[{"acknowledgement":"The Zeiss Merlin with Gatan 3View2XP and Zeiss Auriga were acquired through a CLEM grant from Minister Ingrid Lieten to the VIB Bio-Imaging-Core. Michiel Krols and Saskia Lippens are the recipients of a fellowship from the FWO (Fonds Wetenschappelijk Onderzoek) of Flanders.","oa":1,"quality_controlled":"1","publisher":"Wiley-Blackwell","publication":"Journal of Microscopy","day":"01","year":"2015","has_accepted_license":"1","date_created":"2018-12-11T11:54:30Z","doi":"10.1111/jmi.12211","date_published":"2015-08-01T00:00:00Z","page":"80 - 96","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"mla":"Kremer, A., et al. “Developing 3D SEM in a Broad Biological Context.” Journal of Microscopy, vol. 259, no. 2, Wiley-Blackwell, 2015, pp. 80–96, doi:10.1111/jmi.12211.","apa":"Kremer, A., Lippens, S., Bartunkova, S., Asselbergh, B., Blanpain, C., Fendrych, M., … Guérin, C. (2015). Developing 3D SEM in a broad biological context. Journal of Microscopy. Wiley-Blackwell. https://doi.org/10.1111/jmi.12211","ama":"Kremer A, Lippens S, Bartunkova S, et al. Developing 3D SEM in a broad biological context. Journal of Microscopy. 2015;259(2):80-96. doi:10.1111/jmi.12211","ieee":"A. Kremer et al., “Developing 3D SEM in a broad biological context,” Journal of Microscopy, vol. 259, no. 2. Wiley-Blackwell, pp. 80–96, 2015.","short":"A. Kremer, S. Lippens, S. Bartunkova, B. Asselbergh, C. Blanpain, M. Fendrych, A. Goossens, M. Holt, S. Janssens, M. Krols, J. Larsimont, C. Mc Guire, M. Nowack, X. Saelens, A. Schertel, B. Schepens, M. Slezak, V. Timmerman, C. Theunis, R. Van Brempt, Y. Visser, C. Guérin, Journal of Microscopy 259 (2015) 80–96.","chicago":"Kremer, A, Stefaan Lippens, Sonia Bartunkova, Bob Asselbergh, Cendric Blanpain, Matyas Fendrych, A Goossens, et al. “Developing 3D SEM in a Broad Biological Context.” Journal of Microscopy. Wiley-Blackwell, 2015. https://doi.org/10.1111/jmi.12211.","ista":"Kremer A, Lippens S, Bartunkova S, Asselbergh B, Blanpain C, Fendrych M, Goossens A, Holt M, Janssens S, Krols M, Larsimont J, Mc Guire C, Nowack M, Saelens X, Schertel A, Schepens B, Slezak M, Timmerman V, Theunis C, Van Brempt R, Visser Y, Guérin C. 2015. Developing 3D SEM in a broad biological context. Journal of Microscopy. 259(2), 80–96."},"title":"Developing 3D SEM in a broad biological context","publist_id":"5218","author":[{"last_name":"Kremer","full_name":"Kremer, A","first_name":"A"},{"last_name":"Lippens","full_name":"Lippens, Stefaan","first_name":"Stefaan"},{"last_name":"Bartunkova","full_name":"Bartunkova, Sonia","first_name":"Sonia"},{"full_name":"Asselbergh, Bob","last_name":"Asselbergh","first_name":"Bob"},{"first_name":"Cendric","full_name":"Blanpain, Cendric","last_name":"Blanpain"},{"first_name":"Matyas","id":"43905548-F248-11E8-B48F-1D18A9856A87","full_name":"Fendrych, Matyas","orcid":"0000-0002-9767-8699","last_name":"Fendrych"},{"full_name":"Goossens, A","last_name":"Goossens","first_name":"A"},{"last_name":"Holt","full_name":"Holt, Matthew","first_name":"Matthew"},{"last_name":"Janssens","full_name":"Janssens, Sophie","first_name":"Sophie"},{"last_name":"Krols","full_name":"Krols, Michiel","first_name":"Michiel"},{"full_name":"Larsimont, Jean","last_name":"Larsimont","first_name":"Jean"},{"full_name":"Mc Guire, Conor","last_name":"Mc Guire","first_name":"Conor"},{"full_name":"Nowack, Moritz","last_name":"Nowack","first_name":"Moritz"},{"last_name":"Saelens","full_name":"Saelens, Xavier","first_name":"Xavier"},{"first_name":"Andreas","last_name":"Schertel","full_name":"Schertel, Andreas"},{"first_name":"B","last_name":"Schepens","full_name":"Schepens, B"},{"first_name":"M","full_name":"Slezak, M","last_name":"Slezak"},{"first_name":"Vincent","full_name":"Timmerman, Vincent","last_name":"Timmerman"},{"last_name":"Theunis","full_name":"Theunis, Clara","first_name":"Clara"},{"last_name":"Van Brempt","full_name":"Van Brempt, Ronald","first_name":"Ronald"},{"full_name":"Visser, Y","last_name":"Visser","first_name":"Y"},{"first_name":"Christophe","last_name":"Guérin","full_name":"Guérin, Christophe"}],"oa_version":"Published Version","abstract":[{"lang":"eng","text":"When electron microscopy (EM) was introduced in the 1930s it gave scientists their first look into the nanoworld of cells. Over the last 80 years EM has vastly increased our understanding of the complex cellular structures that underlie the diverse functions that cells need to maintain life. One drawback that has been difficult to overcome was the inherent lack of volume information, mainly due to the limit on the thickness of sections that could be viewed in a transmission electron microscope (TEM). For many years scientists struggled to achieve three-dimensional (3D) EM using serial section reconstructions, TEM tomography, and scanning EM (SEM) techniques such as freeze-fracture. Although each technique yielded some special information, they required a significant amount of time and specialist expertise to obtain even a very small 3D EM dataset. Almost 20 years ago scientists began to exploit SEMs to image blocks of embedded tissues and perform serial sectioning of these tissues inside the SEM chamber. Using first focused ion beams (FIB) and subsequently robotic ultramicrotomes (serial block-face, SBF-SEM) microscopists were able to collect large volumes of 3D EM information at resolutions that could address many important biological questions, and do so in an efficient manner. We present here some examples of 3D EM taken from the many diverse specimens that have been imaged in our core facility. We propose that the next major step forward will be to efficiently correlate functional information obtained using light microscopy (LM) with 3D EM datasets to more completely investigate the important links between cell structures and their functions."}],"intvolume":" 259","month":"08","scopus_import":1,"language":[{"iso":"eng"}],"file":[{"date_updated":"2020-07-14T12:45:19Z","file_size":2899898,"creator":"system","date_created":"2018-12-12T10:11:19Z","file_name":"IST-2016-459-v1+1_KREMER_et_al-2015-Journal_of_Microscopy.pdf","content_type":"application/pdf","access_level":"open_access","relation":"main_file","checksum":"3649c5372d1644062d728ea9287e367f","file_id":"4872"}],"publication_status":"published","license":"https://creativecommons.org/licenses/by/4.0/","volume":259,"issue":"2","_id":"1879","pubrep_id":"459","status":"public","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"type":"journal_article","ddc":["570"],"date_updated":"2021-01-12T06:53:48Z","department":[{"_id":"JiFr"}],"file_date_updated":"2020-07-14T12:45:19Z"},{"abstract":[{"lang":"eng","text":"We investigate the relation between Bose-Einstein condensation (BEC) and superfluidity in the ground state of a one-dimensional model of interacting bosons in a strong random potential. We prove rigorously that in a certain parameter regime the superfluid fraction can be arbitrarily small while complete BEC prevails. In another regime there is both complete BEC and complete superfluidity, despite the strong disorder"}],"oa_version":"Published Version","scopus_import":1,"intvolume":" 17","month":"01","publication_status":"published","language":[{"iso":"eng"}],"file":[{"content_type":"application/pdf","access_level":"open_access","relation":"main_file","checksum":"38fdf2b5ac30445e26a5d613abd84b16","file_id":"4963","date_updated":"2020-07-14T12:45:20Z","file_size":768108,"creator":"system","date_created":"2018-12-12T10:12:44Z","file_name":"IST-2016-447-v1+1_document_1_.pdf"}],"volume":17,"_id":"1880","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"type":"journal_article","pubrep_id":"447","status":"public","date_updated":"2021-01-12T06:53:48Z","ddc":["530"],"file_date_updated":"2020-07-14T12:45:20Z","department":[{"_id":"RoSe"}],"acknowledgement":"Support from the Natural Sciences and Engineering Research Council of Canada NSERC (MK and RS) and from the Austrian Science Fund FWF (JY, under project P 22929-N16) is gratefully acknowledged","oa":1,"quality_controlled":"1","publisher":"IOP Publishing Ltd.","year":"2015","has_accepted_license":"1","publication":"New Journal of Physics","day":"15","date_created":"2018-12-11T11:54:30Z","doi":"10.1088/1367-2630/17/1/013022","date_published":"2015-01-15T00:00:00Z","article_number":"013022","project":[{"_id":"26450934-B435-11E9-9278-68D0E5697425","name":"NSERC Postdoctoral fellowship"}],"citation":{"mla":"Könenberg, Martin, et al. “Superfluid Behavior of a Bose-Einstein Condensate in a Random Potential.” New Journal of Physics, vol. 17, 013022, IOP Publishing Ltd., 2015, doi:10.1088/1367-2630/17/1/013022.","ieee":"M. Könenberg, T. Moser, R. Seiringer, and J. Yngvason, “Superfluid behavior of a Bose-Einstein condensate in a random potential,” New Journal of Physics, vol. 17. IOP Publishing Ltd., 2015.","short":"M. Könenberg, T. Moser, R. Seiringer, J. Yngvason, New Journal of Physics 17 (2015).","apa":"Könenberg, M., Moser, T., Seiringer, R., & Yngvason, J. (2015). Superfluid behavior of a Bose-Einstein condensate in a random potential. New Journal of Physics. IOP Publishing Ltd. https://doi.org/10.1088/1367-2630/17/1/013022","ama":"Könenberg M, Moser T, Seiringer R, Yngvason J. Superfluid behavior of a Bose-Einstein condensate in a random potential. New Journal of Physics. 2015;17. doi:10.1088/1367-2630/17/1/013022","chicago":"Könenberg, Martin, Thomas Moser, Robert Seiringer, and Jakob Yngvason. “Superfluid Behavior of a Bose-Einstein Condensate in a Random Potential.” New Journal of Physics. IOP Publishing Ltd., 2015. https://doi.org/10.1088/1367-2630/17/1/013022.","ista":"Könenberg M, Moser T, Seiringer R, Yngvason J. 2015. Superfluid behavior of a Bose-Einstein condensate in a random potential. New Journal of Physics. 17, 013022."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"first_name":"Martin","last_name":"Könenberg","full_name":"Könenberg, Martin"},{"id":"2B5FC9A4-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas","last_name":"Moser","full_name":"Moser, Thomas"},{"orcid":"0000-0002-6781-0521","full_name":"Seiringer, Robert","last_name":"Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","first_name":"Robert"},{"first_name":"Jakob","last_name":"Yngvason","full_name":"Yngvason, Jakob"}],"publist_id":"5214","title":"Superfluid behavior of a Bose-Einstein condensate in a random potential"},{"date_updated":"2021-01-12T06:53:49Z","department":[{"_id":"ToHe"},{"_id":"KrCh"}],"_id":"1882","status":"public","conference":{"name":"FACS: Formal Aspects of Component Software","start_date":"2014-09-10","location":"Bertinoro, Italy","end_date":"2014-09-12"},"type":"conference","language":[{"iso":"eng"}],"publication_status":"published","ec_funded":1,"volume":8997,"oa_version":"Preprint","abstract":[{"text":"We provide a framework for compositional and iterative design and verification of systems with quantitative information, such as rewards, time or energy. It is based on disjunctive modal transition systems where we allow actions to bear various types of quantitative information. Throughout the design process the actions can be further refined and the information made more precise. We show how to compute the results of standard operations on the systems, including the quotient (residual), which has not been previously considered for quantitative non-deterministic systems. Our quantitative framework has close connections to the modal nu-calculus and is compositional with respect to general notions of distances between systems and the standard operations.","lang":"eng"}],"intvolume":" 8997","month":"01","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1408.1256"}],"alternative_title":["LNCS"],"scopus_import":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"mla":"Fahrenberg, Uli, et al. Compositionality for Quantitative Specifications. Vol. 8997, Springer, 2015, pp. 306–24, doi:10.1007/978-3-319-15317-9_19.","apa":"Fahrenberg, U., Kretinsky, J., Legay, A., & Traonouez, L. (2015). Compositionality for quantitative specifications (Vol. 8997, pp. 306–324). Presented at the FACS: Formal Aspects of Component Software, Bertinoro, Italy: Springer. https://doi.org/10.1007/978-3-319-15317-9_19","ama":"Fahrenberg U, Kretinsky J, Legay A, Traonouez L. Compositionality for quantitative specifications. In: Vol 8997. Springer; 2015:306-324. doi:10.1007/978-3-319-15317-9_19","ieee":"U. Fahrenberg, J. Kretinsky, A. Legay, and L. Traonouez, “Compositionality for quantitative specifications,” presented at the FACS: Formal Aspects of Component Software, Bertinoro, Italy, 2015, vol. 8997, pp. 306–324.","short":"U. Fahrenberg, J. Kretinsky, A. Legay, L. Traonouez, in:, Springer, 2015, pp. 306–324.","chicago":"Fahrenberg, Uli, Jan Kretinsky, Axel Legay, and Louis Traonouez. “Compositionality for Quantitative Specifications,” 8997:306–24. Springer, 2015. https://doi.org/10.1007/978-3-319-15317-9_19.","ista":"Fahrenberg U, Kretinsky J, Legay A, Traonouez L. 2015. Compositionality for quantitative specifications. FACS: Formal Aspects of Component Software, LNCS, vol. 8997, 306–324."},"title":"Compositionality for quantitative specifications","author":[{"full_name":"Fahrenberg, Uli","last_name":"Fahrenberg","first_name":"Uli"},{"first_name":"Jan","id":"44CEF464-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8122-2881","full_name":"Kretinsky, Jan","last_name":"Kretinsky"},{"first_name":"Axel","full_name":"Legay, Axel","last_name":"Legay"},{"first_name":"Louis","full_name":"Traonouez, Louis","last_name":"Traonouez"}],"publist_id":"5216","project":[{"call_identifier":"FP7","_id":"25EE3708-B435-11E9-9278-68D0E5697425","grant_number":"267989","name":"Quantitative Reactive Modeling"},{"_id":"25832EC2-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","grant_number":"S 11407_N23","name":"Rigorous Systems Engineering"}],"day":"30","year":"2015","date_created":"2018-12-11T11:54:31Z","date_published":"2015-01-30T00:00:00Z","doi":"10.1007/978-3-319-15317-9_19","page":"306 - 324","acknowledgement":"This research was funded in part by the European Research Council (ERC) under grant agreement 267989 (QUAREM), by the Austrian Science Fund (FWF) project S11402-N23 (RiSE), and by the Czech Science Foundation, grant No. P202/12/G061.","oa":1,"quality_controlled":"1","publisher":"Springer"},{"_id":"1883","type":"journal_article","article_type":"original","status":"public","date_updated":"2021-01-12T06:53:49Z","department":[{"_id":"NiBa"}],"abstract":[{"text":"We introduce a one-parametric family of tree growth models, in which branching probabilities decrease with branch age τ as τ-α. Depending on the exponent α, the scaling of tree depth with tree size n displays a transition between the logarithmic scaling of random trees and an algebraic growth. At the transition (α=1) tree depth grows as (logn)2. This anomalous scaling is in good agreement with the trend observed in evolution of biological species, thus providing a theoretical support for age-dependent speciation and associating it to the occurrence of a critical point.\r\n","lang":"eng"}],"oa_version":"Preprint","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1012.3298"}],"scopus_import":1,"intvolume":" 91","month":"02","publication_status":"published","language":[{"iso":"eng"}],"issue":"2","volume":91,"article_number":"022803","citation":{"mla":"Keller-Schmidt, Stephanie, et al. “Anomalous Scaling in an Age-Dependent Branching Model.” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 91, no. 2, 022803, American Institute of Physics, 2015, doi:10.1103/PhysRevE.91.022803.","ieee":"S. Keller-Schmidt, M. Tugrul, V. Eguíluz, E. Hernandez Garcia, and K. Klemm, “Anomalous scaling in an age-dependent branching model,” Physical Review E Statistical Nonlinear and Soft Matter Physics, vol. 91, no. 2. American Institute of Physics, 2015.","short":"S. Keller-Schmidt, M. Tugrul, V. Eguíluz, E. Hernandez Garcia, K. Klemm, Physical Review E Statistical Nonlinear and Soft Matter Physics 91 (2015).","apa":"Keller-Schmidt, S., Tugrul, M., Eguíluz, V., Hernandez Garcia, E., & Klemm, K. (2015). Anomalous scaling in an age-dependent branching model. Physical Review E Statistical Nonlinear and Soft Matter Physics. American Institute of Physics. https://doi.org/10.1103/PhysRevE.91.022803","ama":"Keller-Schmidt S, Tugrul M, Eguíluz V, Hernandez Garcia E, Klemm K. Anomalous scaling in an age-dependent branching model. Physical Review E Statistical Nonlinear and Soft Matter Physics. 2015;91(2). doi:10.1103/PhysRevE.91.022803","chicago":"Keller-Schmidt, Stephanie, Murat Tugrul, Víctor Eguíluz, Emilio Hernandez Garcia, and Konstantin Klemm. “Anomalous Scaling in an Age-Dependent Branching Model.” Physical Review E Statistical Nonlinear and Soft Matter Physics. American Institute of Physics, 2015. https://doi.org/10.1103/PhysRevE.91.022803.","ista":"Keller-Schmidt S, Tugrul M, Eguíluz V, Hernandez Garcia E, Klemm K. 2015. Anomalous scaling in an age-dependent branching model. Physical Review E Statistical Nonlinear and Soft Matter Physics. 91(2), 022803."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_processing_charge":"No","external_id":{"arxiv":["1012.3298"]},"author":[{"first_name":"Stephanie","last_name":"Keller-Schmidt","full_name":"Keller-Schmidt, Stephanie"},{"orcid":"0000-0002-8523-0758","full_name":"Tugrul, Murat","last_name":"Tugrul","id":"37C323C6-F248-11E8-B48F-1D18A9856A87","first_name":"Murat"},{"first_name":"Víctor","full_name":"Eguíluz, Víctor","last_name":"Eguíluz"},{"first_name":"Emilio","last_name":"Hernandez Garcia","full_name":"Hernandez Garcia, Emilio"},{"full_name":"Klemm, Konstantin","last_name":"Klemm","first_name":"Konstantin"}],"publist_id":"5213","title":"Anomalous scaling in an age-dependent branching model","oa":1,"publisher":"American Institute of Physics","quality_controlled":"1","year":"2015","publication":"Physical Review E Statistical Nonlinear and Soft Matter Physics","day":"02","date_created":"2018-12-11T11:54:31Z","date_published":"2015-02-02T00:00:00Z","doi":"10.1103/PhysRevE.91.022803"},{"citation":{"chicago":"Cires Rodriguez, Eduardo, and José Prieto. “Phylogenetic Relationships of Petrocoptis A. Braun Ex Endl. (Caryophyllaceae), a Discussed Genus from the Iberian Peninsula.” Journal of Plant Research. Springer, 2015. https://doi.org/10.1007/s10265-014-0691-6.","ista":"Cires Rodriguez E, Prieto J. 2015. Phylogenetic relationships of Petrocoptis A. Braun ex Endl. (Caryophyllaceae), a discussed genus from the Iberian Peninsula. Journal of Plant Research. 128(2), 223–238.","mla":"Cires Rodriguez, Eduardo, and José Prieto. “Phylogenetic Relationships of Petrocoptis A. Braun Ex Endl. (Caryophyllaceae), a Discussed Genus from the Iberian Peninsula.” Journal of Plant Research, vol. 128, no. 2, Springer, 2015, pp. 223–38, doi:10.1007/s10265-014-0691-6.","apa":"Cires Rodriguez, E., & Prieto, J. (2015). Phylogenetic relationships of Petrocoptis A. Braun ex Endl. (Caryophyllaceae), a discussed genus from the Iberian Peninsula. Journal of Plant Research. Springer. https://doi.org/10.1007/s10265-014-0691-6","ama":"Cires Rodriguez E, Prieto J. Phylogenetic relationships of Petrocoptis A. Braun ex Endl. (Caryophyllaceae), a discussed genus from the Iberian Peninsula. Journal of Plant Research. 2015;128(2):223-238. doi:10.1007/s10265-014-0691-6","ieee":"E. Cires Rodriguez and J. Prieto, “Phylogenetic relationships of Petrocoptis A. Braun ex Endl. (Caryophyllaceae), a discussed genus from the Iberian Peninsula,” Journal of Plant Research, vol. 128, no. 2. Springer, pp. 223–238, 2015.","short":"E. Cires Rodriguez, J. Prieto, Journal of Plant Research 128 (2015) 223–238."},"date_updated":"2021-01-12T06:53:47Z","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","publist_id":"5217","author":[{"full_name":"Cires Rodriguez, Eduardo","last_name":"Cires Rodriguez","id":"2AD56A7A-F248-11E8-B48F-1D18A9856A87","first_name":"Eduardo"},{"first_name":"José","full_name":"Prieto, José","last_name":"Prieto"}],"title":"Phylogenetic relationships of Petrocoptis A. Braun ex Endl. (Caryophyllaceae), a discussed genus from the Iberian Peninsula","department":[{"_id":"JiFr"}],"_id":"1878","type":"journal_article","status":"public","year":"2015","publication_status":"published","publication":"Journal of Plant Research","language":[{"iso":"eng"}],"day":"24","page":"223 - 238","date_created":"2018-12-11T11:54:30Z","doi":"10.1007/s10265-014-0691-6","issue":"2","volume":128,"date_published":"2015-01-24T00:00:00Z","abstract":[{"text":"Petrocoptis is a small genus of chasmophytic plants endemic to the Iberian Peninsula, with some localized populations in the French Pyrenees. Within the genus, a dozen species have been recognized based on morphological diversity, most of them with limited distribution area, in small populations and frequently with potential threats to their survival. To date, however, a molecular evaluation of the current systematic treatments has not been carried out. The aim of the present study is to infer phylogenetic relationships among its subordinate taxa by using plastidial rps16 intron and nuclear internal transcribed spacer (ITS) DNA sequences; and evaluate the phylogenetic placement of the genus Petrocoptis within the family Caryophyllaceae. The monophyly of Petrocoptis is supported by both ITS and rps16 intron sequence analyses. Furthermore, time estimates using BEAST analyses indicate a Middle to Late Miocene diversification (10.59 Myr, 6.44–15.26 Myr highest posterior densities [HPD], for ITS; 14.30 Myr, 8.61–21.00 Myr HPD, for rps16 intron).","lang":"eng"}],"oa_version":"None","publisher":"Springer","quality_controlled":"1","scopus_import":1,"intvolume":" 128","month":"01"}]