[{"issue":"12","volume":108,"publication_status":"published","publication_identifier":{"issn":["2469-9950"],"eissn":["2469-9969"]},"language":[{"iso":"eng"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2210.06310"}],"scopus_import":"1","intvolume":" 108","month":"09","abstract":[{"lang":"eng","text":"The development of two-dimensional materials has resulted in a diverse range of novel, high-quality compounds with increasing complexity. A key requirement for a comprehensive quantitative theory is the accurate determination of these materials' band structure parameters. However, this task is challenging due to the intricate band structures and the indirect nature of experimental probes. In this work, we introduce a general framework to derive band structure parameters from experimental data using deep neural networks. We applied our method to the penetration field capacitance measurement of trilayer graphene, an effective probe of its density of states. First, we demonstrate that a trained deep network gives accurate predictions for the penetration field capacitance as a function of tight-binding parameters. Next, we use the fast and accurate predictions from the trained network to automatically determine tight-binding parameters directly from experimental data, with extracted parameters being in a good agreement with values in the literature. We conclude by discussing potential applications of our method to other materials and experimental techniques beyond penetration field capacitance."}],"oa_version":"Preprint","department":[{"_id":"MaSe"},{"_id":"ChLa"},{"_id":"MiLe"}],"date_updated":"2023-09-20T09:38:24Z","article_type":"original","type":"journal_article","status":"public","_id":"14320","date_created":"2023-09-12T07:12:12Z","date_published":"2023-09-15T00:00:00Z","doi":"10.1103/physrevb.108.125411","year":"2023","publication":"Physical Review B","day":"15","oa":1,"quality_controlled":"1","publisher":"American Physical Society","acknowledgement":"A.F.Y. acknowledges primary support from the Department of Energy under award DE-SC0020043, and additional support from the Gordon and Betty Moore Foundation under award GBMF9471 for group operations.","article_processing_charge":"No","external_id":{"arxiv":["2210.06310"]},"author":[{"id":"13C09E74-18D9-11E9-8878-32CFE5697425","first_name":"Paul M","last_name":"Henderson","orcid":"0000-0002-5198-7445","full_name":"Henderson, Paul M"},{"id":"4AF46FD6-F248-11E8-B48F-1D18A9856A87","first_name":"Areg","last_name":"Ghazaryan","full_name":"Ghazaryan, Areg","orcid":"0000-0001-9666-3543"},{"first_name":"Alexander A.","full_name":"Zibrov, Alexander A.","last_name":"Zibrov"},{"full_name":"Young, Andrea F.","last_name":"Young","first_name":"Andrea F."},{"id":"47809E7E-F248-11E8-B48F-1D18A9856A87","first_name":"Maksym","orcid":"0000-0002-2399-5827","full_name":"Serbyn, Maksym","last_name":"Serbyn"}],"title":"Deep learning extraction of band structure parameters from density of states: A case study on trilayer graphene","citation":{"apa":"Henderson, P. M., Ghazaryan, A., Zibrov, A. A., Young, A. F., & Serbyn, M. (2023). Deep learning extraction of band structure parameters from density of states: A case study on trilayer graphene. Physical Review B. American Physical Society. https://doi.org/10.1103/physrevb.108.125411","ama":"Henderson PM, Ghazaryan A, Zibrov AA, Young AF, Serbyn M. Deep learning extraction of band structure parameters from density of states: A case study on trilayer graphene. Physical Review B. 2023;108(12). doi:10.1103/physrevb.108.125411","ieee":"P. M. Henderson, A. Ghazaryan, A. A. Zibrov, A. F. Young, and M. Serbyn, “Deep learning extraction of band structure parameters from density of states: A case study on trilayer graphene,” Physical Review B, vol. 108, no. 12. American Physical Society, 2023.","short":"P.M. Henderson, A. Ghazaryan, A.A. Zibrov, A.F. Young, M. Serbyn, Physical Review B 108 (2023).","mla":"Henderson, Paul M., et al. “Deep Learning Extraction of Band Structure Parameters from Density of States: A Case Study on Trilayer Graphene.” Physical Review B, vol. 108, no. 12, 125411, American Physical Society, 2023, doi:10.1103/physrevb.108.125411.","ista":"Henderson PM, Ghazaryan A, Zibrov AA, Young AF, Serbyn M. 2023. Deep learning extraction of band structure parameters from density of states: A case study on trilayer graphene. Physical Review B. 108(12), 125411.","chicago":"Henderson, Paul M, Areg Ghazaryan, Alexander A. Zibrov, Andrea F. Young, and Maksym Serbyn. “Deep Learning Extraction of Band Structure Parameters from Density of States: A Case Study on Trilayer Graphene.” Physical Review B. American Physical Society, 2023. https://doi.org/10.1103/physrevb.108.125411."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"125411"},{"year":"2023","has_accepted_license":"1","day":"21","page":"158","date_created":"2023-03-17T13:30:48Z","doi":"10.15479/at:ista:12732","date_published":"2023-03-21T00:00:00Z","oa":1,"publisher":"Institute of Science and Technology Austria","citation":{"ama":"Brighi P. Ergodicity breaking in disordered and kinetically constrained quantum many-body systems. 2023. doi:10.15479/at:ista:12732","apa":"Brighi, P. (2023). Ergodicity breaking in disordered and kinetically constrained quantum many-body systems. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:12732","short":"P. Brighi, Ergodicity Breaking in Disordered and Kinetically Constrained Quantum Many-Body Systems, Institute of Science and Technology Austria, 2023.","ieee":"P. Brighi, “Ergodicity breaking in disordered and kinetically constrained quantum many-body systems,” Institute of Science and Technology Austria, 2023.","mla":"Brighi, Pietro. Ergodicity Breaking in Disordered and Kinetically Constrained Quantum Many-Body Systems. Institute of Science and Technology Austria, 2023, doi:10.15479/at:ista:12732.","ista":"Brighi P. 2023. Ergodicity breaking in disordered and kinetically constrained quantum many-body systems. Institute of Science and Technology Austria.","chicago":"Brighi, Pietro. “Ergodicity Breaking in Disordered and Kinetically Constrained Quantum Many-Body Systems.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/at:ista:12732."},"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","article_processing_charge":"No","author":[{"last_name":"Brighi","orcid":"0000-0002-7969-2729","full_name":"Brighi, Pietro","id":"4115AF5C-F248-11E8-B48F-1D18A9856A87","first_name":"Pietro"}],"title":"Ergodicity breaking in disordered and kinetically constrained quantum many-body systems","project":[{"call_identifier":"H2020","_id":"23841C26-32DE-11EA-91FC-C7463DDC885E","grant_number":"850899","name":"Non-Ergodic Quantum Matter: Universality, Dynamics and Control"}],"degree_awarded":"PhD","publication_status":"published","publication_identifier":{"issn":["2663-337X"]},"language":[{"iso":"eng"}],"file":[{"content_type":"application/zip","access_level":"closed","relation":"source_file","file_id":"12753","checksum":"5d2de651ef9449c1b8dc27148ca74777","date_updated":"2023-03-23T16:42:56Z","file_size":42167561,"creator":"pbrighi","date_created":"2023-03-23T16:42:56Z","file_name":"Thesis_sub_PBrighi.zip"},{"success":1,"file_id":"12754","checksum":"7caa153d4a5b0873a79358787d2dfe1e","content_type":"application/pdf","relation":"main_file","access_level":"open_access","file_name":"Thesis_PBrighi.pdf","date_created":"2023-03-23T16:43:14Z","file_size":13977000,"date_updated":"2023-03-23T16:43:14Z","creator":"pbrighi"}],"ec_funded":1,"license":"https://creativecommons.org/licenses/by-nc-sa/4.0/","related_material":{"record":[{"id":"11470","status":"public","relation":"part_of_dissertation"},{"status":"public","id":"8308","relation":"part_of_dissertation"},{"id":"11469","status":"public","relation":"part_of_dissertation"},{"relation":"part_of_dissertation","status":"public","id":"12750"}]},"abstract":[{"lang":"eng","text":"Nonergodic systems, whose out-of-equilibrium dynamics fail to thermalize, provide a fascinating research direction both for fundamental reasons and for application in state of the art quantum devices.\r\nGoing beyond the description of statistical mechanics, ergodicity breaking yields a new paradigm in quantum many-body physics, introducing novel phases of matter with no counterpart at equilibrium.\r\nIn this Thesis, we address different open questions in the field, focusing on disorder-induced many-body localization (MBL) and on weak ergodicity breaking in kinetically constrained models.\r\nIn particular, we contribute to the debate about transport in kinetically constrained models, studying the effect of $U(1)$ conservation and inversion-symmetry breaking in a family of quantum East models.\r\nUsing tensor network techniques, we analyze the dynamics of large MBL systems beyond the limit of exact numerical methods.\r\nIn this setting, we approach the debated topic of the coexistence of localized and thermal eigenstates separated by energy thresholds known as many-body mobility edges.\r\nInspired by recent experiments, our work further investigates the localization of a small bath induced by the coupling to a large localized chain, the so-called MBL proximity effect.\r\n\r\nIn the first Chapter, we introduce a family of particle-conserving kinetically constrained models, inspired by the quantum East model.\r\nThe system we study features strong inversion-symmetry breaking, due to the nature of the correlated hopping.\r\nWe show that these models host so-called quantum Hilbert space fragmentation, consisting of disconnected subsectors in an entangled basis, and further provide an analytical description of this phenomenon.\r\nWe further probe its effect on dynamics of simple product states, showing revivals in fidelity and local observalbes.\r\nThe study of dynamics within the largest subsector reveals an anomalous transient superdiffusive behavior crossing over to slow logarithmic dynamics at later times.\r\nThis work suggests that particle conserving constrained models with inversion-symmetry breaking realize new universality classes of dynamics and invite their further theoretical and experimental studies.\r\n\r\nNext, we use kinetic constraints and disorder to design a model with many-body mobility edges in particle density.\r\nThis feature allows to study the dynamics of localized and thermal states in large systems beyond the limitations of previous studies.\r\nThe time-evolution shows typical signatures of localization at small densities, replaced by thermal behavior at larger densities.\r\nOur results provide evidence in favor of the stability of many-body mobility edges, which was recently challenged by a theoretical argument.\r\nTo support our findings, we probe the mechanism proposed as a cause of delocalization in many-body localized systems with mobility edges suggesting its ineffectiveness in the model studied.\r\n\r\nIn the last Chapter of this Thesis, we address the topic of many-body localization proximity effect.\r\nWe study a model inspired by recent experiments, featuring Anderson localized coupled to a small bath of free hard-core bosons.\r\nThe interaction among the two particle species results in non-trivial dynamics, which we probe using tensor network techniques.\r\nOur simulations show convincing evidence of many-body localization proximity effect when the bath is composed by a single free particle and interactions are strong.\r\nWe furthter observe an anomalous entanglement dynamics, which we explain through a phenomenological theory.\r\nFinally, we extract highly excited eigenstates of large systems, providing supplementary evidence in favor of our findings."}],"acknowledged_ssus":[{"_id":"ScienComp"}],"oa_version":"None","alternative_title":["ISTA Thesis"],"month":"03","date_updated":"2023-09-20T10:44:12Z","supervisor":[{"full_name":"Serbyn, Maksym","orcid":"0000-0002-2399-5827","last_name":"Serbyn","id":"47809E7E-F248-11E8-B48F-1D18A9856A87","first_name":"Maksym"}],"ddc":["530"],"department":[{"_id":"GradSch"},{"_id":"MaSe"}],"file_date_updated":"2023-03-23T16:43:14Z","_id":"12732","tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","image":"/images/cc_by_nc_sa.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","short":"CC BY-NC-SA (4.0)"},"type":"dissertation","status":"public"},{"citation":{"ista":"Brighi P, Ljubotina M, Serbyn M. 2023. Hilbert space fragmentation and slow dynamics in particle-conserving quantum East models. SciPost Physics. 15(3), 093.","chicago":"Brighi, Pietro, Marko Ljubotina, and Maksym Serbyn. “Hilbert Space Fragmentation and Slow Dynamics in Particle-Conserving Quantum East Models.” SciPost Physics. SciPost Foundation, 2023. https://doi.org/10.21468/scipostphys.15.3.093.","apa":"Brighi, P., Ljubotina, M., & Serbyn, M. (2023). Hilbert space fragmentation and slow dynamics in particle-conserving quantum East models. SciPost Physics. SciPost Foundation. https://doi.org/10.21468/scipostphys.15.3.093","ama":"Brighi P, Ljubotina M, Serbyn M. Hilbert space fragmentation and slow dynamics in particle-conserving quantum East models. SciPost Physics. 2023;15(3). doi:10.21468/scipostphys.15.3.093","short":"P. Brighi, M. Ljubotina, M. Serbyn, SciPost Physics 15 (2023).","ieee":"P. Brighi, M. Ljubotina, and M. Serbyn, “Hilbert space fragmentation and slow dynamics in particle-conserving quantum East models,” SciPost Physics, vol. 15, no. 3. SciPost Foundation, 2023.","mla":"Brighi, Pietro, et al. “Hilbert Space Fragmentation and Slow Dynamics in Particle-Conserving Quantum East Models.” SciPost Physics, vol. 15, no. 3, 093, SciPost Foundation, 2023, doi:10.21468/scipostphys.15.3.093."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"last_name":"Brighi","orcid":"0000-0002-7969-2729","full_name":"Brighi, Pietro","first_name":"Pietro","id":"4115AF5C-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Ljubotina","orcid":"0000-0003-0038-7068","full_name":"Ljubotina, Marko","id":"F75EE9BE-5C90-11EA-905D-16643DDC885E","first_name":"Marko"},{"last_name":"Serbyn","orcid":"0000-0002-2399-5827","full_name":"Serbyn, Maksym","first_name":"Maksym","id":"47809E7E-F248-11E8-B48F-1D18A9856A87"}],"external_id":{"arxiv":["2210.15607"]},"article_processing_charge":"No","title":"Hilbert space fragmentation and slow dynamics in particle-conserving quantum East models","article_number":"093","project":[{"grant_number":"850899","name":"Non-Ergodic Quantum Matter: Universality, Dynamics and Control","call_identifier":"H2020","_id":"23841C26-32DE-11EA-91FC-C7463DDC885E"}],"has_accepted_license":"1","year":"2023","day":"13","publication":"SciPost Physics","date_published":"2023-09-13T00:00:00Z","doi":"10.21468/scipostphys.15.3.093","date_created":"2023-09-14T13:08:23Z","acknowledgement":"We would like to thank Raimel A. Medina, Hansveer Singh, and Dmitry Abanin for useful\r\ndiscussions.The authors acknowledge support by the European Research Council\r\n(ERC) under the European Union’s Horizon 2020 research and innovation program (Grant\r\nAgreement No. 850899). We acknowledge support by the Erwin Schrödinger International\r\nInstitute for Mathematics and Physics (ESI).","publisher":"SciPost Foundation","quality_controlled":"1","oa":1,"date_updated":"2023-09-20T10:46:29Z","ddc":["530"],"file_date_updated":"2023-09-20T10:46:10Z","department":[{"_id":"MaSe"}],"_id":"14334","article_type":"original","type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"status":"public","keyword":["General Physics and Astronomy"],"publication_identifier":{"issn":["2542-4653"]},"publication_status":"published","file":[{"access_level":"open_access","relation":"main_file","content_type":"application/pdf","file_id":"14350","checksum":"4cef6a8021f6b6c47ab2f2f2b1387ac2","success":1,"creator":"dernst","date_updated":"2023-09-20T10:46:10Z","file_size":4866506,"date_created":"2023-09-20T10:46:10Z","file_name":"2023_SciPostPhysics_Brighi.pdf"}],"language":[{"iso":"eng"}],"volume":15,"issue":"3","related_material":{"record":[{"relation":"earlier_version","id":"12750","status":"public"}]},"license":"https://creativecommons.org/licenses/by/4.0/","ec_funded":1,"abstract":[{"text":"Quantum kinetically constrained models have recently attracted significant attention due to their anomalous dynamics and thermalization. In this work, we introduce a hitherto unexplored family of kinetically constrained models featuring conserved particle number and strong inversion-symmetry breaking due to facilitated hopping. We demonstrate that these models provide a generic example of so-called quantum Hilbert space fragmentation, that is manifested in disconnected sectors in the Hilbert space that are not apparent in the computational basis. Quantum Hilbert space fragmentation leads to an exponential in system size number of eigenstates with exactly zero entanglement entropy across several bipartite cuts. These eigenstates can be probed dynamically using quenches from simple initial product states. In addition, we study the particle spreading under unitary dynamics launched from the domain wall state, and find faster than diffusive dynamics at high particle densities, that crosses over into logarithmically slow relaxation at smaller densities. Using a classically simulable cellular automaton, we reproduce the logarithmic dynamics observed in the quantum case. Our work suggests that particle conserving constrained models with inversion symmetry breaking realize so far unexplored dynamical behavior and invite their further theoretical and experimental studies.","lang":"eng"}],"oa_version":"Published Version","month":"09","intvolume":" 15"},{"citation":{"ista":"Al Hyder R, Cappellaro A, Lemeshko M, Volosniev A. 2023. Achiral dipoles on a ferromagnet can affect its magnetization direction. The Journal of Chemical Physics. 159(10), 104103.","chicago":"Al Hyder, Ragheed, Alberto Cappellaro, Mikhail Lemeshko, and Artem Volosniev. “Achiral Dipoles on a Ferromagnet Can Affect Its Magnetization Direction.” The Journal of Chemical Physics. AIP Publishing, 2023. https://doi.org/10.1063/5.0165806.","short":"R. Al Hyder, A. Cappellaro, M. Lemeshko, A. Volosniev, The Journal of Chemical Physics 159 (2023).","ieee":"R. Al Hyder, A. Cappellaro, M. Lemeshko, and A. Volosniev, “Achiral dipoles on a ferromagnet can affect its magnetization direction,” The Journal of Chemical Physics, vol. 159, no. 10. AIP Publishing, 2023.","ama":"Al Hyder R, Cappellaro A, Lemeshko M, Volosniev A. Achiral dipoles on a ferromagnet can affect its magnetization direction. The Journal of Chemical Physics. 2023;159(10). doi:10.1063/5.0165806","apa":"Al Hyder, R., Cappellaro, A., Lemeshko, M., & Volosniev, A. (2023). Achiral dipoles on a ferromagnet can affect its magnetization direction. The Journal of Chemical Physics. AIP Publishing. https://doi.org/10.1063/5.0165806","mla":"Al Hyder, Ragheed, et al. “Achiral Dipoles on a Ferromagnet Can Affect Its Magnetization Direction.” The Journal of Chemical Physics, vol. 159, no. 10, 104103, AIP Publishing, 2023, doi:10.1063/5.0165806."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"id":"d1c405be-ae15-11ed-8510-ccf53278162e","first_name":"Ragheed","last_name":"Al Hyder","full_name":"Al Hyder, Ragheed"},{"first_name":"Alberto","id":"9d13b3cb-30a2-11eb-80dc-f772505e8660","orcid":"0000-0001-6110-2359","full_name":"Cappellaro, Alberto","last_name":"Cappellaro"},{"id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","first_name":"Mikhail","full_name":"Lemeshko, Mikhail","orcid":"0000-0002-6990-7802","last_name":"Lemeshko"},{"last_name":"Volosniev","orcid":"0000-0003-0393-5525","full_name":"Volosniev, Artem","id":"37D278BC-F248-11E8-B48F-1D18A9856A87","first_name":"Artem"}],"article_processing_charge":"Yes (in subscription journal)","external_id":{"pmid":["37694742"],"arxiv":["2306.17592"]},"title":"Achiral dipoles on a ferromagnet can affect its magnetization direction","article_number":"104103","project":[{"_id":"bd7b5202-d553-11ed-ba76-9b1c1b258338","name":"Non-equilibrium Field Theory of Molecular Rotations","grant_number":"101062862"},{"grant_number":"801770","name":"Angulon: physics and applications of a new quasiparticle","call_identifier":"H2020","_id":"2688CF98-B435-11E9-9278-68D0E5697425"}],"has_accepted_license":"1","year":"2023","day":"11","publication":"The Journal of Chemical Physics","doi":"10.1063/5.0165806","date_published":"2023-09-11T00:00:00Z","date_created":"2023-09-13T09:25:09Z","acknowledgement":"We thank Zhanybek Alpichshev, Mohammad Reza Safari, Binghai Yan, and Yossi Paltiel for enlightening discussions.\r\nM.L. acknowledges support from the European Research Council (ERC) Starting Grant No. 801770 (ANGULON). A. C. received funding from the European Union’s Horizon Europe research and innovation program under the Marie Skłodowska-Curie Grant Agreement No. 101062862 - NeqMolRot.","quality_controlled":"1","publisher":"AIP Publishing","oa":1,"date_updated":"2023-09-20T09:48:12Z","ddc":["530"],"department":[{"_id":"MiLe"}],"file_date_updated":"2023-09-13T09:34:20Z","_id":"14321","article_type":"original","type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"status":"public","keyword":["Physical and Theoretical Chemistry","General Physics and Astronomy"],"publication_identifier":{"issn":["0021-9606"],"eissn":["1089-7690"]},"publication_status":"published","file":[{"file_name":"104103_1_5.0165806.pdf","date_created":"2023-09-13T09:34:20Z","creator":"acappell","file_size":5749653,"date_updated":"2023-09-13T09:34:20Z","success":1,"file_id":"14322","checksum":"507ab65ab29e2c987c94cabad7c5370b","relation":"main_file","access_level":"open_access","content_type":"application/pdf"}],"language":[{"iso":"eng"}],"issue":"10","volume":159,"ec_funded":1,"abstract":[{"text":"We demonstrate the possibility of a coupling between the magnetization direction of a ferromagnet and the tilting angle of adsorbed achiral molecules. To illustrate the mechanism of the coupling, we analyze a minimal Stoner model that includes Rashba spin–orbit coupling due to the electric field on the surface of the ferromagnet. The proposed mechanism allows us to study magnetic anisotropy of the system with an extended Stoner–Wohlfarth model and argue that adsorbed achiral molecules can change magnetocrystalline anisotropy of the substrate. Our research aims to motivate further experimental studies of the current-free chirality induced spin selectivity effect involving both enantiomers.","lang":"eng"}],"pmid":1,"oa_version":"Published Version","scopus_import":"1","month":"09","intvolume":" 159"},{"scopus_import":"1","month":"08","intvolume":" 123","abstract":[{"lang":"eng","text":"We propose a simple method to measure nonlinear Kerr refractive index in mid-infrared frequency range that avoids using sophisticated infrared detectors. Our approach is based on using a near-infrared probe beam which interacts with a mid-IR beam via wavelength-non-degenerate cross-phase modulation (XPM). By carefully measuring XPM-induced spectral modifications in the probe beam and comparing the experimental data with simulation results, we extract the value for the non-degenerate Kerr index. Finally, in order to obtain the value of degenerate mid-IR Kerr index, we use the well-established two-band formalism of Sheik-Bahae et al., which is shown to become particularly simple in the limit of low frequencies. The proposed technique is complementary to the conventional techniques, such as z-scan, and has the advantage of not requiring any mid-infrared detectors."}],"oa_version":"Published Version","volume":123,"issue":"9","publication_identifier":{"issn":["0003-6951"]},"publication_status":"published","file":[{"relation":"main_file","access_level":"open_access","content_type":"application/pdf","success":1,"file_id":"14353","checksum":"89a1b604d58b209fec66c6b6f919ac98","creator":"dernst","file_size":1486715,"date_updated":"2023-09-20T11:36:16Z","file_name":"2023_ApplPhysLetter_Lorenc.pdf","date_created":"2023-09-20T11:36:16Z"}],"language":[{"iso":"eng"}],"type":"journal_article","article_type":"original","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"status":"public","_id":"14342","department":[{"_id":"ZhAl"}],"file_date_updated":"2023-09-20T11:36:16Z","date_updated":"2023-09-20T11:50:06Z","ddc":["530"],"quality_controlled":"1","publisher":"AIP Publishing","oa":1,"acknowledgement":"The work was supported by IST Austria. The authors would like to gratefully acknowledge the help and assistance of Professor John M. Dudley.","doi":"10.1063/5.0161713","date_published":"2023-08-28T00:00:00Z","date_created":"2023-09-17T22:01:09Z","has_accepted_license":"1","year":"2023","day":"28","publication":"Applied Physics Letters","article_number":"091104","author":[{"first_name":"Dusan","id":"40D8A3E6-F248-11E8-B48F-1D18A9856A87","last_name":"Lorenc","full_name":"Lorenc, Dusan"},{"first_name":"Zhanybek","id":"45E67A2A-F248-11E8-B48F-1D18A9856A87","last_name":"Alpichshev","full_name":"Alpichshev, Zhanybek","orcid":"0000-0002-7183-5203"}],"external_id":{"arxiv":["2306.09043"]},"article_processing_charge":"Yes (in subscription journal)","title":"Mid-infrared Kerr index evaluation via cross-phase modulation with a near-infrared probe beam","citation":{"mla":"Lorenc, Dusan, and Zhanybek Alpichshev. “Mid-Infrared Kerr Index Evaluation via Cross-Phase Modulation with a near-Infrared Probe Beam.” Applied Physics Letters, vol. 123, no. 9, 091104, AIP Publishing, 2023, doi:10.1063/5.0161713.","ieee":"D. Lorenc and Z. Alpichshev, “Mid-infrared Kerr index evaluation via cross-phase modulation with a near-infrared probe beam,” Applied Physics Letters, vol. 123, no. 9. AIP Publishing, 2023.","short":"D. Lorenc, Z. Alpichshev, Applied Physics Letters 123 (2023).","apa":"Lorenc, D., & Alpichshev, Z. (2023). Mid-infrared Kerr index evaluation via cross-phase modulation with a near-infrared probe beam. Applied Physics Letters. AIP Publishing. https://doi.org/10.1063/5.0161713","ama":"Lorenc D, Alpichshev Z. Mid-infrared Kerr index evaluation via cross-phase modulation with a near-infrared probe beam. Applied Physics Letters. 2023;123(9). doi:10.1063/5.0161713","chicago":"Lorenc, Dusan, and Zhanybek Alpichshev. “Mid-Infrared Kerr Index Evaluation via Cross-Phase Modulation with a near-Infrared Probe Beam.” Applied Physics Letters. AIP Publishing, 2023. https://doi.org/10.1063/5.0161713.","ista":"Lorenc D, Alpichshev Z. 2023. Mid-infrared Kerr index evaluation via cross-phase modulation with a near-infrared probe beam. Applied Physics Letters. 123(9), 091104."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"publication":"Nature","day":"07","year":"2023","date_created":"2023-09-17T22:01:09Z","date_published":"2023-09-07T00:00:00Z","doi":"10.1038/s41586-023-06399-5","page":"71-74","acknowledgement":"We acknowledge the assistance of the Miba machine shop and the team of the ISTA-HPC cluster. We thank M. Quadrio for the discussions. The work was supported by the Simons Foundation (grant no. 662960) and by the Austrian Science Fund (grant no. I4188-N30), within Deutsche Forschungsgemeinschaft research unit FOR 2688.","quality_controlled":"1","publisher":"Springer Nature","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"chicago":"Scarselli, Davide, Jose M Lopez Alonso, Atul Varshney, and Björn Hof. “Turbulence Suppression by Cardiac-Cycle-Inspired Driving of Pipe Flow.” Nature. Springer Nature, 2023. https://doi.org/10.1038/s41586-023-06399-5.","ista":"Scarselli D, Lopez Alonso JM, Varshney A, Hof B. 2023. Turbulence suppression by cardiac-cycle-inspired driving of pipe flow. Nature. 621(7977), 71–74.","mla":"Scarselli, Davide, et al. “Turbulence Suppression by Cardiac-Cycle-Inspired Driving of Pipe Flow.” Nature, vol. 621, no. 7977, Springer Nature, 2023, pp. 71–74, doi:10.1038/s41586-023-06399-5.","apa":"Scarselli, D., Lopez Alonso, J. M., Varshney, A., & Hof, B. (2023). Turbulence suppression by cardiac-cycle-inspired driving of pipe flow. Nature. Springer Nature. https://doi.org/10.1038/s41586-023-06399-5","ama":"Scarselli D, Lopez Alonso JM, Varshney A, Hof B. Turbulence suppression by cardiac-cycle-inspired driving of pipe flow. Nature. 2023;621(7977):71-74. doi:10.1038/s41586-023-06399-5","short":"D. Scarselli, J.M. Lopez Alonso, A. Varshney, B. Hof, Nature 621 (2023) 71–74.","ieee":"D. Scarselli, J. M. Lopez Alonso, A. Varshney, and B. Hof, “Turbulence suppression by cardiac-cycle-inspired driving of pipe flow,” Nature, vol. 621, no. 7977. Springer Nature, pp. 71–74, 2023."},"title":"Turbulence suppression by cardiac-cycle-inspired driving of pipe flow","external_id":{"pmid":["37673988"]},"article_processing_charge":"No","author":[{"first_name":"Davide","id":"40315C30-F248-11E8-B48F-1D18A9856A87","last_name":"Scarselli","full_name":"Scarselli, Davide","orcid":"0000-0001-5227-4271"},{"last_name":"Lopez Alonso","orcid":"0000-0002-0384-2022","full_name":"Lopez Alonso, Jose M","id":"40770848-F248-11E8-B48F-1D18A9856A87","first_name":"Jose M"},{"last_name":"Varshney","full_name":"Varshney, Atul","orcid":"0000-0002-3072-5999","id":"2A2006B2-F248-11E8-B48F-1D18A9856A87","first_name":"Atul"},{"full_name":"Hof, Björn","orcid":"0000-0003-2057-2754","last_name":"Hof","id":"3A374330-F248-11E8-B48F-1D18A9856A87","first_name":"Björn"}],"project":[{"grant_number":"662960","name":"Revisiting the Turbulence Problem Using Statistical Mechanics: Experimental Studies on Transitional and Turbulent Flows","_id":"238598C6-32DE-11EA-91FC-C7463DDC885E"},{"_id":"238B8092-32DE-11EA-91FC-C7463DDC885E","call_identifier":"FWF","name":"Instabilities in pulsating pipe flow of Newtonian and complex fluids","grant_number":"I04188"}],"language":[{"iso":"eng"}],"publication_status":"published","publication_identifier":{"eissn":["1476-4687"],"issn":["0028-0836"]},"issue":"7977","volume":621,"related_material":{"link":[{"relation":"press_release","url":"https://www.ista.ac.at/en/news/pumping-like-the-heart/","description":"News on ISTA website"}]},"oa_version":"None","pmid":1,"acknowledged_ssus":[{"_id":"M-Shop"},{"_id":"ScienComp"}],"abstract":[{"text":"Flows through pipes and channels are, in practice, almost always turbulent, and the multiscale eddying motion is responsible for a major part of the encountered friction losses and pumping costs1. Conversely, for pulsatile flows, in particular for aortic blood flow, turbulence levels remain low despite relatively large peak velocities. For aortic blood flow, high turbulence levels are intolerable as they would damage the shear-sensitive endothelial cell layer2,3,4,5. Here we show that turbulence in ordinary pipe flow is diminished if the flow is driven in a pulsatile mode that incorporates all the key features of the cardiac waveform. At Reynolds numbers comparable to those of aortic blood flow, turbulence is largely inhibited, whereas at much higher speeds, the turbulent drag is reduced by more than 25%. This specific operation mode is more efficient when compared with steady driving, which is the present situation for virtually all fluid transport processes ranging from heating circuits to water, gas and oil pipelines.","lang":"eng"}],"intvolume":" 621","month":"09","scopus_import":"1","date_updated":"2023-09-20T12:10:22Z","department":[{"_id":"BjHo"}],"_id":"14341","status":"public","article_type":"original","type":"journal_article"},{"quality_controlled":"1","publisher":"Elsevier","oa":1,"doi":"10.1016/j.gim.2023.100938","date_published":"2023-11-01T00:00:00Z","date_created":"2023-09-25T08:44:29Z","has_accepted_license":"1","year":"2023","day":"01","publication":"Genetics in Medicine","article_number":"100938","author":[{"last_name":"Accogli","full_name":"Accogli, Andrea","first_name":"Andrea"},{"first_name":"Sheng-Jia","last_name":"Lin","full_name":"Lin, Sheng-Jia"},{"last_name":"Severino","full_name":"Severino, Mariasavina","first_name":"Mariasavina"},{"last_name":"Kim","full_name":"Kim, Sung-Hoon","first_name":"Sung-Hoon"},{"last_name":"Huang","full_name":"Huang, Kevin","orcid":"0000-0002-2512-7812","first_name":"Kevin","id":"3b3d2888-1ff6-11ee-9fa6-8f209ca91fe3"},{"first_name":"Clarissa","full_name":"Rocca, Clarissa","last_name":"Rocca"},{"first_name":"Megan","last_name":"Landsverk","full_name":"Landsverk, Megan"},{"first_name":"Maha S.","full_name":"Zaki, Maha S.","last_name":"Zaki"},{"first_name":"Almundher","full_name":"Al-Maawali, Almundher","last_name":"Al-Maawali"},{"first_name":"Varunvenkat M.","last_name":"Srinivasan","full_name":"Srinivasan, Varunvenkat M."},{"full_name":"Al-Thihli, Khalid","last_name":"Al-Thihli","first_name":"Khalid"},{"first_name":"G. Bradly","last_name":"Schaefer","full_name":"Schaefer, G. Bradly"},{"last_name":"Davis","full_name":"Davis, Monica","first_name":"Monica"},{"first_name":"Davide","last_name":"Tonduti","full_name":"Tonduti, Davide"},{"full_name":"Doneda, Chiara","last_name":"Doneda","first_name":"Chiara"},{"full_name":"Marten, Lara M.","last_name":"Marten","first_name":"Lara M."},{"last_name":"Mühlhausen","full_name":"Mühlhausen, Chris","first_name":"Chris"},{"first_name":"Maria","last_name":"Gomez","full_name":"Gomez, Maria"},{"first_name":"Eleonora","full_name":"Lamantea, Eleonora","last_name":"Lamantea"},{"last_name":"Mena","full_name":"Mena, Rafael","first_name":"Rafael"},{"last_name":"Nizon","full_name":"Nizon, Mathilde","first_name":"Mathilde"},{"first_name":"Vincent","full_name":"Procaccio, Vincent","last_name":"Procaccio"},{"first_name":"Amber","full_name":"Begtrup, Amber","last_name":"Begtrup"},{"full_name":"Telegrafi, Aida","last_name":"Telegrafi","first_name":"Aida"},{"full_name":"Cui, Hong","last_name":"Cui","first_name":"Hong"},{"first_name":"Heidi L.","last_name":"Schulz","full_name":"Schulz, Heidi L."},{"first_name":"Julia","full_name":"Mohr, Julia","last_name":"Mohr"},{"first_name":"Saskia","full_name":"Biskup, Saskia","last_name":"Biskup"},{"last_name":"Loos","full_name":"Loos, Mariana Amina","first_name":"Mariana Amina"},{"full_name":"Aráoz, Hilda Verónica","last_name":"Aráoz","first_name":"Hilda Verónica"},{"last_name":"Salpietro","full_name":"Salpietro, Vincenzo","first_name":"Vincenzo"},{"first_name":"Laura Davis","last_name":"Keppen","full_name":"Keppen, Laura Davis"},{"first_name":"Manali","full_name":"Chitre, Manali","last_name":"Chitre"},{"last_name":"Petree","full_name":"Petree, Cassidy","first_name":"Cassidy"},{"last_name":"Raymond","full_name":"Raymond, Lucy","first_name":"Lucy"},{"last_name":"Vogt","full_name":"Vogt, Julie","first_name":"Julie"},{"first_name":"Lindsey B.","last_name":"Sawyer","full_name":"Sawyer, Lindsey B."},{"full_name":"Basinger, Alice A.","last_name":"Basinger","first_name":"Alice A."},{"full_name":"Pedersen, Signe Vandal","last_name":"Pedersen","first_name":"Signe Vandal"},{"first_name":"Toni S.","full_name":"Pearson, Toni S.","last_name":"Pearson"},{"last_name":"Grange","full_name":"Grange, Dorothy K.","first_name":"Dorothy K."},{"first_name":"Lokesh","last_name":"Lingappa","full_name":"Lingappa, Lokesh"},{"first_name":"Paige","full_name":"McDunnah, Paige","last_name":"McDunnah"},{"first_name":"Rita","full_name":"Horvath, Rita","last_name":"Horvath"},{"full_name":"Cognè, Benjamin","last_name":"Cognè","first_name":"Benjamin"},{"first_name":"Bertrand","last_name":"Isidor","full_name":"Isidor, Bertrand"},{"first_name":"Andreas","full_name":"Hahn, Andreas","last_name":"Hahn"},{"first_name":"Karen W.","last_name":"Gripp","full_name":"Gripp, Karen W."},{"full_name":"Jafarnejad, Seyed Mehdi","last_name":"Jafarnejad","first_name":"Seyed Mehdi"},{"full_name":"Østergaard, Elsebet","last_name":"Østergaard","first_name":"Elsebet"},{"full_name":"Prada, Carlos E.","last_name":"Prada","first_name":"Carlos E."},{"full_name":"Ghezzi, Daniele","last_name":"Ghezzi","first_name":"Daniele"},{"full_name":"Gowda, Vykuntaraju K.","last_name":"Gowda","first_name":"Vykuntaraju K."},{"first_name":"Robert W.","last_name":"Taylor","full_name":"Taylor, Robert W."},{"first_name":"Nahum","last_name":"Sonenberg","full_name":"Sonenberg, Nahum"},{"full_name":"Houlden, Henry","last_name":"Houlden","first_name":"Henry"},{"first_name":"Marie","last_name":"Sissler","full_name":"Sissler, Marie"},{"last_name":"Varshney","full_name":"Varshney, Gaurav K.","first_name":"Gaurav K."},{"first_name":"Reza","full_name":"Maroofian, Reza","last_name":"Maroofian"}],"article_processing_charge":"No","title":"Clinical, neuroradiological, and molecular characterization of mitochondrial threonyl-tRNA-synthetase (TARS2)-related disorder","citation":{"chicago":"Accogli, Andrea, Sheng-Jia Lin, Mariasavina Severino, Sung-Hoon Kim, Kevin Huang, Clarissa Rocca, Megan Landsverk, et al. “Clinical, Neuroradiological, and Molecular Characterization of Mitochondrial Threonyl-TRNA-Synthetase (TARS2)-Related Disorder.” Genetics in Medicine. Elsevier, 2023. https://doi.org/10.1016/j.gim.2023.100938.","ista":"Accogli A, Lin S-J, Severino M, Kim S-H, Huang K, Rocca C, Landsverk M, Zaki MS, Al-Maawali A, Srinivasan VM, Al-Thihli K, Schaefer GB, Davis M, Tonduti D, Doneda C, Marten LM, Mühlhausen C, Gomez M, Lamantea E, Mena R, Nizon M, Procaccio V, Begtrup A, Telegrafi A, Cui H, Schulz HL, Mohr J, Biskup S, Loos MA, Aráoz HV, Salpietro V, Keppen LD, Chitre M, Petree C, Raymond L, Vogt J, Sawyer LB, Basinger AA, Pedersen SV, Pearson TS, Grange DK, Lingappa L, McDunnah P, Horvath R, Cognè B, Isidor B, Hahn A, Gripp KW, Jafarnejad SM, Østergaard E, Prada CE, Ghezzi D, Gowda VK, Taylor RW, Sonenberg N, Houlden H, Sissler M, Varshney GK, Maroofian R. 2023. Clinical, neuroradiological, and molecular characterization of mitochondrial threonyl-tRNA-synthetase (TARS2)-related disorder. Genetics in Medicine. 25(11), 100938.","mla":"Accogli, Andrea, et al. “Clinical, Neuroradiological, and Molecular Characterization of Mitochondrial Threonyl-TRNA-Synthetase (TARS2)-Related Disorder.” Genetics in Medicine, vol. 25, no. 11, 100938, Elsevier, 2023, doi:10.1016/j.gim.2023.100938.","apa":"Accogli, A., Lin, S.-J., Severino, M., Kim, S.-H., Huang, K., Rocca, C., … Maroofian, R. (2023). Clinical, neuroradiological, and molecular characterization of mitochondrial threonyl-tRNA-synthetase (TARS2)-related disorder. Genetics in Medicine. Elsevier. https://doi.org/10.1016/j.gim.2023.100938","ama":"Accogli A, Lin S-J, Severino M, et al. Clinical, neuroradiological, and molecular characterization of mitochondrial threonyl-tRNA-synthetase (TARS2)-related disorder. Genetics in Medicine. 2023;25(11). doi:10.1016/j.gim.2023.100938","ieee":"A. Accogli et al., “Clinical, neuroradiological, and molecular characterization of mitochondrial threonyl-tRNA-synthetase (TARS2)-related disorder,” Genetics in Medicine, vol. 25, no. 11. Elsevier, 2023.","short":"A. Accogli, S.-J. Lin, M. Severino, S.-H. Kim, K. Huang, C. Rocca, M. Landsverk, M.S. Zaki, A. Al-Maawali, V.M. Srinivasan, K. Al-Thihli, G.B. Schaefer, M. Davis, D. Tonduti, C. Doneda, L.M. Marten, C. Mühlhausen, M. Gomez, E. Lamantea, R. Mena, M. Nizon, V. Procaccio, A. Begtrup, A. Telegrafi, H. Cui, H.L. Schulz, J. Mohr, S. Biskup, M.A. Loos, H.V. Aráoz, V. Salpietro, L.D. Keppen, M. Chitre, C. Petree, L. Raymond, J. Vogt, L.B. Sawyer, A.A. Basinger, S.V. Pedersen, T.S. Pearson, D.K. Grange, L. Lingappa, P. McDunnah, R. Horvath, B. Cognè, B. Isidor, A. Hahn, K.W. Gripp, S.M. Jafarnejad, E. Østergaard, C.E. Prada, D. Ghezzi, V.K. Gowda, R.W. Taylor, N. Sonenberg, H. Houlden, M. Sissler, G.K. Varshney, R. Maroofian, Genetics in Medicine 25 (2023)."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","scopus_import":"1","month":"11","intvolume":" 25","abstract":[{"lang":"eng","text":"Purpose: \r\nBiallelic variants in TARS2, encoding the mitochondrial threonyl-tRNA-synthetase, have been reported in a small group of individuals displaying a neurodevelopmental phenotype but with limited neuroradiological data and insufficient evidence for causality of the variants.\r\nMethods:\r\nExome or genome sequencing was carried out in 15 families. Clinical and neuroradiological evaluation was performed for all affected individuals, including review of 10 previously reported individuals. The pathogenicity of TARS2 variants was evaluated using in vitro assays and a zebrafish model.\r\nResults:\r\nWe report 18 new individuals harboring biallelic TARS2 variants. Phenotypically, these individuals show developmental delay/intellectual disability, regression, cerebellar and cerebral atrophy, basal ganglia signal alterations, hypotonia, cerebellar signs, and increased blood lactate. In vitro studies showed that variants within the TARS2301-381 region had decreased binding to Rag GTPases, likely impairing mTORC1 activity. The zebrafish model recapitulated key features of the human phenotype and unraveled dysregulation of downstream targets of mTORC1 signaling. Functional testing of the variants confirmed the pathogenicity in a zebrafish model.\r\nConclusion:\r\nWe define the clinico-radiological spectrum of TARS2-related mitochondrial disease, unveil the likely involvement of the mTORC1 signaling pathway as a distinct molecular mechanism, and establish a TARS2 zebrafish model as an important tool to study variant pathogenicity."}],"oa_version":"Published Version","volume":25,"issue":"11","publication_identifier":{"issn":["1098-3600"]},"publication_status":"published","file":[{"date_updated":"2023-09-25T08:48:54Z","file_size":4105513,"creator":"dernst","date_created":"2023-09-25T08:48:54Z","file_name":"2023_GeneticsMedicine_Accogli.pdf","content_type":"application/pdf","access_level":"open_access","relation":"main_file","file_id":"14369","checksum":"440f0cd8a2ffcbe03c015c1746728387","success":1}],"language":[{"iso":"eng"}],"type":"journal_article","article_type":"original","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"status":"public","keyword":["Genetics (clinical)"],"_id":"14368","file_date_updated":"2023-09-25T08:48:54Z","date_updated":"2023-09-25T08:50:10Z","extern":"1","ddc":["570"]},{"date_updated":"2023-09-25T11:04:29Z","ddc":["000"],"department":[{"_id":"GradSch"},{"_id":"VlKo"}],"file_date_updated":"2023-08-07T11:55:43Z","_id":"13120","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"conference":{"end_date":"2023-08-04","location":"Bialystok, Poland","start_date":"2023-07-31","name":"ITP: International Conference on Interactive Theorem Proving"},"type":"conference","status":"public","publication_status":"published","publication_identifier":{"isbn":["9783959772846"],"eissn":["1868-8969"]},"language":[{"iso":"eng"}],"file":[{"access_level":"open_access","relation":"main_file","content_type":"application/pdf","checksum":"773a0197f05b67feaa6cb1e17ec3642d","file_id":"13982","success":1,"creator":"dernst","date_updated":"2023-08-07T11:55:43Z","file_size":715976,"date_created":"2023-08-07T11:55:43Z","file_name":"2023_LIPIcS_Dvorak.pdf"}],"volume":268,"related_material":{"link":[{"relation":"software","url":"https://github.com/madvorak/grammars/tree/publish"}]},"abstract":[{"text":"We formalized general (i.e., type-0) grammars using the Lean 3 proof assistant. We defined basic notions of rewrite rules and of words derived by a grammar, and used grammars to show closure of the class of type-0 languages under four operations: union, reversal, concatenation, and the Kleene star. The literature mostly focuses on Turing machine arguments, which are possibly more difficult to formalize. For the Kleene star, we could not follow the literature and came up with our own grammar-based construction.","lang":"eng"}],"oa_version":"Published Version","scopus_import":"1","alternative_title":["LIPIcs"],"intvolume":" 268","month":"07","citation":{"apa":"Dvorak, M., & Blanchette, J. (2023). Closure properties of general grammars - formally verified. In 14th International Conference on Interactive Theorem Proving (Vol. 268). Bialystok, Poland: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.ITP.2023.15","ama":"Dvorak M, Blanchette J. Closure properties of general grammars - formally verified. In: 14th International Conference on Interactive Theorem Proving. Vol 268. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2023. doi:10.4230/LIPIcs.ITP.2023.15","ieee":"M. Dvorak and J. Blanchette, “Closure properties of general grammars - formally verified,” in 14th International Conference on Interactive Theorem Proving, Bialystok, Poland, 2023, vol. 268.","short":"M. Dvorak, J. Blanchette, in:, 14th International Conference on Interactive Theorem Proving, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023.","mla":"Dvorak, Martin, and Jasmin Blanchette. “Closure Properties of General Grammars - Formally Verified.” 14th International Conference on Interactive Theorem Proving, vol. 268, 15, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023, doi:10.4230/LIPIcs.ITP.2023.15.","ista":"Dvorak M, Blanchette J. 2023. Closure properties of general grammars - formally verified. 14th International Conference on Interactive Theorem Proving. ITP: International Conference on Interactive Theorem Proving, LIPIcs, vol. 268, 15.","chicago":"Dvorak, Martin, and Jasmin Blanchette. “Closure Properties of General Grammars - Formally Verified.” In 14th International Conference on Interactive Theorem Proving, Vol. 268. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2023. https://doi.org/10.4230/LIPIcs.ITP.2023.15."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","external_id":{"arxiv":["2302.06420"]},"article_processing_charge":"No","author":[{"last_name":"Dvorak","orcid":"0000-0001-5293-214X","full_name":"Dvorak, Martin","id":"40ED02A8-C8B4-11E9-A9C0-453BE6697425","first_name":"Martin"},{"full_name":"Blanchette, Jasmin","last_name":"Blanchette","first_name":"Jasmin"}],"title":"Closure properties of general grammars - formally verified","article_number":"15","year":"2023","has_accepted_license":"1","publication":"14th International Conference on Interactive Theorem Proving","day":"27","date_created":"2023-06-05T07:29:05Z","doi":"10.4230/LIPIcs.ITP.2023.15","date_published":"2023-07-27T00:00:00Z","acknowledgement":"Jasmin Blanchette: This research has received funding from the Netherlands Organization\r\nfor Scientific Research (NWO) under the Vidi program (project No. 016.Vidi.189.037, Lean Forward).\r\n__\r\nWe thank Vladimir Kolmogorov for making this collaboration possible. We\r\nthank Václav Končický for discussing ideas about the Kleene star construction. We thank Patrick Johnson, Floris van Doorn, and Damiano Testa for their small yet very valuable contributions to our code. We thank Eric Wieser for simplifying one of our proofs. We thank Mark Summerfield for suggesting textual improvements. We thank the anonymous reviewers for very helpful comments. Finally, we thank the Lean community for helping us with various technical issues and answering many questions. ","oa":1,"publisher":"Schloss Dagstuhl - Leibniz-Zentrum für Informatik","quality_controlled":"1"},{"project":[{"call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"chicago":"Arroyo Guevara, Alan M, and Stefan Felsner. “Approximating the Bundled Crossing Number.” Journal of Graph Algorithms and Applications. Brown University, 2023. https://doi.org/10.7155/jgaa.00629.","ista":"Arroyo Guevara AM, Felsner S. 2023. Approximating the bundled crossing number. Journal of Graph Algorithms and Applications. 27(6), 433–457.","mla":"Arroyo Guevara, Alan M., and Stefan Felsner. “Approximating the Bundled Crossing Number.” Journal of Graph Algorithms and Applications, vol. 27, no. 6, Brown University, 2023, pp. 433–57, doi:10.7155/jgaa.00629.","ama":"Arroyo Guevara AM, Felsner S. Approximating the bundled crossing number. Journal of Graph Algorithms and Applications. 2023;27(6):433-457. doi:10.7155/jgaa.00629","apa":"Arroyo Guevara, A. M., & Felsner, S. (2023). Approximating the bundled crossing number. Journal of Graph Algorithms and Applications. Brown University. https://doi.org/10.7155/jgaa.00629","short":"A.M. Arroyo Guevara, S. Felsner, Journal of Graph Algorithms and Applications 27 (2023) 433–457.","ieee":"A. M. Arroyo Guevara and S. Felsner, “Approximating the bundled crossing number,” Journal of Graph Algorithms and Applications, vol. 27, no. 6. Brown University, pp. 433–457, 2023."},"title":"Approximating the bundled crossing number","author":[{"first_name":"Alan M","id":"3207FDC6-F248-11E8-B48F-1D18A9856A87","last_name":"Arroyo Guevara","orcid":"0000-0003-2401-8670","full_name":"Arroyo Guevara, Alan M"},{"full_name":"Felsner, Stefan","last_name":"Felsner","first_name":"Stefan"}],"article_processing_charge":"Yes","external_id":{"arxiv":["2109.14892"]},"acknowledgement":"This work was initiated during the Workshop on Geometric Graphs in November 2019 in Strobl, Austria. We would like to thank Oswin Aichholzer, Fabian Klute, Man-Kwun Chiu, Martin Balko, Pavel Valtr for their avid discussions during the workshop. The first author has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sk lodowska-Curie grant agreement No 754411. The second author has been supported by the German Research Foundation DFG Project FE 340/12-1. An extended abstract of this paper has been published in the proceedings of WALCOM 2022 in the Springer LNCS series, vol. 13174, pages 383–395.","quality_controlled":"1","publisher":"Brown University","oa":1,"day":"01","publication":"Journal of Graph Algorithms and Applications","has_accepted_license":"1","year":"2023","date_published":"2023-07-01T00:00:00Z","doi":"10.7155/jgaa.00629","date_created":"2023-08-06T22:01:11Z","page":"433-457","_id":"13969","status":"public","type":"journal_article","article_type":"original","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"ddc":["510"],"date_updated":"2023-09-25T10:56:10Z","file_date_updated":"2023-08-07T08:00:48Z","department":[{"_id":"UlWa"}],"oa_version":"Published Version","abstract":[{"lang":"eng","text":"Bundling crossings is a strategy which can enhance the readability\r\nof graph drawings. In this paper we consider good drawings, i.e., we require that\r\nany two edges have at most one common point which can be a common vertex or a\r\ncrossing. Our main result is that there is a polynomial-time algorithm to compute an\r\n8-approximation of the bundled crossing number of a good drawing with no toothed\r\nhole. In general the number of toothed holes has to be added to the 8-approximation.\r\nIn the special case of circular drawings the approximation factor is 8, this improves\r\nupon the 10-approximation of Fink et al. [14]. Our approach also works with the same\r\napproximation factor for families of pseudosegments, i.e., curves intersecting at most\r\nonce. We also show how to compute a 9/2-approximation when the intersection graph of\r\nthe pseudosegments is bipartite and has no toothed hole."}],"month":"07","intvolume":" 27","scopus_import":"1","file":[{"relation":"main_file","access_level":"open_access","content_type":"application/pdf","success":1,"file_id":"13979","checksum":"9c30d2b8e324cc1c904f2aeec92013a3","creator":"dernst","file_size":865774,"date_updated":"2023-08-07T08:00:48Z","file_name":"2023_JourGraphAlgorithms_Arroyo.pdf","date_created":"2023-08-07T08:00:48Z"}],"language":[{"iso":"eng"}],"publication_identifier":{"issn":["1526-1719"]},"publication_status":"published","related_material":{"record":[{"status":"public","id":"11185","relation":"earlier_version"}]},"issue":"6","volume":27,"ec_funded":1},{"quality_controlled":"1","publisher":"Society for Industrial and Applied Mathematics","oa":1,"date_published":"2023-01-01T00:00:00Z","doi":"10.1137/1.9781611977554.ch88","date_created":"2023-09-17T22:01:10Z","page":"2286-2323","day":"01","publication":"Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms","year":"2023","title":"Fast algorithms for solving the Hamilton cycle problem with high probability","author":[{"last_name":"Anastos","full_name":"Anastos, Michael","id":"0b2a4358-bb35-11ec-b7b9-e3279b593dbb","first_name":"Michael"}],"article_processing_charge":"No","external_id":{"arxiv":["2111.14759"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"chicago":"Anastos, Michael. “Fast Algorithms for Solving the Hamilton Cycle Problem with High Probability.” In Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms, 2023:2286–2323. Society for Industrial and Applied Mathematics, 2023. https://doi.org/10.1137/1.9781611977554.ch88.","ista":"Anastos M. 2023. Fast algorithms for solving the Hamilton cycle problem with high probability. Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms. SODA: Symposium on Discrete Algorithms vol. 2023, 2286–2323.","mla":"Anastos, Michael. “Fast Algorithms for Solving the Hamilton Cycle Problem with High Probability.” Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms, vol. 2023, Society for Industrial and Applied Mathematics, 2023, pp. 2286–323, doi:10.1137/1.9781611977554.ch88.","apa":"Anastos, M. (2023). Fast algorithms for solving the Hamilton cycle problem with high probability. In Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms (Vol. 2023, pp. 2286–2323). Florence, Italy: Society for Industrial and Applied Mathematics. https://doi.org/10.1137/1.9781611977554.ch88","ama":"Anastos M. Fast algorithms for solving the Hamilton cycle problem with high probability. In: Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms. Vol 2023. Society for Industrial and Applied Mathematics; 2023:2286-2323. doi:10.1137/1.9781611977554.ch88","short":"M. Anastos, in:, Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms, Society for Industrial and Applied Mathematics, 2023, pp. 2286–2323.","ieee":"M. Anastos, “Fast algorithms for solving the Hamilton cycle problem with high probability,” in Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms, Florence, Italy, 2023, vol. 2023, pp. 2286–2323."},"month":"01","intvolume":" 2023","scopus_import":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2111.14759"}],"oa_version":"Preprint","abstract":[{"text":"We study the Hamilton cycle problem with input a random graph G ~ G(n,p) in two different settings. In the first one, G is given to us in the form of randomly ordered adjacency lists while in the second one, we are given the adjacency matrix of G. In each of the two settings we derive a deterministic algorithm that w.h.p. either finds a Hamilton cycle or returns a certificate that such a cycle does not exist for p = p(n) ≥ 0. The running times of our algorithms are O(n) and respectively, each being best possible in its own setting.","lang":"eng"}],"volume":2023,"language":[{"iso":"eng"}],"publication_identifier":{"isbn":["9781611977554"]},"publication_status":"published","status":"public","type":"conference","conference":{"name":"SODA: Symposium on Discrete Algorithms","start_date":"2023-01-22","location":"Florence, Italy","end_date":"2023-01-25"},"_id":"14344","department":[{"_id":"MaKw"}],"date_updated":"2023-09-25T09:13:41Z"},{"author":[{"full_name":"Schamberger, Barbara","last_name":"Schamberger","first_name":"Barbara"},{"last_name":"Ziege","full_name":"Ziege, Ricardo","first_name":"Ricardo"},{"first_name":"Karine","last_name":"Anselme","full_name":"Anselme, Karine"},{"last_name":"Ben Amar","full_name":"Ben Amar, Martine","first_name":"Martine"},{"first_name":"Michał","full_name":"Bykowski, Michał","last_name":"Bykowski"},{"full_name":"Castro, André P.G.","last_name":"Castro","first_name":"André P.G."},{"first_name":"Amaia","full_name":"Cipitria, Amaia","last_name":"Cipitria"},{"last_name":"Coles","full_name":"Coles, Rhoslyn A.","first_name":"Rhoslyn A."},{"first_name":"Rumiana","full_name":"Dimova, Rumiana","last_name":"Dimova"},{"first_name":"Michaela","full_name":"Eder, Michaela","last_name":"Eder"},{"first_name":"Sebastian","full_name":"Ehrig, Sebastian","last_name":"Ehrig"},{"first_name":"Luis M.","full_name":"Escudero, Luis M.","last_name":"Escudero"},{"last_name":"Evans","full_name":"Evans, Myfanwy E.","first_name":"Myfanwy E."},{"first_name":"Paulo R.","last_name":"Fernandes","full_name":"Fernandes, Paulo R."},{"first_name":"Peter","full_name":"Fratzl, Peter","last_name":"Fratzl"},{"first_name":"Liesbet","last_name":"Geris","full_name":"Geris, Liesbet"},{"full_name":"Gierlinger, Notburga","last_name":"Gierlinger","first_name":"Notburga"},{"first_name":"Edouard B","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","full_name":"Hannezo, Edouard B","orcid":"0000-0001-6005-1561","last_name":"Hannezo"},{"full_name":"Iglič, Aleš","last_name":"Iglič","first_name":"Aleš"},{"first_name":"Jacob J.K.","last_name":"Kirkensgaard","full_name":"Kirkensgaard, Jacob J.K."},{"first_name":"Philip","full_name":"Kollmannsberger, Philip","last_name":"Kollmannsberger"},{"full_name":"Kowalewska, Łucja","last_name":"Kowalewska","first_name":"Łucja"},{"first_name":"Nicholas A.","full_name":"Kurniawan, Nicholas A.","last_name":"Kurniawan"},{"first_name":"Ioannis","last_name":"Papantoniou","full_name":"Papantoniou, Ioannis"},{"full_name":"Pieuchot, Laurent","last_name":"Pieuchot","first_name":"Laurent"},{"first_name":"Tiago H.V.","full_name":"Pires, Tiago H.V.","last_name":"Pires"},{"first_name":"Lars D.","full_name":"Renner, Lars D.","last_name":"Renner"},{"last_name":"Sageman-Furnas","full_name":"Sageman-Furnas, Andrew O.","first_name":"Andrew O."},{"first_name":"Gerd E.","full_name":"Schröder-Turk, Gerd E.","last_name":"Schröder-Turk"},{"first_name":"Anupam","full_name":"Sengupta, Anupam","last_name":"Sengupta"},{"last_name":"Sharma","full_name":"Sharma, Vikas R.","first_name":"Vikas R."},{"last_name":"Tagua","full_name":"Tagua, Antonio","first_name":"Antonio"},{"full_name":"Tomba, Caterina","last_name":"Tomba","first_name":"Caterina"},{"first_name":"Xavier","full_name":"Trepat, Xavier","last_name":"Trepat"},{"first_name":"Sarah L.","full_name":"Waters, Sarah L.","last_name":"Waters"},{"first_name":"Edwina F.","full_name":"Yeo, Edwina F.","last_name":"Yeo"},{"first_name":"Andreas","full_name":"Roschger, Andreas","last_name":"Roschger"},{"full_name":"Bidan, Cécile M.","last_name":"Bidan","first_name":"Cécile M."},{"full_name":"Dunlop, John W.C.","last_name":"Dunlop","first_name":"John W.C."}],"external_id":{"isi":["000941068900001"],"pmid":["36461812"]},"article_processing_charge":"No","title":"Curvature in biological systems: Its quantification, emergence, and implications across the scales","citation":{"chicago":"Schamberger, Barbara, Ricardo Ziege, Karine Anselme, Martine Ben Amar, Michał Bykowski, André P.G. Castro, Amaia Cipitria, et al. “Curvature in Biological Systems: Its Quantification, Emergence, and Implications across the Scales.” Advanced Materials. Wiley, 2023. https://doi.org/10.1002/adma.202206110.","ista":"Schamberger B, Ziege R, Anselme K, Ben Amar M, Bykowski M, Castro APG, Cipitria A, Coles RA, Dimova R, Eder M, Ehrig S, Escudero LM, Evans ME, Fernandes PR, Fratzl P, Geris L, Gierlinger N, Hannezo EB, Iglič A, Kirkensgaard JJK, Kollmannsberger P, Kowalewska Ł, Kurniawan NA, Papantoniou I, Pieuchot L, Pires THV, Renner LD, Sageman-Furnas AO, Schröder-Turk GE, Sengupta A, Sharma VR, Tagua A, Tomba C, Trepat X, Waters SL, Yeo EF, Roschger A, Bidan CM, Dunlop JWC. 2023. Curvature in biological systems: Its quantification, emergence, and implications across the scales. Advanced Materials. 35(13), 2206110.","mla":"Schamberger, Barbara, et al. “Curvature in Biological Systems: Its Quantification, Emergence, and Implications across the Scales.” Advanced Materials, vol. 35, no. 13, 2206110, Wiley, 2023, doi:10.1002/adma.202206110.","ama":"Schamberger B, Ziege R, Anselme K, et al. Curvature in biological systems: Its quantification, emergence, and implications across the scales. Advanced Materials. 2023;35(13). doi:10.1002/adma.202206110","apa":"Schamberger, B., Ziege, R., Anselme, K., Ben Amar, M., Bykowski, M., Castro, A. P. G., … Dunlop, J. W. C. (2023). Curvature in biological systems: Its quantification, emergence, and implications across the scales. Advanced Materials. Wiley. https://doi.org/10.1002/adma.202206110","short":"B. Schamberger, R. Ziege, K. Anselme, M. Ben Amar, M. Bykowski, A.P.G. Castro, A. Cipitria, R.A. Coles, R. Dimova, M. Eder, S. Ehrig, L.M. Escudero, M.E. Evans, P.R. Fernandes, P. Fratzl, L. Geris, N. Gierlinger, E.B. Hannezo, A. Iglič, J.J.K. Kirkensgaard, P. Kollmannsberger, Ł. Kowalewska, N.A. Kurniawan, I. Papantoniou, L. Pieuchot, T.H.V. Pires, L.D. Renner, A.O. Sageman-Furnas, G.E. Schröder-Turk, A. Sengupta, V.R. Sharma, A. Tagua, C. Tomba, X. Trepat, S.L. Waters, E.F. Yeo, A. Roschger, C.M. Bidan, J.W.C. Dunlop, Advanced Materials 35 (2023).","ieee":"B. Schamberger et al., “Curvature in biological systems: Its quantification, emergence, and implications across the scales,” Advanced Materials, vol. 35, no. 13. Wiley, 2023."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"2206110","doi":"10.1002/adma.202206110","date_published":"2023-03-29T00:00:00Z","date_created":"2023-03-05T23:01:06Z","has_accepted_license":"1","isi":1,"year":"2023","day":"29","publication":"Advanced Materials","publisher":"Wiley","quality_controlled":"1","oa":1,"acknowledgement":"B.S. and A.R. contributed equally to this work. A.P.G.C. and P.R.F. acknowledge the funding from Fundação para a Ciência e Tecnologia (Portugal), through IDMEC, under LAETA project UIDB/50022/2020. T.H.V.P. acknowledges the funding from Fundação para a Ciência e Tecnologia (Portugal), through Ph.D. Grant 2020.04417.BD. A.S. acknowledges that this work was partially supported by the ATTRACT Investigator Grant (no. A17/MS/11572821/MBRACE, to A.S.) from the Luxembourg National Research Fund. The author thanks Gerardo Ceada for his help in the graphical representations. N.A.K. acknowledges support from the European Research Council (grant 851960) and the Gravitation Program “Materials Driven Regeneration,” funded by the Netherlands Organization for Scientific Research (024.003.013). M.B.A. acknowledges support from the French National Research Agency (grant ANR-201-8-CE1-3-0008 for the project “Epimorph”). G.E.S.T. acknowledges funding by the Australian Research Council through project DP200102593. A.C. acknowledges the funding from the Deutsche Forschungsgemeinschaft (DFG) Emmy Noether Grant CI 203/-2 1, the Spanish Ministry of Science and Innovation (PID2021-123013O-BI00) and the IKERBASQUE Basque Foundation for Science.","file_date_updated":"2023-09-26T10:51:56Z","department":[{"_id":"EdHa"}],"date_updated":"2023-09-26T10:56:46Z","ddc":["570"],"type":"journal_article","article_type":"review","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"status":"public","_id":"12710","volume":35,"issue":"13","publication_identifier":{"eissn":["1521-4095"],"issn":["0935-9648"]},"publication_status":"published","file":[{"checksum":"5c04d68130e97a0ecd1ca27fbc15a246","file_id":"14373","success":1,"content_type":"application/pdf","access_level":"open_access","relation":"main_file","date_created":"2023-09-26T10:51:56Z","file_name":"2023_AdvancedMaterials_Schamberger.pdf","date_updated":"2023-09-26T10:51:56Z","file_size":2898063,"creator":"dernst"}],"language":[{"iso":"eng"}],"scopus_import":"1","month":"03","intvolume":" 35","abstract":[{"text":"Surface curvature both emerges from, and influences the behavior of, living objects at length scales ranging from cell membranes to single cells to tissues and organs. The relevance of surface curvature in biology is supported by numerous experimental and theoretical investigations in recent years. In this review, first, a brief introduction to the key ideas of surface curvature in the context of biological systems is given and the challenges that arise when measuring surface curvature are discussed. Giving an overview of the emergence of curvature in biological systems, its significance at different length scales becomes apparent. On the other hand, summarizing current findings also shows that both single cells and entire cell sheets, tissues or organisms respond to curvature by modulating their shape and their migration behavior. Finally, the interplay between the distribution of morphogens or micro-organisms and the emergence of curvature across length scales is addressed with examples demonstrating these key mechanistic principles of morphogenesis. Overall, this review highlights that curved interfaces are not merely a passive by-product of the chemical, biological, and mechanical processes but that curvature acts also as a signal that co-determines these processes.","lang":"eng"}],"oa_version":"Published Version","pmid":1},{"language":[{"iso":"eng"}],"publication_identifier":{"issn":["2469-990X"]},"publication_status":"published","issue":"6","volume":8,"oa_version":"Preprint","abstract":[{"lang":"eng","text":"Coherent flows of self-propelled particles are characterized by vortices and jets that sustain chaotic flows, referred to as active turbulence. Here, we reveal a crossover between defect-free active turbulence and active turbulence laden with topological defects. Interestingly, we show that concurrent to the crossover from defect-free to defect-laden active turbulence is the restoration of the previously broken SO(2) symmetry signaled by the fast decay of the two-point correlations. By stability analyses of the topological charge density field, we provide theoretical insights on the criterion for the crossover to the defect-laden active turbulent state. Despite the distinct symmetry features between these two active turbulence regimes, the flow fluctuations exhibit universal statistical scaling behaviors at large scales, while the spectrum of polarity fluctuations decays exponentially at small length scales compared to the active energy injection length. These findings reveal a dynamical crossover between distinct spatiotemporal organization patterns in polar active matter."}],"month":"06","intvolume":" 8","scopus_import":"1","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/2209.10916"}],"extern":"1","date_updated":"2023-10-03T07:25:39Z","_id":"14377","status":"public","keyword":["Fluid Flow and Transfer Processes","Modeling and Simulation","Computational Mechanics"],"article_type":"original","type":"journal_article","day":"14","publication":"Physical Review Fluids","year":"2023","doi":"10.1103/physrevfluids.8.063101","date_published":"2023-06-14T00:00:00Z","date_created":"2023-09-29T08:46:47Z","quality_controlled":"1","publisher":"American Physical Society","oa":1,"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ista":"Andersen BH, Renaud JB, Rønning J, Angheluta L, Doostmohammadi A. 2023. Symmetry-restoring crossover from defect-free to defect-laden turbulence in polar active matter. Physical Review Fluids. 8(6), 063101.","chicago":"Andersen, Benjamin H., Julian B Renaud, Jonas Rønning, Luiza Angheluta, and Amin Doostmohammadi. “Symmetry-Restoring Crossover from Defect-Free to Defect-Laden Turbulence in Polar Active Matter.” Physical Review Fluids. American Physical Society, 2023. https://doi.org/10.1103/physrevfluids.8.063101.","apa":"Andersen, B. H., Renaud, J. B., Rønning, J., Angheluta, L., & Doostmohammadi, A. (2023). Symmetry-restoring crossover from defect-free to defect-laden turbulence in polar active matter. Physical Review Fluids. American Physical Society. https://doi.org/10.1103/physrevfluids.8.063101","ama":"Andersen BH, Renaud JB, Rønning J, Angheluta L, Doostmohammadi A. Symmetry-restoring crossover from defect-free to defect-laden turbulence in polar active matter. Physical Review Fluids. 2023;8(6). doi:10.1103/physrevfluids.8.063101","short":"B.H. Andersen, J.B. Renaud, J. Rønning, L. Angheluta, A. Doostmohammadi, Physical Review Fluids 8 (2023).","ieee":"B. H. Andersen, J. B. Renaud, J. Rønning, L. Angheluta, and A. Doostmohammadi, “Symmetry-restoring crossover from defect-free to defect-laden turbulence in polar active matter,” Physical Review Fluids, vol. 8, no. 6. American Physical Society, 2023.","mla":"Andersen, Benjamin H., et al. “Symmetry-Restoring Crossover from Defect-Free to Defect-Laden Turbulence in Polar Active Matter.” Physical Review Fluids, vol. 8, no. 6, 063101, American Physical Society, 2023, doi:10.1103/physrevfluids.8.063101."},"title":"Symmetry-restoring crossover from defect-free to defect-laden turbulence in polar active matter","author":[{"last_name":"Andersen","full_name":"Andersen, Benjamin H.","first_name":"Benjamin H."},{"last_name":"Renaud","full_name":"Renaud, Julian B","first_name":"Julian B","id":"7af6767d-14eb-11ed-b536-a32449ae867c"},{"first_name":"Jonas","last_name":"Rønning","full_name":"Rønning, Jonas"},{"full_name":"Angheluta, Luiza","last_name":"Angheluta","first_name":"Luiza"},{"first_name":"Amin","last_name":"Doostmohammadi","full_name":"Doostmohammadi, Amin"}],"external_id":{"arxiv":["2209.10916"]},"article_processing_charge":"No","article_number":"063101"},{"acknowledgement":"We acknowledge funding from the European Union’s Horizon 2020 Research and Innovation Program [European Research Council grants 820008 (Ra.K.) and 101045223 (A.P.) and Marie Skłodowska-Curie grants 812868 (J.G.) and 101022777 (T.-P.R.)], the Academy of Finland [Center of Excellence Programme LIBER grant 346107 (A.P.), Flagship Programme PREIN grant 320165 (A.P.), and Postdoctoral Researcher grant 340103 (T.-P.R.)], Zuckerman STEM Leadership Program Fellowship (J.R.C.), President’s PhD Scholarship (M.O.), and the EPSRC [Established Career Fellowship grant EP/R00188X/1 (M.J.F.)].","publisher":"American Association for the Advancement of Science","quality_controlled":"1","oa":1,"year":"2023","day":"22","publication":"Science","page":"1357-1363","date_published":"2023-09-22T00:00:00Z","doi":"10.1126/science.adh9059","date_created":"2023-08-01T08:26:15Z","citation":{"mla":"Gemen, Julius, et al. “Disequilibrating Azoarenes by Visible-Light Sensitization under Confinement.” Science, vol. 381, no. 6664, American Association for the Advancement of Science, 2023, pp. 1357–63, doi:10.1126/science.adh9059.","apa":"Gemen, J., Church, J. R., Ruoko, T.-P., Durandin, N., Białek, M. J., Weissenfels, M., … Klajn, R. (2023). Disequilibrating azoarenes by visible-light sensitization under confinement. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.adh9059","ama":"Gemen J, Church JR, Ruoko T-P, et al. Disequilibrating azoarenes by visible-light sensitization under confinement. Science. 2023;381(6664):1357-1363. doi:10.1126/science.adh9059","ieee":"J. Gemen et al., “Disequilibrating azoarenes by visible-light sensitization under confinement,” Science, vol. 381, no. 6664. American Association for the Advancement of Science, pp. 1357–1363, 2023.","short":"J. Gemen, J.R. Church, T.-P. Ruoko, N. Durandin, M.J. Białek, M. Weissenfels, M. Feller, M. Kazes, V.A. Borin, M. Odaybat, R. Kalepu, Y. Diskin-Posner, D. Oron, M.J. Fuchter, A. Priimagi, I. Schapiro, R. Klajn, Science 381 (2023) 1357–1363.","chicago":"Gemen, Julius, Jonathan R. Church, Tero-Petri Ruoko, Nikita Durandin, Michał J. Białek, Maren Weissenfels, Moran Feller, et al. “Disequilibrating Azoarenes by Visible-Light Sensitization under Confinement.” Science. American Association for the Advancement of Science, 2023. https://doi.org/10.1126/science.adh9059.","ista":"Gemen J, Church JR, Ruoko T-P, Durandin N, Białek MJ, Weissenfels M, Feller M, Kazes M, Borin VA, Odaybat M, Kalepu R, Diskin-Posner Y, Oron D, Fuchter MJ, Priimagi A, Schapiro I, Klajn R. 2023. Disequilibrating azoarenes by visible-light sensitization under confinement. Science. 381(6664), 1357–1363."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"first_name":"Julius","full_name":"Gemen, Julius","last_name":"Gemen"},{"full_name":"Church, Jonathan R.","last_name":"Church","first_name":"Jonathan R."},{"full_name":"Ruoko, Tero-Petri","last_name":"Ruoko","first_name":"Tero-Petri"},{"first_name":"Nikita","full_name":"Durandin, Nikita","last_name":"Durandin"},{"last_name":"Białek","full_name":"Białek, Michał J.","first_name":"Michał J."},{"first_name":"Maren","last_name":"Weissenfels","full_name":"Weissenfels, Maren"},{"last_name":"Feller","full_name":"Feller, Moran","first_name":"Moran"},{"full_name":"Kazes, Miri","last_name":"Kazes","first_name":"Miri"},{"first_name":"Veniamin A.","full_name":"Borin, Veniamin A.","last_name":"Borin"},{"first_name":"Magdalena","last_name":"Odaybat","full_name":"Odaybat, Magdalena"},{"first_name":"Rishir","last_name":"Kalepu","full_name":"Kalepu, Rishir"},{"first_name":"Yael","full_name":"Diskin-Posner, Yael","last_name":"Diskin-Posner"},{"full_name":"Oron, Dan","last_name":"Oron","first_name":"Dan"},{"first_name":"Matthew J.","full_name":"Fuchter, Matthew J.","last_name":"Fuchter"},{"first_name":"Arri","last_name":"Priimagi","full_name":"Priimagi, Arri"},{"full_name":"Schapiro, Igor","last_name":"Schapiro","first_name":"Igor"},{"full_name":"Klajn, Rafal","last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","first_name":"Rafal"}],"article_processing_charge":"No","title":"Disequilibrating azoarenes by visible-light sensitization under confinement","abstract":[{"lang":"eng","text":"Photoisomerization of azobenzenes from their stable E isomer to the metastable Z state is the basis of numerous applications of these molecules. However, this reaction typically requires ultraviolet light, which limits applicability. In this study, we introduce disequilibration by sensitization under confinement (DESC), a supramolecular approach to induce the E-to-Z isomerization by using light of a desired color, including red. DESC relies on a combination of a macrocyclic host and a photosensitizer, which act together to selectively bind and sensitize E-azobenzenes for isomerization. The Z isomer lacks strong affinity for and is expelled from the host, which can then convert additional E-azobenzenes to the Z state. In this way, the host–photosensitizer complex converts photon energy into chemical energy in the form of out-of-equilibrium photostationary states, including ones that cannot be accessed through direct photoexcitation."}],"oa_version":"Preprint","scopus_import":"1","main_file_link":[{"url":"https://doi.org/10.26434/chemrxiv-2023-gq2h0","open_access":"1"}],"month":"09","intvolume":" 381","publication_identifier":{"eissn":["1095-9203"]},"publication_status":"published","language":[{"iso":"eng"}],"issue":"6664","volume":381,"_id":"13340","type":"journal_article","article_type":"original","status":"public","date_updated":"2023-10-03T08:11:26Z","department":[{"_id":"RaKl"}]},{"date_created":"2023-03-05T23:01:05Z","date_published":"2023-02-21T00:00:00Z","doi":"10.1063/5.0134271","publication":"Journal of Chemical Physics","day":"21","year":"2023","isi":1,"oa":1,"quality_controlled":"1","publisher":"American Institute of Physics","acknowledgement":"We thank Michael Lang for helpful discussions. We acknowledge financial support from the European Research Council (ERC Consolidator Grant No. 681597, MIMIC) and from LabEx NUMEV (Grant No. ANR-10-LABX-20) funded by the “Investissements d’Avenir” French Government program, managed by the French National Research Agency (ANR). W.K. is a senior member of the Institut Universitaire de France.","title":"Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks","external_id":{"arxiv":["2211.04810"],"isi":["000936943800002"],"pmid":["36813705"]},"article_processing_charge":"No","author":[{"id":"ef8a92cb-c7b6-11ec-8bea-e1fd5847bc5b","first_name":"Valerio","last_name":"Sorichetti","orcid":"0000-0002-9645-6576","full_name":"Sorichetti, Valerio"},{"full_name":"Ninarello, Andrea","last_name":"Ninarello","first_name":"Andrea"},{"last_name":"Ruiz-Franco","full_name":"Ruiz-Franco, José","first_name":"José"},{"last_name":"Hugouvieux","full_name":"Hugouvieux, Virginie","first_name":"Virginie"},{"last_name":"Zaccarelli","full_name":"Zaccarelli, Emanuela","first_name":"Emanuela"},{"first_name":"Cristian","full_name":"Micheletti, Cristian","last_name":"Micheletti"},{"first_name":"Walter","full_name":"Kob, Walter","last_name":"Kob"},{"first_name":"Lorenzo","last_name":"Rovigatti","full_name":"Rovigatti, Lorenzo"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ieee":"V. Sorichetti et al., “Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks,” Journal of Chemical Physics, vol. 158, no. 7. American Institute of Physics, 2023.","short":"V. Sorichetti, A. Ninarello, J. Ruiz-Franco, V. Hugouvieux, E. Zaccarelli, C. Micheletti, W. Kob, L. Rovigatti, Journal of Chemical Physics 158 (2023).","apa":"Sorichetti, V., Ninarello, A., Ruiz-Franco, J., Hugouvieux, V., Zaccarelli, E., Micheletti, C., … Rovigatti, L. (2023). Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks. Journal of Chemical Physics. American Institute of Physics. https://doi.org/10.1063/5.0134271","ama":"Sorichetti V, Ninarello A, Ruiz-Franco J, et al. Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks. Journal of Chemical Physics. 2023;158(7). doi:10.1063/5.0134271","mla":"Sorichetti, Valerio, et al. “Structure and Elasticity of Model Disordered, Polydisperse, and Defect-Free Polymer Networks.” Journal of Chemical Physics, vol. 158, no. 7, 074905, American Institute of Physics, 2023, doi:10.1063/5.0134271.","ista":"Sorichetti V, Ninarello A, Ruiz-Franco J, Hugouvieux V, Zaccarelli E, Micheletti C, Kob W, Rovigatti L. 2023. Structure and elasticity of model disordered, polydisperse, and defect-free polymer networks. Journal of Chemical Physics. 158(7), 074905.","chicago":"Sorichetti, Valerio, Andrea Ninarello, José Ruiz-Franco, Virginie Hugouvieux, Emanuela Zaccarelli, Cristian Micheletti, Walter Kob, and Lorenzo Rovigatti. “Structure and Elasticity of Model Disordered, Polydisperse, and Defect-Free Polymer Networks.” Journal of Chemical Physics. American Institute of Physics, 2023. https://doi.org/10.1063/5.0134271."},"article_number":"074905","issue":"7","volume":158,"language":[{"iso":"eng"}],"publication_status":"published","publication_identifier":{"eissn":["1089-7690"],"issn":["0021-9606"]},"intvolume":" 158","month":"02","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.2211.04810"}],"scopus_import":"1","oa_version":"Preprint","pmid":1,"abstract":[{"text":"The elasticity of disordered and polydisperse polymer networks is a fundamental problem of soft matter physics that is still open. Here, we self-assemble polymer networks via simulations of a mixture of bivalent and tri- or tetravalent patchy particles, which result in an exponential strand length distribution analogous to that of experimental randomly cross-linked systems. After assembly, the network connectivity and topology are frozen and the resulting system is characterized. We find that the fractal structure of the network depends on the number density at which the assembly has been carried out, but that systems with the same mean valence and same assembly density have the same structural properties. Moreover, we compute the long-time limit of the mean-squared displacement, also known as the (squared) localization length, of the cross-links and of the middle monomers of the strands, showing that the dynamics of long strands is well described by the tube model. Finally, we find a relation connecting these two localization lengths at high density and connect the cross-link localization length to the shear modulus of the system.","lang":"eng"}],"department":[{"_id":"AnSa"}],"date_updated":"2023-10-03T11:31:51Z","status":"public","article_type":"original","type":"journal_article","_id":"12705"},{"author":[{"last_name":"Chatterjee","full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","first_name":"Krishnendu"},{"last_name":"Katoen","full_name":"Katoen, Joost P","first_name":"Joost P","id":"4524F760-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Stefanie","full_name":"Mohr, Stefanie","last_name":"Mohr"},{"first_name":"Maximilian","full_name":"Weininger, Maximilian","last_name":"Weininger"},{"first_name":"Tobias","last_name":"Winkler","full_name":"Winkler, Tobias"}],"external_id":{"isi":["000946174300001"]},"article_processing_charge":"No","title":"Stochastic games with lexicographic objectives","citation":{"ista":"Chatterjee K, Katoen JP, Mohr S, Weininger M, Winkler T. 2023. Stochastic games with lexicographic objectives. Formal Methods in System Design.","chicago":"Chatterjee, Krishnendu, Joost P Katoen, Stefanie Mohr, Maximilian Weininger, and Tobias Winkler. “Stochastic Games with Lexicographic Objectives.” Formal Methods in System Design. Springer Nature, 2023. https://doi.org/10.1007/s10703-023-00411-4.","short":"K. Chatterjee, J.P. Katoen, S. Mohr, M. Weininger, T. Winkler, Formal Methods in System Design (2023).","ieee":"K. Chatterjee, J. P. Katoen, S. Mohr, M. Weininger, and T. Winkler, “Stochastic games with lexicographic objectives,” Formal Methods in System Design. Springer Nature, 2023.","apa":"Chatterjee, K., Katoen, J. P., Mohr, S., Weininger, M., & Winkler, T. (2023). Stochastic games with lexicographic objectives. Formal Methods in System Design. Springer Nature. https://doi.org/10.1007/s10703-023-00411-4","ama":"Chatterjee K, Katoen JP, Mohr S, Weininger M, Winkler T. Stochastic games with lexicographic objectives. Formal Methods in System Design. 2023. doi:10.1007/s10703-023-00411-4","mla":"Chatterjee, Krishnendu, et al. “Stochastic Games with Lexicographic Objectives.” Formal Methods in System Design, Springer Nature, 2023, doi:10.1007/s10703-023-00411-4."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","project":[{"name":"Formal Methods for Stochastic Models: Algorithms and Applications","grant_number":"863818","call_identifier":"H2020","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E"},{"_id":"25892FC0-B435-11E9-9278-68D0E5697425","grant_number":"ICT15-003","name":"Efficient Algorithms for Computer Aided Verification"}],"date_published":"2023-03-08T00:00:00Z","doi":"10.1007/s10703-023-00411-4","date_created":"2023-03-19T23:00:59Z","isi":1,"year":"2023","day":"08","publication":"Formal Methods in System Design","quality_controlled":"1","publisher":"Springer Nature","oa":1,"acknowledgement":"Tobias Winkler and Joost-Pieter Katoen are supported by the DFG RTG 2236 UnRAVeL and the innovation programme under the Marie Skłodowska-Curie grant agreement No. 101008233 (Mission). Krishnendu Chatterjee is supported by the ERC CoG 863818 (ForM-SMArt) and the Vienna Science and Technology Fund (WWTF) Project ICT15-003. Maximilian Weininger is supported by the DFG projects 383882557 Statistical Unbounded Verification (SUV) and 427755713 Group-By Objectives in Probabilistic Verification (GOPro). Stefanie Mohr is supported by the DFG RTG 2428 CONVEY. Open Access funding enabled and organized by Projekt DEAL.","department":[{"_id":"KrCh"}],"date_updated":"2023-10-03T11:36:13Z","ddc":["000"],"type":"journal_article","article_type":"original","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"status":"public","_id":"12738","related_material":{"record":[{"id":"8272","status":"public","relation":"earlier_version"}]},"ec_funded":1,"publication_identifier":{"eissn":["1572-8102"]},"publication_status":"epub_ahead","language":[{"iso":"eng"}],"scopus_import":"1","main_file_link":[{"url":"https://doi.org/10.1007/s10703-023-00411-4","open_access":"1"}],"month":"03","abstract":[{"lang":"eng","text":"We study turn-based stochastic zero-sum games with lexicographic preferences over objectives. Stochastic games are standard models in control, verification, and synthesis of stochastic reactive systems that exhibit both randomness as well as controllable and adversarial non-determinism. Lexicographic order allows one to consider multiple objectives with a strict preference order. To the best of our knowledge, stochastic games with lexicographic objectives have not been studied before. For a mixture of reachability and safety objectives, we show that deterministic lexicographically optimal strategies exist and memory is only required to remember the already satisfied and violated objectives. For a constant number of objectives, we show that the relevant decision problem is in NP∩coNP, matching the current known bound for single objectives; and in general the decision problem is PSPACE-hard and can be solved in NEXPTIME∩coNEXPTIME. We present an algorithm that computes the lexicographically optimal strategies via a reduction to the computation of optimal strategies in a sequence of single-objectives games. For omega-regular objectives, we restrict our analysis to one-player games, also known as Markov decision processes. We show that lexicographically optimal strategies exist and need either randomization or finite memory. We present an algorithm that solves the relevant decision problem in polynomial time. We have implemented our algorithms and report experimental results on various case studies."}],"oa_version":"Published Version"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["570"],"citation":{"short":"M.C. Ucar, (2023).","ieee":"M. C. Ucar, “Source data for the manuscript ‘CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration.’” Zenodo, 2023.","apa":"Ucar, M. C. (2023). Source data for the manuscript “CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration.” Zenodo. https://doi.org/10.5281/ZENODO.8133960","ama":"Ucar MC. Source data for the manuscript “CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration.” 2023. doi:10.5281/ZENODO.8133960","mla":"Ucar, Mehmet C. Source Data for the Manuscript “CCR7 Acts as Both a Sensor and a Sink for CCL19 to Coordinate Collective Leukocyte Migration.” Zenodo, 2023, doi:10.5281/ZENODO.8133960.","ista":"Ucar MC. 2023. Source data for the manuscript ‘CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration’, Zenodo, 10.5281/ZENODO.8133960.","chicago":"Ucar, Mehmet C. “Source Data for the Manuscript ‘CCR7 Acts as Both a Sensor and a Sink for CCL19 to Coordinate Collective Leukocyte Migration.’” Zenodo, 2023. https://doi.org/10.5281/ZENODO.8133960."},"date_updated":"2023-10-03T11:42:58Z","title":"Source data for the manuscript \"CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration\"","department":[{"_id":"EdHa"}],"article_processing_charge":"No","author":[{"first_name":"Mehmet C","id":"50B2A802-6007-11E9-A42B-EB23E6697425","last_name":"Ucar","full_name":"Ucar, Mehmet C","orcid":"0000-0003-0506-4217"}],"_id":"14279","status":"public","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"type":"research_data_reference","day":"11","year":"2023","has_accepted_license":"1","date_created":"2023-09-06T08:39:25Z","date_published":"2023-07-11T00:00:00Z","related_material":{"record":[{"relation":"used_in_publication","id":"14274","status":"public"}]},"doi":"10.5281/ZENODO.8133960","oa_version":"Published Version","abstract":[{"text":"The zip file includes source data used in the manuscript \"CCR7 acts as both a sensor and a sink for CCL19 to coordinate collective leukocyte migration\", as well as a representative Jupyter notebook to reproduce the main figures. Please see the preprint on bioRxiv and the DOI link there to access the final published version. Note the title change between the preprint and the published manuscript.\r\nA sample script for particle-based simulations of collective chemotaxis by self-generated gradients is also included (see Self-generated_chemotaxis_sample_script.ipynb) to generate exemplary cell trajectories. A detailed description of the simulation setup is provided in the supplementary information of the manuscipt.","lang":"eng"}],"month":"07","oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/zenodo.8133960"}],"publisher":"Zenodo"},{"project":[{"grant_number":"338804","name":"Random matrices, universality and disordered quantum systems","call_identifier":"FP7","_id":"258DCDE6-B435-11E9-9278-68D0E5697425"},{"call_identifier":"H2020","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","grant_number":"665385","name":"International IST Doctoral Program"}],"external_id":{"isi":["000724652500001"],"arxiv":["1912.04100"]},"article_processing_charge":"Yes (via OA deal)","author":[{"orcid":"0000-0002-4901-7992","full_name":"Cipolloni, Giorgio","last_name":"Cipolloni","first_name":"Giorgio","id":"42198EFA-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Erdös, László","orcid":"0000-0001-5366-9603","last_name":"Erdös","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","first_name":"László"},{"orcid":"0000-0002-2904-1856","full_name":"Schröder, Dominik J","last_name":"Schröder","id":"408ED176-F248-11E8-B48F-1D18A9856A87","first_name":"Dominik J"}],"title":"Central limit theorem for linear eigenvalue statistics of non-Hermitian random matrices","citation":{"ista":"Cipolloni G, Erdös L, Schröder DJ. 2023. Central limit theorem for linear eigenvalue statistics of non-Hermitian random matrices. Communications on Pure and Applied Mathematics. 76(5), 946–1034.","chicago":"Cipolloni, Giorgio, László Erdös, and Dominik J Schröder. “Central Limit Theorem for Linear Eigenvalue Statistics of Non-Hermitian Random Matrices.” Communications on Pure and Applied Mathematics. Wiley, 2023. https://doi.org/10.1002/cpa.22028.","ama":"Cipolloni G, Erdös L, Schröder DJ. Central limit theorem for linear eigenvalue statistics of non-Hermitian random matrices. Communications on Pure and Applied Mathematics. 2023;76(5):946-1034. doi:10.1002/cpa.22028","apa":"Cipolloni, G., Erdös, L., & Schröder, D. J. (2023). Central limit theorem for linear eigenvalue statistics of non-Hermitian random matrices. Communications on Pure and Applied Mathematics. Wiley. https://doi.org/10.1002/cpa.22028","ieee":"G. Cipolloni, L. Erdös, and D. J. Schröder, “Central limit theorem for linear eigenvalue statistics of non-Hermitian random matrices,” Communications on Pure and Applied Mathematics, vol. 76, no. 5. Wiley, pp. 946–1034, 2023.","short":"G. Cipolloni, L. Erdös, D.J. Schröder, Communications on Pure and Applied Mathematics 76 (2023) 946–1034.","mla":"Cipolloni, Giorgio, et al. “Central Limit Theorem for Linear Eigenvalue Statistics of Non-Hermitian Random Matrices.” Communications on Pure and Applied Mathematics, vol. 76, no. 5, Wiley, 2023, pp. 946–1034, doi:10.1002/cpa.22028."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa":1,"quality_controlled":"1","publisher":"Wiley","acknowledgement":"L.E. would like to thank Nathanaël Berestycki and D.S.would like to thank Nina Holden for valuable discussions on the Gaussian freefield.G.C. and L.E. are partially supported by ERC Advanced Grant No. 338804.G.C. received funding from the European Union’s Horizon 2020 research and in-novation programme under the Marie Skłodowska-Curie Grant Agreement No.665385. D.S. is supported by Dr. Max Rössler, the Walter Haefner Foundation, and the ETH Zürich Foundation.","page":"946-1034","date_created":"2021-12-05T23:01:41Z","date_published":"2023-05-01T00:00:00Z","doi":"10.1002/cpa.22028","year":"2023","isi":1,"has_accepted_license":"1","publication":"Communications on Pure and Applied Mathematics","day":"01","tmp":{"short":"CC BY-NC-ND (4.0)","name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","image":"/images/cc_by_nc_nd.png"},"type":"journal_article","article_type":"original","status":"public","_id":"10405","file_date_updated":"2023-10-04T09:21:48Z","department":[{"_id":"LaEr"}],"date_updated":"2023-10-04T09:22:55Z","ddc":["510"],"scopus_import":"1","intvolume":" 76","month":"05","abstract":[{"text":"We consider large non-Hermitian random matrices X with complex, independent, identically distributed centred entries and show that the linear statistics of their eigenvalues are asymptotically Gaussian for test functions having 2+ϵ derivatives. Previously this result was known only for a few special cases; either the test functions were required to be analytic [72], or the distribution of the matrix elements needed to be Gaussian [73], or at least match the Gaussian up to the first four moments [82, 56]. We find the exact dependence of the limiting variance on the fourth cumulant that was not known before. The proof relies on two novel ingredients: (i) a local law for a product of two resolvents of the Hermitisation of X with different spectral parameters and (ii) a coupling of several weakly dependent Dyson Brownian motions. These methods are also the key inputs for our analogous results on the linear eigenvalue statistics of real matrices X that are presented in the companion paper [32]. ","lang":"eng"}],"oa_version":"Published Version","ec_funded":1,"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","volume":76,"issue":"5","publication_status":"published","publication_identifier":{"issn":["0010-3640"],"eissn":["1097-0312"]},"language":[{"iso":"eng"}],"file":[{"file_name":"2023_CommPureMathematics_Cipolloni.pdf","date_created":"2023-10-04T09:21:48Z","file_size":803440,"date_updated":"2023-10-04T09:21:48Z","creator":"dernst","success":1,"checksum":"8346bc2642afb4ccb7f38979f41df5d9","file_id":"14388","content_type":"application/pdf","relation":"main_file","access_level":"open_access"}]},{"file_date_updated":"2022-02-21T08:54:17Z","department":[{"_id":"KrCh"}],"date_updated":"2023-10-04T09:24:30Z","ddc":["000"],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"type":"journal_article","article_type":"original","status":"public","_id":"10770","ec_funded":1,"volume":13,"publication_status":"published","publication_identifier":{"issn":["2153-0785"],"eissn":["2153-0793"]},"language":[{"iso":"eng"}],"file":[{"relation":"main_file","access_level":"open_access","content_type":"application/pdf","success":1,"checksum":"cd53b07e96f9030ddb348f305e5b58c7","file_id":"10781","creator":"dernst","file_size":1890512,"date_updated":"2022-02-21T08:54:17Z","file_name":"2022_DynamicGamesApplic_Graham.pdf","date_created":"2022-02-21T08:54:17Z"}],"scopus_import":"1","intvolume":" 13","month":"03","abstract":[{"lang":"eng","text":"Mathematical models often aim to describe a complicated mechanism in a cohesive and simple manner. However, reaching perfect balance between being simple enough or overly simplistic is a challenging task. Frequently, game-theoretic models have an underlying assumption that players, whenever they choose to execute a specific action, do so perfectly. In fact, it is rare that action execution perfectly coincides with intentions of individuals, giving rise to behavioural mistakes. The concept of incompetence of players was suggested to address this issue in game-theoretic settings. Under the assumption of incompetence, players have non-zero probabilities of executing a different strategy from the one they chose, leading to stochastic outcomes of the interactions. In this article, we survey results related to the concept of incompetence in classic as well as evolutionary game theory and provide several new results. We also suggest future extensions of the model and argue why it is important to take into account behavioural mistakes when analysing interactions among players in both economic and biological settings."}],"oa_version":"Published Version","article_processing_charge":"No","external_id":{"isi":["000753777100001"]},"author":[{"full_name":"Graham, Thomas","last_name":"Graham","first_name":"Thomas"},{"full_name":"Kleshnina, Maria","last_name":"Kleshnina","id":"4E21749C-F248-11E8-B48F-1D18A9856A87","first_name":"Maria"},{"last_name":"Filar","full_name":"Filar, Jerzy A.","first_name":"Jerzy A."}],"title":"Where do mistakes lead? A survey of games with incompetent players","citation":{"mla":"Graham, Thomas, et al. “Where Do Mistakes Lead? A Survey of Games with Incompetent Players.” Dynamic Games and Applications, vol. 13, Springer Nature, 2023, pp. 231–64, doi:10.1007/s13235-022-00425-3.","apa":"Graham, T., Kleshnina, M., & Filar, J. A. (2023). Where do mistakes lead? A survey of games with incompetent players. Dynamic Games and Applications. Springer Nature. https://doi.org/10.1007/s13235-022-00425-3","ama":"Graham T, Kleshnina M, Filar JA. Where do mistakes lead? A survey of games with incompetent players. Dynamic Games and Applications. 2023;13:231-264. doi:10.1007/s13235-022-00425-3","short":"T. Graham, M. Kleshnina, J.A. Filar, Dynamic Games and Applications 13 (2023) 231–264.","ieee":"T. Graham, M. Kleshnina, and J. A. Filar, “Where do mistakes lead? A survey of games with incompetent players,” Dynamic Games and Applications, vol. 13. Springer Nature, pp. 231–264, 2023.","chicago":"Graham, Thomas, Maria Kleshnina, and Jerzy A. Filar. “Where Do Mistakes Lead? A Survey of Games with Incompetent Players.” Dynamic Games and Applications. Springer Nature, 2023. https://doi.org/10.1007/s13235-022-00425-3.","ista":"Graham T, Kleshnina M, Filar JA. 2023. Where do mistakes lead? A survey of games with incompetent players. Dynamic Games and Applications. 13, 231–264."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","project":[{"name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425"}],"page":"231-264","date_created":"2022-02-20T23:01:32Z","doi":"10.1007/s13235-022-00425-3","date_published":"2023-03-01T00:00:00Z","year":"2023","isi":1,"has_accepted_license":"1","publication":"Dynamic Games and Applications","day":"01","oa":1,"quality_controlled":"1","publisher":"Springer Nature","acknowledgement":"The authors would like to acknowledge stimulating email discussions with Dr Wayne Lobb of W.A. Lobb LLC on the topic of evolutionary games. We also thank Dr Thomas Taimre for his input to the material in Sect. 3.\r\nThe authors would like to acknowledge partial support from the Australian Research Council under the Discovery grant DP180101602 and support by the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie Grant Agreement #754411."},{"project":[{"_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854","name":"IST Austria Open Access Fund"},{"grant_number":"F6504","name":"Taming Complexity in Partial Differential Systems","_id":"fc31cba2-9c52-11eb-aca3-ff467d239cd2"},{"call_identifier":"H2020","_id":"256E75B8-B435-11E9-9278-68D0E5697425","name":"Optimal Transport and Stochastic Dynamics","grant_number":"716117"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"mla":"Dello Schiavo, Lorenzo. “Ergodic Decomposition of Dirichlet Forms via Direct Integrals and Applications.” Potential Analysis, vol. 58, Springer Nature, 2023, pp. 573–615, doi:10.1007/s11118-021-09951-y.","ieee":"L. Dello Schiavo, “Ergodic decomposition of Dirichlet forms via direct integrals and applications,” Potential Analysis, vol. 58. Springer Nature, pp. 573–615, 2023.","short":"L. Dello Schiavo, Potential Analysis 58 (2023) 573–615.","apa":"Dello Schiavo, L. (2023). Ergodic decomposition of Dirichlet forms via direct integrals and applications. Potential Analysis. Springer Nature. https://doi.org/10.1007/s11118-021-09951-y","ama":"Dello Schiavo L. Ergodic decomposition of Dirichlet forms via direct integrals and applications. Potential Analysis. 2023;58:573-615. doi:10.1007/s11118-021-09951-y","chicago":"Dello Schiavo, Lorenzo. “Ergodic Decomposition of Dirichlet Forms via Direct Integrals and Applications.” Potential Analysis. Springer Nature, 2023. https://doi.org/10.1007/s11118-021-09951-y.","ista":"Dello Schiavo L. 2023. Ergodic decomposition of Dirichlet forms via direct integrals and applications. Potential Analysis. 58, 573–615."},"title":"Ergodic decomposition of Dirichlet forms via direct integrals and applications","author":[{"full_name":"Dello Schiavo, Lorenzo","orcid":"0000-0002-9881-6870","last_name":"Dello Schiavo","first_name":"Lorenzo","id":"ECEBF480-9E4F-11EA-B557-B0823DDC885E"}],"article_processing_charge":"Yes (via OA deal)","external_id":{"arxiv":["2003.01366"],"isi":["000704213400001"]},"acknowledgement":"The author is grateful to Professors Sergio Albeverio and Andreas Eberle, and to Dr. Kohei Suzuki, for fruitful conversations on the subject of the present work, and for respectively pointing out the references [1, 13], and [3, 20]. Finally, he is especially grateful to an anonymous Reviewer for their very careful reading and their suggestions which improved the readability of the paper.","publisher":"Springer Nature","quality_controlled":"1","oa":1,"day":"01","publication":"Potential Analysis","isi":1,"has_accepted_license":"1","year":"2023","date_published":"2023-03-01T00:00:00Z","doi":"10.1007/s11118-021-09951-y","date_created":"2021-10-17T22:01:17Z","page":"573-615","_id":"10145","status":"public","article_type":"original","type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"ddc":["510"],"date_updated":"2023-10-04T09:19:12Z","department":[{"_id":"JaMa"}],"file_date_updated":"2023-10-04T09:18:59Z","oa_version":"Published Version","abstract":[{"text":"We study direct integrals of quadratic and Dirichlet forms. We show that each quasi-regular Dirichlet space over a probability space admits a unique representation as a direct integral of irreducible Dirichlet spaces, quasi-regular for the same underlying topology. The same holds for each quasi-regular strongly local Dirichlet space over a metrizable Luzin σ-finite Radon measure space, and admitting carré du champ operator. In this case, the representation is only projectively unique.","lang":"eng"}],"month":"03","intvolume":" 58","scopus_import":"1","file":[{"file_name":"2023_PotentialAnalysis_DelloSchiavo.pdf","date_created":"2023-10-04T09:18:59Z","file_size":806391,"date_updated":"2023-10-04T09:18:59Z","creator":"dernst","success":1,"checksum":"625526482be300ca7281c91c30d41725","file_id":"14387","content_type":"application/pdf","relation":"main_file","access_level":"open_access"}],"language":[{"iso":"eng"}],"publication_identifier":{"issn":["0926-2601"],"eissn":["1572-929X"]},"publication_status":"published","volume":58,"ec_funded":1},{"publisher":"Oxford University Press","quality_controlled":"1","oa":1,"year":"2023","day":"01","publication":"The Plant Cell","doi":"10.1093/plcell/koac346","date_published":"2023-06-01T00:00:00Z","date_created":"2023-02-23T09:14:59Z","article_number":"koac346","citation":{"mla":"Manavella, Pablo A., et al. “Beyond Transcription: Compelling Open Questions in Plant RNA Biology.” The Plant Cell, vol. 35, no. 6, koac346, Oxford University Press, 2023, doi:10.1093/plcell/koac346.","ama":"Manavella PA, Godoy Herz MA, Kornblihtt AR, et al. Beyond transcription: compelling open questions in plant RNA biology. The Plant Cell. 2023;35(6). doi:10.1093/plcell/koac346","apa":"Manavella, P. A., Godoy Herz, M. A., Kornblihtt, A. R., Sorenson, R., Sieburth, L. E., Nakaminami, K., … Pikaard, C. S. (2023). Beyond transcription: compelling open questions in plant RNA biology. The Plant Cell. Oxford University Press. https://doi.org/10.1093/plcell/koac346","ieee":"P. A. Manavella et al., “Beyond transcription: compelling open questions in plant RNA biology,” The Plant Cell, vol. 35, no. 6. Oxford University Press, 2023.","short":"P.A. Manavella, M.A. Godoy Herz, A.R. Kornblihtt, R. Sorenson, L.E. Sieburth, K. Nakaminami, M. Seki, Y. Ding, Q. Sun, H. Kang, F.D. Ariel, M. Crespi, A.J. Giudicatti, Q. Cai, H. Jin, X. Feng, Y. Qi, C.S. Pikaard, The Plant Cell 35 (2023).","chicago":"Manavella, Pablo A, Micaela A Godoy Herz, Alberto R Kornblihtt, Reed Sorenson, Leslie E Sieburth, Kentaro Nakaminami, Motoaki Seki, et al. “Beyond Transcription: Compelling Open Questions in Plant RNA Biology.” The Plant Cell. Oxford University Press, 2023. https://doi.org/10.1093/plcell/koac346.","ista":"Manavella PA, Godoy Herz MA, Kornblihtt AR, Sorenson R, Sieburth LE, Nakaminami K, Seki M, Ding Y, Sun Q, Kang H, Ariel FD, Crespi M, Giudicatti AJ, Cai Q, Jin H, Feng X, Qi Y, Pikaard CS. 2023. Beyond transcription: compelling open questions in plant RNA biology. The Plant Cell. 35(6), koac346."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"full_name":"Manavella, Pablo A","last_name":"Manavella","first_name":"Pablo A"},{"last_name":"Godoy Herz","full_name":"Godoy Herz, Micaela A","first_name":"Micaela A"},{"first_name":"Alberto R","full_name":"Kornblihtt, Alberto R","last_name":"Kornblihtt"},{"first_name":"Reed","full_name":"Sorenson, Reed","last_name":"Sorenson"},{"last_name":"Sieburth","full_name":"Sieburth, Leslie E","first_name":"Leslie E"},{"full_name":"Nakaminami, Kentaro","last_name":"Nakaminami","first_name":"Kentaro"},{"last_name":"Seki","full_name":"Seki, Motoaki","first_name":"Motoaki"},{"full_name":"Ding, Yiliang","last_name":"Ding","first_name":"Yiliang"},{"first_name":"Qianwen","last_name":"Sun","full_name":"Sun, Qianwen"},{"first_name":"Hunseung","full_name":"Kang, Hunseung","last_name":"Kang"},{"full_name":"Ariel, Federico D","last_name":"Ariel","first_name":"Federico D"},{"full_name":"Crespi, Martin","last_name":"Crespi","first_name":"Martin"},{"first_name":"Axel J","full_name":"Giudicatti, Axel J","last_name":"Giudicatti"},{"full_name":"Cai, Qiang","last_name":"Cai","first_name":"Qiang"},{"first_name":"Hailing","last_name":"Jin","full_name":"Jin, Hailing"},{"last_name":"Feng","full_name":"Feng, Xiaoqi","orcid":"0000-0002-4008-1234","first_name":"Xiaoqi","id":"e0164712-22ee-11ed-b12a-d80fcdf35958"},{"first_name":"Yijun","full_name":"Qi, Yijun","last_name":"Qi"},{"first_name":"Craig S","last_name":"Pikaard","full_name":"Pikaard, Craig S"}],"article_processing_charge":"No","external_id":{"pmid":["36477566"]},"title":"Beyond transcription: compelling open questions in plant RNA biology","abstract":[{"text":"The study of RNAs has become one of the most influential research fields in contemporary biology and biomedicine. In the last few years, new sequencing technologies have produced an explosion of new and exciting discoveries in the field but have also given rise to many open questions. Defining these questions, together with old, long-standing gaps in our knowledge, is the spirit of this article. The breadth of topics within RNA biology research is vast, and every aspect of the biology of these molecules contains countless exciting open questions. Here, we asked 12 groups to discuss their most compelling question among some plant RNA biology topics. The following vignettes cover RNA alternative splicing; RNA dynamics; RNA translation; RNA structures; R-loops; epitranscriptomics; long non-coding RNAs; small RNA production and their functions in crops; small RNAs during gametogenesis and in cross-kingdom RNA interference; and RNA-directed DNA methylation. In each section, we will present the current state-of-the-art in plant RNA biology research before asking the questions that will surely motivate future discoveries in the field. We hope this article will spark a debate about the future perspective on RNA biology and provoke novel reflections in the reader.","lang":"eng"}],"oa_version":"Published Version","pmid":1,"scopus_import":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1093/plcell/koac346"}],"month":"06","intvolume":" 35","publication_identifier":{"issn":["1040-4651"],"eissn":["1532-298X"]},"publication_status":"published","language":[{"iso":"eng"}],"issue":"6","volume":35,"_id":"12669","type":"journal_article","article_type":"original","status":"public","keyword":["Cell Biology","Plant Science"],"date_updated":"2023-10-04T09:48:43Z","extern":"1","department":[{"_id":"XiFe"}]}]