between behavior and environment can be studied with the framework of stochastic games. In stochastic games, the state of the environment can change, depending on the choices made by group members. Past work suggests that such feedback can reinforce cooperative behaviors. In particular, cooperation can evolve in stochastic games even if it is infeasible in each separate repeated game. In stochastic games, participants have an interest in conditioning their strategies on the state of the environment. Yet in many applications, precise information about the state could be scarce. Here, we study how the availability of information (or lack thereof) shapes evolution of cooperation. Already for simple examples of two state games we find surprising effects. In some cases, cooperation is only possible if there is precise information about the state of the environment. In other cases, cooperation is most abundant when there is no information about the state of the environment. We systematically analyze all stochastic games of a given complexity class, to determine when receiving information about the environment is better, neutral, or worse for evolution of cooperation."}],"article_type":"original","citation":{"chicago":"Kleshnina, Maria, Christian Hilbe, Stepan Simsa, Krishnendu Chatterjee, and Martin A. Nowak. “The Effect of Environmental Information on Evolution of Cooperation in Stochastic Games.” Nature Communications. Springer Nature, 2023. https://doi.org/10.1038/s41467-023-39625-9.","short":"M. Kleshnina, C. Hilbe, S. Simsa, K. Chatterjee, M.A. Nowak, Nature Communications 14 (2023).","mla":"Kleshnina, Maria, et al. “The Effect of Environmental Information on Evolution of Cooperation in Stochastic Games.” Nature Communications, vol. 14, 4153, Springer Nature, 2023, doi:10.1038/s41467-023-39625-9.","ieee":"M. Kleshnina, C. Hilbe, S. Simsa, K. Chatterjee, and M. A. Nowak, “The effect of environmental information on evolution of cooperation in stochastic games,” Nature Communications, vol. 14. Springer Nature, 2023.","apa":"Kleshnina, M., Hilbe, C., Simsa, S., Chatterjee, K., & Nowak, M. A. (2023). The effect of environmental information on evolution of cooperation in stochastic games. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-023-39625-9","ista":"Kleshnina M, Hilbe C, Simsa S, Chatterjee K, Nowak MA. 2023. The effect of environmental information on evolution of cooperation in stochastic games. Nature Communications. 14, 4153.","ama":"Kleshnina M, Hilbe C, Simsa S, Chatterjee K, Nowak MA. The effect of environmental information on evolution of cooperation in stochastic games. Nature Communications. 2023;14. doi:10.1038/s41467-023-39625-9"},"publication":"Nature Communications","date_published":"2023-07-12T00:00:00Z","scopus_import":"1","article_processing_charge":"Yes","has_accepted_license":"1","day":"12"},{"publication_status":"published","publisher":"Oxford Academic","department":[{"_id":"ToHe"}],"acknowledgement":"This work was supported by L’Institut Carnot STAR, Marseille, France, and by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. [101034413].","year":"2023","pmid":1,"date_updated":"2023-12-13T11:41:52Z","date_created":"2023-07-23T22:01:12Z","volume":39,"author":[{"full_name":"Trinh, Van Giang","first_name":"Van Giang","last_name":"Trinh"},{"last_name":"Benhamou","first_name":"Belaid","full_name":"Benhamou, Belaid"},{"full_name":"Henzinger, Thomas A","orcid":"0000-0002-2985-7724","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","last_name":"Henzinger","first_name":"Thomas A"},{"first_name":"Samuel","last_name":"Pastva","id":"07c5ea74-f61c-11ec-a664-aa7c5d957b2b","orcid":"0000-0003-1993-0331","full_name":"Pastva, Samuel"}],"related_material":{"link":[{"relation":"software","url":"https://github.com/giang-trinh/trap-mvn"}]},"file_date_updated":"2023-07-31T11:09:05Z","ec_funded":1,"quality_controlled":"1","isi":1,"project":[{"call_identifier":"H2020","name":"IST-BRIDGE: International postdoctoral program","_id":"fc2ed2f7-9c52-11eb-aca3-c01059dda49c","grant_number":"101034413"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["001027457000060"],"pmid":["37387165"]},"language":[{"iso":"eng"}],"doi":"10.1093/bioinformatics/btad262","month":"06","publication_identifier":{"eissn":["1367-4811"],"issn":["1367-4803"]},"title":"Trap spaces of multi-valued networks: Definition, computation, and applications","status":"public","ddc":["000"],"intvolume":" 39","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13263","file":[{"file_id":"13335","relation":"main_file","success":1,"checksum":"ba3abe1171df1958413b7c7f957f5486","date_created":"2023-07-31T11:09:05Z","date_updated":"2023-07-31T11:09:05Z","access_level":"open_access","file_name":"2023_Bioinformatics_Trinh.pdf","creator":"dernst","content_type":"application/pdf","file_size":641736}],"oa_version":"Published Version","type":"journal_article","abstract":[{"lang":"eng","text":"Motivation: Boolean networks are simple but efficient mathematical formalism for modelling complex biological systems. However, having only two levels of activation is sometimes not enough to fully capture the dynamics of real-world biological systems. Hence, the need for multi-valued networks (MVNs), a generalization of Boolean networks. Despite the importance of MVNs for modelling biological systems, only limited progress has been made on developing theories, analysis methods, and tools that can support them. In particular, the recent use of trap spaces in Boolean networks made a great impact on the field of systems biology, but there has been no similar concept defined and studied for MVNs to date.\r\n\r\nResults: In this work, we generalize the concept of trap spaces in Boolean networks to that in MVNs. We then develop the theory and the analysis methods for trap spaces in MVNs. In particular, we implement all proposed methods in a Python package called trapmvn. Not only showing the applicability of our approach via a realistic case study, we also evaluate the time efficiency of the method on a large collection of real-world models. The experimental results confirm the time efficiency, which we believe enables more accurate analysis on larger and more complex multi-valued models."}],"issue":"Supplement_1","article_type":"original","page":"i513-i522","publication":"Bioinformatics","citation":{"chicago":"Trinh, Van Giang, Belaid Benhamou, Thomas A Henzinger, and Samuel Pastva. “Trap Spaces of Multi-Valued Networks: Definition, Computation, and Applications.” Bioinformatics. Oxford Academic, 2023. https://doi.org/10.1093/bioinformatics/btad262.","short":"V.G. Trinh, B. Benhamou, T.A. Henzinger, S. Pastva, Bioinformatics 39 (2023) i513–i522.","mla":"Trinh, Van Giang, et al. “Trap Spaces of Multi-Valued Networks: Definition, Computation, and Applications.” Bioinformatics, vol. 39, no. Supplement_1, Oxford Academic, 2023, pp. i513–22, doi:10.1093/bioinformatics/btad262.","ieee":"V. G. Trinh, B. Benhamou, T. A. Henzinger, and S. Pastva, “Trap spaces of multi-valued networks: Definition, computation, and applications,” Bioinformatics, vol. 39, no. Supplement_1. Oxford Academic, pp. i513–i522, 2023.","apa":"Trinh, V. G., Benhamou, B., Henzinger, T. A., & Pastva, S. (2023). Trap spaces of multi-valued networks: Definition, computation, and applications. Bioinformatics. Oxford Academic. https://doi.org/10.1093/bioinformatics/btad262","ista":"Trinh VG, Benhamou B, Henzinger TA, Pastva S. 2023. Trap spaces of multi-valued networks: Definition, computation, and applications. Bioinformatics. 39(Supplement_1), i513–i522.","ama":"Trinh VG, Benhamou B, Henzinger TA, Pastva S. Trap spaces of multi-valued networks: Definition, computation, and applications. Bioinformatics. 2023;39(Supplement_1):i513-i522. doi:10.1093/bioinformatics/btad262"},"date_published":"2023-06-30T00:00:00Z","scopus_import":"1","day":"30","has_accepted_license":"1","article_processing_charge":"Yes"},{"external_id":{"pmid":["37477116"],"isi":["001035372800001"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"isi":1,"quality_controlled":"1","doi":"10.7554/eLife.84850","language":[{"iso":"eng"}],"month":"07","publication_identifier":{"eissn":["2050-084X"]},"year":"2023","acknowledgement":"This work was supported by JSPS KAKENHI grant #18K062291, and the Takeda Science Foundation to JYT., as well as JSPS KAKENHI grant #19K065710, the Takeda Science Foundation, and Life Science Foundation of Japan to JT.","pmid":1,"publication_status":"published","department":[{"_id":"DaSi"}],"publisher":"eLife Sciences Publications","author":[{"last_name":"Toshima","first_name":"Junko Y.","full_name":"Toshima, Junko Y."},{"last_name":"Tsukahara","first_name":"Ayana","full_name":"Tsukahara, Ayana"},{"first_name":"Makoto","last_name":"Nagano","full_name":"Nagano, Makoto"},{"first_name":"Takuro","last_name":"Tojima","full_name":"Tojima, Takuro"},{"orcid":"0000-0001-8323-8353","id":"3D224B9E-F248-11E8-B48F-1D18A9856A87","last_name":"Siekhaus","first_name":"Daria E","full_name":"Siekhaus, Daria E"},{"last_name":"Nakano","first_name":"Akihiko","full_name":"Nakano, Akihiko"},{"last_name":"Toshima","first_name":"Jiro","full_name":"Toshima, Jiro"}],"date_updated":"2023-12-13T11:37:36Z","date_created":"2023-07-30T22:01:02Z","volume":12,"article_number":"e84850","file_date_updated":"2023-07-31T07:43:00Z","publication":"eLife","citation":{"mla":"Toshima, Junko Y., et al. “The Yeast Endocytic Early/Sorting Compartment Exists as an Independent Sub-Compartment within the Trans-Golgi Network.” ELife, vol. 12, e84850, eLife Sciences Publications, 2023, doi:10.7554/eLife.84850.","short":"J.Y. Toshima, A. Tsukahara, M. Nagano, T. Tojima, D.E. Siekhaus, A. Nakano, J. Toshima, ELife 12 (2023).","chicago":"Toshima, Junko Y., Ayana Tsukahara, Makoto Nagano, Takuro Tojima, Daria E Siekhaus, Akihiko Nakano, and Jiro Toshima. “The Yeast Endocytic Early/Sorting Compartment Exists as an Independent Sub-Compartment within the Trans-Golgi Network.” ELife. eLife Sciences Publications, 2023. https://doi.org/10.7554/eLife.84850.","ama":"Toshima JY, Tsukahara A, Nagano M, et al. The yeast endocytic early/sorting compartment exists as an independent sub-compartment within the trans-Golgi network. eLife. 2023;12. doi:10.7554/eLife.84850","ista":"Toshima JY, Tsukahara A, Nagano M, Tojima T, Siekhaus DE, Nakano A, Toshima J. 2023. The yeast endocytic early/sorting compartment exists as an independent sub-compartment within the trans-Golgi network. eLife. 12, e84850.","ieee":"J. Y. Toshima et al., “The yeast endocytic early/sorting compartment exists as an independent sub-compartment within the trans-Golgi network,” eLife, vol. 12. eLife Sciences Publications, 2023.","apa":"Toshima, J. Y., Tsukahara, A., Nagano, M., Tojima, T., Siekhaus, D. E., Nakano, A., & Toshima, J. (2023). The yeast endocytic early/sorting compartment exists as an independent sub-compartment within the trans-Golgi network. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.84850"},"article_type":"original","date_published":"2023-07-21T00:00:00Z","scopus_import":"1","day":"21","article_processing_charge":"Yes","has_accepted_license":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13316","ddc":["570"],"title":"The yeast endocytic early/sorting compartment exists as an independent sub-compartment within the trans-Golgi network","status":"public","intvolume":" 12","file":[{"relation":"main_file","file_id":"13324","checksum":"2af111a00cf5e3a956f7f0fd13199b15","success":1,"date_created":"2023-07-31T07:43:00Z","date_updated":"2023-07-31T07:43:00Z","access_level":"open_access","file_name":"2023_eLife_Toshima.pdf","content_type":"application/pdf","file_size":11980913,"creator":"dernst"}],"oa_version":"Published Version","type":"journal_article","abstract":[{"text":"Although budding yeast has been extensively used as a model organism for studying organelle functions and intracellular vesicle trafficking, whether it possesses an independent endocytic early/sorting compartment that sorts endocytic cargos to the endo-lysosomal pathway or the recycling pathway has long been unclear. The structure and properties of the endocytic early/sorting compartment differ significantly between organisms; in plant cells, the trans-Golgi network (TGN) serves this role, whereas in mammalian cells a separate intracellular structure performs this function. The yeast syntaxin homolog Tlg2p, widely localizing to the TGN and endosomal compartments, is presumed to act as a Q-SNARE for endocytic vesicles, but which compartment is the direct target for endocytic vesicles remained unanswered. Here we demonstrate by high-speed and high-resolution 4D imaging of fluorescently labeled endocytic cargos that the Tlg2p-residing compartment within the TGN functions as the early/sorting compartment. After arriving here, endocytic cargos are recycled to the plasma membrane or transported to the yeast Rab5-residing endosomal compartment through the pathway requiring the clathrin adaptors GGAs. Interestingly, Gga2p predominantly localizes at the Tlg2p-residing compartment, and the deletion of GGAs has little effect on another TGN region where Sec7p is present but suppresses dynamics of the Tlg2-residing early/sorting compartment, indicating that the Tlg2p- and Sec7p-residing regions are discrete entities in the mutant. Thus, the Tlg2p-residing region seems to serve as an early/sorting compartment and function independently of the Sec7p-residing region within the TGN.","lang":"eng"}]},{"month":"07","publication_identifier":{"eissn":["1572-9613"],"issn":["0022-4715"]},"doi":"10.1007/s10955-023-03132-4","language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"arxiv":["2304.04213"],"isi":["001035677200002"]},"quality_controlled":"1","isi":1,"project":[{"_id":"62796744-2b32-11ec-9570-940b20777f1d","grant_number":"101020331","name":"Random matrices beyond Wigner-Dyson-Mehta","call_identifier":"H2020"}],"file_date_updated":"2023-07-31T07:49:31Z","ec_funded":1,"article_number":"128","author":[{"full_name":"Sugimoto, Shoki","first_name":"Shoki","last_name":"Sugimoto"},{"full_name":"Henheik, Sven Joscha","orcid":"0000-0003-1106-327X","id":"31d731d7-d235-11ea-ad11-b50331c8d7fb","last_name":"Henheik","first_name":"Sven Joscha"},{"id":"1949f904-edfb-11eb-afb5-e2dfddabb93b","last_name":"Riabov","first_name":"Volodymyr","full_name":"Riabov, Volodymyr"},{"full_name":"Erdös, László","last_name":"Erdös","first_name":"László","orcid":"0000-0001-5366-9603","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87"}],"date_created":"2023-07-30T22:01:02Z","date_updated":"2023-12-13T11:38:44Z","volume":190,"acknowledgement":"LE, JH, and VR were supported by ERC Advanced Grant “RMTBeyond” No. 101020331. SS was supported by KAKENHI Grant Number JP22J14935 from the Japan Society for the Promotion of Science (JSPS) and Forefront Physics and Mathematics Program to Drive Transformation (FoPM), a World-leading Innovative Graduate Study (WINGS) Program, the University of Tokyo.\r\nOpen access funding provided by The University of Tokyo.","year":"2023","publication_status":"published","publisher":"Springer Nature","department":[{"_id":"LaEr"}],"day":"21","article_processing_charge":"Yes (in subscription journal)","has_accepted_license":"1","scopus_import":"1","date_published":"2023-07-21T00:00:00Z","publication":"Journal of Statistical Physics","citation":{"short":"S. Sugimoto, S.J. Henheik, V. Riabov, L. Erdös, Journal of Statistical Physics 190 (2023).","mla":"Sugimoto, Shoki, et al. “Eigenstate Thermalisation Hypothesis for Translation Invariant Spin Systems.” Journal of Statistical Physics, vol. 190, no. 7, 128, Springer Nature, 2023, doi:10.1007/s10955-023-03132-4.","chicago":"Sugimoto, Shoki, Sven Joscha Henheik, Volodymyr Riabov, and László Erdös. “Eigenstate Thermalisation Hypothesis for Translation Invariant Spin Systems.” Journal of Statistical Physics. Springer Nature, 2023. https://doi.org/10.1007/s10955-023-03132-4.","ama":"Sugimoto S, Henheik SJ, Riabov V, Erdös L. Eigenstate thermalisation hypothesis for translation invariant spin systems. Journal of Statistical Physics. 2023;190(7). doi:10.1007/s10955-023-03132-4","apa":"Sugimoto, S., Henheik, S. J., Riabov, V., & Erdös, L. (2023). Eigenstate thermalisation hypothesis for translation invariant spin systems. Journal of Statistical Physics. Springer Nature. https://doi.org/10.1007/s10955-023-03132-4","ieee":"S. Sugimoto, S. J. Henheik, V. Riabov, and L. Erdös, “Eigenstate thermalisation hypothesis for translation invariant spin systems,” Journal of Statistical Physics, vol. 190, no. 7. Springer Nature, 2023.","ista":"Sugimoto S, Henheik SJ, Riabov V, Erdös L. 2023. Eigenstate thermalisation hypothesis for translation invariant spin systems. Journal of Statistical Physics. 190(7), 128."},"article_type":"original","abstract":[{"text":"We prove the Eigenstate Thermalisation Hypothesis (ETH) for local observables in a typical translation invariant system of quantum spins with L-body interactions, where L is the number of spins. This mathematically verifies the observation first made by Santos and Rigol (Phys Rev E 82(3):031130, 2010, https://doi.org/10.1103/PhysRevE.82.031130) that the ETH may hold for systems with additional translational symmetries for a naturally restricted class of observables. We also present numerical support for the same phenomenon for Hamiltonians with local interaction.","lang":"eng"}],"issue":"7","type":"journal_article","file":[{"file_name":"2023_JourStatPhysics_Sugimoto.pdf","access_level":"open_access","creator":"dernst","file_size":612755,"content_type":"application/pdf","file_id":"13325","relation":"main_file","date_updated":"2023-07-31T07:49:31Z","date_created":"2023-07-31T07:49:31Z","success":1,"checksum":"c2ef6b2aecfee1ad6d03fab620507c2c"}],"oa_version":"Published Version","_id":"13317","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["510","530"],"title":"Eigenstate thermalisation hypothesis for translation invariant spin systems","status":"public","intvolume":" 190"},{"_id":"13278","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 14","ddc":["530"],"title":"Magnetic impurity in a one-dimensional few-fermion system","status":"public","oa_version":"Published Version","file":[{"file_size":1163444,"content_type":"application/pdf","creator":"dernst","access_level":"open_access","file_name":"2023_SciPostPhysics_Rammelmueller.pdf","checksum":"ffdb70b9ae7aa45ea4ea6096ecbd6431","success":1,"date_updated":"2023-07-31T08:44:38Z","date_created":"2023-07-31T08:44:38Z","relation":"main_file","file_id":"13328"}],"type":"journal_article","issue":"1","abstract":[{"lang":"eng","text":"We present a numerical analysis of spin-1/2 fermions in a one-dimensional harmonic potential in the presence of a magnetic point-like impurity at the center of the trap. The model represents a few-body analogue of a magnetic impurity in the vicinity of an s-wave superconductor. Already for a few particles we find a ground-state level crossing between sectors with different fermion parities. We interpret this crossing as a few-body precursor of a quantum phase transition, which occurs when the impurity \"breaks\" a Cooper pair. This picture is further corroborated by analyzing density-density correlations in momentum space. Finally, we discuss how the system may be realized with existing cold-atoms platforms."}],"citation":{"apa":"Rammelmüller, L., Huber, D., Čufar, M., Brand, J., Hammer, H.-W., & Volosniev, A. (2023). Magnetic impurity in a one-dimensional few-fermion system. SciPost Physics. SciPost Foundation. https://doi.org/10.21468/scipostphys.14.1.006","ieee":"L. Rammelmüller, D. Huber, M. Čufar, J. Brand, H.-W. Hammer, and A. Volosniev, “Magnetic impurity in a one-dimensional few-fermion system,” SciPost Physics, vol. 14, no. 1. SciPost Foundation, 2023.","ista":"Rammelmüller L, Huber D, Čufar M, Brand J, Hammer H-W, Volosniev A. 2023. Magnetic impurity in a one-dimensional few-fermion system. SciPost Physics. 14(1), 006.","ama":"Rammelmüller L, Huber D, Čufar M, Brand J, Hammer H-W, Volosniev A. Magnetic impurity in a one-dimensional few-fermion system. SciPost Physics. 2023;14(1). doi:10.21468/scipostphys.14.1.006","chicago":"Rammelmüller, Lukas, David Huber, Matija Čufar, Joachim Brand, Hans-Werner Hammer, and Artem Volosniev. “Magnetic Impurity in a One-Dimensional Few-Fermion System.” SciPost Physics. SciPost Foundation, 2023. https://doi.org/10.21468/scipostphys.14.1.006.","short":"L. Rammelmüller, D. Huber, M. Čufar, J. Brand, H.-W. Hammer, A. Volosniev, SciPost Physics 14 (2023).","mla":"Rammelmüller, Lukas, et al. “Magnetic Impurity in a One-Dimensional Few-Fermion System.” SciPost Physics, vol. 14, no. 1, 006, SciPost Foundation, 2023, doi:10.21468/scipostphys.14.1.006."},"publication":"SciPost Physics","article_type":"original","date_published":"2023-01-24T00:00:00Z","scopus_import":"1","keyword":["General Physics and Astronomy"],"has_accepted_license":"1","article_processing_charge":"No","day":"24","year":"2023","publisher":"SciPost Foundation","department":[{"_id":"MiLe"}],"publication_status":"published","author":[{"last_name":"Rammelmüller","first_name":"Lukas","full_name":"Rammelmüller, Lukas"},{"first_name":"David","last_name":"Huber","full_name":"Huber, David"},{"full_name":"Čufar, Matija","last_name":"Čufar","first_name":"Matija"},{"first_name":"Joachim","last_name":"Brand","full_name":"Brand, Joachim"},{"full_name":"Hammer, Hans-Werner","last_name":"Hammer","first_name":"Hans-Werner"},{"last_name":"Volosniev","first_name":"Artem","orcid":"0000-0003-0393-5525","id":"37D278BC-F248-11E8-B48F-1D18A9856A87","full_name":"Volosniev, Artem"}],"volume":14,"date_created":"2023-07-24T10:48:23Z","date_updated":"2023-12-13T11:39:32Z","article_number":"006","file_date_updated":"2023-07-31T08:44:38Z","external_id":{"arxiv":["2204.01606"],"isi":["001000325800008"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"quality_controlled":"1","isi":1,"doi":"10.21468/scipostphys.14.1.006","language":[{"iso":"eng"}],"publication_identifier":{"issn":["2542-4653"]},"month":"01"},{"article_processing_charge":"No","day":"21","keyword":["General Physics and Astronomy"],"date_published":"2023-07-21T00:00:00Z","citation":{"ista":"Paranjape CS, Yalniz G, Duguet Y, Budanur NB, Hof B. 2023. Direct path from turbulence to time-periodic solutions. Physical Review Letters. 131(3), 034002.","apa":"Paranjape, C. S., Yalniz, G., Duguet, Y., Budanur, N. B., & Hof, B. (2023). Direct path from turbulence to time-periodic solutions. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.131.034002","ieee":"C. S. Paranjape, G. Yalniz, Y. Duguet, N. B. Budanur, and B. Hof, “Direct path from turbulence to time-periodic solutions,” Physical Review Letters, vol. 131, no. 3. American Physical Society, 2023.","ama":"Paranjape CS, Yalniz G, Duguet Y, Budanur NB, Hof B. Direct path from turbulence to time-periodic solutions. Physical Review Letters. 2023;131(3). doi:10.1103/physrevlett.131.034002","chicago":"Paranjape, Chaitanya S, Gökhan Yalniz, Yohann Duguet, Nazmi B Budanur, and Björn Hof. “Direct Path from Turbulence to Time-Periodic Solutions.” Physical Review Letters. American Physical Society, 2023. https://doi.org/10.1103/physrevlett.131.034002.","mla":"Paranjape, Chaitanya S., et al. “Direct Path from Turbulence to Time-Periodic Solutions.” Physical Review Letters, vol. 131, no. 3, 034002, American Physical Society, 2023, doi:10.1103/physrevlett.131.034002.","short":"C.S. Paranjape, G. Yalniz, Y. Duguet, N.B. Budanur, B. Hof, Physical Review Letters 131 (2023)."},"publication":"Physical Review Letters","article_type":"original","issue":"3","abstract":[{"text":"Viscous flows through pipes and channels are steady and ordered until, with increasing velocity, the laminar motion catastrophically breaks down and gives way to turbulence. How this apparently discontinuous change from low- to high-dimensional motion can be rationalized within the framework of the Navier-Stokes equations is not well understood. Exploiting geometrical properties of transitional channel flow we trace turbulence to far lower Reynolds numbers (Re) than previously possible and identify the complete path that reversibly links fully turbulent motion to an invariant solution. This precursor of turbulence destabilizes rapidly with Re, and the accompanying explosive increase in attractor dimension effectively marks the transition between deterministic and de facto stochastic dynamics.","lang":"eng"}],"type":"journal_article","oa_version":"Preprint","_id":"13274","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 131","title":"Direct path from turbulence to time-periodic solutions","status":"public","publication_identifier":{"issn":["0031-9007"],"eissn":["1079-7114"]},"month":"07","doi":"10.1103/physrevlett.131.034002","language":[{"iso":"eng"}],"oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2306.05098"}],"external_id":{"isi":["001052929900004"],"arxiv":["2306.05098"]},"project":[{"name":"Revisiting the Turbulence Problem Using Statistical Mechanics: Experimental Studies on Transitional and Turbulent Flows","_id":"238598C6-32DE-11EA-91FC-C7463DDC885E","grant_number":"662960"}],"quality_controlled":"1","isi":1,"article_number":"034002","author":[{"id":"3D85B7C4-F248-11E8-B48F-1D18A9856A87","last_name":"Paranjape","first_name":"Chaitanya S","full_name":"Paranjape, Chaitanya S"},{"orcid":"0000-0002-8490-9312","id":"66E74FA2-D8BF-11E9-8249-8DE2E5697425","last_name":"Yalniz","first_name":"Gökhan","full_name":"Yalniz, Gökhan"},{"full_name":"Duguet, Yohann","first_name":"Yohann","last_name":"Duguet"},{"id":"3EA1010E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-0423-5010","first_name":"Nazmi B","last_name":"Budanur","full_name":"Budanur, Nazmi B"},{"full_name":"Hof, Björn","orcid":"0000-0003-2057-2754","id":"3A374330-F248-11E8-B48F-1D18A9856A87","last_name":"Hof","first_name":"Björn"}],"volume":131,"date_updated":"2023-12-13T11:40:19Z","date_created":"2023-07-24T09:43:59Z","year":"2023","acknowledgement":"We thank Baofang Song as well as the developers of Channelflow for sharing their numerical codes, and Mukund Vasudevan and Holger Kantz for fruitful discussions. This work was supported by a grant from the Simons Foundation (662960, B. H.).","publisher":"American Physical Society","department":[{"_id":"GradSch"},{"_id":"BjHo"}],"publication_status":"published"},{"language":[{"iso":"eng"}],"doi":"10.1126/science.adf5568","project":[{"grant_number":"343-2022","_id":"34e2a5b5-11ca-11ed-8bc3-b2265616ef0b","name":"A mechano-chemical theory for stem cell fate decisions in organoid development"}],"isi":1,"quality_controlled":"1","oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1126/science.adf5568"}],"external_id":{"isi":["001106405600028"]},"publication_identifier":{"eissn":["1095-9203"]},"month":"06","volume":380,"date_updated":"2023-12-13T11:41:07Z","date_created":"2023-07-23T22:01:12Z","author":[{"full_name":"Brückner, David","orcid":"0000-0001-7205-2975","id":"e1e86031-6537-11eb-953a-f7ab92be508d","last_name":"Brückner","first_name":"David"},{"full_name":"Chen, Hongtao","last_name":"Chen","first_name":"Hongtao"},{"full_name":"Barinov, Lev","first_name":"Lev","last_name":"Barinov"},{"full_name":"Zoller, Benjamin","last_name":"Zoller","first_name":"Benjamin"},{"full_name":"Gregor, Thomas","first_name":"Thomas","last_name":"Gregor"}],"department":[{"_id":"EdHa"}],"publisher":"American Association for the Advancement of Science","publication_status":"published","acknowledgement":"This work was supported in part by the U.S. National Science Foundation, the Center for the Physics of Biological Function (grant PHY-1734030), and the National Institutes of Health (grants R01GM097275, U01DA047730, and U01DK127429). D.B.B. was supported by the NOMIS Foundation as a fellow and by an EMBO postdoctoral fellowship (ALTF 343-2022). H.C. was supported by a Charles H. Revson Biomedical Science Fellowship.","year":"2023","date_published":"2023-06-29T00:00:00Z","page":"1357-1362","article_type":"original","citation":{"chicago":"Brückner, David, Hongtao Chen, Lev Barinov, Benjamin Zoller, and Thomas Gregor. “Stochastic Motion and Transcriptional Dynamics of Pairs of Distal DNA Loci on a Compacted Chromosome.” Science. American Association for the Advancement of Science, 2023. https://doi.org/10.1126/science.adf5568.","short":"D. Brückner, H. Chen, L. Barinov, B. Zoller, T. Gregor, Science 380 (2023) 1357–1362.","mla":"Brückner, David, et al. “Stochastic Motion and Transcriptional Dynamics of Pairs of Distal DNA Loci on a Compacted Chromosome.” Science, vol. 380, no. 6652, American Association for the Advancement of Science, 2023, pp. 1357–62, doi:10.1126/science.adf5568.","apa":"Brückner, D., Chen, H., Barinov, L., Zoller, B., & Gregor, T. (2023). Stochastic motion and transcriptional dynamics of pairs of distal DNA loci on a compacted chromosome. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.adf5568","ieee":"D. Brückner, H. Chen, L. Barinov, B. Zoller, and T. Gregor, “Stochastic motion and transcriptional dynamics of pairs of distal DNA loci on a compacted chromosome,” Science, vol. 380, no. 6652. American Association for the Advancement of Science, pp. 1357–1362, 2023.","ista":"Brückner D, Chen H, Barinov L, Zoller B, Gregor T. 2023. Stochastic motion and transcriptional dynamics of pairs of distal DNA loci on a compacted chromosome. Science. 380(6652), 1357–1362.","ama":"Brückner D, Chen H, Barinov L, Zoller B, Gregor T. Stochastic motion and transcriptional dynamics of pairs of distal DNA loci on a compacted chromosome. Science. 2023;380(6652):1357-1362. doi:10.1126/science.adf5568"},"publication":"Science","article_processing_charge":"No","day":"29","scopus_import":"1","oa_version":"Preprint","intvolume":" 380","title":"Stochastic motion and transcriptional dynamics of pairs of distal DNA loci on a compacted chromosome","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13261","issue":"6652","abstract":[{"lang":"eng","text":"Chromosomes in the eukaryotic nucleus are highly compacted. However, for many functional processes, including transcription initiation, the pairwise motion of distal chromosomal elements such as enhancers and promoters is essential and necessitates dynamic fluidity. Here, we used a live-imaging assay to simultaneously measure the positions of pairs of enhancers and promoters and their transcriptional output while systematically varying the genomic separation between these two DNA loci. Our analysis reveals the coexistence of a compact globular organization and fast subdiffusive dynamics. These combined features cause an anomalous scaling of polymer relaxation times with genomic separation leading to long-ranged correlations. Thus, encounter times of DNA loci are much less dependent on genomic distance than predicted by existing polymer models, with potential consequences for eukaryotic gene expression."}],"type":"journal_article"},{"citation":{"ama":"Kleshnina M. kleshnina/stochgames_info: The effect of environmental information on evolution of cooperation in stochastic games. 2023. doi:10.5281/ZENODO.8059564","ieee":"M. Kleshnina, “kleshnina/stochgames_info: The effect of environmental information on evolution of cooperation in stochastic games.” Zenodo, 2023.","apa":"Kleshnina, M. (2023). kleshnina/stochgames_info: The effect of environmental information on evolution of cooperation in stochastic games. Zenodo. https://doi.org/10.5281/ZENODO.8059564","ista":"Kleshnina M. 2023. kleshnina/stochgames_info: The effect of environmental information on evolution of cooperation in stochastic games, Zenodo, 10.5281/ZENODO.8059564.","short":"M. Kleshnina, (2023).","mla":"Kleshnina, Maria. Kleshnina/Stochgames_info: The Effect of Environmental Information on Evolution of Cooperation in Stochastic Games. Zenodo, 2023, doi:10.5281/ZENODO.8059564.","chicago":"Kleshnina, Maria. “Kleshnina/Stochgames_info: The Effect of Environmental Information on Evolution of Cooperation in Stochastic Games.” Zenodo, 2023. https://doi.org/10.5281/ZENODO.8059564."},"oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/zenodo.8059564"}],"doi":"10.5281/ZENODO.8059564","date_published":"2023-06-20T00:00:00Z","article_processing_charge":"No","month":"06","day":"20","_id":"13336","year":"2023","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"KrCh"}],"publisher":"Zenodo","ddc":["000"],"title":"kleshnina/stochgames_info: The effect of environmental information on evolution of cooperation in stochastic games","status":"public","related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"13258"}]},"author":[{"id":"4E21749C-F248-11E8-B48F-1D18A9856A87","last_name":"Kleshnina","first_name":"Maria","full_name":"Kleshnina, Maria"}],"oa_version":"Published Version","date_created":"2023-07-31T11:30:46Z","date_updated":"2023-12-13T11:42:37Z","type":"research_data_reference"},{"abstract":[{"lang":"eng","text":"The ages of solar-like stars have been at the center of many studies such as exoplanet characterization or Galactic-archeology. While ages are usually computed from stellar evolution models, relations linking ages to other stellar properties, such as rotation and magnetic activity, have been investigated. With the large catalog of 55,232 rotation periods, Prot, and photometric magnetic activity index, Sph from Kepler data, we have the opportunity to look for such magneto-gyro-chronology relations. Stellar ages are obtained with two stellar evolution codes that include treatment of angular momentum evolution, hence using Prot as input in addition to classical atmospheric parameters. We explore two different ways of predicting stellar ages on three subsamples with spectroscopic observations: solar analogs, late-F and G dwarfs, and K dwarfs. We first perform a Bayesian analysis to derive relations between Sph and ages between 1 and 5 Gyr, and other stellar properties. For late-F and G dwarfs, and K dwarfs, the multivariate regression favors the model with Prot and Sph with median differences of 0.1% and 0.2%, respectively. We also apply Machine Learning techniques with a Random Forest algorithm to predict ages up to 14 Gyr with the same set of input parameters. For late-F, G and K dwarfs together, predicted ages are on average within 5.3% of the model ages and improve to 3.1% when including Prot. These are very promising results for a quick age estimation for solar-like stars with photometric observations, especially with current and future space missions."}],"issue":"2","type":"journal_article","oa_version":"Published Version","file":[{"date_created":"2023-08-02T07:42:26Z","date_updated":"2023-08-02T07:42:26Z","success":1,"checksum":"f12452834d7ed6748dbf5ace18af4723","file_id":"13448","relation":"main_file","creator":"dernst","content_type":"application/pdf","file_size":4192386,"file_name":"2023_AstrophysicalJour_Mathur.pdf","access_level":"open_access"}],"_id":"13443","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Magnetic activity evolution of solar-like stars. I. Sph–age relation derived from Kepler observations","status":"public","ddc":["520"],"intvolume":" 952","day":"01","article_processing_charge":"Yes","has_accepted_license":"1","keyword":["Space and Planetary Science","Astronomy and Astrophysics"],"date_published":"2023-08-01T00:00:00Z","publication":"The Astrophysical Journal","citation":{"short":"S. Mathur, Z.R. Claytor, Â.R.G. Santos, R.A. García, L. Amard, L.A. Bugnet, E. Corsaro, A. Bonanno, S.N. Breton, D. Godoy-Rivera, M.H. Pinsonneault, J. van Saders, The Astrophysical Journal 952 (2023).","mla":"Mathur, Savita, et al. “Magnetic Activity Evolution of Solar-like Stars. I. Sph–Age Relation Derived from Kepler Observations.” The Astrophysical Journal, vol. 952, no. 2, 131, American Astronomical Society, 2023, doi:10.3847/1538-4357/acd118.","chicago":"Mathur, Savita, Zachary R. Claytor, Ângela R. G. Santos, Rafael A. García, Louis Amard, Lisa Annabelle Bugnet, Enrico Corsaro, et al. “Magnetic Activity Evolution of Solar-like Stars. I. Sph–Age Relation Derived from Kepler Observations.” The Astrophysical Journal. American Astronomical Society, 2023. https://doi.org/10.3847/1538-4357/acd118.","ama":"Mathur S, Claytor ZR, Santos ÂRG, et al. Magnetic activity evolution of solar-like stars. I. Sph–age relation derived from Kepler observations. The Astrophysical Journal. 2023;952(2). doi:10.3847/1538-4357/acd118","ieee":"S. Mathur et al., “Magnetic activity evolution of solar-like stars. I. Sph–age relation derived from Kepler observations,” The Astrophysical Journal, vol. 952, no. 2. American Astronomical Society, 2023.","apa":"Mathur, S., Claytor, Z. R., Santos, Â. R. G., García, R. A., Amard, L., Bugnet, L. A., … van Saders, J. (2023). Magnetic activity evolution of solar-like stars. I. Sph–age relation derived from Kepler observations. The Astrophysical Journal. American Astronomical Society. https://doi.org/10.3847/1538-4357/acd118","ista":"Mathur S, Claytor ZR, Santos ÂRG, García RA, Amard L, Bugnet LA, Corsaro E, Bonanno A, Breton SN, Godoy-Rivera D, Pinsonneault MH, van Saders J. 2023. Magnetic activity evolution of solar-like stars. I. Sph–age relation derived from Kepler observations. The Astrophysical Journal. 952(2), 131."},"article_type":"original","file_date_updated":"2023-08-02T07:42:26Z","article_number":"131","author":[{"last_name":"Mathur","first_name":"Savita","full_name":"Mathur, Savita"},{"full_name":"Claytor, Zachary R.","first_name":"Zachary R.","last_name":"Claytor"},{"first_name":"Ângela R. G.","last_name":"Santos","full_name":"Santos, Ângela R. G."},{"last_name":"García","first_name":"Rafael A.","full_name":"García, Rafael A."},{"first_name":"Louis","last_name":"Amard","full_name":"Amard, Louis"},{"full_name":"Bugnet, Lisa Annabelle","first_name":"Lisa Annabelle","last_name":"Bugnet","id":"d9edb345-f866-11ec-9b37-d119b5234501","orcid":"0000-0003-0142-4000"},{"last_name":"Corsaro","first_name":"Enrico","full_name":"Corsaro, Enrico"},{"full_name":"Bonanno, Alfio","first_name":"Alfio","last_name":"Bonanno"},{"last_name":"Breton","first_name":"Sylvain N.","full_name":"Breton, Sylvain N."},{"last_name":"Godoy-Rivera","first_name":"Diego","full_name":"Godoy-Rivera, Diego"},{"full_name":"Pinsonneault, Marc H.","first_name":"Marc H.","last_name":"Pinsonneault"},{"first_name":"Jennifer","last_name":"van Saders","full_name":"van Saders, Jennifer"}],"date_updated":"2023-12-13T12:00:15Z","date_created":"2023-08-01T14:19:16Z","volume":952,"acknowledgement":"This paper includes data collected by the Kepler mission and obtained from the MAST data archive at the Space Telescope Science Institute (STScI). Funding for the Kepler mission is provided by the NASA Science Mission Directorate. STScI is operated by the Association of Universities for Research in Astronomy, Inc., under NASA contract NAS 5–26555. We acknowledge that this research was supported in part by the National Science Foundation under grant No. NSF PHY-1748958. S.M. acknowledges support from the Spanish Ministry of Science and Innovation (MICINN) with the Ramón y Cajal fellowship No. RYC-2015-17697, the grant No. PID2019-107061GB-C66, and through AEI under the Severo Ochoa Centres of Excellence Programme 2020–2023 (CEX2019-000920-S). S.M. and D.G.R. acknowledge support from the Spanish Ministry of Science and Innovation (MICINN) with the grant No. PID2019-107187GB-I00. Z.R.C. acknowledges support from National Aeronautics and Space Administration via the TESS Guest Investigator Program (grant No. 80NSSC18K18584). The work presented here was partially supported by the NASA grant NNX17AF27G. A.R.G.S. acknowledges the support by FCT through national funds and by FEDER through COMPETE2020 by the following grants: UIDB/04434/2020 and UIDP/04434/2020. A.R.G.S. is supported by FCT through the work contract No. 2020.02480.CEECIND/CP1631/CT0001. R.A.G., L.A., and S.N.B. acknowledge the support from PLATO and GOLF CNES grants. S.N.B. acknowledges support from PLATO ASI-INAF agreement No. 2015-019-R.1-2018.","year":"2023","publication_status":"published","department":[{"_id":"LiBu"}],"publisher":"American Astronomical Society","month":"08","publication_identifier":{"eissn":["1538-4357"],"issn":["0004-637X"]},"doi":"10.3847/1538-4357/acd118","language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["001034185700001"]},"oa":1,"quality_controlled":"1","isi":1},{"doi":"10.1126/sciadv.adg6983","language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"isi":["001030983100012"],"pmid":["37418524"]},"isi":1,"quality_controlled":"1","publication_identifier":{"eissn":["2375-2548"]},"month":"07","author":[{"last_name":"Ogura","first_name":"Nao","full_name":"Ogura, Nao"},{"last_name":"Sasagawa","first_name":"Yohei","full_name":"Sasagawa, Yohei"},{"full_name":"Ito, Tasuku","first_name":"Tasuku","last_name":"Ito","id":"d5a17a4a-e534-11eb-93ec-91fa2aa9bd57","orcid":"0000-0002-2482-9089"},{"full_name":"Tameshige, Toshiaki","first_name":"Toshiaki","last_name":"Tameshige"},{"first_name":"Satomi","last_name":"Kawai","full_name":"Kawai, Satomi"},{"last_name":"Sano","first_name":"Masaki","full_name":"Sano, Masaki"},{"last_name":"Doll","first_name":"Yuki","full_name":"Doll, Yuki"},{"last_name":"Iwase","first_name":"Akira","full_name":"Iwase, Akira"},{"last_name":"Kawamura","first_name":"Ayako","full_name":"Kawamura, Ayako"},{"full_name":"Suzuki, Takamasa","first_name":"Takamasa","last_name":"Suzuki"},{"first_name":"Itoshi","last_name":"Nikaido","full_name":"Nikaido, Itoshi"},{"last_name":"Sugimoto","first_name":"Keiko","full_name":"Sugimoto, Keiko"},{"first_name":"Momoko","last_name":"Ikeuchi","full_name":"Ikeuchi, Momoko"}],"volume":9,"date_updated":"2023-12-13T11:59:29Z","date_created":"2023-07-23T22:01:11Z","pmid":1,"acknowledgement":"Wethank Y.Iwayama, K.Ohtawa, K.Fukumoto,andN. Mataga (RIKENRRD) for technical assistance in Quartz-Seq2analyses; M. Mouri(RIKENCSRS)for technical support with plasmid construction and transactivation assay; Y. Ikeda (NAIST) for technical support with tissue culture; and A. Furuta for technical support in bulk RNA-seq analysis. We also thank the Single-cell Omics Laboratory for technical consultation in scRNA-seq analyses, the members of the Laboratory for Bioinformatics Research at the RIKEN Center for Biosystems Dynamics Research, and A. Matsushima and T. Ichikawa for IT infrastructure management. This work was supported by JSPS KAKENHI(17K15146,19H05670,20K06712,20H04894,20H05431,and 22H04713 to M.I. and 20H03284 and 20H05911 to K.S.), by the JST FOREST Program (JPMJFR214H to M.I.), by The Naito Foundation to M.I.; by Takeda Science Foundation to M.I,and by the Shiseido Female Researcher Science Grant to M.I. This work was partially supported by RIKENE pigenome Control Program, Medical Research Center Initiative for High Depth Omics, and JST CREST(JPMJCR16G3and JPMJCR1926)to I.N.","year":"2023","publisher":"American Association for the Advancement of Science","publication_status":"published","file_date_updated":"2023-08-01T06:40:35Z","date_published":"2023-07-07T00:00:00Z","citation":{"ama":"Ogura N, Sasagawa Y, Ito T, et al. WUSCHEL-RELATED HOMEOBOX 13 suppresses de novo shoot regeneration via cell fate control of pluripotent callus. Science Advances. 2023;9(27):eadg6983. doi:10.1126/sciadv.adg6983","ista":"Ogura N, Sasagawa Y, Ito T, Tameshige T, Kawai S, Sano M, Doll Y, Iwase A, Kawamura A, Suzuki T, Nikaido I, Sugimoto K, Ikeuchi M. 2023. WUSCHEL-RELATED HOMEOBOX 13 suppresses de novo shoot regeneration via cell fate control of pluripotent callus. Science Advances. 9(27), eadg6983.","ieee":"N. Ogura et al., “WUSCHEL-RELATED HOMEOBOX 13 suppresses de novo shoot regeneration via cell fate control of pluripotent callus,” Science Advances, vol. 9, no. 27. American Association for the Advancement of Science, p. eadg6983, 2023.","apa":"Ogura, N., Sasagawa, Y., Ito, T., Tameshige, T., Kawai, S., Sano, M., … Ikeuchi, M. (2023). WUSCHEL-RELATED HOMEOBOX 13 suppresses de novo shoot regeneration via cell fate control of pluripotent callus. Science Advances. American Association for the Advancement of Science. https://doi.org/10.1126/sciadv.adg6983","mla":"Ogura, Nao, et al. “WUSCHEL-RELATED HOMEOBOX 13 Suppresses de Novo Shoot Regeneration via Cell Fate Control of Pluripotent Callus.” Science Advances, vol. 9, no. 27, American Association for the Advancement of Science, 2023, p. eadg6983, doi:10.1126/sciadv.adg6983.","short":"N. Ogura, Y. Sasagawa, T. Ito, T. Tameshige, S. Kawai, M. Sano, Y. Doll, A. Iwase, A. Kawamura, T. Suzuki, I. Nikaido, K. Sugimoto, M. Ikeuchi, Science Advances 9 (2023) eadg6983.","chicago":"Ogura, Nao, Yohei Sasagawa, Tasuku Ito, Toshiaki Tameshige, Satomi Kawai, Masaki Sano, Yuki Doll, et al. “WUSCHEL-RELATED HOMEOBOX 13 Suppresses de Novo Shoot Regeneration via Cell Fate Control of Pluripotent Callus.” Science Advances. American Association for the Advancement of Science, 2023. https://doi.org/10.1126/sciadv.adg6983."},"publication":"Science Advances","page":"eadg6983","article_type":"original","has_accepted_license":"1","article_processing_charge":"Yes","day":"07","scopus_import":"1","oa_version":"Published Version","file":[{"file_name":"2023_ScienceAdvance_Ogura.pdf","access_level":"open_access","file_size":1759993,"content_type":"application/pdf","creator":"dernst","relation":"main_file","file_id":"13338","date_updated":"2023-08-01T06:40:35Z","date_created":"2023-08-01T06:40:35Z","checksum":"f59217e1083767777318b5d0cc5e141d","success":1}],"_id":"13259","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 9","status":"public","title":"WUSCHEL-RELATED HOMEOBOX 13 suppresses de novo shoot regeneration via cell fate control of pluripotent callus","ddc":["580"],"issue":"27","abstract":[{"lang":"eng","text":"Plants can regenerate their bodies via de novo establishment of shoot apical meristems (SAMs) from pluripotent callus. Only a small fraction of callus cells is eventually specified into SAMs but the molecular mechanisms underlying fate specification remain obscure. The expression of WUSCHEL (WUS) is an early hallmark of SAM fate acquisition. Here, we show that a WUS paralog, WUSCHEL-RELATED HOMEOBOX 13 (WOX13), negatively regulates SAM formation from callus in Arabidopsis thaliana. WOX13 promotes non-meristematic cell fate via transcriptional repression of WUS and other SAM regulators and activation of cell wall modifiers. Our Quartz-Seq2–based single cell transcriptome revealed that WOX13 plays key roles in determining cellular identity of callus cell population. We propose that reciprocal inhibition between WUS and WOX13 mediates critical cell fate determination in pluripotent cell population, which has a major impact on regeneration efficiency."}],"type":"journal_article"},{"doi":"10.1093/gigascience/giad045","language":[{"iso":"eng"}],"external_id":{"isi":["001081086100001"],"pmid":["37496156"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1093/gigascience/giad045"}],"oa":1,"isi":1,"quality_controlled":"1","publication_identifier":{"eissn":["2047-217X"]},"month":"07","author":[{"full_name":"Wolfsberger, Walter","first_name":"Walter","last_name":"Wolfsberger"},{"first_name":"Karishma","last_name":"Chhugani","full_name":"Chhugani, Karishma"},{"full_name":"Shchubelka, Khrystyna","last_name":"Shchubelka","first_name":"Khrystyna"},{"first_name":"Alina","last_name":"Frolova","full_name":"Frolova, Alina"},{"last_name":"Salyha","first_name":"Yuriy","full_name":"Salyha, Yuriy"},{"full_name":"Zlenko, Oksana","first_name":"Oksana","last_name":"Zlenko"},{"full_name":"Arych, Mykhailo","first_name":"Mykhailo","last_name":"Arych"},{"last_name":"Dziuba","first_name":"Dmytro","full_name":"Dziuba, Dmytro"},{"full_name":"Parkhomenko, Andrii","first_name":"Andrii","last_name":"Parkhomenko"},{"last_name":"Smolanka","first_name":"Volodymyr","full_name":"Smolanka, Volodymyr"},{"full_name":"Gümüş, Zeynep H.","first_name":"Zeynep H.","last_name":"Gümüş"},{"last_name":"Sezgin","first_name":"Efe","full_name":"Sezgin, Efe"},{"last_name":"Diaz-Lameiro","first_name":"Alondra","full_name":"Diaz-Lameiro, Alondra"},{"full_name":"Toth, Viktor R.","last_name":"Toth","first_name":"Viktor R."},{"full_name":"Maci, Megi","first_name":"Megi","last_name":"Maci"},{"first_name":"Eric","last_name":"Bortz","full_name":"Bortz, Eric"},{"full_name":"Kondrashov, Fyodor","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8243-4694","first_name":"Fyodor","last_name":"Kondrashov"},{"full_name":"Morton, Patricia M.","last_name":"Morton","first_name":"Patricia M."},{"first_name":"Paweł P.","last_name":"Łabaj","full_name":"Łabaj, Paweł P."},{"full_name":"Romero, Veronika","first_name":"Veronika","last_name":"Romero"},{"first_name":"Jakub","last_name":"Hlávka","full_name":"Hlávka, Jakub"},{"full_name":"Mangul, Serghei","first_name":"Serghei","last_name":"Mangul"},{"full_name":"Oleksyk, Taras K.","first_name":"Taras K.","last_name":"Oleksyk"}],"volume":12,"date_updated":"2023-12-13T12:01:46Z","date_created":"2023-08-06T22:01:13Z","pmid":1,"year":"2023","acknowledgement":"Our article is dedicated to all freedom-loving people around the world and to the people of Ukraine who fight for our freedom. Special thanks to Anita Bandrowski, Oleksandra V. Ivashchenko, and Sanita Reinsone for the helpful review, valuable criticism, and useful suggestions while preparing this manuscript, and to Tetiana Yes'kova for helping with Ukrainian translation.\r\nAll authors volunteered their time. No funding supported work on this article.","department":[{"_id":"FyKo"}],"publisher":"Oxford Academic","publication_status":"epub_ahead","date_published":"2023-07-27T00:00:00Z","citation":{"ama":"Wolfsberger W, Chhugani K, Shchubelka K, et al. Scientists without borders: Lessons from Ukraine. GigaScience. 2023;12. doi:10.1093/gigascience/giad045","ista":"Wolfsberger W, Chhugani K, Shchubelka K, Frolova A, Salyha Y, Zlenko O, Arych M, Dziuba D, Parkhomenko A, Smolanka V, Gümüş ZH, Sezgin E, Diaz-Lameiro A, Toth VR, Maci M, Bortz E, Kondrashov F, Morton PM, Łabaj PP, Romero V, Hlávka J, Mangul S, Oleksyk TK. 2023. Scientists without borders: Lessons from Ukraine. GigaScience. 12.","apa":"Wolfsberger, W., Chhugani, K., Shchubelka, K., Frolova, A., Salyha, Y., Zlenko, O., … Oleksyk, T. K. (2023). Scientists without borders: Lessons from Ukraine. GigaScience. Oxford Academic. https://doi.org/10.1093/gigascience/giad045","ieee":"W. Wolfsberger et al., “Scientists without borders: Lessons from Ukraine,” GigaScience, vol. 12. Oxford Academic, 2023.","mla":"Wolfsberger, Walter, et al. “Scientists without Borders: Lessons from Ukraine.” GigaScience, vol. 12, Oxford Academic, 2023, doi:10.1093/gigascience/giad045.","short":"W. Wolfsberger, K. Chhugani, K. Shchubelka, A. Frolova, Y. Salyha, O. Zlenko, M. Arych, D. Dziuba, A. Parkhomenko, V. Smolanka, Z.H. Gümüş, E. Sezgin, A. Diaz-Lameiro, V.R. Toth, M. Maci, E. Bortz, F. Kondrashov, P.M. Morton, P.P. Łabaj, V. Romero, J. Hlávka, S. Mangul, T.K. Oleksyk, GigaScience 12 (2023).","chicago":"Wolfsberger, Walter, Karishma Chhugani, Khrystyna Shchubelka, Alina Frolova, Yuriy Salyha, Oksana Zlenko, Mykhailo Arych, et al. “Scientists without Borders: Lessons from Ukraine.” GigaScience. Oxford Academic, 2023. https://doi.org/10.1093/gigascience/giad045."},"publication":"GigaScience","article_type":"original","article_processing_charge":"Yes","day":"27","scopus_import":"1","oa_version":"Published Version","_id":"13976","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 12","title":"Scientists without borders: Lessons from Ukraine","status":"public","abstract":[{"text":"Conflicts and natural disasters affect entire populations of the countries involved and, in addition to the thousands of lives destroyed, have a substantial negative impact on the scientific advances these countries provide. The unprovoked invasion of Ukraine by Russia, the devastating earthquake in Turkey and Syria, and the ongoing conflicts in the Middle East are just a few examples. Millions of people have been killed or displaced, their futures uncertain. These events have resulted in extensive infrastructure collapse, with loss of electricity, transportation, and access to services. Schools, universities, and research centers have been destroyed along with decades’ worth of data, samples, and findings. Scholars in disaster areas face short- and long-term problems in terms of what they can accomplish now for obtaining grants and for employment in the long run. In our interconnected world, conflicts and disasters are no longer a local problem but have wide-ranging impacts on the entire world, both now and in the future. Here, we focus on the current and ongoing impact of war on the scientific community within Ukraine and from this draw lessons that can be applied to all affected countries where scientists at risk are facing hardship. We present and classify examples of effective and feasible mechanisms used to support researchers in countries facing hardship and discuss how these can be implemented with help from the international scientific community and what more is desperately needed. Reaching out, providing accessible training opportunities, and developing collaborations should increase inclusion and connectivity, support scientific advancements within affected communities, and expedite postwar and disaster recovery.","lang":"eng"}],"type":"journal_article"},{"month":"05","publication_identifier":{"issn":["0373-0956"]},"oa":1,"tmp":{"short":"CC BY-ND (4.0)","image":"/image/cc_by_nd.png","name":"Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nd/4.0/legalcode"},"external_id":{"arxiv":["2005.14013"],"isi":["001000279500001"]},"quality_controlled":"1","isi":1,"project":[{"grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships"}],"doi":"10.5802/aif.3529","language":[{"iso":"eng"}],"file_date_updated":"2023-08-07T07:19:42Z","ec_funded":1,"license":"https://creativecommons.org/licenses/by-nd/4.0/","year":"2023","acknowledgement":"This paper was completed as part of a project which received funding from the\r\nEuropean Union’s Horizon 2020 research and innovation programme under the Marie\r\nSkłodowska-Curie grant agreement No. 754411.","publication_status":"published","publisher":"Association des Annales de l'Institut Fourier","department":[{"_id":"TiBr"}],"author":[{"full_name":"Lyczak, Julian","last_name":"Lyczak","first_name":"Julian","id":"3572849A-F248-11E8-B48F-1D18A9856A87"}],"date_updated":"2023-12-13T12:03:04Z","date_created":"2023-08-06T22:01:12Z","volume":73,"scopus_import":"1","day":"12","has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","publication":"Annales de l'Institut Fourier","citation":{"chicago":"Lyczak, Julian. “Order 5 Brauer–Manin Obstructions to the Integral Hasse Principle on Log K3 Surfaces.” Annales de l’Institut Fourier. Association des Annales de l’Institut Fourier, 2023. https://doi.org/10.5802/aif.3529.","mla":"Lyczak, Julian. “Order 5 Brauer–Manin Obstructions to the Integral Hasse Principle on Log K3 Surfaces.” Annales de l’Institut Fourier, vol. 73, no. 2, Association des Annales de l’Institut Fourier, 2023, pp. 447–78, doi:10.5802/aif.3529.","short":"J. Lyczak, Annales de l’Institut Fourier 73 (2023) 447–478.","ista":"Lyczak J. 2023. Order 5 Brauer–Manin obstructions to the integral Hasse principle on log K3 surfaces. Annales de l’Institut Fourier. 73(2), 447–478.","apa":"Lyczak, J. (2023). Order 5 Brauer–Manin obstructions to the integral Hasse principle on log K3 surfaces. Annales de l’Institut Fourier. Association des Annales de l’Institut Fourier. https://doi.org/10.5802/aif.3529","ieee":"J. Lyczak, “Order 5 Brauer–Manin obstructions to the integral Hasse principle on log K3 surfaces,” Annales de l’Institut Fourier, vol. 73, no. 2. Association des Annales de l’Institut Fourier, pp. 447–478, 2023.","ama":"Lyczak J. Order 5 Brauer–Manin obstructions to the integral Hasse principle on log K3 surfaces. Annales de l’Institut Fourier. 2023;73(2):447-478. doi:10.5802/aif.3529"},"article_type":"original","page":"447-478","date_published":"2023-05-12T00:00:00Z","type":"journal_article","abstract":[{"lang":"eng","text":"We construct families of log K3 surfaces and study the arithmetic of their members. We use this to produce explicit surfaces with an order 5 Brauer–Manin obstruction to the integral Hasse principle."}],"issue":"2","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13973","ddc":["510"],"status":"public","title":"Order 5 Brauer–Manin obstructions to the integral Hasse principle on log K3 surfaces","intvolume":" 73","oa_version":"Published Version","file":[{"file_size":1529821,"content_type":"application/pdf","creator":"dernst","access_level":"open_access","file_name":"2023_AnnalesFourier_Lyczak.pdf","checksum":"daf53fc614c894422e4c0fb3d2a2ae3e","success":1,"date_updated":"2023-08-07T07:19:42Z","date_created":"2023-08-07T07:19:42Z","relation":"main_file","file_id":"13977"}]},{"department":[{"_id":"UlWa"}],"publisher":"Springer Nature","publication_status":"epub_ahead","acknowledgement":"Part of the research leading to this paper was done during the 16th Gremo Workshop on Open Problems (GWOP), Waltensburg, Switzerland, June 12–16, 2018. We thank Patrick Schnider for suggesting the problem, and Stefan Felsner, Malte Milatz, and Emo Welzl for fruitful discussions during the workshop. We also thank Stefan Felsner and Manfred Scheucher for finding, communicating the example from Sect. 3.3, and the kind permission to include their visualization of the point set. We thank Dömötör Pálvölgyi, the SoCG reviewers, and DCG reviewers for various helpful comments.\r\nR. Fulek gratefully acknowledges support from Austrian Science Fund (FWF), Project M2281-N35. A. Kupavskii was supported by the Advanced Postdoc.Mobility Grant no. P300P2_177839 of the Swiss National Science Foundation. Research by P. Valtr was supported by the Grant no. 18-19158 S of the Czech Science Foundation (GAČR).","year":"2023","date_updated":"2023-12-13T12:03:35Z","date_created":"2023-08-06T22:01:12Z","related_material":{"record":[{"status":"public","relation":"earlier_version","id":"6647"}]},"author":[{"full_name":"Fulek, Radoslav","last_name":"Fulek","first_name":"Radoslav","orcid":"0000-0001-8485-1774","id":"39F3FFE4-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Gärtner, Bernd","last_name":"Gärtner","first_name":"Bernd"},{"last_name":"Kupavskii","first_name":"Andrey","full_name":"Kupavskii, Andrey"},{"last_name":"Valtr","first_name":"Pavel","full_name":"Valtr, Pavel"},{"first_name":"Uli","last_name":"Wagner","id":"36690CA2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1494-0568","full_name":"Wagner, Uli"}],"project":[{"name":"Eliminating intersections in drawings of graphs","call_identifier":"FWF","_id":"261FA626-B435-11E9-9278-68D0E5697425","grant_number":"M02281"}],"isi":1,"quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.1812.04911"}],"oa":1,"external_id":{"isi":["001038546500001"],"arxiv":["1812.04911"]},"language":[{"iso":"eng"}],"doi":"10.1007/s00454-023-00532-x","publication_identifier":{"issn":["0179-5376"],"eissn":["1432-0444"]},"month":"07","status":"public","title":"The crossing Tverberg theorem","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13974","oa_version":"Preprint","type":"journal_article","abstract":[{"text":"The Tverberg theorem is one of the cornerstones of discrete geometry. It states that, given a set X of at least (d+1)(r−1)+1 points in Rd, one can find a partition X=X1∪⋯∪Xr of X, such that the convex hulls of the Xi, i=1,…,r, all share a common point. In this paper, we prove a trengthening of this theorem that guarantees a partition which, in addition to the above, has the property that the boundaries of full-dimensional convex hulls have pairwise nonempty intersections. Possible generalizations and algorithmic aspects are also discussed. As a concrete application, we show that any n points in the plane in general position span ⌊n/3⌋ vertex-disjoint triangles that are pairwise crossing, meaning that their boundaries have pairwise nonempty intersections; this number is clearly best possible. A previous result of Álvarez-Rebollar et al. guarantees ⌊n/6⌋pairwise crossing triangles. Our result generalizes to a result about simplices in Rd, d≥2.","lang":"eng"}],"article_type":"original","citation":{"short":"R. Fulek, B. Gärtner, A. Kupavskii, P. Valtr, U. Wagner, Discrete and Computational Geometry (2023).","mla":"Fulek, Radoslav, et al. “The Crossing Tverberg Theorem.” Discrete and Computational Geometry, Springer Nature, 2023, doi:10.1007/s00454-023-00532-x.","chicago":"Fulek, Radoslav, Bernd Gärtner, Andrey Kupavskii, Pavel Valtr, and Uli Wagner. “The Crossing Tverberg Theorem.” Discrete and Computational Geometry. Springer Nature, 2023. https://doi.org/10.1007/s00454-023-00532-x.","ama":"Fulek R, Gärtner B, Kupavskii A, Valtr P, Wagner U. The crossing Tverberg theorem. Discrete and Computational Geometry. 2023. doi:10.1007/s00454-023-00532-x","apa":"Fulek, R., Gärtner, B., Kupavskii, A., Valtr, P., & Wagner, U. (2023). The crossing Tverberg theorem. Discrete and Computational Geometry. Springer Nature. https://doi.org/10.1007/s00454-023-00532-x","ieee":"R. Fulek, B. Gärtner, A. Kupavskii, P. Valtr, and U. Wagner, “The crossing Tverberg theorem,” Discrete and Computational Geometry. Springer Nature, 2023.","ista":"Fulek R, Gärtner B, Kupavskii A, Valtr P, Wagner U. 2023. The crossing Tverberg theorem. Discrete and Computational Geometry."},"publication":"Discrete and Computational Geometry","date_published":"2023-07-27T00:00:00Z","scopus_import":"1","article_processing_charge":"No","day":"27"},{"publication_status":"epub_ahead","publisher":"Springer Nature","department":[{"_id":"LaEr"}],"year":"2023","acknowledgement":"The first author thanks Yizhe Zhu for pointing out reference [30]. We thank David Renfrew for comments on an earlier draft. We thank the anonymous referee for a careful reading and helpful comments.\r\nOpen access funding provided by Institute of Science and Technology (IST Austria).","date_updated":"2023-12-13T12:00:50Z","date_created":"2023-08-06T22:01:13Z","author":[{"last_name":"Campbell","first_name":"Andrew J","id":"582b06a9-1f1c-11ee-b076-82ffce00dde4","full_name":"Campbell, Andrew J"},{"full_name":"O’Rourke, Sean","first_name":"Sean","last_name":"O’Rourke"}],"month":"07","publication_identifier":{"issn":["0894-9840"],"eissn":["1572-9230"]},"isi":1,"quality_controlled":"1","oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"main_file_link":[{"url":"https://doi.org/10.1007/s10959-023-01275-4","open_access":"1"}],"external_id":{"isi":["001038341000001"],"arxiv":["2210.07927"]},"language":[{"iso":"eng"}],"doi":"10.1007/s10959-023-01275-4","type":"journal_article","abstract":[{"lang":"eng","text":"We consider the spectrum of random Laplacian matrices of the form Ln=An−Dn where An\r\n is a real symmetric random matrix and Dn is a diagonal matrix whose entries are equal to the corresponding row sums of An. If An is a Wigner matrix with entries in the domain of attraction of a Gaussian distribution, the empirical spectral measure of Ln is known to converge to the free convolution of a semicircle distribution and a standard real Gaussian distribution. We consider real symmetric random matrices An with independent entries (up to symmetry) whose row sums converge to a purely non-Gaussian infinitely divisible distribution, which fall into the class of Lévy–Khintchine random matrices first introduced by Jung [Trans Am Math Soc, 370, (2018)]. Our main result shows that the empirical spectral measure of Ln converges almost surely to a deterministic limit. A key step in the proof is to use the purely non-Gaussian nature of the row sums to build a random operator to which Ln converges in an appropriate sense. This operator leads to a recursive distributional equation uniquely describing the Stieltjes transform of the limiting empirical spectral measure."}],"status":"public","ddc":["510"],"title":"Spectrum of Lévy–Khintchine random laplacian matrices","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13975","oa_version":"Published Version","scopus_import":"1","day":"26","article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","article_type":"original","publication":"Journal of Theoretical Probability","citation":{"mla":"Campbell, Andrew J., and Sean O’Rourke. “Spectrum of Lévy–Khintchine Random Laplacian Matrices.” Journal of Theoretical Probability, Springer Nature, 2023, doi:10.1007/s10959-023-01275-4.","short":"A.J. Campbell, S. O’Rourke, Journal of Theoretical Probability (2023).","chicago":"Campbell, Andrew J, and Sean O’Rourke. “Spectrum of Lévy–Khintchine Random Laplacian Matrices.” Journal of Theoretical Probability. Springer Nature, 2023. https://doi.org/10.1007/s10959-023-01275-4.","ama":"Campbell AJ, O’Rourke S. Spectrum of Lévy–Khintchine random laplacian matrices. Journal of Theoretical Probability. 2023. doi:10.1007/s10959-023-01275-4","ista":"Campbell AJ, O’Rourke S. 2023. Spectrum of Lévy–Khintchine random laplacian matrices. Journal of Theoretical Probability.","ieee":"A. J. Campbell and S. O’Rourke, “Spectrum of Lévy–Khintchine random laplacian matrices,” Journal of Theoretical Probability. Springer Nature, 2023.","apa":"Campbell, A. J., & O’Rourke, S. (2023). Spectrum of Lévy–Khintchine random laplacian matrices. Journal of Theoretical Probability. Springer Nature. https://doi.org/10.1007/s10959-023-01275-4"},"date_published":"2023-07-26T00:00:00Z"},{"type":"journal_article","abstract":[{"text":"The magnetotropic susceptibility is the thermodynamic coefficient associated with the rotational anisotropy of the free energy in an external magnetic field and is closely related to the magnetic susceptibility. It emerges naturally in frequency-shift measurements of oscillating mechanical cantilevers, which are becoming an increasingly important tool in the quantitative study of the thermodynamics of modern condensed-matter systems. Here we discuss the basic properties of the magnetotropic susceptibility as they relate to the experimental aspects of frequency-shift measurements, as well as to the interpretation of those experiments in terms of the intrinsic properties of the system under study.","lang":"eng"}],"issue":"3","_id":"13257","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","title":"Magnetotropic susceptibility","intvolume":" 108","oa_version":"Preprint","scopus_import":"1","day":"15","article_processing_charge":"No","publication":"Physical Review B","citation":{"ama":"Shekhter A, Mcdonald RD, Ramshaw BJ, Modic KA. Magnetotropic susceptibility. Physical Review B. 2023;108(3). doi:10.1103/PhysRevB.108.035111","apa":"Shekhter, A., Mcdonald, R. D., Ramshaw, B. J., & Modic, K. A. (2023). Magnetotropic susceptibility. Physical Review B. American Physical Society. https://doi.org/10.1103/PhysRevB.108.035111","ieee":"A. Shekhter, R. D. Mcdonald, B. J. Ramshaw, and K. A. Modic, “Magnetotropic susceptibility,” Physical Review B, vol. 108, no. 3. American Physical Society, 2023.","ista":"Shekhter A, Mcdonald RD, Ramshaw BJ, Modic KA. 2023. Magnetotropic susceptibility. Physical Review B. 108(3), 035111.","short":"A. Shekhter, R.D. Mcdonald, B.J. Ramshaw, K.A. Modic, Physical Review B 108 (2023).","mla":"Shekhter, A., et al. “Magnetotropic Susceptibility.” Physical Review B, vol. 108, no. 3, 035111, American Physical Society, 2023, doi:10.1103/PhysRevB.108.035111.","chicago":"Shekhter, A., R. D. Mcdonald, B. J. Ramshaw, and Kimberly A Modic. “Magnetotropic Susceptibility.” Physical Review B. American Physical Society, 2023. https://doi.org/10.1103/PhysRevB.108.035111."},"article_type":"original","date_published":"2023-07-15T00:00:00Z","article_number":"035111","year":"2023","acknowledgement":"We thank Aharon Kapitulnik, Philip Moll, and Andreas Rydh for illuminating discussions. The work at the Los Alamos National Laboratory is supported by National Science Foundation Cooperative Agreements No. DMR-1157490 and No. DMR-1644779, the state of Florida, and the U.S. Department of Energy. A.S. acknowledges support from the DOE/BES Science of 100T grant. B.J.R. acknowledges funding from the National Science Foundation under Grant No.\r\nDMR-1752784.","publication_status":"published","publisher":"American Physical Society","department":[{"_id":"KiMo"}],"author":[{"full_name":"Shekhter, A.","last_name":"Shekhter","first_name":"A."},{"first_name":"R. D.","last_name":"Mcdonald","full_name":"Mcdonald, R. D."},{"last_name":"Ramshaw","first_name":"B. J.","full_name":"Ramshaw, B. J."},{"full_name":"Modic, Kimberly A","orcid":"0000-0001-9760-3147","id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425","last_name":"Modic","first_name":"Kimberly A"}],"date_created":"2023-07-23T22:01:10Z","date_updated":"2023-12-13T11:58:57Z","volume":108,"month":"07","publication_identifier":{"eissn":["2469-9969"],"issn":["2469-9950"]},"main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2208.10038","open_access":"1"}],"external_id":{"isi":["001062708600002"],"arxiv":["2208.10038"]},"oa":1,"quality_controlled":"1","isi":1,"doi":"10.1103/PhysRevB.108.035111","language":[{"iso":"eng"}]},{"scopus_import":"1","day":"27","article_processing_charge":"No","publication":"ChemCatChem","citation":{"chicago":"Næsborg, Line, Bartholomäus Pieber, and Oliver S. Wenger. “Special Collection: Photocatalytic Synthesis.” ChemCatChem. Wiley, 2023. https://doi.org/10.1002/cctc.202300683.","mla":"Næsborg, Line, et al. “Special Collection: Photocatalytic Synthesis.” ChemCatChem, e202300683, Wiley, 2023, doi:10.1002/cctc.202300683.","short":"L. Næsborg, B. Pieber, O.S. Wenger, ChemCatChem (2023).","ista":"Næsborg L, Pieber B, Wenger OS. 2023. Special Collection: Photocatalytic synthesis. ChemCatChem., e202300683.","apa":"Næsborg, L., Pieber, B., & Wenger, O. S. (2023). Special Collection: Photocatalytic synthesis. ChemCatChem. Wiley. https://doi.org/10.1002/cctc.202300683","ieee":"L. Næsborg, B. Pieber, and O. S. Wenger, “Special Collection: Photocatalytic synthesis,” ChemCatChem. Wiley, 2023.","ama":"Næsborg L, Pieber B, Wenger OS. Special Collection: Photocatalytic synthesis. ChemCatChem. 2023. doi:10.1002/cctc.202300683"},"article_type":"letter_note","date_published":"2023-07-27T00:00:00Z","type":"journal_article","abstract":[{"lang":"eng","text":"This Special Collection is dedicated to the field of photocatalytic synthesis and contains a diverse selection of original research contributions. It includes studies on catalyst development, mechanistic investigations, method development and the use of enabling technologies, illustrating the many facets of state-of-the-art research in photocatalytic synthesis. Further, emerging topics are surveyed and discussed in three reviews and a concept article."}],"_id":"13972","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Special Collection: Photocatalytic synthesis","status":"public","oa_version":"Published Version","month":"07","publication_identifier":{"eissn":["1867-3899"],"issn":["1867-3880"]},"main_file_link":[{"url":"https://doi.org/10.1002/cctc.202300683","open_access":"1"}],"external_id":{"isi":["001037859900001"]},"oa":1,"quality_controlled":"1","isi":1,"doi":"10.1002/cctc.202300683","language":[{"iso":"eng"}],"article_number":"e202300683","year":"2023","publication_status":"epub_ahead","department":[{"_id":"BaPi"}],"publisher":"Wiley","author":[{"first_name":"Line","last_name":"Næsborg","full_name":"Næsborg, Line"},{"orcid":"0000-0001-8689-388X","id":"93e5e5b2-0da6-11ed-8a41-af589a024726","last_name":"Pieber","first_name":"Bartholomäus","full_name":"Pieber, Bartholomäus"},{"full_name":"Wenger, Oliver S.","first_name":"Oliver S.","last_name":"Wenger"}],"date_created":"2023-08-06T22:01:12Z","date_updated":"2023-12-13T12:02:26Z"},{"date_published":"2023-07-14T00:00:00Z","citation":{"ama":"Hasler R, Steger-Polt MH, Reiner-Rozman C, et al. Optical and electronic signal stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing. Frontiers in Physics. 2023;11. doi:10.3389/fphy.2023.1202132","apa":"Hasler, R., Steger-Polt, M. H., Reiner-Rozman, C., Fossati, S., Lee, S., Aspermair, P., … Knoll, W. (2023). Optical and electronic signal stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing. Frontiers in Physics. Frontiers. https://doi.org/10.3389/fphy.2023.1202132","ieee":"R. Hasler et al., “Optical and electronic signal stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing,” Frontiers in Physics, vol. 11. Frontiers, 2023.","ista":"Hasler R, Steger-Polt MH, Reiner-Rozman C, Fossati S, Lee S, Aspermair P, Kleber C, Ibáñez M, Dostalek J, Knoll W. 2023. Optical and electronic signal stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing. Frontiers in Physics. 11, 1202132.","short":"R. Hasler, M.H. Steger-Polt, C. Reiner-Rozman, S. Fossati, S. Lee, P. Aspermair, C. Kleber, M. Ibáñez, J. Dostalek, W. Knoll, Frontiers in Physics 11 (2023).","mla":"Hasler, Roger, et al. “Optical and Electronic Signal Stabilization of Plasmonic Fiber Optic Gate Electrodes: Towards Improved Real-Time Dual-Mode Biosensing.” Frontiers in Physics, vol. 11, 1202132, Frontiers, 2023, doi:10.3389/fphy.2023.1202132.","chicago":"Hasler, Roger, Marie Helene Steger-Polt, Ciril Reiner-Rozman, Stefan Fossati, Seungho Lee, Patrik Aspermair, Christoph Kleber, Maria Ibáñez, Jakub Dostalek, and Wolfgang Knoll. “Optical and Electronic Signal Stabilization of Plasmonic Fiber Optic Gate Electrodes: Towards Improved Real-Time Dual-Mode Biosensing.” Frontiers in Physics. Frontiers, 2023. https://doi.org/10.3389/fphy.2023.1202132."},"publication":"Frontiers in Physics","article_type":"original","has_accepted_license":"1","article_processing_charge":"Yes","day":"14","scopus_import":"1","file":[{"content_type":"application/pdf","file_size":2421758,"creator":"dernst","access_level":"open_access","file_name":"2023_FrontiersPhysics_Hasler.pdf","checksum":"fb36dda665e57bab006a000bf0faacd5","success":1,"date_updated":"2023-08-07T07:48:11Z","date_created":"2023-08-07T07:48:11Z","relation":"main_file","file_id":"13978"}],"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13968","intvolume":" 11","title":"Optical and electronic signal stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing","ddc":["530"],"status":"public","abstract":[{"lang":"eng","text":"The use of multimodal readout mechanisms next to label-free real-time monitoring of biomolecular interactions can provide valuable insight into surface-based reaction mechanisms. To this end, the combination of an electrolyte-gated field-effect transistor (EG-FET) with a fiber optic-coupled surface plasmon resonance (FO-SPR) probe serving as gate electrode has been investigated to deconvolute surface mass and charge density variations associated to surface reactions. However, applying an electrochemical potential on such gold-coated FO-SPR gate electrodes can induce gradual morphological changes of the thin gold film, leading to an irreversible blue-shift of the SPR wavelength and a substantial signal drift. We show that mild annealing leads to optical and electronic signal stabilization (20-fold lower signal drift than as-sputtered fiber optic gates) and improved overall analytical performance characteristics. The thermal treatment prevents morphological changes of the thin gold-film occurring during operation, hence providing reliable and stable data immediately upon gate voltage application. Thus, the readout output of both transducing principles, the optical FO-SPR and electronic EG-FET, stays constant throughout the whole sensing time-window and the long-term effect of thermal treatment is also improved, providing stable signals even after 1 year of storage. Annealing should therefore be considered a necessary modification for applying fiber optic gate electrodes in real-time multimodal investigations of surface reactions at the solid-liquid interface."}],"type":"journal_article","doi":"10.3389/fphy.2023.1202132","language":[{"iso":"eng"}],"acknowledged_ssus":[{"_id":"EM-Fac"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["001038636400001"]},"isi":1,"quality_controlled":"1","publication_identifier":{"eissn":["2296-424X"]},"month":"07","author":[{"first_name":"Roger","last_name":"Hasler","full_name":"Hasler, Roger"},{"full_name":"Steger-Polt, Marie Helene","last_name":"Steger-Polt","first_name":"Marie Helene"},{"full_name":"Reiner-Rozman, Ciril","last_name":"Reiner-Rozman","first_name":"Ciril"},{"full_name":"Fossati, Stefan","first_name":"Stefan","last_name":"Fossati"},{"full_name":"Lee, Seungho","last_name":"Lee","first_name":"Seungho","orcid":"0000-0002-6962-8598","id":"BB243B88-D767-11E9-B658-BC13E6697425"},{"last_name":"Aspermair","first_name":"Patrik","full_name":"Aspermair, Patrik"},{"full_name":"Kleber, Christoph","last_name":"Kleber","first_name":"Christoph"},{"id":"43C61214-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5013-2843","first_name":"Maria","last_name":"Ibáñez","full_name":"Ibáñez, Maria"},{"full_name":"Dostalek, Jakub","first_name":"Jakub","last_name":"Dostalek"},{"full_name":"Knoll, Wolfgang","last_name":"Knoll","first_name":"Wolfgang"}],"volume":11,"date_updated":"2023-12-13T12:04:10Z","date_created":"2023-08-06T22:01:11Z","year":"2023","acknowledgement":"This project has received funding from the European Union’s Horizon 2020 Research and Innovation Programme under the Marie Skłodowska-Curie grant agreement No. 813863–BORGES. We further thank the office of the Federal Government of Lower Austria, K3-Group–Culture, Science and Education, for their financial support as part of the project “Responsive Wound Dressing”. We gratefully acknowledge the financial support from the Austrian Research Promotion Agency (FFG; 888067).\r\nWe thank the Electron Microscopy Facility at IST Austria for their support with sputter coating the FO tips and Bernhard Pichler from AIT for software development to facilitate data evaluation.","publisher":"Frontiers","department":[{"_id":"MaIb"}],"publication_status":"published","file_date_updated":"2023-08-07T07:48:11Z","article_number":"1202132"}]