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Paixao, Evolution & Development 10 (2013) 514–515.","mla":"Azevedo, Ricardo, et al. “Networking Networks.” Evolution & Development, vol. 10, no. 5, Wiley-Blackwell, 2013, pp. 514–15."},"main_file_link":[{"open_access":"0","url":"http://onlinelibrary.wiley.com/doi/10.1111/j.1525-142X.2008.00265.x/abstract"}],"publication":"Evolution & Development","date_published":"2013-01-01T00:00:00Z","type":"journal_article","extern":1,"issue":"5","publist_id":"3858","intvolume":" 10","publisher":"Wiley-Blackwell","title":"Networking networks","status":"public","publication_status":"published","_id":"2900","year":"2013","volume":10,"date_updated":"2021-01-12T07:00:34Z","date_created":"2018-12-11T12:00:14Z","author":[{"first_name":"Ricardo","last_name":"Azevedo","full_name":"Azevedo, Ricardo B"},{"last_name":"Lohaus","first_name":"Rolf","full_name":"Lohaus, Rolf"},{"orcid":"0000-0003-2361-3953","id":"2C5658E6-F248-11E8-B48F-1D18A9856A87","last_name":"Paixao","first_name":"Tiago","full_name":"Tiago Paixao"}]},{"abstract":[{"text":"Motivated by an application in cell biology, we describe an extension of the kinetic data structures framework from Delaunay triangulations to fixed-radius alpha complexes. Our algorithm is implemented\r\nusing CGAL, following the exact geometric computation paradigm. We report on several\r\ntechniques to accelerate the computation that turn our implementation applicable to the underlying biological\r\nproblem.","lang":"eng"}],"type":"conference","alternative_title":["ALENEX"],"pubrep_id":"547","oa_version":"Submitted Version","file":[{"checksum":"a15a3ba22df9445731507f3e06c9fcee","date_updated":"2020-07-14T12:45:52Z","date_created":"2018-12-12T10:08:57Z","relation":"main_file","file_id":"4720","file_size":403013,"content_type":"application/pdf","creator":"system","access_level":"open_access","file_name":"IST-2016-547-v1+1_2013-P-08-MedusaII.pdf"}],"_id":"2906","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","ddc":["500"],"title":"3D kinetic alpha complexes and their implementation","day":"01","has_accepted_license":"1","scopus_import":1,"date_published":"2013-01-01T00:00:00Z","publication":"2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments","citation":{"short":"M. Kerber, H. Edelsbrunner, in:, 2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments, Society of Industrial and Applied Mathematics, 2013, pp. 70–77.","mla":"Kerber, Michael, and Herbert Edelsbrunner. “3D Kinetic Alpha Complexes and Their Implementation.” 2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments, Society of Industrial and Applied Mathematics, 2013, pp. 70–77, doi:10.1137/1.9781611972931.6.","chicago":"Kerber, Michael, and Herbert Edelsbrunner. “3D Kinetic Alpha Complexes and Their Implementation.” In 2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments, 70–77. Society of Industrial and Applied Mathematics, 2013. https://doi.org/10.1137/1.9781611972931.6.","ama":"Kerber M, Edelsbrunner H. 3D kinetic alpha complexes and their implementation. In: 2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments. 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ALENEX: Algorithm Engineering and Experiments, ALENEX, , 70–77."},"page":"70 - 77","file_date_updated":"2020-07-14T12:45:52Z","publist_id":"3841","author":[{"last_name":"Kerber","first_name":"Michael","orcid":"0000-0002-8030-9299","id":"36E4574A-F248-11E8-B48F-1D18A9856A87","full_name":"Kerber, Michael"},{"id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9823-6833","first_name":"Herbert","last_name":"Edelsbrunner","full_name":"Edelsbrunner, Herbert"}],"date_updated":"2021-01-12T07:00:36Z","date_created":"2018-12-11T12:00:16Z","year":"2013","publication_status":"published","department":[{"_id":"HeEd"}],"publisher":"Society of Industrial and Applied Mathematics","month":"01","conference":{"end_date":"2013-01-07","location":"New Orleans, LA, United States","start_date":"2013-01-07","name":"ALENEX: Algorithm Engineering and Experiments"},"doi":"10.1137/1.9781611972931.6","language":[{"iso":"eng"}],"oa":1,"quality_controlled":"1"},{"language":[{"iso":"eng"}],"doi":"10.1093/bioinformatics/btt067","project":[{"call_identifier":"FP7","name":"Limits to selection in biology and in evolutionary computation","grant_number":"250152","_id":"25B07788-B435-11E9-9278-68D0E5697425"}],"quality_controlled":"1","oa":1,"month":"02","volume":29,"date_updated":"2021-01-12T07:00:38Z","date_created":"2018-12-11T12:00:17Z","author":[{"last_name":"Kelleher","first_name":"Jerome","full_name":"Kelleher, Jerome"},{"orcid":"0000-0002-8548-5240","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","last_name":"Barton","first_name":"Nicholas H","full_name":"Barton, Nicholas H"},{"full_name":"Etheridge, Alison","first_name":"Alison","last_name":"Etheridge"}],"department":[{"_id":"NiBa"}],"publisher":"Oxford University Press","publication_status":"published","year":"2013","ec_funded":1,"publist_id":"3833","file_date_updated":"2020-07-14T12:45:52Z","date_published":"2013-02-07T00:00:00Z","page":"955 - 956","citation":{"chicago":"Kelleher, Jerome, Nicholas H Barton, and Alison Etheridge. “Coalescent Simulation in Continuous Space.” Bioinformatics. Oxford University Press, 2013. https://doi.org/10.1093/bioinformatics/btt067.","short":"J. Kelleher, N.H. Barton, A. Etheridge, Bioinformatics 29 (2013) 955–956.","mla":"Kelleher, Jerome, et al. “Coalescent Simulation in Continuous Space.” Bioinformatics, vol. 29, no. 7, Oxford University Press, 2013, pp. 955–56, doi:10.1093/bioinformatics/btt067.","ieee":"J. Kelleher, N. H. Barton, and A. Etheridge, “Coalescent simulation in continuous space,” Bioinformatics, vol. 29, no. 7. Oxford University Press, pp. 955–956, 2013.","apa":"Kelleher, J., Barton, N. H., & Etheridge, A. (2013). Coalescent simulation in continuous space. Bioinformatics. Oxford University Press. https://doi.org/10.1093/bioinformatics/btt067","ista":"Kelleher J, Barton NH, Etheridge A. 2013. Coalescent simulation in continuous space. Bioinformatics. 29(7), 955–956.","ama":"Kelleher J, Barton NH, Etheridge A. Coalescent simulation in continuous space. Bioinformatics. 2013;29(7):955-956. doi:10.1093/bioinformatics/btt067"},"publication":"Bioinformatics","has_accepted_license":"1","day":"07","scopus_import":1,"file":[{"access_level":"open_access","file_name":"IST-2016-556-v1+1_bioinformatics-2013.pdf","file_size":170197,"content_type":"application/pdf","creator":"system","relation":"main_file","file_id":"5189","checksum":"a3b54d7477fac923815ac082403d9bd0","date_created":"2018-12-12T10:16:04Z","date_updated":"2020-07-14T12:45:52Z"}],"oa_version":"Published Version","pubrep_id":"556","intvolume":" 29","ddc":["570"],"status":"public","title":"Coalescent simulation in continuous space","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"2910","issue":"7","abstract":[{"lang":"eng","text":"Coalescent simulation has become an indispensable tool in population genetics and many complex evolutionary scenarios have been incorporated into the basic algorithm. Despite many years of intense interest in spatial structure, however, there are no available methods to simulate the ancestry of a sample of genes that occupy a spatial continuum. This is mainly due to the severe technical problems encountered by the classical model of isolation\r\nby distance. A recently introduced model solves these technical problems and provides a solid theoretical basis for the study of populations evolving in continuous space. We present a detailed algorithm to simulate the coalescent process in this model, and provide an efficient implementation of a generalised version of this algorithm as a freely available Python module."}],"type":"journal_article"},{"issue":"1","abstract":[{"lang":"eng","text":"We survey a class of models for spatially structured populations\r\nwhich we have called spatial Λ-Fleming–Viot processes. They arise from a flexible\r\nframework for modelling in which the key innovation is that random genetic drift\r\nis driven by a Poisson point process of spatial ‘events’. We demonstrate how this\r\novercomes some of the obstructions to modelling populations which evolve in two-\r\n(and higher-) dimensional spatial continua, how its predictions match phenomena\r\nobserved in data and how it fits with classical models. Finally we outline some\r\ndirections for future research."}],"type":"journal_article","file":[{"date_created":"2018-12-12T10:16:52Z","date_updated":"2020-07-14T12:45:52Z","checksum":"ce8a4424385b3086138a1e054e16e0e3","relation":"main_file","file_id":"5242","file_size":702583,"content_type":"application/pdf","creator":"system","file_name":"IST-2016-557-v1+1_BEVrevised.pdf","access_level":"open_access"}],"oa_version":"Submitted Version","pubrep_id":"557","intvolume":" 2013","ddc":["570"],"title":"Modelling evolution in a spatial continuum","status":"public","_id":"2909","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","has_accepted_license":"1","day":"16","scopus_import":1,"date_published":"2013-01-16T00:00:00Z","citation":{"ista":"Barton NH, Etheridge A, Véber A. 2013. Modelling evolution in a spatial continuum. Journal of Statistical Mechanics Theory and Experiment. 2013(1).","apa":"Barton, N. H., Etheridge, A., & Véber, A. (2013). Modelling evolution in a spatial continuum. Journal of Statistical Mechanics Theory and Experiment. IOP Publishing Ltd. https://doi.org/10.1088/1742-5468/2013/01/P01002","ieee":"N. H. Barton, A. Etheridge, and A. Véber, “Modelling evolution in a spatial continuum,” Journal of Statistical Mechanics Theory and Experiment, vol. 2013, no. 1. IOP Publishing Ltd., 2013.","ama":"Barton NH, Etheridge A, Véber A. Modelling evolution in a spatial continuum. Journal of Statistical Mechanics Theory and Experiment. 2013;2013(1). doi:10.1088/1742-5468/2013/01/P01002","chicago":"Barton, Nicholas H, Alison Etheridge, and Amandine Véber. “Modelling Evolution in a Spatial Continuum.” Journal of Statistical Mechanics Theory and Experiment. IOP Publishing Ltd., 2013. https://doi.org/10.1088/1742-5468/2013/01/P01002.","mla":"Barton, Nicholas H., et al. “Modelling Evolution in a Spatial Continuum.” Journal of Statistical Mechanics Theory and Experiment, vol. 2013, no. 1, IOP Publishing Ltd., 2013, doi:10.1088/1742-5468/2013/01/P01002.","short":"N.H. Barton, A. Etheridge, A. Véber, Journal of Statistical Mechanics Theory and Experiment 2013 (2013)."},"publication":"Journal of Statistical Mechanics Theory and Experiment","ec_funded":1,"publist_id":"3834","file_date_updated":"2020-07-14T12:45:52Z","volume":2013,"date_created":"2018-12-11T12:00:17Z","date_updated":"2021-01-12T07:00:37Z","author":[{"id":"4880FE40-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8548-5240","first_name":"Nicholas H","last_name":"Barton","full_name":"Barton, Nicholas H"},{"full_name":"Etheridge, Alison","last_name":"Etheridge","first_name":"Alison"},{"first_name":"Amandine","last_name":"Véber","full_name":"Véber, Amandine"}],"department":[{"_id":"NiBa"}],"publisher":"IOP Publishing Ltd.","publication_status":"published","year":"2013","month":"01","language":[{"iso":"eng"}],"doi":"10.1088/1742-5468/2013/01/P01002","project":[{"call_identifier":"FP7","name":"Limits to selection in biology and in evolutionary computation","_id":"25B07788-B435-11E9-9278-68D0E5697425","grant_number":"250152"}],"quality_controlled":"1","oa":1},{"quality_controlled":"1","oa":1,"language":[{"iso":"eng"}],"doi":"10.1111/jeb.12015","month":"01","publication_status":"published","department":[{"_id":"NiBa"}],"publisher":"Wiley-Blackwell","year":"2013","date_updated":"2021-01-12T07:00:37Z","date_created":"2018-12-11T12:00:17Z","volume":26,"author":[{"full_name":"Barton, Nicholas H","orcid":"0000-0002-8548-5240","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","last_name":"Barton","first_name":"Nicholas H"}],"file_date_updated":"2020-07-14T12:45:52Z","publist_id":"3835","page":"267 - 269","publication":"Journal of Evolutionary Biology","citation":{"mla":"Barton, Nicholas H. “Does Hybridisation Influence Speciation? .” Journal of Evolutionary Biology, vol. 26, no. 2, Wiley-Blackwell, 2013, pp. 267–69, doi:10.1111/jeb.12015.","short":"N.H. Barton, Journal of Evolutionary Biology 26 (2013) 267–269.","chicago":"Barton, Nicholas H. “Does Hybridisation Influence Speciation? .” Journal of Evolutionary Biology. Wiley-Blackwell, 2013. https://doi.org/10.1111/jeb.12015.","ama":"Barton NH. Does hybridisation influence speciation? . Journal of Evolutionary Biology. 2013;26(2):267-269. doi:10.1111/jeb.12015","ista":"Barton NH. 2013. Does hybridisation influence speciation? . Journal of Evolutionary Biology. 26(2), 267–269.","ieee":"N. H. Barton, “Does hybridisation influence speciation? ,” Journal of Evolutionary Biology, vol. 26, no. 2. Wiley-Blackwell, pp. 267–269, 2013.","apa":"Barton, N. H. (2013). Does hybridisation influence speciation? . Journal of Evolutionary Biology. Wiley-Blackwell. https://doi.org/10.1111/jeb.12015"},"date_published":"2013-01-17T00:00:00Z","scopus_import":1,"day":"17","has_accepted_license":"1","status":"public","title":"Does hybridisation influence speciation? ","ddc":["576"],"intvolume":" 26","_id":"2908","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"creator":"system","file_size":13339,"content_type":"text/rtf","access_level":"open_access","file_name":"IST-2013-111-v1+1_Hybridisation_and_speciation_revised.rtf","checksum":"716e88714c3411cd0bd70928b14ea692","date_created":"2018-12-12T10:09:38Z","date_updated":"2020-07-14T12:45:52Z","file_id":"4762","relation":"main_file"},{"file_id":"4763","relation":"main_file","date_created":"2018-12-12T10:09:39Z","date_updated":"2020-07-14T12:45:52Z","checksum":"957fd07c71c1b1eac2c65ae3311aca78","file_name":"IST-2017-111-v1+2_Hybridisation_and_speciation_revised.pdf","access_level":"open_access","creator":"system","content_type":"application/pdf","file_size":103437}],"oa_version":"Submitted Version","pubrep_id":"111","type":"journal_article","abstract":[{"lang":"eng","text":"Hybridization is an almost inevitable component of speciation, and its study can tell us much about that process. However, hybridization itself may have a negligible influence on the origin of species: on the one hand, universally favoured alleles spread readily across hybrid zones, whilst on the other, spatially heterogeneous selection causes divergence despite gene flow. Thus, narrow hybrid zones or occasional hybridisation may hardly affect the process of divergence."}],"issue":"2"}]