[{"month":"02","day":"18","quality_controlled":0,"page":"5023 - 5033","publication":"Journal of Biological Chemistry","citation":{"chicago":"Yip, Chui, Michael Harbour, Kamburapola Jayawardena, Ian Fearnley, and Leonid A Sazanov. “Evolution of Respiratory Complex I "Supernumerary" Subunits Are Present in the α-Proteobacterial Enzyme.” Journal of Biological Chemistry. American Society for Biochemistry and Molecular Biology, 2011. https://doi.org/10.1074/jbc.M110.194993.","mla":"Yip, Chui, et al. “Evolution of Respiratory Complex I "Supernumerary" Subunits Are Present in the α-Proteobacterial Enzyme.” Journal of Biological Chemistry, vol. 286, no. 7, American Society for Biochemistry and Molecular Biology, 2011, pp. 5023–33, doi:10.1074/jbc.M110.194993.","short":"C. Yip, M. Harbour, K. Jayawardena, I. Fearnley, L.A. Sazanov, Journal of Biological Chemistry 286 (2011) 5023–5033.","ista":"Yip C, Harbour M, Jayawardena K, Fearnley I, Sazanov LA. 2011. Evolution of respiratory complex I "Supernumerary" subunits are present in the α-proteobacterial enzyme. Journal of Biological Chemistry. 286(7), 5023–5033.","apa":"Yip, C., Harbour, M., Jayawardena, K., Fearnley, I., & Sazanov, L. A. (2011). Evolution of respiratory complex I "Supernumerary" subunits are present in the α-proteobacterial enzyme. Journal of Biological Chemistry. American Society for Biochemistry and Molecular Biology. https://doi.org/10.1074/jbc.M110.194993","ieee":"C. Yip, M. Harbour, K. Jayawardena, I. Fearnley, and L. A. Sazanov, “Evolution of respiratory complex I "Supernumerary" subunits are present in the α-proteobacterial enzyme,” Journal of Biological Chemistry, vol. 286, no. 7. American Society for Biochemistry and Molecular Biology, pp. 5023–5033, 2011.","ama":"Yip C, Harbour M, Jayawardena K, Fearnley I, Sazanov LA. Evolution of respiratory complex I "Supernumerary" subunits are present in the α-proteobacterial enzyme. Journal of Biological Chemistry. 2011;286(7):5023-5033. doi:10.1074/jbc.M110.194993"},"doi":"10.1074/jbc.M110.194993","date_published":"2011-02-18T00:00:00Z","type":"journal_article","extern":1,"abstract":[{"lang":"eng","text":"Modern α-proteobacteria are thought to be closely related to the ancient symbiont of eukaryotes, an ancestor of mitochondria. Respiratory complex I from α-proteobacteria and mitochondria is well conserved at the level of the 14 "core" subunits, consistent with that notion. Mitochondrial complex I contains the core subunits, present in all species, and up to 31 "supernumerary" subunits, generally thought to have originated only within eukaryotic lineages. However, the full protein composition of an α-proteobacterial complex I has not been established previously. Here, we report the first purification and characterization of complex I from the α-proteobacterium Paracoccus denitrificans. Single particle electron microscopy shows that the complex has a well defined L-shape. Unexpectedly, in addition to the 14 core subunits, the enzyme also contains homologues of three supernumerary mitochondrial subunits as follows: B17.2, AQDQ/18, and 13 kDa (bovine nomenclature). This finding suggests that evolution of complex I via addition of supernumerary or "accessory" subunits started before the original endosymbiotic event that led to the creation of the eukaryotic cell. It also provides further confirmation that α-proteobacteria are the closest extant relatives of mitochondria."}],"publist_id":"5112","issue":"7","status":"public","publication_status":"published","title":"Evolution of respiratory complex I "Supernumerary" subunits are present in the α-proteobacterial enzyme","intvolume":" 286","publisher":"American Society for Biochemistry and Molecular Biology","_id":"1975","acknowledgement":"This work was supported by the Medical Research Council. ","year":"2011","date_created":"2018-12-11T11:55:00Z","date_updated":"2021-01-12T06:54:27Z","volume":286,"author":[{"first_name":"Chui","last_name":"Yip","full_name":"Yip, Chui Y"},{"full_name":"Harbour, Michael E","last_name":"Harbour","first_name":"Michael"},{"full_name":"Jayawardena, Kamburapola G","first_name":"Kamburapola","last_name":"Jayawardena"},{"full_name":"Fearnley, Ian M","first_name":"Ian","last_name":"Fearnley"},{"id":"338D39FE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0977-7989","first_name":"Leonid A","last_name":"Sazanov","full_name":"Leonid Sazanov"}]},{"day":"25","month":"08","doi":"10.1038/nature10330","date_published":"2011-08-25T00:00:00Z","citation":{"apa":"Efremov, R., & Sazanov, L. A. (2011). Structure of the membrane domain of respiratory complex i. Nature. Nature Publishing Group. https://doi.org/10.1038/nature10330","ieee":"R. Efremov and L. A. Sazanov, “Structure of the membrane domain of respiratory complex i,” Nature, vol. 476, no. 7361. Nature Publishing Group, pp. 414–421, 2011.","ista":"Efremov R, Sazanov LA. 2011. Structure of the membrane domain of respiratory complex i. Nature. 476(7361), 414–421.","ama":"Efremov R, Sazanov LA. Structure of the membrane domain of respiratory complex i. Nature. 2011;476(7361):414-421. doi:10.1038/nature10330","chicago":"Efremov, Rouslan, and Leonid A Sazanov. “Structure of the Membrane Domain of Respiratory Complex I.” Nature. Nature Publishing Group, 2011. https://doi.org/10.1038/nature10330.","short":"R. Efremov, L.A. Sazanov, Nature 476 (2011) 414–421.","mla":"Efremov, Rouslan, and Leonid A. Sazanov. “Structure of the Membrane Domain of Respiratory Complex I.” Nature, vol. 476, no. 7361, Nature Publishing Group, 2011, pp. 414–21, doi:10.1038/nature10330."},"publication":"Nature","page":"414 - 421","quality_controlled":0,"issue":"7361","publist_id":"5110","abstract":[{"text":"Complex I is the first and largest enzyme of the respiratory chain, coupling electron transfer between NADH and ubiquinone to the translocation of four protons across the membrane. It has a central role in cellular energy production and has been implicated in many human neurodegenerative diseases. The L-shaped enzyme consists of hydrophilic and membrane domains. Previously, we determined the structure of the hydrophilic domain. Here we report the crystal structure of the Esherichia coli complex I membrane domain at 3.0 Ã. resolution. It includes six subunits, NuoL, NuoM, NuoN, NuoA, NuoJ and NuoK, with 55 transmembrane helices. The fold of the homologous antiporter-like subunits L, M and N is novel, with two inverted structural repeats of five transmembrane helices arranged, unusually, face-to-back. Each repeat includes a discontinuous transmembrane helix and forms half of a channel across the membrane. A network of conserved polar residues connects the two half-channels, completing the proton translocation pathway. Unexpectedly, lysines rather than carboxylate residues act as the main elements of the proton pump in these subunits. The fourth probable proton-translocation channel is at the interface of subunits N, K, J and A. The structure indicates that proton translocation in complex I, uniquely, involves coordinated conformational changes in six symmetrical structural elements.","lang":"eng"}],"extern":1,"type":"journal_article","author":[{"first_name":"Rouslan","last_name":"Efremov","full_name":"Efremov, Rouslan G"},{"full_name":"Leonid Sazanov","orcid":"0000-0002-0977-7989","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","last_name":"Sazanov","first_name":"Leonid A"}],"volume":476,"date_created":"2018-12-11T11:54:59Z","date_updated":"2021-01-12T06:54:26Z","acknowledgement":"This work was funded by the Medical Research Council.","_id":"1973","year":"2011","intvolume":" 476","publisher":"Nature Publishing Group","publication_status":"published","title":"Structure of the membrane domain of respiratory complex i","status":"public"},{"_id":"1974","year":"2011","acknowledgement":"The work in authors’ laboratory was funded by the Medical Research Council.","intvolume":" 21","publisher":"Elsevier","title":"Respiratory complex I: 'steam engine' of the cell?","status":"public","publication_status":"published","author":[{"last_name":"Efremov","first_name":"Rouslan","full_name":"Efremov, Rouslan G"},{"full_name":"Leonid Sazanov","first_name":"Leonid A","last_name":"Sazanov","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0977-7989"}],"volume":21,"date_updated":"2021-01-12T06:54:27Z","date_created":"2018-12-11T11:54:59Z","type":"journal_article","issue":"4","publist_id":"5111","abstract":[{"lang":"eng","text":"Complex I is the first enzyme of the respiratory chain and plays a central role in cellular energy production. It has been implicated in many human neurodegenerative diseases, as well as in ageing. One of the biggest membrane protein complexes, it is an L-shaped assembly consisting of hydrophilic and membrane domains. Previously, we have determined structures of the hydrophilic domain in several redox states. Last year was marked by fascinating breakthroughs in the understanding of the complete structure. We described the architecture of the membrane domain and of the entire bacterial complex I. X-ray analysis of the larger mitochondrial enzyme has also been published. The core subunits of the bacterial and mitochondrial enzymes have remarkably similar structures. The proposed mechanism of coupling between electron transfer and proton translocation involves long-range conformational changes, coordinated in part by a long α-helix, akin to the coupling rod of a steam engine."}],"extern":1,"citation":{"ista":"Efremov R, Sazanov LA. 2011. Respiratory complex I: ‘steam engine’ of the cell? Current Opinion in Structural Biology. 21(4), 532–540.","ieee":"R. Efremov and L. A. Sazanov, “Respiratory complex I: ‘steam engine’ of the cell?,” Current Opinion in Structural Biology, vol. 21, no. 4. Elsevier, pp. 532–540, 2011.","apa":"Efremov, R., & Sazanov, L. A. (2011). Respiratory complex I: “steam engine” of the cell? Current Opinion in Structural Biology. Elsevier. https://doi.org/10.1016/j.sbi.2011.07.002","ama":"Efremov R, Sazanov LA. Respiratory complex I: “steam engine” of the cell? Current Opinion in Structural Biology. 2011;21(4):532-540. doi:10.1016/j.sbi.2011.07.002","chicago":"Efremov, Rouslan, and Leonid A Sazanov. “Respiratory Complex I: ‘steam Engine’ of the Cell?” Current Opinion in Structural Biology. Elsevier, 2011. https://doi.org/10.1016/j.sbi.2011.07.002.","mla":"Efremov, Rouslan, and Leonid A. Sazanov. “Respiratory Complex I: ‘steam Engine’ of the Cell?” Current Opinion in Structural Biology, vol. 21, no. 4, Elsevier, 2011, pp. 532–40, doi:10.1016/j.sbi.2011.07.002.","short":"R. Efremov, L.A. Sazanov, Current Opinion in Structural Biology 21 (2011) 532–540."},"publication":"Current Opinion in Structural Biology","page":"532 - 540","quality_controlled":0,"doi":"10.1016/j.sbi.2011.07.002","date_published":"2011-08-01T00:00:00Z","day":"01","month":"08"},{"extern":1,"publist_id":"5098","issue":"5","abstract":[{"text":"\n\nIn Escherichia coli, the pole-to-pole oscillation of the Min proteins directs septum formation to midcell, which is required for symmetric cell division. In vitro, protein waves emerge from the self-organization of MinD, a membrane-binding ATPase, and its activator MinE. For wave propagation, the proteins need to cycle through states of collective membrane binding and unbinding. Although MinD presumably undergoes cooperative membrane attachment, it is unclear how synchronous detachment is coordinated. We used confocal and single-molecule microscopy to elucidate the order of events during Min wave propagation. We propose that protein detachment at the rear of the wave, and the formation of the E-ring, are accomplished by two complementary processes: first, local accumulation of MinE due to rapid rebinding, leading to dynamic instability; and second, a structural change induced by membrane-interaction of MinE in an equimolar MinD-MinE (MinDE) complex, which supports the robustness of pattern formation.","lang":"eng"}],"type":"journal_article","volume":18,"date_created":"2018-12-11T11:55:03Z","date_updated":"2021-01-12T06:54:31Z","author":[{"orcid":"0000-0001-7309-9724","id":"462D4284-F248-11E8-B48F-1D18A9856A87","last_name":"Loose","first_name":"Martin","full_name":"Martin Loose"},{"full_name":"Fischer-Friedrich, Elisabeth","first_name":"Elisabeth","last_name":"Fischer Friedrich"},{"full_name":"Herold, Christoph","first_name":"Christoph","last_name":"Herold"},{"last_name":"Kruse","first_name":"Karsten","full_name":"Kruse, Karsten"},{"full_name":"Schwille, Petra ","last_name":"Schwille","first_name":"Petra"}],"intvolume":" 18","publisher":"Nature Publishing Group","title":"Min protein patterns emerge from rapid rebinding and membrane interaction of MinE","status":"public","publication_status":"published","year":"2011","_id":"1985","acknowledgement":"This work was also supported by the Max Planck Society (M.L., E.F.-F., P.S.).","month":"05","day":"01","date_published":"2011-05-01T00:00:00Z","doi":"10.1038/nsmb.2037","page":"577 - 583","quality_controlled":0,"citation":{"mla":"Loose, Martin, et al. “Min Protein Patterns Emerge from Rapid Rebinding and Membrane Interaction of MinE.” Nature Structural and Molecular Biology, vol. 18, no. 5, Nature Publishing Group, 2011, pp. 577–83, doi:10.1038/nsmb.2037.","short":"M. Loose, E. Fischer Friedrich, C. Herold, K. Kruse, P. Schwille, Nature Structural and Molecular Biology 18 (2011) 577–583.","chicago":"Loose, Martin, Elisabeth Fischer Friedrich, Christoph Herold, Karsten Kruse, and Petra Schwille. “Min Protein Patterns Emerge from Rapid Rebinding and Membrane Interaction of MinE.” Nature Structural and Molecular Biology. Nature Publishing Group, 2011. https://doi.org/10.1038/nsmb.2037.","ama":"Loose M, Fischer Friedrich E, Herold C, Kruse K, Schwille P. Min protein patterns emerge from rapid rebinding and membrane interaction of MinE. Nature Structural and Molecular Biology. 2011;18(5):577-583. doi:10.1038/nsmb.2037","ista":"Loose M, Fischer Friedrich E, Herold C, Kruse K, Schwille P. 2011. Min protein patterns emerge from rapid rebinding and membrane interaction of MinE. Nature Structural and Molecular Biology. 18(5), 577–583.","apa":"Loose, M., Fischer Friedrich, E., Herold, C., Kruse, K., & Schwille, P. (2011). Min protein patterns emerge from rapid rebinding and membrane interaction of MinE. Nature Structural and Molecular Biology. Nature Publishing Group. https://doi.org/10.1038/nsmb.2037","ieee":"M. Loose, E. Fischer Friedrich, C. Herold, K. Kruse, and P. Schwille, “Min protein patterns emerge from rapid rebinding and membrane interaction of MinE,” Nature Structural and Molecular Biology, vol. 18, no. 5. Nature Publishing Group, pp. 577–583, 2011."},"publication":"Nature Structural and Molecular Biology"},{"volume":40,"date_created":"2018-12-11T11:55:04Z","date_updated":"2021-01-12T06:54:31Z","author":[{"id":"462D4284-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7309-9724","first_name":"Martin","last_name":"Loose","full_name":"Martin Loose"},{"full_name":"Kruse, Karsten","last_name":"Kruse","first_name":"Karsten"},{"full_name":"Schwille, Petra ","first_name":"Petra","last_name":"Schwille"}],"publisher":"Annual Reviews","intvolume":" 40","status":"public","title":"Protein self-organization: Lessons from the min system","publication_status":"published","_id":"1986","year":"2011","extern":1,"publist_id":"5097","issue":"1","abstract":[{"text":"One of the most fundamental features of biological systems is probably their ability to self-organize in space and time on different scales. Despite many elaborate theoretical models of how molecular self-organization can come about, only a few experimental systems of biological origin have so far been rigorously described, due mostly to their inherent complexity. The most promising strategy of modern biophysics is thus to identify minimal biological systems showing self-organized emergent behavior. One of the best-understood examples of protein self-organization, which has recently been successfully reconstituted in vitro, is represented by the oscillations of the Min proteins in Escherichia coli. In this review, we summarize the current understanding of the mechanism of Min protein self-organization in vivo and in vitro. We discuss the potential of the Min oscillations to sense the geometry of the cell and suggest that spontaneous protein waves could be a general means of intracellular organization. We hypothesize that cooperative membrane binding and unbinding, e.g., as an energy-dependent switch, may act as an important regulatory mechanism for protein oscillations and pattern formation in the cell.","lang":"eng"}],"type":"journal_article","doi":"10.1146/annurev-biophys-042910-155332","date_published":"2011-06-09T00:00:00Z","page":"315 - 336","quality_controlled":0,"citation":{"chicago":"Loose, Martin, Karsten Kruse, and Petra Schwille. “Protein Self-Organization: Lessons from the Min System.” Annual Review of Biophysics. Annual Reviews, 2011. https://doi.org/10.1146/annurev-biophys-042910-155332.","short":"M. Loose, K. Kruse, P. Schwille, Annual Review of Biophysics 40 (2011) 315–336.","mla":"Loose, Martin, et al. “Protein Self-Organization: Lessons from the Min System.” Annual Review of Biophysics, vol. 40, no. 1, Annual Reviews, 2011, pp. 315–36, doi:10.1146/annurev-biophys-042910-155332.","ieee":"M. Loose, K. Kruse, and P. Schwille, “Protein self-organization: Lessons from the min system,” Annual Review of Biophysics, vol. 40, no. 1. Annual Reviews, pp. 315–336, 2011.","apa":"Loose, M., Kruse, K., & Schwille, P. (2011). Protein self-organization: Lessons from the min system. Annual Review of Biophysics. Annual Reviews. https://doi.org/10.1146/annurev-biophys-042910-155332","ista":"Loose M, Kruse K, Schwille P. 2011. Protein self-organization: Lessons from the min system. Annual Review of Biophysics. 40(1), 315–336.","ama":"Loose M, Kruse K, Schwille P. Protein self-organization: Lessons from the min system. Annual Review of Biophysics. 2011;40(1):315-336. doi:10.1146/annurev-biophys-042910-155332"},"publication":"Annual Review of Biophysics","day":"09","month":"06"},{"type":"journal_article","abstract":[{"text":"Many species have morphologically and genetically differentiated sex chromosomes, such as the XY pair of mammals. Y chromosomes are often highly degenerated and carry few functional genes, so that XY males have only one copy of most Xlinked genes (whereas females have two). As a result, chromosome-wide mechanisms of dosage compensation, such as the mammalian X-inactivation, often evolve to reestablish expression balance. A similar phenomenon is expected in femaleheterogametic species, where ZW females should suffer from imbalances due to W-chromosome degeneration. However, no global dosage compensation mechanisms have been detected in the two independent ZW systems that have been studied systematically (birds and silkworm), leading to the suggestion that lack of global dosage compensation may be a general feature of female-heterogametic species. However, analyses of other independently evolved ZW systems are required to test if this is the case. In this study, we use published genomic and expression data to test for the presence of global dosage compensation in Schistosoma mansoni, a trematode parasite that causes schistosomiasis in humans. We find that Z-linked expression is reduced relative to autosomal expression in females but not males, consistent with incomplete or localized dosage compensation. This gives further support to the theory that female-heterogametic species may not require global mechanisms of dosage compensation.","lang":"eng"}],"issue":"1","title":"Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite","status":"public","ddc":["570"],"intvolume":" 3","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"2072","file":[{"file_id":"6395","relation":"main_file","checksum":"7855c134436e4f6a13d63b6606d7e8dd","date_updated":"2020-07-14T12:45:27Z","date_created":"2019-05-10T07:41:28Z","access_level":"open_access","file_name":"2011_GBE_Vicoso.pdf","creator":"dernst","file_size":212547,"content_type":"application/pdf"}],"oa_version":"Published Version","day":"11","has_accepted_license":"1","page":"230 - 235","publication":"Genome Biology and Evolution","citation":{"ista":"Vicoso B, Bachtrog D. 2011. Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. Genome Biology and Evolution. 3(1), 230–235.","ieee":"B. Vicoso and D. Bachtrog, “Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite,” Genome Biology and Evolution, vol. 3, no. 1. Oxford University Press, pp. 230–235, 2011.","apa":"Vicoso, B., & Bachtrog, D. (2011). Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. Genome Biology and Evolution. Oxford University Press. https://doi.org/10.1093/gbe/evr010","ama":"Vicoso B, Bachtrog D. Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. Genome Biology and Evolution. 2011;3(1):230-235. doi:10.1093/gbe/evr010","chicago":"Vicoso, Beatriz, and Doris Bachtrog. “Lack of Global Dosage Compensation in Schistosoma Mansoni, a Female-Heterogametic Parasite.” Genome Biology and Evolution. Oxford University Press, 2011. https://doi.org/10.1093/gbe/evr010.","mla":"Vicoso, Beatriz, and Doris Bachtrog. “Lack of Global Dosage Compensation in Schistosoma Mansoni, a Female-Heterogametic Parasite.” Genome Biology and Evolution, vol. 3, no. 1, Oxford University Press, 2011, pp. 230–35, doi:10.1093/gbe/evr010.","short":"B. Vicoso, D. Bachtrog, Genome Biology and Evolution 3 (2011) 230–235."},"date_published":"2011-02-11T00:00:00Z","license":"https://creativecommons.org/licenses/by-nc/4.0/","extern":"1","file_date_updated":"2020-07-14T12:45:27Z","publist_id":"4966","publication_status":"published","publisher":"Oxford University Press","year":"2011","date_created":"2018-12-11T11:55:33Z","date_updated":"2021-01-12T06:55:08Z","volume":3,"author":[{"first_name":"Beatriz","last_name":"Vicoso","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4579-8306","full_name":"Vicoso, Beatriz"},{"first_name":"Doris","last_name":"Bachtrog","full_name":"Bachtrog, Doris"}],"month":"02","quality_controlled":"1","tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png","short":"CC BY-NC (4.0)"},"oa":1,"language":[{"iso":"eng"}],"doi":"10.1093/gbe/evr010"},{"date_published":"2011-07-01T00:00:00Z","doi":"10.1145/2010324.1964970","citation":{"ista":"Beeler T, Hahn F, Bradley D, Bickel B, Beardsley P, Gotsman C, Sumner R, Groß M. 2011. High-quality passive facial performance capture using anchor frames. ACM Transactions on Graphics. 30(4).","apa":"Beeler, T., Hahn, F., Bradley, D., Bickel, B., Beardsley, P., Gotsman, C., … Groß, M. (2011). High-quality passive facial performance capture using anchor frames. ACM Transactions on Graphics. ACM. https://doi.org/10.1145/2010324.1964970","ieee":"T. Beeler et al., “High-quality passive facial performance capture using anchor frames,” ACM Transactions on Graphics, vol. 30, no. 4. ACM, 2011.","ama":"Beeler T, Hahn F, Bradley D, et al. High-quality passive facial performance capture using anchor frames. ACM Transactions on Graphics. 2011;30(4). doi:10.1145/2010324.1964970","chicago":"Beeler, Thabo, Fabian Hahn, Derek Bradley, Bernd Bickel, Paul Beardsley, Craig Gotsman, Robert Sumner, and Markus Groß. “High-Quality Passive Facial Performance Capture Using Anchor Frames.” ACM Transactions on Graphics. ACM, 2011. https://doi.org/10.1145/2010324.1964970.","mla":"Beeler, Thabo, et al. “High-Quality Passive Facial Performance Capture Using Anchor Frames.” ACM Transactions on Graphics, vol. 30, no. 4, ACM, 2011, doi:10.1145/2010324.1964970.","short":"T. Beeler, F. Hahn, D. Bradley, B. Bickel, P. Beardsley, C. Gotsman, R. Sumner, M. Groß, ACM Transactions on Graphics 30 (2011)."},"publication":"ACM Transactions on Graphics","quality_controlled":0,"day":"01","month":"07","author":[{"full_name":"Beeler, Thabo","last_name":"Beeler","first_name":"Thabo"},{"full_name":"Hahn, Fabian","first_name":"Fabian","last_name":"Hahn"},{"first_name":"Derek","last_name":"Bradley","full_name":"Bradley, Derek J"},{"full_name":"Bernd Bickel","first_name":"Bernd","last_name":"Bickel","id":"49876194-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6511-9385"},{"full_name":"Beardsley, Paul A","last_name":"Beardsley","first_name":"Paul"},{"first_name":"Craig","last_name":"Gotsman","full_name":"Gotsman, Craig"},{"last_name":"Sumner","first_name":"Robert","full_name":"Sumner, Robert W"},{"full_name":"Groß, Markus S","last_name":"Groß","first_name":"Markus"}],"volume":30,"date_updated":"2021-01-12T06:55:17Z","date_created":"2018-12-11T11:55:42Z","year":"2011","_id":"2099","intvolume":" 30","publisher":"ACM","status":"public","title":"High-quality passive facial performance capture using anchor frames","publication_status":"published","issue":"4","publist_id":"4936","abstract":[{"text":"We present a new technique for passive and markerless facial performance capture based on anchor frames. Our method starts with high resolution per-frame geometry acquisition using state-of-theart stereo reconstruction, and proceeds to establish a single triangle mesh that is propagated through the entire performance. Leveraging the fact that facial performances often contain repetitive subsequences, we identify anchor frames as those which contain similar facial expressions to a manually chosen reference expression. Anchor frames are automatically computed over one or even multiple performances. We introduce a robust image-space tracking method that computes pixel matches directly from the reference frame to all anchor frames, and thereby to the remaining frames in the sequence via sequential matching. This allows us to propagate one reconstructed frame to an entire sequence in parallel, in contrast to previous sequential methods. Our anchored reconstruction approach also limits tracker drift and robustly handles occlusions and motion blur. The parallel tracking and mesh propagation offer low computation times. Our technique will even automatically match anchor frames across different sequences captured on different occasions, propagating a single mesh to all performances.","lang":"eng"}],"extern":1,"type":"journal_article"},{"extern":1,"publist_id":"4935","abstract":[{"lang":"eng","text":"This chapter presents a method for real-time animation of highly detailed facial expressions based on sparse motion captures data and a limited set of static example poses. The method for real-time animation of highly detailed facial expressions decomposes geometry into large-scale motion and fine-scale details, such as expression wrinkles. Both large- and fine-scale deformation algorithms run entirely on the GPU, and our implementation based on CUDA achieves an overall performance of about 30 fps. The face conveys the most relevant visual characteristics of human identity and expression. Hence, realistic facial animations or interactions with virtual avatars are important for storytelling and gameplay. However, current approaches are either computationally expensive, require very specialized capture hardware, or are extremely labor intensive. At runtime, given an arbitrary facial expression, the algorithm computes the skin strain from the relative distance between marker points and derives fine-scale corrections for the largescale deformation. During gameplay only the sparse set of marker-point positions is transmitted to the GPU. The face animation is entirely computed on the GPU where the resulting mesh can directly be used as input for the rendering stages. This data can be easily obtained by traditional capture hardware. The proposed in-game algorithm is fast. It also is easy to implement and maps well onto programmable GPUs."}],"type":"book_chapter","date_created":"2018-12-11T11:55:42Z","date_updated":"2021-01-12T06:55:17Z","author":[{"full_name":"Bernd Bickel","orcid":"0000-0001-6511-9385","id":"49876194-F248-11E8-B48F-1D18A9856A87","last_name":"Bickel","first_name":"Bernd"},{"last_name":"Lang","first_name":"Manuel","full_name":"Lang, Manuel"}],"publisher":"Science Direct","publication_status":"published","status":"public","title":"From sparse mocap to highly detailed facial animation","_id":"2098","year":"2011","day":"01","month":"01","doi":"10.1016/B978-0-12-384988-5.00027-9","date_published":"2011-01-01T00:00:00Z","page":"413 - 426","quality_controlled":0,"citation":{"short":"B. Bickel, M. Lang, in:, GPU Computing Gems Emerald Edition, Science Direct, 2011, pp. 413–426.","mla":"Bickel, Bernd, and Manuel Lang. “From Sparse Mocap to Highly Detailed Facial Animation.” GPU Computing Gems Emerald Edition, Science Direct, 2011, pp. 413–26, doi:10.1016/B978-0-12-384988-5.00027-9.","chicago":"Bickel, Bernd, and Manuel Lang. “From Sparse Mocap to Highly Detailed Facial Animation.” In GPU Computing Gems Emerald Edition, 413–26. Science Direct, 2011. https://doi.org/10.1016/B978-0-12-384988-5.00027-9.","ama":"Bickel B, Lang M. From sparse mocap to highly detailed facial animation. In: GPU Computing Gems Emerald Edition. Science Direct; 2011:413-426. doi:10.1016/B978-0-12-384988-5.00027-9","ieee":"B. Bickel and M. Lang, “From sparse mocap to highly detailed facial animation,” in GPU Computing Gems Emerald Edition, Science Direct, 2011, pp. 413–426.","apa":"Bickel, B., & Lang, M. (2011). From sparse mocap to highly detailed facial animation. In GPU Computing Gems Emerald Edition (pp. 413–426). Science Direct. https://doi.org/10.1016/B978-0-12-384988-5.00027-9","ista":"Bickel B, Lang M. 2011.From sparse mocap to highly detailed facial animation. In: GPU Computing Gems Emerald Edition. , 413–426."},"publication":"GPU Computing Gems Emerald Edition"},{"month":"12","day":"01","quality_controlled":0,"citation":{"apa":"Pfeil, J., Hildebrand, K., Gremzow, C., Bickel, B., & Alexa, M. (2011). Throwable panoramic ball camera. Presented at the SIGGRAPH Asia, ACM. https://doi.org/10.1145/2073370.2073373","ieee":"J. Pfeil, K. Hildebrand, C. Gremzow, B. Bickel, and M. Alexa, “Throwable panoramic ball camera,” presented at the SIGGRAPH Asia, 2011.","ista":"Pfeil J, Hildebrand K, Gremzow C, Bickel B, Alexa M. 2011. Throwable panoramic ball camera. SIGGRAPH Asia.","ama":"Pfeil J, Hildebrand K, Gremzow C, Bickel B, Alexa M. Throwable panoramic ball camera. In: ACM; 2011. doi:10.1145/2073370.2073373","chicago":"Pfeil, Jonas, Kristian Hildebrand, Carsten Gremzow, Bernd Bickel, and Marc Alexa. “Throwable Panoramic Ball Camera.” ACM, 2011. https://doi.org/10.1145/2073370.2073373.","short":"J. Pfeil, K. Hildebrand, C. Gremzow, B. Bickel, M. Alexa, in:, ACM, 2011.","mla":"Pfeil, Jonas, et al. Throwable Panoramic Ball Camera. ACM, 2011, doi:10.1145/2073370.2073373."},"date_published":"2011-12-01T00:00:00Z","doi":"10.1145/2073370.2073373","conference":{"name":"SIGGRAPH Asia"},"type":"conference","extern":1,"publist_id":"4934","abstract":[{"lang":"eng","text":"Acquiring panoramic images using stitching takes a lot of time and moving objects may cause ghosting. It is also difficult to obtain a full spherical panorama, because the downward picture cannot be captured while the camera is mounted on the tripod."}],"publisher":"ACM","status":"public","title":"Throwable panoramic ball camera","publication_status":"published","year":"2011","_id":"2100","date_created":"2018-12-11T11:55:43Z","date_updated":"2021-01-12T06:55:19Z","author":[{"first_name":"Jonas","last_name":"Pfeil","full_name":"Pfeil, Jonas"},{"full_name":"Hildebrand, Kristian","last_name":"Hildebrand","first_name":"Kristian"},{"full_name":"Gremzow, Carsten","first_name":"Carsten","last_name":"Gremzow"},{"full_name":"Bernd Bickel","id":"49876194-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6511-9385","first_name":"Bernd","last_name":"Bickel"},{"full_name":"Alexa, Marc","first_name":"Marc","last_name":"Alexa"}]},{"author":[{"full_name":"Jan Maas","first_name":"Jan","last_name":"Maas","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0845-1338"},{"last_name":"Van Neerven","first_name":"Jan","full_name":"Van Neerven, Jan"}],"date_created":"2018-12-11T11:55:48Z","date_updated":"2021-01-12T06:55:24Z","volume":80,"_id":"2116","acknowledgement":"The authors are supported by VIDI subsidy 639.032.201 (JM) and VICI subsidy 639.033.604 (JvN) of the Netherlands Organisation for Scientific Research (NWO). ","year":"2011","title":"Gradient estimates and domain identification for analytic Ornstein-Uhlenbeck operators","status":"public","publication_status":"published","publisher":"Birkhäuser","intvolume":" 80","abstract":[{"lang":"eng","text":"Let P be the Ornstein-Uhlenbeck semigroup associated with the stochastic Cauchy problem dU(t)=AU(t)dt+dWH(t), where A is the generator of a C 0-semigroup S on a Banach space E, H is a Hilbert subspace of E, and W H is an H-cylindrical Brownian motion. Assuming that S restricts to a C 0-semigroup on H, we obtain L p -bounds for D H P(t). We show that if P is analytic, then the invariance assumption is fulfilled. As an application we determine the L p -domain of the generator of P explicitly in the case where S restricts to a C 0-semigroup on H which is similar to an analytic contraction semigroup. The results are applied to the 1D stochastic heat equation driven by additive space-time white noise."}],"publist_id":"4918","extern":1,"type":"book_chapter","date_published":"2011-06-10T00:00:00Z","doi":"10.1007/978-3-0348-0075-4_24","publication":"Parabolic Problems","oa":1,"citation":{"chicago":"Maas, Jan, and Jan Van Neerven. “Gradient Estimates and Domain Identification for Analytic Ornstein-Uhlenbeck Operators.” In Parabolic Problems, 80:463–77. Birkhäuser, 2011. https://doi.org/10.1007/978-3-0348-0075-4_24.","mla":"Maas, Jan, and Jan Van Neerven. “Gradient Estimates and Domain Identification for Analytic Ornstein-Uhlenbeck Operators.” Parabolic Problems, vol. 80, Birkhäuser, 2011, pp. 463–77, doi:10.1007/978-3-0348-0075-4_24.","short":"J. Maas, J. Van Neerven, in:, Parabolic Problems, Birkhäuser, 2011, pp. 463–477.","ista":"Maas J, Van Neerven J. 2011.Gradient estimates and domain identification for analytic Ornstein-Uhlenbeck operators. In: Parabolic Problems. vol. 80, 463–477.","apa":"Maas, J., & Van Neerven, J. (2011). Gradient estimates and domain identification for analytic Ornstein-Uhlenbeck operators. In Parabolic Problems (Vol. 80, pp. 463–477). Birkhäuser. https://doi.org/10.1007/978-3-0348-0075-4_24","ieee":"J. Maas and J. Van Neerven, “Gradient estimates and domain identification for analytic Ornstein-Uhlenbeck operators,” in Parabolic Problems, vol. 80, Birkhäuser, 2011, pp. 463–477.","ama":"Maas J, Van Neerven J. Gradient estimates and domain identification for analytic Ornstein-Uhlenbeck operators. In: Parabolic Problems. Vol 80. Birkhäuser; 2011:463-477. doi:10.1007/978-3-0348-0075-4_24"},"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/0911.4336 "}],"quality_controlled":0,"page":"463 - 477","month":"06","day":"10"},{"status":"public","publication_status":"published","title":"Conical square functions and non-tangential maximal functions with respect to the Gaussian measure","publisher":"Universitat Autònoma de Barcelona, Departament de Matemàtique","intvolume":" 55","_id":"2122","year":"2011","acknowledgement":"The first named author is supported by Rubicon subsidy 680-50-0901 of the Netherlands Organisation for Scientific Research (NWO). The second named author is supported by VICI subsidy 639.033.604 of the Netherlands Organisation for Scientific Research (NWO","date_updated":"2021-01-12T06:55:26Z","date_created":"2018-12-11T11:55:50Z","volume":55,"author":[{"first_name":"Jan","last_name":"Maas","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0845-1338","full_name":"Jan Maas"},{"first_name":"Jan","last_name":"Van Neerven","full_name":"van Neerven, Jan M"},{"full_name":"Portal, Pierre","last_name":"Portal","first_name":"Pierre"}],"type":"journal_article","extern":1,"abstract":[{"text":"We study, in L1(R̃n; γ) with respect to the gaussian measure, non- tangential maximal functions and conical square functions associ- ated with the Ornstein-Uhlenbeck operator by developing a set of techniques which allow us, to some extent, to compensate for the non-doubling character of the gaussian measure. The main result asserts that conical square functions can be controlled in L1-norm by non-tangential maximal functions. Along the way we prove a change of aperture result for the latter. This complements recent results on gaussian Hardy spaces due to Mauceri and Meda.","lang":"eng"}],"issue":"2","publist_id":"4910","quality_controlled":0,"page":"313 - 341","publication":"Publicacions Matemàtiques","citation":{"ama":"Maas J, Van Neerven J, Portal P. Conical square functions and non-tangential maximal functions with respect to the Gaussian measure. Publicacions Matemàtiques. 2011;55(2):313-341. doi:10.5565/PUBLMAT_55211_03 ","ista":"Maas J, Van Neerven J, Portal P. 2011. Conical square functions and non-tangential maximal functions with respect to the Gaussian measure. Publicacions Matemàtiques. 55(2), 313–341.","ieee":"J. Maas, J. Van Neerven, and P. Portal, “Conical square functions and non-tangential maximal functions with respect to the Gaussian measure,” Publicacions Matemàtiques, vol. 55, no. 2. Universitat Autònoma de Barcelona, Departament de Matemàtique, pp. 313–341, 2011.","apa":"Maas, J., Van Neerven, J., & Portal, P. (2011). Conical square functions and non-tangential maximal functions with respect to the Gaussian measure. Publicacions Matemàtiques. Universitat Autònoma de Barcelona, Departament de Matemàtique. https://doi.org/10.5565/PUBLMAT_55211_03 ","mla":"Maas, Jan, et al. “Conical Square Functions and Non-Tangential Maximal Functions with Respect to the Gaussian Measure.” Publicacions Matemàtiques, vol. 55, no. 2, Universitat Autònoma de Barcelona, Departament de Matemàtique, 2011, pp. 313–41, doi:10.5565/PUBLMAT_55211_03 .","short":"J. Maas, J. Van Neerven, P. Portal, Publicacions Matemàtiques 55 (2011) 313–341.","chicago":"Maas, Jan, Jan Van Neerven, and Pierre Portal. “Conical Square Functions and Non-Tangential Maximal Functions with Respect to the Gaussian Measure.” Publicacions Matemàtiques. Universitat Autònoma de Barcelona, Departament de Matemàtique, 2011. https://doi.org/10.5565/PUBLMAT_55211_03 ."},"main_file_link":[{"url":"http://arxiv.org/abs/1003.4092","open_access":"1"}],"oa":1,"doi":"10.5565/PUBLMAT_55211_03\t ","date_published":"2011-07-01T00:00:00Z","month":"07","day":"01"},{"month":"01","language":[{"iso":"eng"}],"doi":"10.1007/s00028-010-0096-5","oa":1,"main_file_link":[{"url":"http://arxiv.org/abs/1005.0998","open_access":"1"}],"extern":"1","publist_id":"4911","date_created":"2018-12-11T11:55:51Z","date_updated":"2021-11-16T08:05:46Z","volume":11,"author":[{"last_name":"Clément","first_name":"Philippe","full_name":"Clément, Philippe"},{"id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0845-1338","first_name":"Jan","last_name":"Maas","full_name":"Maas, Jan"}],"related_material":{"link":[{"url":"https://doi.org/10.1007/s00028-012-0173-z","relation":"erratum"}]},"publication_status":"published","publisher":"Birkhäuser","year":"2011","acknowledgement":"The second named author is supported by Rubicon subsidy 680-50-0901 of the Netherlands Organisation for Scientific Research (NWO).","day":"21","article_processing_charge":"No","date_published":"2011-01-21T00:00:00Z","page":"405 - 427","publication":"Journal of Evolution Equations","citation":{"short":"P. Clément, J. Maas, Journal of Evolution Equations 11 (2011) 405–427.","mla":"Clément, Philippe, and Jan Maas. “A Trotter Product Formula for Gradient Flows in Metric Spaces.” Journal of Evolution Equations, vol. 11, no. 2, Birkhäuser, 2011, pp. 405–27, doi:10.1007/s00028-010-0096-5.","chicago":"Clément, Philippe, and Jan Maas. “A Trotter Product Formula for Gradient Flows in Metric Spaces.” Journal of Evolution Equations. Birkhäuser, 2011. https://doi.org/10.1007/s00028-010-0096-5.","ama":"Clément P, Maas J. A Trotter product formula for gradient flows in metric spaces. Journal of Evolution Equations. 2011;11(2):405-427. doi:10.1007/s00028-010-0096-5","ieee":"P. Clément and J. Maas, “A Trotter product formula for gradient flows in metric spaces,” Journal of Evolution Equations, vol. 11, no. 2. Birkhäuser, pp. 405–427, 2011.","apa":"Clément, P., & Maas, J. (2011). A Trotter product formula for gradient flows in metric spaces. Journal of Evolution Equations. Birkhäuser. https://doi.org/10.1007/s00028-010-0096-5","ista":"Clément P, Maas J. 2011. A Trotter product formula for gradient flows in metric spaces. Journal of Evolution Equations. 11(2), 405–427."},"abstract":[{"lang":"eng","text":"We prove a Trotter product formula for gradient flows in metric spaces. This result is applied to establish convergence in the L 2-Wasserstein metric of the splitting method for some Fokker-Planck equations and porous medium type equations perturbed by a potential."}],"issue":"2","type":"journal_article","oa_version":"None","status":"public","title":"A Trotter product formula for gradient flows in metric spaces","intvolume":" 11","_id":"2123","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9"},{"date_published":"2011-03-04T00:00:00Z","doi":"10.1016/j.jfa.2011.06.009 ","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1102.5238"}],"oa":1,"citation":{"chicago":"Maas, Jan. “Gradient Flows of the Entropy for Finite Markov Chains.” Journal of Functional Analysis. Academic Press, 2011. https://doi.org/10.1016/j.jfa.2011.06.009 .","short":"J. Maas, Journal of Functional Analysis 261 (2011) 2250–2292.","mla":"Maas, Jan. “Gradient Flows of the Entropy for Finite Markov Chains.” Journal of Functional Analysis, vol. 261, no. 8, Academic Press, 2011, pp. 2250–92, doi:10.1016/j.jfa.2011.06.009 .","ieee":"J. Maas, “Gradient flows of the entropy for finite Markov chains,” Journal of Functional Analysis, vol. 261, no. 8. Academic Press, pp. 2250–2292, 2011.","apa":"Maas, J. (2011). Gradient flows of the entropy for finite Markov chains. Journal of Functional Analysis. Academic Press. https://doi.org/10.1016/j.jfa.2011.06.009 ","ista":"Maas J. 2011. Gradient flows of the entropy for finite Markov chains. Journal of Functional Analysis. 261(8), 2250–2292.","ama":"Maas J. Gradient flows of the entropy for finite Markov chains. Journal of Functional Analysis. 2011;261(8):2250-2292. doi:10.1016/j.jfa.2011.06.009 "},"publication":"Journal of Functional Analysis","page":"2250 - 2292","quality_controlled":0,"day":"04","month":"03","author":[{"first_name":"Jan","last_name":"Maas","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0845-1338","full_name":"Jan Maas"}],"volume":261,"date_updated":"2021-01-12T06:55:28Z","date_created":"2018-12-11T11:55:51Z","_id":"2126","acknowledgement":"Supported by Rubicon subsidy 680-50-0901 of the Netherlands Organisation for Scientific Research (NWO)","year":"2011","intvolume":" 261","publisher":"Academic Press","publication_status":"published","title":"Gradient flows of the entropy for finite Markov chains","status":"public","issue":"8","publist_id":"4909","abstract":[{"text":"Let K be an irreducible and reversible Markov kernel on a finite set X. We construct a metric W on the set of probability measures on X and show that with respect to this metric, the law of the continuous time Markov chain evolves as the gradient flow of the entropy. This result is a discrete counterpart of the Wasserstein gradient flow interpretation of the heat flow in Rn by Jordan, Kinderlehrer and Otto (1998). The metric W is similar to, but different from, the L2-Wasserstein metric, and is defined via a discrete variant of the Benamou–Brenier formula.\n","lang":"eng"}],"extern":1,"type":"journal_article"},{"type":"preprint","extern":1,"publist_id":"4886","abstract":[{"lang":"eng","text":"A (diatomic) shape resonance is a metastable state of a pair of colliding atoms quasi-bound by the centrifugal barrier imposed by the angular momentum involved in the collision. The temporary trapping of the atoms' scattering wavefunction corresponds to an enhanced atom pair density at low interatomic separations. This leads to larger overlap of the wavefunctions involved in a molecule formation process such as photoassociation, rendering the process more efficient. However, for an ensemble of atoms, the atom pair density will only be enhanced if the energy of the resonance comes close to the temperature of the atomic ensemble. Herein we explore the possibility of controlling the energy of a shape resonance by shifting it toward the temperature of atoms confined in a trap. The shifts are imparted by the interaction of non-resonant light with the anisotropic polarizability of the atom pair, which affects both the centrifugal barrier and the pair's rotational and vibrational levels. We find that at laser intensities of up to 5×109 W/cm2 the pair density is increased by one order of magnitude for 87Rb atoms at 100μK and by two orders of magnitude for 88Sr atoms at 20μK."}],"publisher":"ArXiv","publication_status":"published","title":"Controlling a diatomic shape resonance with non-resonant light","status":"public","_id":"2138","acknowledgement":"Financial support from the Deutsche Forschungsgemeinschaft (Grant No. KO 2301/2), by the Spanish project FIS2008-02380 (MICINN) as well as the Grants FQM-2445 and FQM-4643 (Junta de Andaluc´ıa), Campus de Excelencia Internacional Proyecto GENIL CEB09-0010","year":"2011","date_updated":"2021-01-12T06:55:32Z","date_created":"2018-12-11T11:55:55Z","author":[{"first_name":"Ruzin","last_name":"Ağanoğlu","full_name":"Ağanoğlu, Ruzin"},{"full_name":"Mikhail Lemeshko","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6990-7802","first_name":"Mikhail","last_name":"Lemeshko"},{"full_name":"Friedrich, Břetislav","first_name":"Břetislav","last_name":"Friedrich"},{"full_name":"González-Férez, Rosario","last_name":"González Férez","first_name":"Rosario"},{"full_name":"Koch, Christiane P","last_name":"Koch","first_name":"Christiane"}],"day":"04","month":"05","quality_controlled":0,"main_file_link":[{"url":"http://arxiv.org/abs/1105.0761","open_access":"1"}],"oa":1,"citation":{"chicago":"Ağanoğlu, Ruzin, Mikhail Lemeshko, Břetislav Friedrich, Rosario González Férez, and Christiane Koch. “Controlling a Diatomic Shape Resonance with Non-Resonant Light.” Unknown. ArXiv, 2011.","short":"R. Ağanoğlu, M. Lemeshko, B. Friedrich, R. González Férez, C. Koch, Unknown (2011).","mla":"Ağanoğlu, Ruzin, et al. “Controlling a Diatomic Shape Resonance with Non-Resonant Light.” Unknown, ArXiv, 2011.","apa":"Ağanoğlu, R., Lemeshko, M., Friedrich, B., González Férez, R., & Koch, C. (2011). Controlling a diatomic shape resonance with non-resonant light. Unknown. ArXiv.","ieee":"R. Ağanoğlu, M. Lemeshko, B. Friedrich, R. González Férez, and C. Koch, “Controlling a diatomic shape resonance with non-resonant light,” Unknown. ArXiv, 2011.","ista":"Ağanoğlu R, Lemeshko M, Friedrich B, González Férez R, Koch C. 2011. Controlling a diatomic shape resonance with non-resonant light. Unknown, .","ama":"Ağanoğlu R, Lemeshko M, Friedrich B, González Férez R, Koch C. Controlling a diatomic shape resonance with non-resonant light. Unknown. 2011."},"publication":"Unknown","date_published":"2011-05-04T00:00:00Z"},{"quality_controlled":0,"publication":"New Journal of Physics","oa":1,"citation":{"mla":"Lemeshko, Mikhail, et al. “Supersymmetry Identifies Molecular Stark States Whose Eigenproperties Can Be Obtained Analytically.” New Journal of Physics, vol. 13, IOP Publishing Ltd., 2011, doi:10.1088/1367-2630/13/6/063036.","short":"M. Lemeshko, M. Mustafa, S. Kais, B. Friedrich, New Journal of Physics 13 (2011).","chicago":"Lemeshko, Mikhail, Mustafa Mustafa, Sabre Kais, and Břetislav Friedrich. “Supersymmetry Identifies Molecular Stark States Whose Eigenproperties Can Be Obtained Analytically.” New Journal of Physics. IOP Publishing Ltd., 2011. https://doi.org/10.1088/1367-2630/13/6/063036.","ama":"Lemeshko M, Mustafa M, Kais S, Friedrich B. Supersymmetry identifies molecular Stark states whose eigenproperties can be obtained analytically. New Journal of Physics. 2011;13. doi:10.1088/1367-2630/13/6/063036","ista":"Lemeshko M, Mustafa M, Kais S, Friedrich B. 2011. Supersymmetry identifies molecular Stark states whose eigenproperties can be obtained analytically. New Journal of Physics. 13.","apa":"Lemeshko, M., Mustafa, M., Kais, S., & Friedrich, B. (2011). Supersymmetry identifies molecular Stark states whose eigenproperties can be obtained analytically. New Journal of Physics. IOP Publishing Ltd. https://doi.org/10.1088/1367-2630/13/6/063036","ieee":"M. Lemeshko, M. Mustafa, S. Kais, and B. Friedrich, “Supersymmetry identifies molecular Stark states whose eigenproperties can be obtained analytically,” New Journal of Physics, vol. 13. IOP Publishing Ltd., 2011."},"main_file_link":[{"url":"http://arxiv.org/abs/1106.4402 ","open_access":"1"}],"date_published":"2011-06-20T00:00:00Z","doi":"10.1088/1367-2630/13/6/063036","day":"20","month":"06","title":"Supersymmetry identifies molecular Stark states whose eigenproperties can be obtained analytically","status":"public","publication_status":"published","publisher":"IOP Publishing Ltd.","intvolume":" 13","year":"2011","_id":"2200","acknowledgement":"SK thanks the ARO for financial support","date_updated":"2021-01-12T06:55:57Z","date_created":"2018-12-11T11:56:17Z","volume":13,"author":[{"full_name":"Mikhail Lemeshko","first_name":"Mikhail","last_name":"Lemeshko","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6990-7802"},{"full_name":"Mustafa, Mustafa K","last_name":"Mustafa","first_name":"Mustafa"},{"full_name":"Kais, Sabre","last_name":"Kais","first_name":"Sabre"},{"first_name":"Břetislav","last_name":"Friedrich","full_name":"Friedrich, Břetislav"}],"type":"journal_article","extern":1,"abstract":[{"text":"We made use of supersymmetric (SUSY) quantum mechanics to find the condition under which the Stark effect problem for a polar and polarizable closed-shell diatomic molecule subjected to collinear electrostatic and nonresonant radiative fields becomes exactly solvable. The condition Δω = ω2/4(m+1)2 connects values of the dimensionless parameters ω and Δω that characterize the strengths of the permanent and induced dipole interactions of the molecule with the respective fields. The exact solutions are obtained for the \\J̃ = m, m; ω, Δω) family of 'stretched' states. The field-free and strong-field limits of the combined-fields problem were found to exhibit supersymmetry and shape invariance, which is indeed the reason why they are analytically solvable. By making use of the analytic form of the \\J̃ = m,m; ω, Δω) wavefunctions, we obtained simple formulae for the expectation values of the space-fixed electric dipole moment, the alignment cosine and the angular momentum squared, and derived a 'sum rule' that combines the above expectation values into a formula for the eigenenergy. The analytic expressions for the characteristics of the strongly oriented and aligned states provide direct access to the values of the interaction parameters required for creating such states in the laboratory.","lang":"eng"}],"publist_id":"4774"},{"volume":83,"date_created":"2018-12-11T11:56:17Z","date_updated":"2021-01-12T06:55:56Z","author":[{"last_name":"Lemeshko","first_name":"Mikhail","orcid":"0000-0002-6990-7802","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","full_name":"Mikhail Lemeshko"},{"first_name":"Mustafa","last_name":"Mustafa","full_name":"Mustafa, Mustafa K"},{"first_name":"Sabre","last_name":"Kais","full_name":"Kais, Sabre"},{"full_name":"Friedrich, Břetislav","first_name":"Břetislav","last_name":"Friedrich"}],"publisher":"American Physical Society","intvolume":" 83","title":"Supersymmetric factorization yields exact solutions to the molecular Stark-effect problem for "stretched" states","status":"public","publication_status":"published","_id":"2199","acknowledgement":"ARO ","year":"2011","extern":1,"publist_id":"4776","issue":"4","abstract":[{"text":"By invoking supersymmetry, we found a condition under which the Stark-effect problem for a polar and polarizable molecule subject to nonresonant electric fields becomes exactly solvable for the family of stretched states. The analytic expressions for the wave function and eigenenergy and other expectation values allow one to readily reverse-engineer the problem of finding the values of the interaction parameters required for creating quantum states with preordained characteristics. The method also allows the construction of families of isospectral potentials, realizable with combined fields.","lang":"eng"}],"type":"journal_article","doi":"10.1103/PhysRevA.83.043415","date_published":"2011-04-25T00:00:00Z","quality_controlled":0,"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1105.5262"}],"oa":1,"citation":{"chicago":"Lemeshko, Mikhail, Mustafa Mustafa, Sabre Kais, and Břetislav Friedrich. “Supersymmetric Factorization Yields Exact Solutions to the Molecular Stark-Effect Problem for "Stretched" States.” Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society, 2011. https://doi.org/10.1103/PhysRevA.83.043415.","short":"M. Lemeshko, M. Mustafa, S. Kais, B. Friedrich, Physical Review A - Atomic, Molecular, and Optical Physics 83 (2011).","mla":"Lemeshko, Mikhail, et al. “Supersymmetric Factorization Yields Exact Solutions to the Molecular Stark-Effect Problem for "Stretched" States.” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 83, no. 4, American Physical Society, 2011, doi:10.1103/PhysRevA.83.043415.","apa":"Lemeshko, M., Mustafa, M., Kais, S., & Friedrich, B. (2011). Supersymmetric factorization yields exact solutions to the molecular Stark-effect problem for "stretched" states. Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society. https://doi.org/10.1103/PhysRevA.83.043415","ieee":"M. Lemeshko, M. Mustafa, S. Kais, and B. Friedrich, “Supersymmetric factorization yields exact solutions to the molecular Stark-effect problem for "stretched" states,” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 83, no. 4. American Physical Society, 2011.","ista":"Lemeshko M, Mustafa M, Kais S, Friedrich B. 2011. Supersymmetric factorization yields exact solutions to the molecular Stark-effect problem for "stretched" states. Physical Review A - Atomic, Molecular, and Optical Physics. 83(4).","ama":"Lemeshko M, Mustafa M, Kais S, Friedrich B. Supersymmetric factorization yields exact solutions to the molecular Stark-effect problem for "stretched" states. Physical Review A - Atomic, Molecular, and Optical Physics. 2011;83(4). doi:10.1103/PhysRevA.83.043415"},"publication":"Physical Review A - Atomic, Molecular, and Optical Physics","month":"04","day":"25"},{"date_published":"2011-05-27T00:00:00Z","doi":"10.1103/PhysRevA.83.051402","quality_controlled":0,"publication":"Physical Review A - Atomic, Molecular, and Optical Physics","citation":{"short":"M. Lemeshko, Physical Review A - Atomic, Molecular, and Optical Physics 83 (2011).","mla":"Lemeshko, Mikhail. “Shaping Interactions between Polar Molecules with Far-off-Resonant Light.” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 83, no. 5, American Physical Society, 2011, doi:10.1103/PhysRevA.83.051402.","chicago":"Lemeshko, Mikhail. “Shaping Interactions between Polar Molecules with Far-off-Resonant Light.” Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society, 2011. https://doi.org/10.1103/PhysRevA.83.051402.","ama":"Lemeshko M. Shaping interactions between polar molecules with far-off-resonant light. Physical Review A - Atomic, Molecular, and Optical Physics. 2011;83(5). doi:10.1103/PhysRevA.83.051402","ieee":"M. Lemeshko, “Shaping interactions between polar molecules with far-off-resonant light,” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 83, no. 5. American Physical Society, 2011.","apa":"Lemeshko, M. (2011). Shaping interactions between polar molecules with far-off-resonant light. Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society. https://doi.org/10.1103/PhysRevA.83.051402","ista":"Lemeshko M. 2011. Shaping interactions between polar molecules with far-off-resonant light. Physical Review A - Atomic, Molecular, and Optical Physics. 83(5)."},"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1104.1046"}],"oa":1,"day":"27","month":"05","date_created":"2018-12-11T11:56:17Z","date_updated":"2021-01-12T06:55:55Z","volume":83,"author":[{"full_name":"Mikhail Lemeshko","first_name":"Mikhail","last_name":"Lemeshko","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6990-7802"}],"status":"public","publication_status":"published","title":"Shaping interactions between polar molecules with far-off-resonant light","intvolume":" 83","publisher":"American Physical Society","_id":"2198","year":"2011","extern":1,"abstract":[{"text":"We show that dressing polar molecules with a far-off-resonant optical field leads to new types of intermolecular potentials, which undergo a crossover from the inverse power to oscillating behavior depending on the intermolecular distance, and whose parameters can be tuned by varying the laser intensity and wavelength. We present analytic expressions for the potential energy surfaces, thereby providing direct access to the parameters of an optical field required to design intermolecular interactions experimentally.","lang":"eng"}],"publist_id":"4775","issue":"5","type":"journal_article"},{"day":"01","month":"01","publication":"Cell","citation":{"ama":"Novarino G, Akizu N, Gleeson J. Modeling human disease in humans: The ciliopathies. Cell. 2011;147(1):70-79. doi:10.1016/j.cell.2011.09.014","apa":"Novarino, G., Akizu, N., & Gleeson, J. (2011). Modeling human disease in humans: The ciliopathies. Cell. Cell Press. https://doi.org/10.1016/j.cell.2011.09.014","ieee":"G. Novarino, N. Akizu, and J. Gleeson, “Modeling human disease in humans: The ciliopathies,” Cell, vol. 147, no. 1. Cell Press, pp. 70–79, 2011.","ista":"Novarino G, Akizu N, Gleeson J. 2011. Modeling human disease in humans: The ciliopathies. Cell. 147(1), 70–79.","short":"G. Novarino, N. Akizu, J. Gleeson, Cell 147 (2011) 70–79.","mla":"Novarino, Gaia, et al. “Modeling Human Disease in Humans: The Ciliopathies.” Cell, vol. 147, no. 1, Cell Press, 2011, pp. 70–79, doi:10.1016/j.cell.2011.09.014.","chicago":"Novarino, Gaia, Naiara Akizu, and Joseph Gleeson. “Modeling Human Disease in Humans: The Ciliopathies.” Cell. Cell Press, 2011. https://doi.org/10.1016/j.cell.2011.09.014."},"quality_controlled":0,"page":"70 - 79","doi":"10.1016/j.cell.2011.09.014","date_published":"2011-01-01T00:00:00Z","type":"review","abstract":[{"text":"Soon, the genetic basis of most human Mendelian diseases will be solved. The next challenge will be to leverage this information to uncover basic mechanisms of disease and develop new therapies. To understand how this transformation is already beginning to unfold, we focus on the ciliopathies, a class of multi-organ diseases caused by disruption of the primary cilium. Through a convergence of data involving mutant gene discovery, proteomics, and cell biology, more than a dozen phenotypically distinguishable conditions are now united as ciliopathies. Sitting at the interface between simple and complex genetic conditions, these diseases provide clues to the future direction of human genetics.","lang":"eng"}],"publist_id":"4615","issue":"1","extern":1,"year":"2011","_id":"2312","title":"Modeling human disease in humans: The ciliopathies","publication_status":"published","status":"public","intvolume":" 147","publisher":"Cell Press","author":[{"last_name":"Novarino","first_name":"Gaia","orcid":"0000-0002-7673-7178","id":"3E57A680-F248-11E8-B48F-1D18A9856A87","full_name":"Gaia Novarino"},{"last_name":"Akizu","first_name":"Naiara","full_name":"Akizu, Naiara"},{"first_name":"Joseph","last_name":"Gleeson","full_name":"Gleeson, Joseph G"}],"date_updated":"2019-04-26T07:22:10Z","date_created":"2018-12-11T11:56:55Z","volume":147},{"page":"21 - 32","quality_controlled":0,"citation":{"ista":"Frank R, Lieb É, Seiringer R, Thomas L. 2011. Binding, stability, and non-binding of multi-polaron systems. QMath: Mathematical Results in Quantum Physics, 21–32.","ieee":"R. Frank, É. Lieb, R. Seiringer, and L. Thomas, “Binding, stability, and non-binding of multi-polaron systems,” presented at the QMath: Mathematical Results in Quantum Physics, 2011, pp. 21–32.","apa":"Frank, R., Lieb, É., Seiringer, R., & Thomas, L. (2011). Binding, stability, and non-binding of multi-polaron systems (pp. 21–32). Presented at the QMath: Mathematical Results in Quantum Physics, World Scientific Publishing. https://doi.org/10.1142/9789814350365_0002","ama":"Frank R, Lieb É, Seiringer R, Thomas L. Binding, stability, and non-binding of multi-polaron systems. In: World Scientific Publishing; 2011:21-32. doi:10.1142/9789814350365_0002","chicago":"Frank, Rupert, Élliott Lieb, Robert Seiringer, and Lawrence Thomas. “Binding, Stability, and Non-Binding of Multi-Polaron Systems,” 21–32. World Scientific Publishing, 2011. https://doi.org/10.1142/9789814350365_0002.","mla":"Frank, Rupert, et al. Binding, Stability, and Non-Binding of Multi-Polaron Systems. World Scientific Publishing, 2011, pp. 21–32, doi:10.1142/9789814350365_0002.","short":"R. Frank, É. Lieb, R. Seiringer, L. Thomas, in:, World Scientific Publishing, 2011, pp. 21–32."},"oa":1,"main_file_link":[{"url":"http://arxiv.org/abs/1010.0737","open_access":"1"}],"date_published":"2011-05-26T00:00:00Z","doi":"10.1142/9789814350365_0002","conference":{"name":"QMath: Mathematical Results in Quantum Physics"},"month":"05","day":"26","publisher":"World Scientific Publishing","title":"Binding, stability, and non-binding of multi-polaron systems","publication_status":"published","status":"public","year":"2011","_id":"2320","date_created":"2018-12-11T11:56:58Z","date_updated":"2021-01-12T06:56:45Z","author":[{"full_name":"Frank, Rupert L","last_name":"Frank","first_name":"Rupert"},{"full_name":"Lieb, Élliott H","last_name":"Lieb","first_name":"Élliott"},{"full_name":"Robert Seiringer","last_name":"Seiringer","first_name":"Robert","orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Thomas, Lawrence E","last_name":"Thomas","first_name":"Lawrence"}],"type":"conference","extern":1,"publist_id":"4607","abstract":[{"lang":"eng","text":"The binding of polarons, or its absence, is an old and subtle topic. After defining the model we state some recent theorems of ours. First, the transition from many-body collapse to the existence of a thermodynamic limit for N polarons occurs precisely at U = 2α, where U is the electronic Coulomb repulsion and α is the polaron coupling constant. Second, if U is large enough, there is no multi-polaron binding of any kind. We also discuss the Pekar-Tomasevich approximation to the ground state energy, which is valid for large α. Finally, we derive exact results, not reported before, about the one-dimensional toy model introduced by E. P. Gross."}]},{"month":"03","day":"31","page":"39 - 44","quality_controlled":0,"citation":{"chicago":"Frank, Rupert, Ari Laptev, and Robert Seiringer. “ A Sharp Bound on Eigenvalues of Schrödinger Operators on the Halfline with Complex-Valued Potentials,” 214:39–44. Springer, 2011. https://doi.org/10.1007/978-3-7643-9994-8_3.","mla":"Frank, Rupert, et al. A Sharp Bound on Eigenvalues of Schrödinger Operators on the Halfline with Complex-Valued Potentials. Vol. 214, Springer, 2011, pp. 39–44, doi:10.1007/978-3-7643-9994-8_3.","short":"R. Frank, A. Laptev, R. Seiringer, in:, Springer, 2011, pp. 39–44.","ista":"Frank R, Laptev A, Seiringer R. 2011. A sharp bound on eigenvalues of Schrödinger operators on the halfline with complex-valued potentials. OTAMP: Operator Theory, Analysis and Mathematical Physics, Operator Theory: Advances and Applications, vol. 214, 39–44.","apa":"Frank, R., Laptev, A., & Seiringer, R. (2011). A sharp bound on eigenvalues of Schrödinger operators on the halfline with complex-valued potentials (Vol. 214, pp. 39–44). Presented at the OTAMP: Operator Theory, Analysis and Mathematical Physics, Springer. https://doi.org/10.1007/978-3-7643-9994-8_3","ieee":"R. Frank, A. Laptev, and R. Seiringer, “ A sharp bound on eigenvalues of Schrödinger operators on the halfline with complex-valued potentials,” presented at the OTAMP: Operator Theory, Analysis and Mathematical Physics, 2011, vol. 214, pp. 39–44.","ama":"Frank R, Laptev A, Seiringer R. A sharp bound on eigenvalues of Schrödinger operators on the halfline with complex-valued potentials. In: Vol 214. Springer; 2011:39-44. doi:10.1007/978-3-7643-9994-8_3"},"oa":1,"main_file_link":[{"url":"http://arxiv.org/abs/0903.2053","open_access":"1"}],"date_published":"2011-03-31T00:00:00Z","doi":"10.1007/978-3-7643-9994-8_3","conference":{"name":"OTAMP: Operator Theory, Analysis and Mathematical Physics"},"alternative_title":["Operator Theory: Advances and Applications"],"type":"conference","extern":1,"publist_id":"4606","abstract":[{"text":"We derive a sharp bound on the location of non-positive eigenvalues of Schrödinger operators on the half-line with complex-valued potentials.","lang":"eng"}],"publisher":"Springer","intvolume":" 214","publication_status":"published","title":" A sharp bound on eigenvalues of Schrödinger operators on the halfline with complex-valued potentials","status":"public","year":"2011","_id":"2321","volume":214,"date_created":"2018-12-11T11:56:59Z","date_updated":"2021-01-12T06:56:46Z","author":[{"last_name":"Frank","first_name":"Rupert","full_name":"Frank, Rupert L"},{"full_name":"Laptev, Ari","first_name":"Ari","last_name":"Laptev"},{"orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","last_name":"Seiringer","first_name":"Robert","full_name":"Robert Seiringer"}]}]