[{"doi":"10.1088/1361-6544/ab9728","language":[{"iso":"eng"}],"oa":1,"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/3.0/legalcode","name":"Creative Commons Attribution 3.0 Unported (CC BY 3.0)","short":"CC BY (3.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000576492700001"],"arxiv":["1906.12245"]},"quality_controlled":"1","isi":1,"month":"11","publication_identifier":{"issn":["09517715"],"eissn":["13616544"]},"author":[{"full_name":"Fischer, Julian L","id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0479-558X","first_name":"Julian L","last_name":"Fischer"},{"first_name":"Michael","last_name":"Kniely","id":"2CA2C08C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5645-4333","full_name":"Kniely, Michael"}],"date_created":"2020-10-25T23:01:16Z","date_updated":"2023-08-22T10:38:38Z","volume":33,"year":"2020","publication_status":"published","department":[{"_id":"JuFi"}],"publisher":"IOP Publishing","file_date_updated":"2020-10-27T12:09:57Z","license":"https://creativecommons.org/licenses/by/3.0/","date_published":"2020-11-01T00:00:00Z","publication":"Nonlinearity","citation":{"apa":"Fischer, J. L., & Kniely, M. (2020). Variance reduction for effective energies of random lattices in the Thomas-Fermi-von Weizsäcker model. Nonlinearity. IOP Publishing. https://doi.org/10.1088/1361-6544/ab9728","ieee":"J. L. Fischer and M. Kniely, “Variance reduction for effective energies of random lattices in the Thomas-Fermi-von Weizsäcker model,” Nonlinearity, vol. 33, no. 11. IOP Publishing, pp. 5733–5772, 2020.","ista":"Fischer JL, Kniely M. 2020. Variance reduction for effective energies of random lattices in the Thomas-Fermi-von Weizsäcker model. Nonlinearity. 33(11), 5733–5772.","ama":"Fischer JL, Kniely M. Variance reduction for effective energies of random lattices in the Thomas-Fermi-von Weizsäcker model. Nonlinearity. 2020;33(11):5733-5772. doi:10.1088/1361-6544/ab9728","chicago":"Fischer, Julian L, and Michael Kniely. “Variance Reduction for Effective Energies of Random Lattices in the Thomas-Fermi-von Weizsäcker Model.” Nonlinearity. IOP Publishing, 2020. https://doi.org/10.1088/1361-6544/ab9728.","short":"J.L. Fischer, M. Kniely, Nonlinearity 33 (2020) 5733–5772.","mla":"Fischer, Julian L., and Michael Kniely. “Variance Reduction for Effective Energies of Random Lattices in the Thomas-Fermi-von Weizsäcker Model.” Nonlinearity, vol. 33, no. 11, IOP Publishing, 2020, pp. 5733–72, doi:10.1088/1361-6544/ab9728."},"article_type":"original","page":"5733-5772","day":"01","article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","scopus_import":"1","file":[{"access_level":"open_access","file_name":"2020_Nonlinearity_Fischer.pdf","creator":"cziletti","file_size":1223899,"content_type":"application/pdf","file_id":"8710","relation":"main_file","success":1,"checksum":"ed90bc6eb5f32ee6157fef7f3aabc057","date_updated":"2020-10-27T12:09:57Z","date_created":"2020-10-27T12:09:57Z"}],"oa_version":"Published Version","_id":"8697","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","status":"public","ddc":["510"],"title":"Variance reduction for effective energies of random lattices in the Thomas-Fermi-von Weizsäcker model","intvolume":" 33","abstract":[{"text":"In the computation of the material properties of random alloys, the method of 'special quasirandom structures' attempts to approximate the properties of the alloy on a finite volume with higher accuracy by replicating certain statistics of the random atomic lattice in the finite volume as accurately as possible. In the present work, we provide a rigorous justification for a variant of this method in the framework of the Thomas–Fermi–von Weizsäcker (TFW) model. Our approach is based on a recent analysis of a related variance reduction method in stochastic homogenization of linear elliptic PDEs and the locality properties of the TFW model. Concerning the latter, we extend an exponential locality result by Nazar and Ortner to include point charges, a result that may be of independent interest.","lang":"eng"}],"issue":"11","type":"journal_article"},{"publication":"Science","citation":{"short":"T.Y.-C. Tsai, M.K. Sikora, P. Xia, T. Colak-Champollion, H. Knaut, C.-P.J. Heisenberg, S.G. Megason, Science 370 (2020) 113–116.","mla":"Tsai, Tony Y. C., et al. “An Adhesion Code Ensures Robust Pattern Formation during Tissue Morphogenesis.” Science, vol. 370, no. 6512, American Association for the Advancement of Science, 2020, pp. 113–16, doi:10.1126/science.aba6637.","chicago":"Tsai, Tony Y.-C., Mateusz K Sikora, Peng Xia, Tugba Colak-Champollion, Holger Knaut, Carl-Philipp J Heisenberg, and Sean G. Megason. “An Adhesion Code Ensures Robust Pattern Formation during Tissue Morphogenesis.” Science. American Association for the Advancement of Science, 2020. https://doi.org/10.1126/science.aba6637.","ama":"Tsai TY-C, Sikora MK, Xia P, et al. An adhesion code ensures robust pattern formation during tissue morphogenesis. Science. 2020;370(6512):113-116. doi:10.1126/science.aba6637","apa":"Tsai, T. Y.-C., Sikora, M. K., Xia, P., Colak-Champollion, T., Knaut, H., Heisenberg, C.-P. J., & Megason, S. G. (2020). An adhesion code ensures robust pattern formation during tissue morphogenesis. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.aba6637","ieee":"T. Y.-C. Tsai et al., “An adhesion code ensures robust pattern formation during tissue morphogenesis,” Science, vol. 370, no. 6512. American Association for the Advancement of Science, pp. 113–116, 2020.","ista":"Tsai TY-C, Sikora MK, Xia P, Colak-Champollion T, Knaut H, Heisenberg C-PJ, Megason SG. 2020. An adhesion code ensures robust pattern formation during tissue morphogenesis. Science. 370(6512), 113–116."},"article_type":"original","page":"113-116","date_published":"2020-10-02T00:00:00Z","scopus_import":"1","keyword":["Multidisciplinary"],"day":"02","article_processing_charge":"No","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"8680","title":"An adhesion code ensures robust pattern formation during tissue morphogenesis","status":"public","intvolume":" 370","oa_version":"Preprint","type":"journal_article","abstract":[{"lang":"eng","text":"Animal development entails the organization of specific cell types in space and time, and spatial patterns must form in a robust manner. In the zebrafish spinal cord, neural progenitors form stereotypic patterns despite noisy morphogen signaling and large-scale cellular rearrangements during morphogenesis and growth. By directly measuring adhesion forces and preferences for three types of endogenous neural progenitors, we provide evidence for the differential adhesion model in which differences in intercellular adhesion mediate cell sorting. Cell type–specific combinatorial expression of different classes of cadherins (N-cadherin, cadherin 11, and protocadherin 19) results in homotypic preference ex vivo and patterning robustness in vivo. Furthermore, the differential adhesion code is regulated by the sonic hedgehog morphogen gradient. We propose that robust patterning during tissue morphogenesis results from interplay between adhesion-based self-organization and morphogen-directed patterning."}],"issue":"6512","external_id":{"isi":["000579169000053"]},"main_file_link":[{"url":"https://www.biorxiv.org/content/10.1101/803635v1","open_access":"1"}],"oa":1,"isi":1,"quality_controlled":"1","project":[{"name":"Interaction and feedback between cell mechanics and fate specification in vertebrate gastrulation","call_identifier":"H2020","_id":"260F1432-B435-11E9-9278-68D0E5697425","grant_number":"742573"}],"doi":"10.1126/science.aba6637","language":[{"iso":"eng"}],"month":"10","publication_identifier":{"issn":["0036-8075"],"eissn":["1095-9203"]},"year":"2020","acknowledgement":"We thank the members of the Megason and Heisenberg labs for critical discussions of and technical assistance during the work and B. Appel, S. Holley, J. Jontes, and D. Gilmour for transgenic fish. This work is supported by the Damon Runyon Cancer Foundation, a NICHD K99 fellowship (1K99HD092623), a Travelling Fellowship of the Company of Biologists, a Collaborative Research grant from the Burroughs Wellcome Foundation (T.Y.-C.T.), NIH grant 01GM107733 (T.Y.-C.T. and S.G.M.), NIH grant R01NS102322 (T.C.-C. and H.K.), and an ERC advanced grant\r\n(MECSPEC) (C.-P.H.).","publication_status":"published","publisher":"American Association for the Advancement of Science","department":[{"_id":"CaHe"}],"author":[{"full_name":"Tsai, Tony Y.-C.","first_name":"Tony Y.-C.","last_name":"Tsai"},{"full_name":"Sikora, Mateusz K","last_name":"Sikora","first_name":"Mateusz K","id":"2F74BCDE-F248-11E8-B48F-1D18A9856A87"},{"orcid":"0000-0002-5419-7756","id":"4AB6C7D0-F248-11E8-B48F-1D18A9856A87","last_name":"Xia","first_name":"Peng","full_name":"Xia, Peng"},{"full_name":"Colak-Champollion, Tugba","last_name":"Colak-Champollion","first_name":"Tugba"},{"last_name":"Knaut","first_name":"Holger","full_name":"Knaut, Holger"},{"full_name":"Heisenberg, Carl-Philipp J","first_name":"Carl-Philipp J","last_name":"Heisenberg","id":"39427864-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0912-4566"},{"first_name":"Sean G.","last_name":"Megason","full_name":"Megason, Sean G."}],"related_material":{"link":[{"url":"https://ist.ac.at/en/news/sticking-together/","relation":"press_release","description":"News on IST Homepage"}]},"date_created":"2020-10-19T14:09:38Z","date_updated":"2023-08-22T10:36:35Z","volume":370,"ec_funded":1},{"month":"10","publication_identifier":{"issn":["10614036"],"eissn":["15461718"]},"doi":"10.1038/s41588-020-00712-y","language":[{"iso":"eng"}],"external_id":{"isi":["000579693500004"],"pmid":["33077914"]},"quality_controlled":"1","isi":1,"author":[{"full_name":" Galan, Silvia","last_name":" Galan","first_name":"Silvia"},{"full_name":"Machnik, Nick N","id":"3591A0AA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6617-9742","first_name":"Nick N","last_name":"Machnik"},{"last_name":"Kruse","first_name":"Kai","full_name":"Kruse, Kai"},{"first_name":"Noelia","last_name":"Díaz","full_name":"Díaz, Noelia"},{"last_name":"Marti-Renom","first_name":"Marc A","full_name":"Marti-Renom, Marc A"},{"full_name":"Vaquerizas, Juan M","first_name":"Juan M","last_name":"Vaquerizas"}],"date_created":"2020-10-25T23:01:20Z","date_updated":"2023-08-22T10:37:10Z","volume":52,"acknowledgement":"Work in the Vaquerizas laboratory is funded by the Max Planck Society, the Deutsche Forschungsgemeinschaft (DFG) Priority Programme SPP 2202 ‘Spatial Genome Architecture in Development and Disease’ (project no. 422857230 to J.M.V.), the DFG Clinical Research Unit CRU326 ‘Male Germ Cells: from Genes to Function’ (project no. 329621271 to J.M.V.), the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement no. 643062—ZENCODE-ITN to J.M.V.) and the Medical Research Council in the UK. This research was partially funded by the European Union’s H2020 Framework Programme through the European Research Council (grant no. 609989 to M.A.M.-R.). We thank the support of the Spanish Ministerio de Ciencia, Innovación y Universidades through grant no. BFU2017-85926-P to M.A.M.-R. The Centre for Genomic Regulation thanks the support of the Ministerio de Ciencia, Innovación y Universidades to the European Molecular Biology Laboratory partnership, the ‘Centro de Excelencia Severo Ochoa 2013–2017’, agreement no. SEV-2012-0208, the CERCA Programme/Generalitat de Catalunya, Spanish Ministerio de Ciencia, Innovación y Universidades through the Instituto de Salud Carlos III, the Generalitat de Catalunya through the Departament de Salut and Departament d’Empresa i Coneixement and cofinancing by the Spanish Ministerio de Ciencia, Innovación y Universidades with funds from the European Regional Development Fund corresponding to the 2014–2020 Smart Growth Operating Program. S.G. thanks the support from the Company of Biologists (grant no. JCSTF181158) and the European Molecular Biology Organization Short-Term Fellowship programme.","year":"2020","pmid":1,"publication_status":"published","department":[{"_id":"FyKo"}],"publisher":"Springer Nature","day":"19","article_processing_charge":"No","scopus_import":"1","date_published":"2020-10-19T00:00:00Z","publication":"Nature Genetics","citation":{"chicago":"Galan, Silvia, Nick N Machnik, Kai Kruse, Noelia Díaz, Marc A Marti-Renom, and Juan M Vaquerizas. “CHESS Enables Quantitative Comparison of Chromatin Contact Data and Automatic Feature Extraction.” Nature Genetics. Springer Nature, 2020. https://doi.org/10.1038/s41588-020-00712-y.","mla":"Galan, Silvia, et al. “CHESS Enables Quantitative Comparison of Chromatin Contact Data and Automatic Feature Extraction.” Nature Genetics, vol. 52, Springer Nature, 2020, pp. 1247–55, doi:10.1038/s41588-020-00712-y.","short":"S. Galan, N.N. Machnik, K. Kruse, N. Díaz, M.A. Marti-Renom, J.M. Vaquerizas, Nature Genetics 52 (2020) 1247–1255.","ista":"Galan S, Machnik NN, Kruse K, Díaz N, Marti-Renom MA, Vaquerizas JM. 2020. CHESS enables quantitative comparison of chromatin contact data and automatic feature extraction. Nature Genetics. 52, 1247–1255.","apa":"Galan, S., Machnik, N. N., Kruse, K., Díaz, N., Marti-Renom, M. A., & Vaquerizas, J. M. (2020). CHESS enables quantitative comparison of chromatin contact data and automatic feature extraction. Nature Genetics. Springer Nature. https://doi.org/10.1038/s41588-020-00712-y","ieee":"S. Galan, N. N. Machnik, K. Kruse, N. Díaz, M. A. Marti-Renom, and J. M. Vaquerizas, “CHESS enables quantitative comparison of chromatin contact data and automatic feature extraction,” Nature Genetics, vol. 52. Springer Nature, pp. 1247–1255, 2020.","ama":"Galan S, Machnik NN, Kruse K, Díaz N, Marti-Renom MA, Vaquerizas JM. CHESS enables quantitative comparison of chromatin contact data and automatic feature extraction. Nature Genetics. 2020;52:1247-1255. doi:10.1038/s41588-020-00712-y"},"article_type":"original","page":"1247-1255","abstract":[{"lang":"eng","text":"Dynamic changes in the three-dimensional (3D) organization of chromatin are associated with central biological processes, such as transcription, replication and development. Therefore, the comprehensive identification and quantification of these changes is fundamental to understanding of evolutionary and regulatory mechanisms. Here, we present Comparison of Hi-C Experiments using Structural Similarity (CHESS), an algorithm for the comparison of chromatin contact maps and automatic differential feature extraction. We demonstrate the robustness of CHESS to experimental variability and showcase its biological applications on (1) interspecies comparisons of syntenic regions in human and mouse models; (2) intraspecies identification of conformational changes in Zelda-depleted Drosophila embryos; (3) patient-specific aberrant chromatin conformation in a diffuse large B-cell lymphoma sample; and (4) the systematic identification of chromatin contact differences in high-resolution Capture-C data. In summary, CHESS is a computationally efficient method for the comparison and classification of changes in chromatin contact data."}],"type":"journal_article","oa_version":"None","_id":"8707","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","status":"public","title":"CHESS enables quantitative comparison of chromatin contact data and automatic feature extraction","intvolume":" 52"},{"date_created":"2020-10-19T13:46:06Z","date_updated":"2023-08-22T10:36:06Z","volume":2,"author":[{"last_name":"Lechner","first_name":"Mathias","id":"3DC22916-F248-11E8-B48F-1D18A9856A87","full_name":"Lechner, Mathias"},{"last_name":"Hasani","first_name":"Ramin","full_name":"Hasani, Ramin"},{"last_name":"Amini","first_name":"Alexander","full_name":"Amini, Alexander"},{"id":"40876CD8-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2985-7724","first_name":"Thomas A","last_name":"Henzinger","full_name":"Henzinger, Thomas A"},{"full_name":"Rus, Daniela","last_name":"Rus","first_name":"Daniela"},{"last_name":"Grosu","first_name":"Radu","full_name":"Grosu, Radu"}],"related_material":{"link":[{"url":"https://ist.ac.at/en/news/new-deep-learning-models/","description":"News on IST Homepage","relation":"press_release"}]},"publication_status":"published","publisher":"Springer Nature","department":[{"_id":"ToHe"}],"year":"2020","language":[{"iso":"eng"}],"doi":"10.1038/s42256-020-00237-3","quality_controlled":"1","isi":1,"project":[{"call_identifier":"FWF","name":"The Wittgenstein Prize","_id":"25F42A32-B435-11E9-9278-68D0E5697425","grant_number":"Z211"}],"external_id":{"isi":["000583337200011"]},"month":"10","publication_identifier":{"eissn":["2522-5839"]},"oa_version":"None","title":"Neural circuit policies enabling auditable autonomy","status":"public","intvolume":" 2","_id":"8679","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","abstract":[{"text":"A central goal of artificial intelligence in high-stakes decision-making applications is to design a single algorithm that simultaneously expresses generalizability by learning coherent representations of their world and interpretable explanations of its dynamics. Here, we combine brain-inspired neural computation principles and scalable deep learning architectures to design compact neural controllers for task-specific compartments of a full-stack autonomous vehicle control system. We discover that a single algorithm with 19 control neurons, connecting 32 encapsulated input features to outputs by 253 synapses, learns to map high-dimensional inputs into steering commands. This system shows superior generalizability, interpretability and robustness compared with orders-of-magnitude larger black-box learning systems. The obtained neural agents enable high-fidelity autonomy for task-specific parts of a complex autonomous system.","lang":"eng"}],"type":"journal_article","date_published":"2020-10-01T00:00:00Z","article_type":"original","page":"642-652","publication":"Nature Machine Intelligence","citation":{"ama":"Lechner M, Hasani R, Amini A, Henzinger TA, Rus D, Grosu R. Neural circuit policies enabling auditable autonomy. Nature Machine Intelligence. 2020;2:642-652. doi:10.1038/s42256-020-00237-3","ieee":"M. Lechner, R. Hasani, A. Amini, T. A. Henzinger, D. Rus, and R. Grosu, “Neural circuit policies enabling auditable autonomy,” Nature Machine Intelligence, vol. 2. Springer Nature, pp. 642–652, 2020.","apa":"Lechner, M., Hasani, R., Amini, A., Henzinger, T. A., Rus, D., & Grosu, R. (2020). Neural circuit policies enabling auditable autonomy. Nature Machine Intelligence. Springer Nature. https://doi.org/10.1038/s42256-020-00237-3","ista":"Lechner M, Hasani R, Amini A, Henzinger TA, Rus D, Grosu R. 2020. Neural circuit policies enabling auditable autonomy. Nature Machine Intelligence. 2, 642–652.","short":"M. Lechner, R. Hasani, A. Amini, T.A. Henzinger, D. Rus, R. Grosu, Nature Machine Intelligence 2 (2020) 642–652.","mla":"Lechner, Mathias, et al. “Neural Circuit Policies Enabling Auditable Autonomy.” Nature Machine Intelligence, vol. 2, Springer Nature, 2020, pp. 642–52, doi:10.1038/s42256-020-00237-3.","chicago":"Lechner, Mathias, Ramin Hasani, Alexander Amini, Thomas A Henzinger, Daniela Rus, and Radu Grosu. “Neural Circuit Policies Enabling Auditable Autonomy.” Nature Machine Intelligence. Springer Nature, 2020. https://doi.org/10.1038/s42256-020-00237-3."},"day":"01","article_processing_charge":"No","scopus_import":"1"},{"type":"journal_article","issue":"10","abstract":[{"lang":"eng","text":"The α–z Rényi relative entropies are a two-parameter family of Rényi relative entropies that are quantum generalizations of the classical α-Rényi relative entropies. In the work [Adv. Math. 365, 107053 (2020)], we decided the full range of (α, z) for which the data processing inequality (DPI) is valid. In this paper, we give algebraic conditions for the equality in DPI. For the full range of parameters (α, z), we give necessary conditions and sufficient conditions. For most parameters, we give equivalent conditions. This generalizes and strengthens the results of Leditzky et al. [Lett. Math. Phys. 107, 61–80 (2017)]."}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"8670","intvolume":" 61","title":"Equality conditions of data processing inequality for α-z Rényi relative entropies","status":"public","oa_version":"Preprint","scopus_import":"1","article_processing_charge":"No","day":"01","citation":{"ieee":"H. Zhang, “Equality conditions of data processing inequality for α-z Rényi relative entropies,” Journal of Mathematical Physics, vol. 61, no. 10. AIP Publishing, 2020.","apa":"Zhang, H. (2020). Equality conditions of data processing inequality for α-z Rényi relative entropies. Journal of Mathematical Physics. AIP Publishing. https://doi.org/10.1063/5.0022787","ista":"Zhang H. 2020. Equality conditions of data processing inequality for α-z Rényi relative entropies. Journal of Mathematical Physics. 61(10), 102201.","ama":"Zhang H. Equality conditions of data processing inequality for α-z Rényi relative entropies. Journal of Mathematical Physics. 2020;61(10). doi:10.1063/5.0022787","chicago":"Zhang, Haonan. “Equality Conditions of Data Processing Inequality for α-z Rényi Relative Entropies.” Journal of Mathematical Physics. AIP Publishing, 2020. https://doi.org/10.1063/5.0022787.","short":"H. Zhang, Journal of Mathematical Physics 61 (2020).","mla":"Zhang, Haonan. “Equality Conditions of Data Processing Inequality for α-z Rényi Relative Entropies.” Journal of Mathematical Physics, vol. 61, no. 10, 102201, AIP Publishing, 2020, doi:10.1063/5.0022787."},"publication":"Journal of Mathematical Physics","article_type":"original","date_published":"2020-10-01T00:00:00Z","article_number":"102201","ec_funded":1,"year":"2020","acknowledgement":"This research was supported by the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie Grant Agreement No. 754411. The author would like to thank Anna Vershynina and Sarah Chehade for their helpful comments.","publisher":"AIP Publishing","department":[{"_id":"JaMa"}],"publication_status":"published","author":[{"last_name":"Zhang","first_name":"Haonan","id":"D8F41E38-9E66-11E9-A9E2-65C2E5697425","full_name":"Zhang, Haonan"}],"volume":61,"date_created":"2020-10-18T22:01:36Z","date_updated":"2023-08-22T10:32:29Z","publication_identifier":{"issn":["00222488"]},"month":"10","external_id":{"isi":["000578529200001"],"arxiv":["2007.06644"]},"main_file_link":[{"url":"https://arxiv.org/abs/2007.06644","open_access":"1"}],"oa":1,"project":[{"name":"ISTplus - Postdoctoral Fellowships","call_identifier":"H2020","_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411"}],"isi":1,"quality_controlled":"1","doi":"10.1063/5.0022787","language":[{"iso":"eng"}]},{"page":"25066-25073","article_type":"original","citation":{"ieee":"O. Maoz, G. Tkačik, M. S. Esteki, R. Kiani, and E. Schneidman, “Learning probabilistic neural representations with randomly connected circuits,” Proceedings of the National Academy of Sciences of the United States of America, vol. 117, no. 40. National Academy of Sciences, pp. 25066–25073, 2020.","apa":"Maoz, O., Tkačik, G., Esteki, M. S., Kiani, R., & Schneidman, E. (2020). Learning probabilistic neural representations with randomly connected circuits. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.1912804117","ista":"Maoz O, Tkačik G, Esteki MS, Kiani R, Schneidman E. 2020. Learning probabilistic neural representations with randomly connected circuits. Proceedings of the National Academy of Sciences of the United States of America. 117(40), 25066–25073.","ama":"Maoz O, Tkačik G, Esteki MS, Kiani R, Schneidman E. Learning probabilistic neural representations with randomly connected circuits. Proceedings of the National Academy of Sciences of the United States of America. 2020;117(40):25066-25073. doi:10.1073/pnas.1912804117","chicago":"Maoz, Ori, Gašper Tkačik, Mohamad Saleh Esteki, Roozbeh Kiani, and Elad Schneidman. “Learning Probabilistic Neural Representations with Randomly Connected Circuits.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2020. https://doi.org/10.1073/pnas.1912804117.","short":"O. Maoz, G. Tkačik, M.S. Esteki, R. Kiani, E. Schneidman, Proceedings of the National Academy of Sciences of the United States of America 117 (2020) 25066–25073.","mla":"Maoz, Ori, et al. “Learning Probabilistic Neural Representations with Randomly Connected Circuits.” Proceedings of the National Academy of Sciences of the United States of America, vol. 117, no. 40, National Academy of Sciences, 2020, pp. 25066–73, doi:10.1073/pnas.1912804117."},"publication":"Proceedings of the National Academy of Sciences of the United States of America","date_published":"2020-10-06T00:00:00Z","scopus_import":"1","article_processing_charge":"No","has_accepted_license":"1","day":"06","intvolume":" 117","title":"Learning probabilistic neural representations with randomly connected circuits","ddc":["570"],"status":"public","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"8698","file":[{"file_id":"8713","relation":"main_file","success":1,"checksum":"c6a24fdecf3f28faf447078e7a274a88","date_created":"2020-10-27T14:57:50Z","date_updated":"2020-10-27T14:57:50Z","access_level":"open_access","file_name":"2020_PNAS_Maoz.pdf","creator":"cziletti","file_size":1755359,"content_type":"application/pdf"}],"oa_version":"Published Version","type":"journal_article","issue":"40","abstract":[{"lang":"eng","text":"The brain represents and reasons probabilistically about complex stimuli and motor actions using a noisy, spike-based neural code. A key building block for such neural computations, as well as the basis for supervised and unsupervised learning, is the ability to estimate the surprise or likelihood of incoming high-dimensional neural activity patterns. Despite progress in statistical modeling of neural responses and deep learning, current approaches either do not scale to large neural populations or cannot be implemented using biologically realistic mechanisms. Inspired by the sparse and random connectivity of real neuronal circuits, we present a model for neural codes that accurately estimates the likelihood of individual spiking patterns and has a straightforward, scalable, efficient, learnable, and realistic neural implementation. This model’s performance on simultaneously recorded spiking activity of >100 neurons in the monkey visual and prefrontal cortices is comparable with or better than that of state-of-the-art models. Importantly, the model can be learned using a small number of samples and using a local learning rule that utilizes noise intrinsic to neural circuits. Slower, structural changes in random connectivity, consistent with rewiring and pruning processes, further improve the efficiency and sparseness of the resulting neural representations. Our results merge insights from neuroanatomy, machine learning, and theoretical neuroscience to suggest random sparse connectivity as a key design principle for neuronal computation."}],"quality_controlled":"1","isi":1,"tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png"},"oa":1,"external_id":{"pmid":["32948691"],"isi":["000579045200012"]},"language":[{"iso":"eng"}],"doi":"10.1073/pnas.1912804117","publication_identifier":{"issn":["00278424"],"eissn":["10916490"]},"month":"10","department":[{"_id":"GaTk"}],"publisher":"National Academy of Sciences","publication_status":"published","pmid":1,"acknowledgement":"We thank Udi Karpas, Roy Harpaz, Tal Tamir, Adam Haber, and Amir Bar for discussions and suggestions; and especially Oren Forkosh and Walter Senn for invaluable discussions of the learning rule. This work was supported by European Research Council Grant 311238 (to E.S.) and Israel Science Foundation Grant 1629/12 (to E.S.); as well as research support from Martin Kushner Schnur and Mr. and Mrs. Lawrence Feis (E.S.); National Institute of Mental Health Grant R01MH109180 (to R.K.); a Pew Scholarship in Biomedical Sciences (to R.K.); Simons Collaboration on the Global Brain Grant 542997 (to R.K. and E.S.); and a CRCNS (Collaborative Research in Computational Neuroscience) grant (to R.K. and E.S.).","year":"2020","volume":117,"date_created":"2020-10-25T23:01:16Z","date_updated":"2023-08-22T12:11:23Z","author":[{"first_name":"Ori","last_name":"Maoz","full_name":"Maoz, Ori"},{"full_name":"Tkačik, Gašper","first_name":"Gašper","last_name":"Tkačik","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6699-1455"},{"full_name":"Esteki, Mohamad Saleh","last_name":"Esteki","first_name":"Mohamad Saleh"},{"full_name":"Kiani, Roozbeh","last_name":"Kiani","first_name":"Roozbeh"},{"first_name":"Elad","last_name":"Schneidman","full_name":"Schneidman, Elad"}],"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","file_date_updated":"2020-10-27T14:57:50Z"},{"file_date_updated":"2020-11-06T10:58:49Z","author":[{"full_name":"Lechner, Mathias","first_name":"Mathias","last_name":"Lechner","id":"3DC22916-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Hasani, Ramin","first_name":"Ramin","last_name":"Hasani"},{"last_name":"Rus","first_name":"Daniela","full_name":"Rus, Daniela"},{"last_name":"Grosu","first_name":"Radu","full_name":"Grosu, Radu"}],"date_created":"2020-10-25T23:01:19Z","date_updated":"2023-08-22T10:40:15Z","acknowledgement":"M.L. is supported in parts by the Austrian Science Fund (FWF) under grant Z211-N23 (Wittgenstein Award). R.H., and R.G. are partially supported by the Horizon-2020 ECSELProject grant No. 783163 (iDev40), and the Austrian Research Promotion Agency (FFG), Project No. 860424. R.H. and D.R. is partially supported by the Boeing Company.","year":"2020","department":[{"_id":"ToHe"}],"publisher":"IEEE","publication_status":"published","publication_identifier":{"issn":["10504729"],"isbn":["9781728173955"]},"month":"05","doi":"10.1109/ICRA40945.2020.9196608","conference":{"name":"ICRA: International Conference on Robotics and Automation","location":"Paris, France","start_date":"2020-05-31","end_date":"2020-08-31"},"language":[{"iso":"eng"}],"external_id":{"isi":["000712319503110"]},"oa":1,"project":[{"call_identifier":"FWF","name":"The Wittgenstein Prize","_id":"25F42A32-B435-11E9-9278-68D0E5697425","grant_number":"Z211"}],"isi":1,"quality_controlled":"1","abstract":[{"lang":"eng","text":"Traditional robotic control suits require profound task-specific knowledge for designing, building and testing control software. The rise of Deep Learning has enabled end-to-end solutions to be learned entirely from data, requiring minimal knowledge about the application area. We design a learning scheme to train end-to-end linear dynamical systems (LDS)s by gradient descent in imitation learning robotic domains. We introduce a new regularization loss component together with a learning algorithm that improves the stability of the learned autonomous system, by forcing the eigenvalues of the internal state updates of an LDS to be negative reals. We evaluate our approach on a series of real-life and simulated robotic experiments, in comparison to linear and nonlinear Recurrent Neural Network (RNN) architectures. Our results show that our stabilizing method significantly improves test performance of LDS, enabling such linear models to match the performance of contemporary nonlinear RNN architectures. A video of the obstacle avoidance performance of our method on a mobile robot, in unseen environments, compared to other methods can be viewed at https://youtu.be/mhEsCoNao5E."}],"type":"conference","alternative_title":["ICRA"],"file":[{"file_name":"2020_ICRA_Lechner.pdf","access_level":"open_access","creator":"dernst","file_size":1070010,"content_type":"application/pdf","file_id":"8733","relation":"main_file","date_updated":"2020-11-06T10:58:49Z","date_created":"2020-11-06T10:58:49Z","success":1,"checksum":"fccf7b986ac78046918a298cc6849a50"}],"oa_version":"Submitted Version","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"8704","status":"public","ddc":["000"],"title":"Gershgorin loss stabilizes the recurrent neural network compartment of an end-to-end robot learning scheme","article_processing_charge":"No","has_accepted_license":"1","day":"01","scopus_import":"1","date_published":"2020-05-01T00:00:00Z","citation":{"apa":"Lechner, M., Hasani, R., Rus, D., & Grosu, R. (2020). Gershgorin loss stabilizes the recurrent neural network compartment of an end-to-end robot learning scheme. In Proceedings - IEEE International Conference on Robotics and Automation (pp. 5446–5452). Paris, France: IEEE. https://doi.org/10.1109/ICRA40945.2020.9196608","ieee":"M. Lechner, R. Hasani, D. Rus, and R. Grosu, “Gershgorin loss stabilizes the recurrent neural network compartment of an end-to-end robot learning scheme,” in Proceedings - IEEE International Conference on Robotics and Automation, Paris, France, 2020, pp. 5446–5452.","ista":"Lechner M, Hasani R, Rus D, Grosu R. 2020. Gershgorin loss stabilizes the recurrent neural network compartment of an end-to-end robot learning scheme. Proceedings - IEEE International Conference on Robotics and Automation. ICRA: International Conference on Robotics and Automation, ICRA, , 5446–5452.","ama":"Lechner M, Hasani R, Rus D, Grosu R. Gershgorin loss stabilizes the recurrent neural network compartment of an end-to-end robot learning scheme. In: Proceedings - IEEE International Conference on Robotics and Automation. IEEE; 2020:5446-5452. doi:10.1109/ICRA40945.2020.9196608","chicago":"Lechner, Mathias, Ramin Hasani, Daniela Rus, and Radu Grosu. “Gershgorin Loss Stabilizes the Recurrent Neural Network Compartment of an End-to-End Robot Learning Scheme.” In Proceedings - IEEE International Conference on Robotics and Automation, 5446–52. IEEE, 2020. https://doi.org/10.1109/ICRA40945.2020.9196608.","short":"M. Lechner, R. Hasani, D. Rus, R. Grosu, in:, Proceedings - IEEE International Conference on Robotics and Automation, IEEE, 2020, pp. 5446–5452.","mla":"Lechner, Mathias, et al. “Gershgorin Loss Stabilizes the Recurrent Neural Network Compartment of an End-to-End Robot Learning Scheme.” Proceedings - IEEE International Conference on Robotics and Automation, IEEE, 2020, pp. 5446–52, doi:10.1109/ICRA40945.2020.9196608."},"publication":"Proceedings - IEEE International Conference on Robotics and Automation","page":"5446-5452"},{"date_updated":"2023-08-22T10:39:38Z","date_created":"2020-10-25T23:01:17Z","volume":54,"author":[{"full_name":"Sokolova, E. E.","first_name":"E. E.","last_name":"Sokolova"},{"last_name":"Vlasov","first_name":"Petr","id":"38BB9AC4-F248-11E8-B48F-1D18A9856A87","full_name":"Vlasov, Petr"},{"full_name":"Egorova, T. V.","first_name":"T. V.","last_name":"Egorova"},{"full_name":"Shuvalov, A. V.","first_name":"A. V.","last_name":"Shuvalov"},{"full_name":"Alkalaeva, E. Z.","last_name":"Alkalaeva","first_name":"E. Z."}],"related_material":{"record":[{"status":"public","relation":"original","id":"8701"}]},"publication_status":"published","department":[{"_id":"FyKo"}],"publisher":"Springer Nature","year":"2020","acknowledgement":"We would like to thank the staff of CCU Genome for sequencing, Tat’yana Pestova, Christopher Helen, and Lyudmila Yur’evna Frolova for the plasmids provided, as well as the laboratory staff for productive discussion of the results. We also thank former laboratory employees Yuliya Vladimirovna Bocharova and Polina Nikolaevna Kryuchkova for the exceptional contribution to the present work.","month":"09","publication_identifier":{"issn":["00268933"],"eissn":["16083245"]},"language":[{"iso":"eng"}],"doi":"10.1134/S0026893320050088","quality_controlled":"1","isi":1,"external_id":{"isi":["000579441200009"]},"abstract":[{"text":"Translation termination is a finishing step of protein biosynthesis. The significant role in this process belongs not only to protein factors of translation termination but also to the nearest nucleotide environment of stop codons. There are numerous descriptions of stop codons readthrough, which is due to specific nucleotide sequences behind them. However, represented data are segmental and don’t explain the mechanism of the nucleotide context influence on translation termination. It is well known that stop codon UAA usage is preferential for A/T-rich genes, and UAG, UGA—for G/C-rich genes, which is related to an expression level of these genes. We investigated the connection between a frequency of nucleotides occurrence in 3' area of stop codons in the human genome and their influence on translation termination efficiency. We found that 3' context motif, which is cognate to the sequence of a stop codon, stimulates translation termination. At the same time, the nucleotide composition of 3' sequence that differs from stop codon, decreases translation termination efficiency.","lang":"eng"}],"issue":"5","type":"journal_article","oa_version":"None","title":"The influence of A/G composition of 3' stop codon contexts on translation termination efficiency in eukaryotes","status":"public","intvolume":" 54","_id":"8700","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","day":"01","article_processing_charge":"No","scopus_import":"1","date_published":"2020-09-01T00:00:00Z","article_type":"original","page":"739-748","publication":"Molecular Biology","citation":{"mla":"Sokolova, E. E., et al. “The Influence of A/G Composition of 3’ Stop Codon Contexts on Translation Termination Efficiency in Eukaryotes.” Molecular Biology, vol. 54, no. 5, Springer Nature, 2020, pp. 739–48, doi:10.1134/S0026893320050088.","short":"E.E. Sokolova, P. Vlasov, T.V. Egorova, A.V. Shuvalov, E.Z. Alkalaeva, Molecular Biology 54 (2020) 739–748.","chicago":"Sokolova, E. E., Petr Vlasov, T. V. Egorova, A. V. Shuvalov, and E. Z. Alkalaeva. “The Influence of A/G Composition of 3’ Stop Codon Contexts on Translation Termination Efficiency in Eukaryotes.” Molecular Biology. Springer Nature, 2020. https://doi.org/10.1134/S0026893320050088.","ama":"Sokolova EE, Vlasov P, Egorova TV, Shuvalov AV, Alkalaeva EZ. The influence of A/G composition of 3’ stop codon contexts on translation termination efficiency in eukaryotes. Molecular Biology. 2020;54(5):739-748. doi:10.1134/S0026893320050088","ista":"Sokolova EE, Vlasov P, Egorova TV, Shuvalov AV, Alkalaeva EZ. 2020. The influence of A/G composition of 3’ stop codon contexts on translation termination efficiency in eukaryotes. Molecular Biology. 54(5), 739–748.","apa":"Sokolova, E. E., Vlasov, P., Egorova, T. V., Shuvalov, A. V., & Alkalaeva, E. Z. (2020). The influence of A/G composition of 3’ stop codon contexts on translation termination efficiency in eukaryotes. Molecular Biology. Springer Nature. https://doi.org/10.1134/S0026893320050088","ieee":"E. E. Sokolova, P. Vlasov, T. V. Egorova, A. V. Shuvalov, and E. Z. Alkalaeva, “The influence of A/G composition of 3’ stop codon contexts on translation termination efficiency in eukaryotes,” Molecular Biology, vol. 54, no. 5. Springer Nature, pp. 739–748, 2020."}},{"scopus_import":"1","day":"01","article_processing_charge":"No","publication":"Molekuliarnaia biologiia","citation":{"mla":"Sokolova, E. E., et al. “The influence of A/G composition of 3’ stop codon contexts on translation termination efficiency in eukaryotes.” Molekuliarnaia biologiia, vol. 54, no. 5, Russian Academy of Sciences, 2020, pp. 837–48, doi:10.31857/S0026898420050080.","short":"E.E. Sokolova, P. Vlasov, T.V. Egorova, A.V. Shuvalov, E.Z. Alkalaeva, Molekuliarnaia biologiia 54 (2020) 837–848.","chicago":"Sokolova, E. E., Petr Vlasov, T. V. Egorova, A. V. Shuvalov, and E. Z. Alkalaeva. “The influence of A/G composition of 3’ stop codon contexts on translation termination efficiency in eukaryotes.” Molekuliarnaia biologiia. Russian Academy of Sciences, 2020. https://doi.org/10.31857/S0026898420050080.","ama":"Sokolova EE, Vlasov P, Egorova TV, Shuvalov AV, Alkalaeva EZ. The influence of A/G composition of 3’ stop codon contexts on translation termination efficiency in eukaryotes. Molekuliarnaia biologiia. 2020;54(5):837-848. doi:10.31857/S0026898420050080","ista":"Sokolova EE, Vlasov P, Egorova TV, Shuvalov AV, Alkalaeva EZ. 2020. The influence of A/G composition of 3’ stop codon contexts on translation termination efficiency in eukaryotes. Molekuliarnaia biologiia. 54(5), 837–848.","apa":"Sokolova, E. E., Vlasov, P., Egorova, T. V., Shuvalov, A. V., & Alkalaeva, E. Z. (2020). The influence of A/G composition of 3’ stop codon contexts on translation termination efficiency in eukaryotes. Molekuliarnaia biologiia. Russian Academy of Sciences. https://doi.org/10.31857/S0026898420050080","ieee":"E. E. Sokolova, P. Vlasov, T. V. Egorova, A. V. Shuvalov, and E. Z. Alkalaeva, “The influence of A/G composition of 3’ stop codon contexts on translation termination efficiency in eukaryotes,” Molekuliarnaia biologiia, vol. 54, no. 5. Russian Academy of Sciences, pp. 837–848, 2020."},"article_type":"original","page":"837-848","date_published":"2020-09-01T00:00:00Z","type":"journal_article","abstract":[{"text":"Translation termination is a finishing step of protein biosynthesis. The significant role in this process belongs not only to protein factors of translation termination but also to the nearest nucleotide environment of stop codons. There are numerous descriptions of stop codons readthrough, which is due to specific nucleotide sequences behind them. However, represented data are segmental and don’t explain the mechanism of the nucleotide context influence on translation termination. It is well known that stop codon UAA usage is preferential for A/T-rich genes, and UAG, UGA—for G/C-rich genes, which is related to an expression level of these genes. We investigated the connection between a frequency of nucleotides occurrence in 3' area of stop codons in the human genome and their influence on translation termination efficiency. We found that 3' context motif, which is cognate to the sequence of a stop codon, stimulates translation termination. At the same time, the nucleotide composition of 3' sequence that differs from stop codon, decreases translation termination efficiency.","lang":"eng"}],"issue":"5","_id":"8701","user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","title":"The influence of A/G composition of 3' stop codon contexts on translation termination efficiency in eukaryotes","status":"public","intvolume":" 54","oa_version":"None","month":"09","publication_identifier":{"issn":["00268984"]},"external_id":{"pmid":["33009793"]},"quality_controlled":"1","doi":"10.31857/S0026898420050080","language":[{"iso":"rus"}],"year":"2020","pmid":1,"publication_status":"published","department":[{"_id":"FyKo"}],"publisher":"Russian Academy of Sciences","author":[{"full_name":"Sokolova, E. E.","first_name":"E. E.","last_name":"Sokolova"},{"last_name":"Vlasov","first_name":"Petr","id":"38BB9AC4-F248-11E8-B48F-1D18A9856A87","full_name":"Vlasov, Petr"},{"full_name":"Egorova, T. V.","first_name":"T. V.","last_name":"Egorova"},{"full_name":"Shuvalov, A. V.","first_name":"A. V.","last_name":"Shuvalov"},{"full_name":"Alkalaeva, E. Z.","last_name":"Alkalaeva","first_name":"E. Z."}],"related_material":{"record":[{"relation":"translation","status":"public","id":"8700"}]},"date_updated":"2023-08-22T10:39:37Z","date_created":"2020-10-25T23:01:17Z","volume":54},{"article_number":"2011.06630","type":"preprint","abstract":[{"lang":"eng","text":"A binary neutron star merger has been observed in a multi-messenger detection of gravitational wave (GW) and electromagnetic (EM) radiation. Binary neutron stars that merge within a Hubble time, as well as many other compact binaries, are expected to form via common envelope evolution. Yet five decades of research on common envelope evolution have not yet resulted in a satisfactory understanding of the multi-spatial multi-timescale evolution for the systems that lead to compact binaries. In this paper, we report on the first successful simulations of common envelope ejection leading to binary neutron star formation in 3D hydrodynamics. We simulate the dynamical inspiral phase of the interaction between a 12M⊙ red supergiant and a 1.4M⊙ neutron star for different initial separations and initial conditions. For all of our simulations, we find complete envelope ejection and final orbital separations of af≈1.3-5.1R⊙ depending on the simulation and criterion, leading to binary neutron stars that can merge within a Hubble time. We find αCE-equivalent efficiencies of ≈0.1-2.7 depending on the simulation and criterion, but this may be specific for these extended progenitors. We fully resolve the core of the star to ≲0.005R⊙ and our 3D hydrodynamics simulations are informed by an adjusted 1D analytic energy formalism and a 2D kinematics study in order to overcome the prohibitive computational cost of simulating these systems. The framework we develop in this paper can be used to simulate a wide variety of interactions between stars, from stellar mergers to common envelope episodes leading to GW sources."}],"_id":"14096","year":"2020","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Successful common envelope ejection and binary neutron star formation in 3D hydrodynamics","status":"public","publication_status":"submitted","author":[{"full_name":"Jamie A. P. Law-Smith, Jamie A. P. Law-Smith","first_name":"Jamie A. P. Law-Smith","last_name":"Jamie A. P. Law-Smith"},{"first_name":"Rosa Wallace","last_name":"Everson","full_name":"Everson, Rosa Wallace"},{"full_name":"Enrico Ramirez-Ruiz, Enrico Ramirez-Ruiz","first_name":"Enrico Ramirez-Ruiz","last_name":"Enrico Ramirez-Ruiz"},{"full_name":"Mink, Selma E. de","first_name":"Selma E. de","last_name":"Mink"},{"full_name":"Son, Lieke A. C. van","last_name":"Son","first_name":"Lieke A. C. van"},{"orcid":"0000-0002-6960-6911","id":"d0648d0c-0f64-11ee-a2e0-dd0faa2e4f7d","last_name":"Götberg","first_name":"Ylva Louise Linsdotter","full_name":"Götberg, Ylva Louise Linsdotter"},{"last_name":"Zellmann","first_name":"Stefan","full_name":"Zellmann, Stefan"},{"last_name":"Alejandro Vigna-Gómez","first_name":"Alejandro Vigna-Gómez","full_name":"Alejandro Vigna-Gómez, Alejandro Vigna-Gómez"},{"full_name":"Renzo, Mathieu","last_name":"Renzo","first_name":"Mathieu"},{"full_name":"Wu, Samantha","first_name":"Samantha","last_name":"Wu"},{"full_name":"Schrøder, Sophie L.","first_name":"Sophie L.","last_name":"Schrøder"},{"last_name":"Foley","first_name":"Ryan J.","full_name":"Foley, Ryan J."},{"full_name":"Tenley Hutchinson-Smith, Tenley Hutchinson-Smith","last_name":"Tenley Hutchinson-Smith","first_name":"Tenley Hutchinson-Smith"}],"date_updated":"2023-08-22T11:03:00Z","date_created":"2023-08-21T10:10:41Z","oa_version":"Preprint","month":"11","day":"12","article_processing_charge":"No","publication":"arXiv","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2011.06630","open_access":"1"}],"citation":{"chicago":"Jamie A. P. Law-Smith, Jamie A. P. Law-Smith, Rosa Wallace Everson, Enrico Ramirez-Ruiz Enrico Ramirez-Ruiz, Selma E. de Mink, Lieke A. C. van Son, Ylva Louise Linsdotter Götberg, Stefan Zellmann, et al. “Successful Common Envelope Ejection and Binary Neutron Star Formation in 3D Hydrodynamics.” ArXiv, n.d. https://doi.org/10.48550/arXiv.2011.06630.","mla":"Jamie A. P. Law-Smith, Jamie A. P. Law-Smith, et al. “Successful Common Envelope Ejection and Binary Neutron Star Formation in 3D Hydrodynamics.” ArXiv, 2011.06630, doi:10.48550/arXiv.2011.06630.","short":"J.A.P.L.-S. Jamie A. P. Law-Smith, R.W. Everson, E.R.-R. Enrico Ramirez-Ruiz, S.E. de Mink, L.A.C. van Son, Y.L.L. Götberg, S. Zellmann, A.V.-G. Alejandro Vigna-Gómez, M. Renzo, S. Wu, S.L. Schrøder, R.J. Foley, T.H.-S. Tenley Hutchinson-Smith, ArXiv (n.d.).","ista":"Jamie A. P. Law-Smith JAPL-S, Everson RW, Enrico Ramirez-Ruiz ER-R, Mink SE de, Son LAC van, Götberg YLL, Zellmann S, Alejandro Vigna-Gómez AV-G, Renzo M, Wu S, Schrøder SL, Foley RJ, Tenley Hutchinson-Smith TH-S. Successful common envelope ejection and binary neutron star formation in 3D hydrodynamics. arXiv, 2011.06630.","apa":"Jamie A. P. Law-Smith, J. A. P. L.-S., Everson, R. W., Enrico Ramirez-Ruiz, E. R.-R., Mink, S. E. de, Son, L. A. C. van, Götberg, Y. L. L., … Tenley Hutchinson-Smith, T. H.-S. (n.d.). Successful common envelope ejection and binary neutron star formation in 3D hydrodynamics. arXiv. https://doi.org/10.48550/arXiv.2011.06630","ieee":"J. A. P. L.-S. Jamie A. P. Law-Smith et al., “Successful common envelope ejection and binary neutron star formation in 3D hydrodynamics,” arXiv. .","ama":"Jamie A. P. Law-Smith JAPL-S, Everson RW, Enrico Ramirez-Ruiz ER-R, et al. Successful common envelope ejection and binary neutron star formation in 3D hydrodynamics. arXiv. doi:10.48550/arXiv.2011.06630"},"oa":1,"external_id":{"arxiv":["2011.06630"]},"date_published":"2020-11-12T00:00:00Z","doi":"10.48550/arXiv.2011.06630","language":[{"iso":"eng"}]},{"external_id":{"arxiv":["2009.12262"],"isi":["000579059100029"],"pmid":["32958669"]},"tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png"},"oa":1,"isi":1,"quality_controlled":"1","project":[{"call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411"}],"doi":"10.1073/pnas.2012043117","language":[{"iso":"eng"}],"month":"10","publication_identifier":{"eissn":["10916490"],"issn":["00278424"]},"acknowledgement":"We gratefully acknowledge C. Sahle for experimental support at the ID20 beamline of the ESRF. The soft X-ray experiments were carried out at the ADRESS beamline of the Swiss Light Source, Paul Scherrer Institut (PSI). E. Paris and T.S. thank X. Lu and C. Monney for valuable discussions. The work at PSI is supported by the Swiss National Science Foundation (SNSF) through Project 200021_178867, the NCCR (National Centre of Competence in Research) MARVEL (Materials’ Revolution: Computational Design and Discovery of Novel Materials) and the Sinergia network Mott Physics Beyond the Heisenberg Model (MPBH) (SNSF Research Grants CRSII2_160765/1 and CRSII2_141962). K.W. acknowledges support by the Narodowe Centrum Nauki Projects 2016/22/E/ST3/00560 and 2016/23/B/ST3/00839. E.M.P. and M.N. acknowledge funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie Grant Agreements 754411 and 701647, respectively. M.R. was supported by the Swiss National Science Foundation under Project 200021 – 182695. This research used resources of the APS, a U.S. Department of Energy (DOE) Office of Science User Facility operated for the DOE Office of Science by Argonne National Laboratory under Contract DE-AC02-06CH11357.","year":"2020","pmid":1,"publication_status":"published","department":[{"_id":"MiLe"}],"publisher":"National Academy of Sciences","author":[{"last_name":"Paris","first_name":"Eugenio","full_name":"Paris, Eugenio"},{"full_name":"Tseng, Yi","first_name":"Yi","last_name":"Tseng"},{"full_name":"Paerschke, Ekaterina","id":"8275014E-6063-11E9-9B7F-6338E6697425","orcid":"0000-0003-0853-8182","first_name":"Ekaterina","last_name":"Paerschke"},{"last_name":"Zhang","first_name":"Wenliang","full_name":"Zhang, Wenliang"},{"first_name":"Mary H","last_name":"Upton","full_name":"Upton, Mary H"},{"full_name":"Efimenko, Anna","last_name":"Efimenko","first_name":"Anna"},{"full_name":"Rolfs, Katharina","first_name":"Katharina","last_name":"Rolfs"},{"full_name":"McNally, Daniel E","last_name":"McNally","first_name":"Daniel E"},{"last_name":"Maurel","first_name":"Laura","full_name":"Maurel, Laura"},{"full_name":"Naamneh, Muntaser","last_name":"Naamneh","first_name":"Muntaser"},{"full_name":"Caputo, Marco","last_name":"Caputo","first_name":"Marco"},{"full_name":"Strocov, Vladimir N","last_name":"Strocov","first_name":"Vladimir N"},{"full_name":"Wang, Zhiming","last_name":"Wang","first_name":"Zhiming"},{"first_name":"Diego","last_name":"Casa","full_name":"Casa, Diego"},{"first_name":"Christof W","last_name":"Schneider","full_name":"Schneider, Christof W"},{"first_name":"Ekaterina","last_name":"Pomjakushina","full_name":"Pomjakushina, Ekaterina"},{"full_name":"Wohlfeld, Krzysztof","last_name":"Wohlfeld","first_name":"Krzysztof"},{"last_name":"Radovic","first_name":"Milan","full_name":"Radovic, Milan"},{"first_name":"Thorsten","last_name":"Schmitt","full_name":"Schmitt, Thorsten"}],"date_created":"2020-10-25T23:01:17Z","date_updated":"2023-08-22T12:11:52Z","volume":117,"file_date_updated":"2020-10-28T11:53:12Z","ec_funded":1,"publication":"Proceedings of the National Academy of Sciences of the United States of America","citation":{"ista":"Paris E, Tseng Y, Paerschke E, Zhang W, Upton MH, Efimenko A, Rolfs K, McNally DE, Maurel L, Naamneh M, Caputo M, Strocov VN, Wang Z, Casa D, Schneider CW, Pomjakushina E, Wohlfeld K, Radovic M, Schmitt T. 2020. Strain engineering of the charge and spin-orbital interactions in Sr2IrO4. Proceedings of the National Academy of Sciences of the United States of America. 117(40), 24764–24770.","apa":"Paris, E., Tseng, Y., Paerschke, E., Zhang, W., Upton, M. H., Efimenko, A., … Schmitt, T. (2020). Strain engineering of the charge and spin-orbital interactions in Sr2IrO4. Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences. https://doi.org/10.1073/pnas.2012043117","ieee":"E. Paris et al., “Strain engineering of the charge and spin-orbital interactions in Sr2IrO4,” Proceedings of the National Academy of Sciences of the United States of America, vol. 117, no. 40. National Academy of Sciences, pp. 24764–24770, 2020.","ama":"Paris E, Tseng Y, Paerschke E, et al. Strain engineering of the charge and spin-orbital interactions in Sr2IrO4. Proceedings of the National Academy of Sciences of the United States of America. 2020;117(40):24764-24770. doi:10.1073/pnas.2012043117","chicago":"Paris, Eugenio, Yi Tseng, Ekaterina Paerschke, Wenliang Zhang, Mary H Upton, Anna Efimenko, Katharina Rolfs, et al. “Strain Engineering of the Charge and Spin-Orbital Interactions in Sr2IrO4.” Proceedings of the National Academy of Sciences of the United States of America. National Academy of Sciences, 2020. https://doi.org/10.1073/pnas.2012043117.","mla":"Paris, Eugenio, et al. “Strain Engineering of the Charge and Spin-Orbital Interactions in Sr2IrO4.” Proceedings of the National Academy of Sciences of the United States of America, vol. 117, no. 40, National Academy of Sciences, 2020, pp. 24764–70, doi:10.1073/pnas.2012043117.","short":"E. Paris, Y. Tseng, E. Paerschke, W. Zhang, M.H. Upton, A. Efimenko, K. Rolfs, D.E. McNally, L. Maurel, M. Naamneh, M. Caputo, V.N. Strocov, Z. Wang, D. Casa, C.W. Schneider, E. Pomjakushina, K. Wohlfeld, M. Radovic, T. Schmitt, Proceedings of the National Academy of Sciences of the United States of America 117 (2020) 24764–24770."},"article_type":"original","page":"24764-24770","date_published":"2020-10-06T00:00:00Z","scopus_import":"1","day":"06","has_accepted_license":"1","article_processing_charge":"No","_id":"8699","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","status":"public","ddc":["530"],"title":"Strain engineering of the charge and spin-orbital interactions in Sr2IrO4","intvolume":" 117","oa_version":"Published Version","file":[{"creator":"cziletti","file_size":1176522,"content_type":"application/pdf","file_name":"2020_PNAS_Paris.pdf","access_level":"open_access","date_created":"2020-10-28T11:53:12Z","date_updated":"2020-10-28T11:53:12Z","success":1,"checksum":"1638fa36b442e2868576c6dd7d6dc505","file_id":"8715","relation":"main_file"}],"type":"journal_article","abstract":[{"text":"In the high spin–orbit-coupled Sr2IrO4, the high sensitivity of the ground state to the details of the local lattice structure shows a large potential for the manipulation of the functional properties by inducing local lattice distortions. We use epitaxial strain to modify the Ir–O bond geometry in Sr2IrO4 and perform momentum-dependent resonant inelastic X-ray scattering (RIXS) at the metal and at the ligand sites to unveil the response of the low-energy elementary excitations. We observe that the pseudospin-wave dispersion for tensile-strained Sr2IrO4 films displays large softening along the [h,0] direction, while along the [h,h] direction it shows hardening. This evolution reveals a renormalization of the magnetic interactions caused by a strain-driven cross-over from anisotropic to isotropic interactions between the magnetic moments. Moreover, we detect dispersive electron–hole pair excitations which shift to lower (higher) energies upon compressive (tensile) strain, manifesting a reduction (increase) in the size of the charge gap. This behavior shows an intimate coupling between charge excitations and lattice distortions in Sr2IrO4, originating from the modified hopping elements between the t2g orbitals. Our work highlights the central role played by the lattice degrees of freedom in determining both the pseudospin and charge excitations of Sr2IrO4 and provides valuable information toward the control of the ground state of complex oxides in the presence of high spin–orbit coupling.","lang":"eng"}],"issue":"40"},{"pmid":1,"acknowledgement":"We thank J. Novacek (CEITEC Brno) and V.-V. Hodirnau (IST Austria) for their help with collecting cryo-EM datasets. We thank the IST Life Science and Electron Microscopy Facilities for providing equipment. This work has been supported by iNEXT,project number 653706, funded by the Horizon 2020 program of the European Union. This article reflects only the authors’view,and the European Commission is not responsible for any use that may be made of the information it contains. CIISB research infrastructure project LM2015043 funded by MEYS CR is gratefully acknowledged for the financial support of the measurements at the CF Cryo-electron Microscopy and Tomography CEITEC MU.This project has received funding from the European Union’s Horizon 2020 research and innovation program under the Marie Skłodowska-Curie Grant Agreement no. 665385","year":"2020","publisher":"American Association for the Advancement of Science","department":[{"_id":"LeSa"}],"publication_status":"published","author":[{"id":"37233050-F248-11E8-B48F-1D18A9856A87","first_name":"Domen","last_name":"Kampjut","full_name":"Kampjut, Domen"},{"first_name":"Leonid A","last_name":"Sazanov","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0977-7989","full_name":"Sazanov, Leonid A"}],"volume":370,"date_updated":"2023-08-22T12:35:38Z","date_created":"2020-11-08T23:01:23Z","article_number":"eabc4209","ec_funded":1,"file_date_updated":"2020-11-26T18:47:58Z","external_id":{"isi":["000583031800004"],"pmid":["32972993"]},"oa":1,"project":[{"name":"International IST Doctoral Program","call_identifier":"H2020","_id":"2564DBCA-B435-11E9-9278-68D0E5697425","grant_number":"665385"}],"isi":1,"quality_controlled":"1","doi":"10.1126/science.abc4209","language":[{"iso":"eng"}],"acknowledged_ssus":[{"_id":"LifeSc"},{"_id":"EM-Fac"}],"publication_identifier":{"eissn":["10959203"]},"month":"10","_id":"8737","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","intvolume":" 370","status":"public","ddc":["572"],"title":"The coupling mechanism of mammalian respiratory complex I","file":[{"file_id":"8820","relation":"main_file","date_updated":"2020-11-26T18:47:58Z","date_created":"2020-11-26T18:47:58Z","success":1,"checksum":"658ba90979ca9528a2efdfac8547047a","file_name":"Full_manuscript_with_SI_opt_red.pdf","access_level":"open_access","creator":"lsazanov","content_type":"application/pdf","file_size":7618987}],"oa_version":"Submitted Version","type":"journal_article","issue":"6516","abstract":[{"lang":"eng","text":"Mitochondrial complex I couples NADH:ubiquinone oxidoreduction to proton pumping by an unknown mechanism. Here, we present cryo-electron microscopy structures of ovine complex I in five different conditions, including turnover, at resolutions up to 2.3 to 2.5 angstroms. Resolved water molecules allowed us to experimentally define the proton translocation pathways. Quinone binds at three positions along the quinone cavity, as does the inhibitor rotenone that also binds within subunit ND4. Dramatic conformational changes around the quinone cavity couple the redox reaction to proton translocation during open-to-closed state transitions of the enzyme. In the induced deactive state, the open conformation is arrested by the ND6 subunit. We propose a detailed molecular coupling mechanism of complex I, which is an unexpected combination of conformational changes and electrostatic interactions."}],"citation":{"ieee":"D. Kampjut and L. A. Sazanov, “The coupling mechanism of mammalian respiratory complex I,” Science, vol. 370, no. 6516. American Association for the Advancement of Science, 2020.","apa":"Kampjut, D., & Sazanov, L. A. (2020). The coupling mechanism of mammalian respiratory complex I. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.abc4209","ista":"Kampjut D, Sazanov LA. 2020. The coupling mechanism of mammalian respiratory complex I. Science. 370(6516), eabc4209.","ama":"Kampjut D, Sazanov LA. The coupling mechanism of mammalian respiratory complex I. Science. 2020;370(6516). doi:10.1126/science.abc4209","chicago":"Kampjut, Domen, and Leonid A Sazanov. “The Coupling Mechanism of Mammalian Respiratory Complex I.” Science. American Association for the Advancement of Science, 2020. https://doi.org/10.1126/science.abc4209.","short":"D. Kampjut, L.A. Sazanov, Science 370 (2020).","mla":"Kampjut, Domen, and Leonid A. Sazanov. “The Coupling Mechanism of Mammalian Respiratory Complex I.” Science, vol. 370, no. 6516, eabc4209, American Association for the Advancement of Science, 2020, doi:10.1126/science.abc4209."},"publication":"Science","article_type":"original","date_published":"2020-10-30T00:00:00Z","scopus_import":"1","article_processing_charge":"No","has_accepted_license":"1","day":"30"},{"isi":1,"quality_controlled":"1","project":[{"name":"Elastic Coordination for Scalable Machine Learning","call_identifier":"H2020","_id":"268A44D6-B435-11E9-9278-68D0E5697425","grant_number":"805223"}],"oa":1,"external_id":{"arxiv":["1908.04207"],"isi":["000564476500004"]},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1908.04207"}],"language":[{"iso":"eng"}],"conference":{"location":"San Diego, CA, United States","start_date":"2020-02-22","end_date":"2020-02-26","name":"PPoPP: Sympopsium on Principles and Practice of Parallel Programming"},"doi":"10.1145/3332466.3374528","month":"02","publication_status":"published","department":[{"_id":"DaAl"}],"publisher":"Association for Computing Machinery","year":"2020","date_created":"2020-11-05T15:25:30Z","date_updated":"2023-08-22T12:13:48Z","author":[{"first_name":"Shigang","last_name":"Li","full_name":"Li, Shigang"},{"first_name":"Tal Ben-Nun","last_name":"Tal Ben-Nun","full_name":"Tal Ben-Nun, Tal Ben-Nun"},{"full_name":"Girolamo, Salvatore Di","first_name":"Salvatore Di","last_name":"Girolamo"},{"last_name":"Alistarh","first_name":"Dan-Adrian","orcid":"0000-0003-3650-940X","id":"4A899BFC-F248-11E8-B48F-1D18A9856A87","full_name":"Alistarh, Dan-Adrian"},{"full_name":"Hoefler, Torsten","first_name":"Torsten","last_name":"Hoefler"}],"ec_funded":1,"page":"45-61","publication":"Proceedings of the 25th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming","citation":{"ista":"Li S, Tal Ben-Nun TB-N, Girolamo SD, Alistarh D-A, Hoefler T. 2020. Taming unbalanced training workloads in deep learning with partial collective operations. Proceedings of the 25th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming. PPoPP: Sympopsium on Principles and Practice of Parallel Programming, 45–61.","ieee":"S. Li, T. B.-N. Tal Ben-Nun, S. D. Girolamo, D.-A. Alistarh, and T. Hoefler, “Taming unbalanced training workloads in deep learning with partial collective operations,” in Proceedings of the 25th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, San Diego, CA, United States, 2020, pp. 45–61.","apa":"Li, S., Tal Ben-Nun, T. B.-N., Girolamo, S. D., Alistarh, D.-A., & Hoefler, T. (2020). Taming unbalanced training workloads in deep learning with partial collective operations. In Proceedings of the 25th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming (pp. 45–61). San Diego, CA, United States: Association for Computing Machinery. https://doi.org/10.1145/3332466.3374528","ama":"Li S, Tal Ben-Nun TB-N, Girolamo SD, Alistarh D-A, Hoefler T. Taming unbalanced training workloads in deep learning with partial collective operations. In: Proceedings of the 25th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming. Association for Computing Machinery; 2020:45-61. doi:10.1145/3332466.3374528","chicago":"Li, Shigang, Tal Ben-Nun Tal Ben-Nun, Salvatore Di Girolamo, Dan-Adrian Alistarh, and Torsten Hoefler. “Taming Unbalanced Training Workloads in Deep Learning with Partial Collective Operations.” In Proceedings of the 25th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, 45–61. Association for Computing Machinery, 2020. https://doi.org/10.1145/3332466.3374528.","mla":"Li, Shigang, et al. “Taming Unbalanced Training Workloads in Deep Learning with Partial Collective Operations.” Proceedings of the 25th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, Association for Computing Machinery, 2020, pp. 45–61, doi:10.1145/3332466.3374528.","short":"S. Li, T.B.-N. Tal Ben-Nun, S.D. Girolamo, D.-A. Alistarh, T. Hoefler, in:, Proceedings of the 25th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, Association for Computing Machinery, 2020, pp. 45–61."},"date_published":"2020-02-01T00:00:00Z","day":"01","article_processing_charge":"No","status":"public","title":"Taming unbalanced training workloads in deep learning with partial collective operations","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"8722","oa_version":"Preprint","type":"conference","abstract":[{"text":"Load imbalance pervasively exists in distributed deep learning training systems, either caused by the inherent imbalance in learned tasks or by the system itself. Traditional synchronous Stochastic Gradient Descent (SGD)\r\nachieves good accuracy for a wide variety of tasks, but relies on global synchronization to accumulate the gradients at every training step. In this paper, we propose eager-SGD, which relaxes the global synchronization for\r\ndecentralized accumulation. To implement eager-SGD, we propose to use two partial collectives: solo and majority. With solo allreduce, the faster processes contribute their gradients eagerly without waiting for the slower processes, whereas with majority allreduce, at least half of the participants must contribute gradients before continuing, all without using a central parameter server. We theoretically prove the convergence of the algorithms and describe the partial collectives in detail. Experimental results on load-imbalanced environments (CIFAR-10, ImageNet, and UCF101 datasets) show\r\nthat eager-SGD achieves 1.27x speedup over the state-of-the-art synchronous SGD, without losing accuracy.","lang":"eng"}]},{"year":"2020","acknowledgement":"We acknowledge help from Anja Seybert, Margot Frangakis, Diana Grewe, Mikhail Eltsov, Utz Ermel, and Shintaro Aibara. The work was supported by Deutsche Forschungsgemeinschaft in the CLiC graduate school. Work at the Center for Biomolecular Magnetic Resonance (BMRZ) is supported by the German state of Hesse. The work at BMRZ has been supported by the state of Hesse. L.S. has been supported by the DFG graduate college: CLiC.","publisher":"Springer Nature","department":[{"_id":"EM-Fac"}],"publication_status":"published","author":[{"full_name":"Schulte, Linda","last_name":"Schulte","first_name":"Linda"},{"last_name":"Mao","first_name":"Jiafei","full_name":"Mao, Jiafei"},{"first_name":"Julian","last_name":"Reitz","full_name":"Reitz, Julian"},{"full_name":"Sreeramulu, Sridhar","first_name":"Sridhar","last_name":"Sreeramulu"},{"first_name":"Denis","last_name":"Kudlinzki","full_name":"Kudlinzki, Denis"},{"full_name":"Hodirnau, Victor-Valentin","first_name":"Victor-Valentin","last_name":"Hodirnau","id":"3661B498-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Meier-Credo, Jakob","first_name":"Jakob","last_name":"Meier-Credo"},{"full_name":"Saxena, Krishna","first_name":"Krishna","last_name":"Saxena"},{"first_name":"Florian","last_name":"Buhr","full_name":"Buhr, Florian"},{"full_name":"Langer, Julian D.","first_name":"Julian D.","last_name":"Langer"},{"first_name":"Martin","last_name":"Blackledge","full_name":"Blackledge, Martin"},{"first_name":"Achilleas S.","last_name":"Frangakis","full_name":"Frangakis, Achilleas S."},{"first_name":"Clemens","last_name":"Glaubitz","full_name":"Glaubitz, Clemens"},{"first_name":"Harald","last_name":"Schwalbe","full_name":"Schwalbe, Harald"}],"volume":11,"date_updated":"2023-08-22T12:36:07Z","date_created":"2020-11-09T07:49:36Z","article_number":"5569","file_date_updated":"2020-11-09T07:56:24Z","external_id":{"isi":["000592028600001"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"quality_controlled":"1","isi":1,"doi":"10.1038/s41467-020-19372-x","language":[{"iso":"eng"}],"publication_identifier":{"issn":["2041-1723"]},"month":"11","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"8744","intvolume":" 11","title":"Cysteine oxidation and disulfide formation in the ribosomal exit tunnel","status":"public","ddc":["570"],"file":[{"creator":"dernst","file_size":1670898,"content_type":"application/pdf","file_name":"2020_NatureComm_Schulte.pdf","access_level":"open_access","date_created":"2020-11-09T07:56:24Z","date_updated":"2020-11-09T07:56:24Z","success":1,"checksum":"b2688f0347e69e6629bba582077278c5","file_id":"8745","relation":"main_file"}],"oa_version":"Published Version","type":"journal_article","abstract":[{"lang":"eng","text":"Understanding the conformational sampling of translation-arrested ribosome nascent chain complexes is key to understand co-translational folding. Up to now, coupling of cysteine oxidation, disulfide bond formation and structure formation in nascent chains has remained elusive. Here, we investigate the eye-lens protein γB-crystallin in the ribosomal exit tunnel. Using mass spectrometry, theoretical simulations, dynamic nuclear polarization-enhanced solid-state nuclear magnetic resonance and cryo-electron microscopy, we show that thiol groups of cysteine residues undergo S-glutathionylation and S-nitrosylation and form non-native disulfide bonds. Thus, covalent modification chemistry occurs already prior to nascent chain release as the ribosome exit tunnel provides sufficient space even for disulfide bond formation which can guide protein folding."}],"citation":{"chicago":"Schulte, Linda, Jiafei Mao, Julian Reitz, Sridhar Sreeramulu, Denis Kudlinzki, Victor-Valentin Hodirnau, Jakob Meier-Credo, et al. “Cysteine Oxidation and Disulfide Formation in the Ribosomal Exit Tunnel.” Nature Communications. Springer Nature, 2020. https://doi.org/10.1038/s41467-020-19372-x.","short":"L. Schulte, J. Mao, J. Reitz, S. Sreeramulu, D. Kudlinzki, V.-V. Hodirnau, J. Meier-Credo, K. Saxena, F. Buhr, J.D. Langer, M. Blackledge, A.S. Frangakis, C. Glaubitz, H. Schwalbe, Nature Communications 11 (2020).","mla":"Schulte, Linda, et al. “Cysteine Oxidation and Disulfide Formation in the Ribosomal Exit Tunnel.” Nature Communications, vol. 11, 5569, Springer Nature, 2020, doi:10.1038/s41467-020-19372-x.","apa":"Schulte, L., Mao, J., Reitz, J., Sreeramulu, S., Kudlinzki, D., Hodirnau, V.-V., … Schwalbe, H. (2020). Cysteine oxidation and disulfide formation in the ribosomal exit tunnel. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-020-19372-x","ieee":"L. Schulte et al., “Cysteine oxidation and disulfide formation in the ribosomal exit tunnel,” Nature Communications, vol. 11. Springer Nature, 2020.","ista":"Schulte L, Mao J, Reitz J, Sreeramulu S, Kudlinzki D, Hodirnau V-V, Meier-Credo J, Saxena K, Buhr F, Langer JD, Blackledge M, Frangakis AS, Glaubitz C, Schwalbe H. 2020. Cysteine oxidation and disulfide formation in the ribosomal exit tunnel. Nature Communications. 11, 5569.","ama":"Schulte L, Mao J, Reitz J, et al. Cysteine oxidation and disulfide formation in the ribosomal exit tunnel. Nature Communications. 2020;11. doi:10.1038/s41467-020-19372-x"},"publication":"Nature Communications","article_type":"original","date_published":"2020-11-04T00:00:00Z","scopus_import":"1","keyword":["General Biochemistry","Genetics and Molecular Biology","General Physics and Astronomy","General Chemistry"],"has_accepted_license":"1","article_processing_charge":"No","day":"04"},{"doi":"10.1039/D0TC02182B","language":[{"iso":"eng"}],"external_id":{"isi":["000581559100015"]},"project":[{"call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425"}],"quality_controlled":"1","isi":1,"month":"10","author":[{"first_name":"Yu","last_name":"Zhang","full_name":"Zhang, Yu"},{"full_name":"Liu, Yu","id":"2A70014E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7313-6740","first_name":"Yu","last_name":"Liu"},{"first_name":"Mariano","last_name":"Calcabrini","full_name":"Calcabrini, Mariano"},{"full_name":"Xing, Congcong","first_name":"Congcong","last_name":"Xing"},{"full_name":"Han, Xu","last_name":"Han","first_name":"Xu"},{"full_name":"Arbiol, Jordi","last_name":"Arbiol","first_name":"Jordi"},{"first_name":"Doris","last_name":"Cadavid","full_name":"Cadavid, Doris"},{"full_name":"Ibáñez, Maria","orcid":"0000-0001-5013-2843","id":"43C61214-F248-11E8-B48F-1D18A9856A87","last_name":"Ibáñez","first_name":"Maria"},{"last_name":"Cabot","first_name":"Andreu","full_name":"Cabot, Andreu"}],"volume":8,"date_created":"2020-11-09T08:37:51Z","date_updated":"2023-08-22T12:41:05Z","year":"2020","acknowledgement":"This work was supported by the European Regional Development Funds and by the Spanish Ministerio de Economı´a y\r\nCompetitividad through the project SEHTOP (ENE2016-77798-C4-3-R). Y. Z. and X. H., thank the China Scholarship Council for scholarship support. M. C. has received funding from the European Union’s Horizon 2020 Research and Innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 665385. M. I. acknowledges financial support from IST Austria. Y. L. acknowledges funding from the European Union’s Horizon 2020 Research and Innovation Programme under the Marie Sklodowska-Curie grant agreement no. 754411. ICN2 acknowledges funding from Generalitat de Catalunya 2017 SGR 327 and the Spanish MINECO project ENE2017-85087-C3. ICN2 is supported by the Severo Ochoa program from the Spanish MINECO (grant no. SEV-2017-0706) and is funded by the CERCA Programme/Generalitat de Catalunya. Part of the present work has been performed in the framework of Universitat \r\nAuto`noma de Barcelona Materials Science PhD program.","department":[{"_id":"MaIb"}],"publisher":"Royal Society of Chemistry","publication_status":"published","ec_funded":1,"date_published":"2020-10-28T00:00:00Z","citation":{"chicago":"Zhang, Yu, Yu Liu, Mariano Calcabrini, Congcong Xing, Xu Han, Jordi Arbiol, Doris Cadavid, Maria Ibáñez, and Andreu Cabot. “Bismuth Telluride-Copper Telluride Nanocomposites from Heterostructured Building Blocks.” Journal of Materials Chemistry C. Royal Society of Chemistry, 2020. https://doi.org/10.1039/D0TC02182B.","mla":"Zhang, Yu, et al. “Bismuth Telluride-Copper Telluride Nanocomposites from Heterostructured Building Blocks.” Journal of Materials Chemistry C, vol. 8, no. 40, Royal Society of Chemistry, 2020, pp. 14092–99, doi:10.1039/D0TC02182B.","short":"Y. Zhang, Y. Liu, M. Calcabrini, C. Xing, X. Han, J. Arbiol, D. Cadavid, M. Ibáñez, A. Cabot, Journal of Materials Chemistry C 8 (2020) 14092–14099.","ista":"Zhang Y, Liu Y, Calcabrini M, Xing C, Han X, Arbiol J, Cadavid D, Ibáñez M, Cabot A. 2020. Bismuth telluride-copper telluride nanocomposites from heterostructured building blocks. Journal of Materials Chemistry C. 8(40), 14092–14099.","apa":"Zhang, Y., Liu, Y., Calcabrini, M., Xing, C., Han, X., Arbiol, J., … Cabot, A. (2020). Bismuth telluride-copper telluride nanocomposites from heterostructured building blocks. Journal of Materials Chemistry C. Royal Society of Chemistry. https://doi.org/10.1039/D0TC02182B","ieee":"Y. Zhang et al., “Bismuth telluride-copper telluride nanocomposites from heterostructured building blocks,” Journal of Materials Chemistry C, vol. 8, no. 40. Royal Society of Chemistry, pp. 14092–14099, 2020.","ama":"Zhang Y, Liu Y, Calcabrini M, et al. Bismuth telluride-copper telluride nanocomposites from heterostructured building blocks. Journal of Materials Chemistry C. 2020;8(40):14092-14099. doi:10.1039/D0TC02182B"},"publication":"Journal of Materials Chemistry C","page":"14092-14099","article_type":"original","article_processing_charge":"No","day":"28","scopus_import":"1","oa_version":"None","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"8747","intvolume":" 8","title":"Bismuth telluride-copper telluride nanocomposites from heterostructured building blocks","status":"public","issue":"40","abstract":[{"text":"Appropriately designed nanocomposites allow improving the thermoelectric performance by several mechanisms, including phonon scattering, modulation doping and energy filtering, while additionally promoting better mechanical properties than those of crystalline materials. Here, a strategy for producing Bi2Te3–Cu2xTe nanocomposites based on the consolidation of heterostructured nanoparticles is described and the thermoelectric properties of the obtained materials are investigated. We first detail a two-step solution-based process to produce Bi2Te3–Cu2xTe heteronanostructures, based on the growth of Cu2xTe nanocrystals on the surface of Bi2Te3 nanowires. We characterize the structural and chemical properties of the synthesized nanostructures and of the nanocomposites\r\nproduced by hot-pressing the particles at moderate temperatures. Besides, the transport properties of the nanocomposites are investigated as a function of the amount of Cu introduced. Overall, the presence of Cu decreases the material thermal conductivity through promotion of phonon scattering, modulates the charge carrier concentration through electron spillover, and increases the Seebeck coefficient through filtering of charge carriers at energy barriers. These effects result in an improvement of over 50% of the thermoelectric figure of merit of Bi2Te3.","lang":"eng"}],"type":"journal_article"},{"extern":"1","abstract":[{"text":"The Habitable Exoplanet Observatory, or HabEx, has been designed to be the Great Observatory of the 2030s. For the first time in human history, technologies have matured sufficiently to enable an affordable space-based telescope mission capable of discovering and characterizing Earthlike planets orbiting nearby bright sunlike stars in order to search for signs of habitability and biosignatures. Such a mission can also be equipped with instrumentation that will enable broad and exciting general astrophysics and planetary science not possible from current or planned facilities. HabEx is a space telescope with unique imaging and multi-object spectroscopic capabilities at wavelengths ranging from ultraviolet (UV) to near-IR. These capabilities allow for a broad suite of compelling science that cuts across the entire NASA astrophysics portfolio. HabEx has three primary science goals: (1) Seek out nearby worlds and explore their habitability; (2) Map out nearby planetary systems and understand the diversity of the worlds they contain; (3) Enable new explorations of astrophysical systems from our own solar system to external galaxies by extending our reach in the UV through near-IR. This Great Observatory science will be selected through a competed GO program, and will account for about 50% of the HabEx primary mission. The preferred HabEx architecture is a 4m, monolithic, off-axis telescope that is diffraction-limited at 0.4 microns and is in an L2 orbit. HabEx employs two starlight suppression systems: a coronagraph and a starshade, each with their own dedicated instrument.","lang":"eng"}],"type":"preprint","article_number":"2001.06683","oa_version":"Preprint","date_updated":"2023-08-22T13:13:18Z","date_created":"2023-08-21T10:10:21Z","author":[{"full_name":"Gaudi, B. Scott","first_name":"B. Scott","last_name":"Gaudi"},{"full_name":"Seager, Sara","last_name":"Seager","first_name":"Sara"},{"full_name":"Mennesson, Bertrand","first_name":"Bertrand","last_name":"Mennesson"},{"full_name":"Kiessling, Alina","first_name":"Alina","last_name":"Kiessling"},{"last_name":"Warfield","first_name":"Keith","full_name":"Warfield, Keith"},{"first_name":"Kerri","last_name":"Cahoy","full_name":"Cahoy, Kerri"},{"last_name":"Clarke","first_name":"John T.","full_name":"Clarke, John T."},{"full_name":"Shawn Domagal-Goldman, Shawn Domagal-Goldman","first_name":"Shawn Domagal-Goldman","last_name":"Shawn Domagal-Goldman"},{"full_name":"Feinberg, Lee","first_name":"Lee","last_name":"Feinberg"},{"first_name":"Olivier","last_name":"Guyon","full_name":"Guyon, Olivier"},{"first_name":"Jeremy","last_name":"Kasdin","full_name":"Kasdin, Jeremy"},{"first_name":"Dimitri","last_name":"Mawet","full_name":"Mawet, Dimitri"},{"full_name":"Plavchan, Peter","last_name":"Plavchan","first_name":"Peter"},{"last_name":"Robinson","first_name":"Tyler","full_name":"Robinson, Tyler"},{"first_name":"Leslie","last_name":"Rogers","full_name":"Rogers, Leslie"},{"last_name":"Scowen","first_name":"Paul","full_name":"Scowen, Paul"},{"first_name":"Rachel","last_name":"Somerville","full_name":"Somerville, Rachel"},{"full_name":"Stapelfeldt, Karl","last_name":"Stapelfeldt","first_name":"Karl"},{"full_name":"Stark, Christopher","first_name":"Christopher","last_name":"Stark"},{"full_name":"Stern, Daniel","first_name":"Daniel","last_name":"Stern"},{"full_name":"Turnbull, Margaret","last_name":"Turnbull","first_name":"Margaret"},{"full_name":"Amini, Rashied","last_name":"Amini","first_name":"Rashied"},{"first_name":"Gary","last_name":"Kuan","full_name":"Kuan, Gary"},{"first_name":"Stefan","last_name":"Martin","full_name":"Martin, Stefan"},{"full_name":"Morgan, Rhonda","first_name":"Rhonda","last_name":"Morgan"},{"full_name":"Redding, David","first_name":"David","last_name":"Redding"},{"full_name":"Stahl, H. Philip","first_name":"H. Philip","last_name":"Stahl"},{"last_name":"Webb","first_name":"Ryan","full_name":"Webb, Ryan"},{"full_name":"Oscar Alvarez-Salazar, Oscar Alvarez-Salazar","last_name":"Oscar Alvarez-Salazar","first_name":"Oscar Alvarez-Salazar"},{"first_name":"William L.","last_name":"Arnold","full_name":"Arnold, William L."},{"first_name":"Manan","last_name":"Arya","full_name":"Arya, Manan"},{"full_name":"Balasubramanian, Bala","last_name":"Balasubramanian","first_name":"Bala"},{"full_name":"Baysinger, Mike","last_name":"Baysinger","first_name":"Mike"},{"full_name":"Bell, Ray","last_name":"Bell","first_name":"Ray"},{"full_name":"Below, Chris","first_name":"Chris","last_name":"Below"},{"first_name":"Jonathan","last_name":"Benson","full_name":"Benson, Jonathan"},{"last_name":"Blais","first_name":"Lindsey","full_name":"Blais, Lindsey"},{"first_name":"Jeff","last_name":"Booth","full_name":"Booth, Jeff"},{"first_name":"Robert","last_name":"Bourgeois","full_name":"Bourgeois, Robert"},{"full_name":"Bradford, Case","last_name":"Bradford","first_name":"Case"},{"first_name":"Alden","last_name":"Brewer","full_name":"Brewer, Alden"},{"full_name":"Brooks, Thomas","last_name":"Brooks","first_name":"Thomas"},{"first_name":"Eric","last_name":"Cady","full_name":"Cady, Eric"},{"full_name":"Caldwell, Mary","last_name":"Caldwell","first_name":"Mary"},{"full_name":"Calvet, Rob","first_name":"Rob","last_name":"Calvet"},{"last_name":"Carr","first_name":"Steven","full_name":"Carr, Steven"},{"first_name":"Derek","last_name":"Chan","full_name":"Chan, Derek"},{"first_name":"Velibor","last_name":"Cormarkovic","full_name":"Cormarkovic, Velibor"},{"last_name":"Coste","first_name":"Keith","full_name":"Coste, Keith"},{"full_name":"Cox, Charlie","last_name":"Cox","first_name":"Charlie"},{"last_name":"Danner","first_name":"Rolf","full_name":"Danner, Rolf"},{"full_name":"Davis, Jacqueline","last_name":"Davis","first_name":"Jacqueline"},{"full_name":"Dewell, Larry","last_name":"Dewell","first_name":"Larry"},{"full_name":"Dorsett, Lisa","first_name":"Lisa","last_name":"Dorsett"},{"last_name":"Dunn","first_name":"Daniel","full_name":"Dunn, Daniel"},{"full_name":"East, Matthew","last_name":"East","first_name":"Matthew"},{"last_name":"Effinger","first_name":"Michael","full_name":"Effinger, Michael"},{"last_name":"Eng","first_name":"Ron","full_name":"Eng, Ron"},{"last_name":"Freebury","first_name":"Greg","full_name":"Freebury, Greg"},{"last_name":"Garcia","first_name":"Jay","full_name":"Garcia, Jay"},{"first_name":"Jonathan","last_name":"Gaskin","full_name":"Gaskin, Jonathan"},{"last_name":"Greene","first_name":"Suzan","full_name":"Greene, Suzan"},{"full_name":"Hennessy, John","first_name":"John","last_name":"Hennessy"},{"first_name":"Evan","last_name":"Hilgemann","full_name":"Hilgemann, Evan"},{"first_name":"Brad","last_name":"Hood","full_name":"Hood, Brad"},{"full_name":"Holota, Wolfgang","first_name":"Wolfgang","last_name":"Holota"},{"first_name":"Scott","last_name":"Howe","full_name":"Howe, Scott"},{"first_name":"Pei","last_name":"Huang","full_name":"Huang, Pei"},{"full_name":"Hull, Tony","first_name":"Tony","last_name":"Hull"},{"full_name":"Hunt, Ron","last_name":"Hunt","first_name":"Ron"},{"last_name":"Hurd","first_name":"Kevin","full_name":"Hurd, Kevin"},{"full_name":"Johnson, Sandra","last_name":"Johnson","first_name":"Sandra"},{"first_name":"Andrew","last_name":"Kissil","full_name":"Kissil, Andrew"},{"last_name":"Knight","first_name":"Brent","full_name":"Knight, Brent"},{"last_name":"Kolenz","first_name":"Daniel","full_name":"Kolenz, Daniel"},{"full_name":"Kraus, Oliver","last_name":"Kraus","first_name":"Oliver"},{"full_name":"Krist, John","last_name":"Krist","first_name":"John"},{"full_name":"Li, Mary","last_name":"Li","first_name":"Mary"},{"first_name":"Doug","last_name":"Lisman","full_name":"Lisman, Doug"},{"first_name":"Milan","last_name":"Mandic","full_name":"Mandic, Milan"},{"first_name":"John","last_name":"Mann","full_name":"Mann, John"},{"full_name":"Marchen, Luis","first_name":"Luis","last_name":"Marchen"},{"full_name":"Colleen Marrese-Reading, Colleen Marrese-Reading","last_name":"Colleen Marrese-Reading","first_name":"Colleen Marrese-Reading"},{"full_name":"McCready, Jonathan","last_name":"McCready","first_name":"Jonathan"},{"full_name":"McGown, Jim","last_name":"McGown","first_name":"Jim"},{"full_name":"Missun, Jessica","last_name":"Missun","first_name":"Jessica"},{"full_name":"Miyaguchi, Andrew","last_name":"Miyaguchi","first_name":"Andrew"},{"last_name":"Moore","first_name":"Bradley","full_name":"Moore, Bradley"},{"last_name":"Nemati","first_name":"Bijan","full_name":"Nemati, Bijan"},{"full_name":"Nikzad, Shouleh","first_name":"Shouleh","last_name":"Nikzad"},{"last_name":"Nissen","first_name":"Joel","full_name":"Nissen, Joel"},{"full_name":"Novicki, Megan","last_name":"Novicki","first_name":"Megan"},{"last_name":"Perrine","first_name":"Todd","full_name":"Perrine, Todd"},{"full_name":"Pineda, Claudia","last_name":"Pineda","first_name":"Claudia"},{"last_name":"Polanco","first_name":"Otto","full_name":"Polanco, Otto"},{"full_name":"Putnam, Dustin","last_name":"Putnam","first_name":"Dustin"},{"last_name":"Qureshi","first_name":"Atif","full_name":"Qureshi, Atif"},{"first_name":"Michael","last_name":"Richards","full_name":"Richards, Michael"},{"full_name":"Riggs, A. J. Eldorado","last_name":"Riggs","first_name":"A. J. Eldorado"},{"full_name":"Rodgers, Michael","last_name":"Rodgers","first_name":"Michael"},{"first_name":"Mike","last_name":"Rud","full_name":"Rud, Mike"},{"full_name":"Saini, Navtej","first_name":"Navtej","last_name":"Saini"},{"full_name":"Scalisi, Dan","last_name":"Scalisi","first_name":"Dan"},{"last_name":"Scharf","first_name":"Dan","full_name":"Scharf, Dan"},{"full_name":"Schulz, Kevin","first_name":"Kevin","last_name":"Schulz"},{"full_name":"Serabyn, Gene","last_name":"Serabyn","first_name":"Gene"},{"full_name":"Sigrist, Norbert","first_name":"Norbert","last_name":"Sigrist"},{"full_name":"Sikkia, Glory","last_name":"Sikkia","first_name":"Glory"},{"full_name":"Singleton, Andrew","first_name":"Andrew","last_name":"Singleton"},{"last_name":"Shaklan","first_name":"Stuart","full_name":"Shaklan, Stuart"},{"full_name":"Smith, Scott","first_name":"Scott","last_name":"Smith"},{"full_name":"Southerd, Bart","last_name":"Southerd","first_name":"Bart"},{"full_name":"Stahl, Mark","last_name":"Stahl","first_name":"Mark"},{"last_name":"Steeves","first_name":"John","full_name":"Steeves, John"},{"last_name":"Sturges","first_name":"Brian","full_name":"Sturges, Brian"},{"full_name":"Sullivan, Chris","first_name":"Chris","last_name":"Sullivan"},{"first_name":"Hao","last_name":"Tang","full_name":"Tang, Hao"},{"last_name":"Taras","first_name":"Neil","full_name":"Taras, Neil"},{"full_name":"Tesch, Jonathan","last_name":"Tesch","first_name":"Jonathan"},{"first_name":"Melissa","last_name":"Therrell","full_name":"Therrell, Melissa"},{"full_name":"Tseng, Howard","last_name":"Tseng","first_name":"Howard"},{"first_name":"Marty","last_name":"Valente","full_name":"Valente, Marty"},{"full_name":"Buren, David Van","first_name":"David Van","last_name":"Buren"},{"last_name":"Villalvazo","first_name":"Juan","full_name":"Villalvazo, Juan"},{"last_name":"Warwick","first_name":"Steve","full_name":"Warwick, Steve"},{"full_name":"Webb, David","last_name":"Webb","first_name":"David"},{"full_name":"Westerhoff, Thomas","last_name":"Westerhoff","first_name":"Thomas"},{"first_name":"Rush","last_name":"Wofford","full_name":"Wofford, Rush"},{"full_name":"Wu, Gordon","first_name":"Gordon","last_name":"Wu"},{"last_name":"Woo","first_name":"Jahning","full_name":"Woo, Jahning"},{"full_name":"Wood, Milana","first_name":"Milana","last_name":"Wood"},{"full_name":"Ziemer, John","last_name":"Ziemer","first_name":"John"},{"first_name":"Giada","last_name":"Arney","full_name":"Arney, Giada"},{"full_name":"Anderson, Jay","last_name":"Anderson","first_name":"Jay"},{"last_name":"Jesús Maíz-Apellániz","first_name":"Jesús Maíz-Apellániz","full_name":"Jesús Maíz-Apellániz, Jesús Maíz-Apellániz"},{"last_name":"Bartlett","first_name":"James","full_name":"Bartlett, James"},{"last_name":"Belikov","first_name":"Ruslan","full_name":"Belikov, Ruslan"},{"full_name":"Bendek, Eduardo","last_name":"Bendek","first_name":"Eduardo"},{"full_name":"Cenko, Brad","last_name":"Cenko","first_name":"Brad"},{"first_name":"Ewan","last_name":"Douglas","full_name":"Douglas, Ewan"},{"full_name":"Dulz, Shannon","last_name":"Dulz","first_name":"Shannon"},{"last_name":"Evans","first_name":"Chris","full_name":"Evans, Chris"},{"last_name":"Faramaz","first_name":"Virginie","full_name":"Faramaz, Virginie"},{"last_name":"Feng","first_name":"Y. Katherina","full_name":"Feng, Y. Katherina"},{"first_name":"Harry","last_name":"Ferguson","full_name":"Ferguson, Harry"},{"last_name":"Follette","first_name":"Kate","full_name":"Follette, Kate"},{"first_name":"Saavik","last_name":"Ford","full_name":"Ford, Saavik"},{"first_name":"Miriam","last_name":"García","full_name":"García, Miriam"},{"last_name":"Geha","first_name":"Marla","full_name":"Geha, Marla"},{"full_name":"Gelino, Dawn","last_name":"Gelino","first_name":"Dawn"},{"id":"d0648d0c-0f64-11ee-a2e0-dd0faa2e4f7d","orcid":"0000-0002-6960-6911","first_name":"Ylva Louise Linsdotter","last_name":"Götberg","full_name":"Götberg, Ylva Louise Linsdotter"},{"first_name":"Sergi","last_name":"Hildebrandt","full_name":"Hildebrandt, Sergi"},{"full_name":"Hu, Renyu","first_name":"Renyu","last_name":"Hu"},{"last_name":"Jahnke","first_name":"Knud","full_name":"Jahnke, Knud"},{"full_name":"Kennedy, Grant","first_name":"Grant","last_name":"Kennedy"},{"first_name":"Laura","last_name":"Kreidberg","full_name":"Kreidberg, Laura"},{"last_name":"Isella","first_name":"Andrea","full_name":"Isella, Andrea"},{"last_name":"Lopez","first_name":"Eric","full_name":"Lopez, Eric"},{"full_name":"Marchis, Franck","last_name":"Marchis","first_name":"Franck"},{"full_name":"Macri, Lucas","first_name":"Lucas","last_name":"Macri"},{"full_name":"Marley, Mark","last_name":"Marley","first_name":"Mark"},{"last_name":"Matzko","first_name":"William","full_name":"Matzko, William"},{"full_name":"Mazoyer, Johan","first_name":"Johan","last_name":"Mazoyer"},{"full_name":"McCandliss, Stephan","first_name":"Stephan","last_name":"McCandliss"},{"last_name":"Meshkat","first_name":"Tiffany","full_name":"Meshkat, Tiffany"},{"full_name":"Mordasini, Christoph","first_name":"Christoph","last_name":"Mordasini"},{"last_name":"Morris","first_name":"Patrick","full_name":"Morris, Patrick"},{"full_name":"Nielsen, Eric","last_name":"Nielsen","first_name":"Eric"},{"full_name":"Newman, Patrick","first_name":"Patrick","last_name":"Newman"},{"full_name":"Petigura, Erik","first_name":"Erik","last_name":"Petigura"},{"last_name":"Postman","first_name":"Marc","full_name":"Postman, Marc"},{"full_name":"Reines, Amy","last_name":"Reines","first_name":"Amy"},{"full_name":"Roberge, Aki","last_name":"Roberge","first_name":"Aki"},{"full_name":"Roederer, Ian","first_name":"Ian","last_name":"Roederer"},{"full_name":"Ruane, Garreth","last_name":"Ruane","first_name":"Garreth"},{"last_name":"Schwieterman","first_name":"Edouard","full_name":"Schwieterman, Edouard"},{"first_name":"Dan","last_name":"Sirbu","full_name":"Sirbu, Dan"},{"full_name":"Spalding, Christopher","first_name":"Christopher","last_name":"Spalding"},{"full_name":"Teplitz, Harry","first_name":"Harry","last_name":"Teplitz"},{"first_name":"Jason","last_name":"Tumlinson","full_name":"Tumlinson, Jason"},{"first_name":"Neal","last_name":"Turner","full_name":"Turner, Neal"},{"full_name":"Werk, Jessica","first_name":"Jessica","last_name":"Werk"},{"full_name":"Wofford, Aida","last_name":"Wofford","first_name":"Aida"},{"full_name":"Wyatt, Mark","first_name":"Mark","last_name":"Wyatt"},{"full_name":"Young, Amber","first_name":"Amber","last_name":"Young"},{"full_name":"Zellem, Rob","first_name":"Rob","last_name":"Zellem"}],"publication_status":"submitted","status":"public","title":"The habitable exoplanet observatory (HabEx) mission concept study final report","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14095","year":"2020","article_processing_charge":"No","day":"18","month":"01","language":[{"iso":"eng"}],"doi":"10.48550/arXiv.2001.06683","date_published":"2020-01-18T00:00:00Z","main_file_link":[{"url":" https://doi.org/10.48550/arXiv.2001.06683","open_access":"1"}],"oa":1,"external_id":{"arxiv":["2001.06683"]},"citation":{"mla":"Gaudi, B. Scott, et al. “The Habitable Exoplanet Observatory (HabEx) Mission Concept Study Final Report.” ArXiv, 2001.06683, doi:10.48550/arXiv.2001.06683.","short":"B.S. Gaudi, S. Seager, B. Mennesson, A. Kiessling, K. Warfield, K. Cahoy, J.T. Clarke, S.D.-G. Shawn Domagal-Goldman, L. Feinberg, O. Guyon, J. Kasdin, D. Mawet, P. Plavchan, T. Robinson, L. Rogers, P. Scowen, R. Somerville, K. Stapelfeldt, C. Stark, D. Stern, M. Turnbull, R. Amini, G. Kuan, S. Martin, R. Morgan, D. Redding, H.P. Stahl, R. Webb, O.A.-S. Oscar Alvarez-Salazar, W.L. Arnold, M. Arya, B. Balasubramanian, M. Baysinger, R. Bell, C. Below, J. Benson, L. Blais, J. Booth, R. Bourgeois, C. Bradford, A. Brewer, T. Brooks, E. Cady, M. Caldwell, R. Calvet, S. Carr, D. Chan, V. Cormarkovic, K. Coste, C. Cox, R. Danner, J. Davis, L. Dewell, L. Dorsett, D. Dunn, M. East, M. Effinger, R. Eng, G. Freebury, J. Garcia, J. Gaskin, S. Greene, J. Hennessy, E. Hilgemann, B. Hood, W. Holota, S. Howe, P. Huang, T. Hull, R. Hunt, K. Hurd, S. Johnson, A. Kissil, B. Knight, D. Kolenz, O. Kraus, J. Krist, M. Li, D. Lisman, M. Mandic, J. Mann, L. Marchen, C.M.-R. Colleen Marrese-Reading, J. McCready, J. McGown, J. Missun, A. Miyaguchi, B. Moore, B. Nemati, S. Nikzad, J. Nissen, M. Novicki, T. Perrine, C. Pineda, O. Polanco, D. Putnam, A. Qureshi, M. Richards, A.J.E. Riggs, M. Rodgers, M. Rud, N. Saini, D. Scalisi, D. Scharf, K. Schulz, G. Serabyn, N. Sigrist, G. Sikkia, A. Singleton, S. Shaklan, S. Smith, B. Southerd, M. Stahl, J. Steeves, B. Sturges, C. Sullivan, H. Tang, N. Taras, J. Tesch, M. Therrell, H. Tseng, M. Valente, D.V. Buren, J. Villalvazo, S. Warwick, D. Webb, T. Westerhoff, R. Wofford, G. Wu, J. Woo, M. Wood, J. Ziemer, G. Arney, J. Anderson, J.M.-A. Jesús Maíz-Apellániz, J. Bartlett, R. Belikov, E. Bendek, B. Cenko, E. Douglas, S. Dulz, C. Evans, V. Faramaz, Y.K. Feng, H. Ferguson, K. Follette, S. Ford, M. García, M. Geha, D. Gelino, Y.L.L. Götberg, S. Hildebrandt, R. Hu, K. Jahnke, G. Kennedy, L. Kreidberg, A. Isella, E. Lopez, F. Marchis, L. Macri, M. Marley, W. Matzko, J. Mazoyer, S. McCandliss, T. Meshkat, C. Mordasini, P. Morris, E. Nielsen, P. Newman, E. Petigura, M. Postman, A. Reines, A. Roberge, I. Roederer, G. Ruane, E. Schwieterman, D. Sirbu, C. Spalding, H. Teplitz, J. Tumlinson, N. Turner, J. Werk, A. Wofford, M. Wyatt, A. Young, R. Zellem, ArXiv (n.d.).","chicago":"Gaudi, B. Scott, Sara Seager, Bertrand Mennesson, Alina Kiessling, Keith Warfield, Kerri Cahoy, John T. Clarke, et al. “The Habitable Exoplanet Observatory (HabEx) Mission Concept Study Final Report.” ArXiv, n.d. https://doi.org/10.48550/arXiv.2001.06683.","ama":"Gaudi BS, Seager S, Mennesson B, et al. The habitable exoplanet observatory (HabEx) mission concept study final report. arXiv. doi:10.48550/arXiv.2001.06683","ista":"Gaudi BS et al. The habitable exoplanet observatory (HabEx) mission concept study final report. arXiv, 2001.06683.","apa":"Gaudi, B. S., Seager, S., Mennesson, B., Kiessling, A., Warfield, K., Cahoy, K., … Zellem, R. (n.d.). The habitable exoplanet observatory (HabEx) mission concept study final report. arXiv. https://doi.org/10.48550/arXiv.2001.06683","ieee":"B. S. Gaudi et al., “The habitable exoplanet observatory (HabEx) mission concept study final report,” arXiv. ."},"publication":"arXiv"},{"title":"The Moran process on 2-chromatic graphs","ddc":["000"],"status":"public","intvolume":" 16","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"8767","oa_version":"Published Version","file":[{"access_level":"open_access","file_name":"2020_PlosCompBio_Kaveh.pdf","creator":"dernst","file_size":2498594,"content_type":"application/pdf","file_id":"8768","relation":"main_file","success":1,"checksum":"555456dd0e47bcf9e0994bcb95577e88","date_updated":"2020-11-18T07:26:10Z","date_created":"2020-11-18T07:26:10Z"}],"type":"journal_article","abstract":[{"text":"Resources are rarely distributed uniformly within a population. Heterogeneity in the concentration of a drug, the quality of breeding sites, or wealth can all affect evolutionary dynamics. In this study, we represent a collection of properties affecting the fitness at a given location using a color. A green node is rich in resources while a red node is poorer. More colors can represent a broader spectrum of resource qualities. For a population evolving according to the birth-death Moran model, the first question we address is which structures, identified by graph connectivity and graph coloring, are evolutionarily equivalent. We prove that all properly two-colored, undirected, regular graphs are evolutionarily equivalent (where “properly colored” means that no two neighbors have the same color). We then compare the effects of background heterogeneity on properly two-colored graphs to those with alternative schemes in which the colors are permuted. Finally, we discuss dynamic coloring as a model for spatiotemporal resource fluctuations, and we illustrate that random dynamic colorings often diminish the effects of background heterogeneity relative to a proper two-coloring.","lang":"eng"}],"issue":"11","article_type":"original","publication":"PLOS Computational Biology","citation":{"ieee":"K. Kaveh, A. McAvoy, K. Chatterjee, and M. A. Nowak, “The Moran process on 2-chromatic graphs,” PLOS Computational Biology, vol. 16, no. 11. Public Library of Science, 2020.","apa":"Kaveh, K., McAvoy, A., Chatterjee, K., & Nowak, M. A. (2020). The Moran process on 2-chromatic graphs. PLOS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1008402","ista":"Kaveh K, McAvoy A, Chatterjee K, Nowak MA. 2020. The Moran process on 2-chromatic graphs. PLOS Computational Biology. 16(11), e1008402.","ama":"Kaveh K, McAvoy A, Chatterjee K, Nowak MA. The Moran process on 2-chromatic graphs. PLOS Computational Biology. 2020;16(11). doi:10.1371/journal.pcbi.1008402","chicago":"Kaveh, Kamran, Alex McAvoy, Krishnendu Chatterjee, and Martin A. Nowak. “The Moran Process on 2-Chromatic Graphs.” PLOS Computational Biology. Public Library of Science, 2020. https://doi.org/10.1371/journal.pcbi.1008402.","short":"K. Kaveh, A. McAvoy, K. Chatterjee, M.A. Nowak, PLOS Computational Biology 16 (2020).","mla":"Kaveh, Kamran, et al. “The Moran Process on 2-Chromatic Graphs.” PLOS Computational Biology, vol. 16, no. 11, e1008402, Public Library of Science, 2020, doi:10.1371/journal.pcbi.1008402."},"date_published":"2020-11-05T00:00:00Z","keyword":["Ecology","Modelling and Simulation","Computational Theory and Mathematics","Genetics","Ecology","Evolution","Behavior and Systematics","Molecular Biology","Cellular and Molecular Neuroscience"],"scopus_import":"1","day":"05","has_accepted_license":"1","article_processing_charge":"No","publication_status":"published","publisher":"Public Library of Science","department":[{"_id":"KrCh"}],"acknowledgement":"We thank Igor Erovenko for many helpful comments on an earlier version of this paper. : Army Research Laboratory (grant W911NF-18-2-0265) (M.A.N.); the Bill & Melinda Gates Foundation (grant OPP1148627) (M.A.N.); the NVIDIA Corporation (A.M.). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.","year":"2020","date_updated":"2023-08-22T12:49:18Z","date_created":"2020-11-18T07:20:23Z","volume":16,"author":[{"last_name":"Kaveh","first_name":"Kamran","full_name":"Kaveh, Kamran"},{"last_name":"McAvoy","first_name":"Alex","full_name":"McAvoy, Alex"},{"full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","first_name":"Krishnendu","last_name":"Chatterjee"},{"first_name":"Martin A.","last_name":"Nowak","full_name":"Nowak, Martin A."}],"article_number":"e1008402","file_date_updated":"2020-11-18T07:26:10Z","quality_controlled":"1","isi":1,"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000591317200004"]},"language":[{"iso":"eng"}],"doi":"10.1371/journal.pcbi.1008402","month":"11","publication_identifier":{"eissn":["1553-7358"],"issn":["1553-734X"]}},{"article_number":"9314994","ec_funded":1,"year":"2020","department":[{"_id":"ToHe"}],"publisher":"IEEE","publication_status":"published","author":[{"first_name":"Marcelo","last_name":"Forets","full_name":"Forets, Marcelo"},{"full_name":"Freire, Daniel","first_name":"Daniel","last_name":"Freire"},{"full_name":"Schilling, Christian","orcid":"0000-0003-3658-1065","id":"3A2F4DCE-F248-11E8-B48F-1D18A9856A87","last_name":"Schilling","first_name":"Christian"}],"date_updated":"2023-08-22T12:48:18Z","date_created":"2020-11-10T07:04:57Z","publication_identifier":{"isbn":["9781728191485"]},"month":"12","oa":1,"external_id":{"arxiv":["2006.12325"],"isi":["000661920400013"]},"main_file_link":[{"url":"https://arxiv.org/abs/2006.12325","open_access":"1"}],"project":[{"grant_number":"Z211","_id":"25F42A32-B435-11E9-9278-68D0E5697425","name":"The Wittgenstein Prize","call_identifier":"FWF"},{"call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411"}],"isi":1,"quality_controlled":"1","doi":"10.1109/MEMOCODE51338.2020.9314994","conference":{"name":"MEMOCODE: Conference on Formal Methods and Models for System Design","end_date":"2020-12-04","location":"Virtual Conference","start_date":"2020-12-02"},"language":[{"iso":"eng"}],"type":"conference","abstract":[{"lang":"eng","text":"Efficiently handling time-triggered and possibly nondeterministic switches\r\nfor hybrid systems reachability is a challenging task. In this paper we present\r\nan approach based on conservative set-based enclosure of the dynamics that can\r\nhandle systems with uncertain parameters and inputs, where the uncertainties\r\nare bound to given intervals. The method is evaluated on the plant model of an\r\nexperimental electro-mechanical braking system with periodic controller. In\r\nthis model, the fast-switching controller dynamics requires simulation time\r\nscales of the order of nanoseconds. Accurate set-based computations for\r\nrelatively large time horizons are known to be expensive. However, by\r\nappropriately decoupling the time variable with respect to the spatial\r\nvariables, and enclosing the uncertain parameters using interval matrix maps\r\nacting on zonotopes, we show that the computation time can be lowered to 5000\r\ntimes faster with respect to previous works. This is a step forward in formal\r\nverification of hybrid systems because reduced run-times allow engineers to\r\nintroduce more expressiveness in their models with a relatively inexpensive\r\ncomputational cost."}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"8750","status":"public","title":"Efficient reachability analysis of parametric linear hybrid systems with time-triggered transitions","oa_version":"Preprint","scopus_import":"1","article_processing_charge":"No","day":"04","citation":{"apa":"Forets, M., Freire, D., & Schilling, C. (2020). Efficient reachability analysis of parametric linear hybrid systems with time-triggered transitions. In 18th ACM-IEEE International Conference on Formal Methods and Models for System Design. Virtual Conference: IEEE. https://doi.org/10.1109/MEMOCODE51338.2020.9314994","ieee":"M. Forets, D. Freire, and C. Schilling, “Efficient reachability analysis of parametric linear hybrid systems with time-triggered transitions,” in 18th ACM-IEEE International Conference on Formal Methods and Models for System Design, Virtual Conference, 2020.","ista":"Forets M, Freire D, Schilling C. 2020. Efficient reachability analysis of parametric linear hybrid systems with time-triggered transitions. 18th ACM-IEEE International Conference on Formal Methods and Models for System Design. MEMOCODE: Conference on Formal Methods and Models for System Design, 9314994.","ama":"Forets M, Freire D, Schilling C. Efficient reachability analysis of parametric linear hybrid systems with time-triggered transitions. In: 18th ACM-IEEE International Conference on Formal Methods and Models for System Design. IEEE; 2020. doi:10.1109/MEMOCODE51338.2020.9314994","chicago":"Forets, Marcelo, Daniel Freire, and Christian Schilling. “Efficient Reachability Analysis of Parametric Linear Hybrid Systems with Time-Triggered Transitions.” In 18th ACM-IEEE International Conference on Formal Methods and Models for System Design. IEEE, 2020. https://doi.org/10.1109/MEMOCODE51338.2020.9314994.","short":"M. Forets, D. Freire, C. Schilling, in:, 18th ACM-IEEE International Conference on Formal Methods and Models for System Design, IEEE, 2020.","mla":"Forets, Marcelo, et al. “Efficient Reachability Analysis of Parametric Linear Hybrid Systems with Time-Triggered Transitions.” 18th ACM-IEEE International Conference on Formal Methods and Models for System Design, 9314994, IEEE, 2020, doi:10.1109/MEMOCODE51338.2020.9314994."},"publication":"18th ACM-IEEE International Conference on Formal Methods and Models for System Design","date_published":"2020-12-04T00:00:00Z"},{"oa_version":"Published Version","file":[{"access_level":"open_access","file_name":"2020_JourStatPhysics_Maas.pdf","content_type":"application/pdf","file_size":753596,"creator":"dernst","relation":"main_file","file_id":"9087","checksum":"bc2b63a90197b97cbc73eccada4639f5","success":1,"date_updated":"2021-02-04T10:29:11Z","date_created":"2021-02-04T10:29:11Z"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"8758","title":"Modeling of chemical reaction systems with detailed balance using gradient structures","ddc":["510"],"status":"public","intvolume":" 181","abstract":[{"lang":"eng","text":"We consider various modeling levels for spatially homogeneous chemical reaction systems, namely the chemical master equation, the chemical Langevin dynamics, and the reaction-rate equation. Throughout we restrict our study to the case where the microscopic system satisfies the detailed-balance condition. The latter allows us to enrich the systems with a gradient structure, i.e. the evolution is given by a gradient-flow equation. We present the arising links between the associated gradient structures that are driven by the relative entropy of the detailed-balance steady state. The limit of large volumes is studied in the sense of evolutionary Γ-convergence of gradient flows. Moreover, we use the gradient structures to derive hybrid models for coupling different modeling levels."}],"issue":"6","type":"journal_article","date_published":"2020-12-01T00:00:00Z","publication":"Journal of Statistical Physics","citation":{"chicago":"Maas, Jan, and Alexander Mielke. “Modeling of Chemical Reaction Systems with Detailed Balance Using Gradient Structures.” Journal of Statistical Physics. Springer Nature, 2020. https://doi.org/10.1007/s10955-020-02663-4.","short":"J. Maas, A. Mielke, Journal of Statistical Physics 181 (2020) 2257–2303.","mla":"Maas, Jan, and Alexander Mielke. “Modeling of Chemical Reaction Systems with Detailed Balance Using Gradient Structures.” Journal of Statistical Physics, vol. 181, no. 6, Springer Nature, 2020, pp. 2257–303, doi:10.1007/s10955-020-02663-4.","ieee":"J. Maas and A. Mielke, “Modeling of chemical reaction systems with detailed balance using gradient structures,” Journal of Statistical Physics, vol. 181, no. 6. Springer Nature, pp. 2257–2303, 2020.","apa":"Maas, J., & Mielke, A. (2020). Modeling of chemical reaction systems with detailed balance using gradient structures. Journal of Statistical Physics. Springer Nature. https://doi.org/10.1007/s10955-020-02663-4","ista":"Maas J, Mielke A. 2020. Modeling of chemical reaction systems with detailed balance using gradient structures. Journal of Statistical Physics. 181(6), 2257–2303.","ama":"Maas J, Mielke A. Modeling of chemical reaction systems with detailed balance using gradient structures. Journal of Statistical Physics. 2020;181(6):2257-2303. doi:10.1007/s10955-020-02663-4"},"article_type":"original","page":"2257-2303","day":"01","article_processing_charge":"No","has_accepted_license":"1","scopus_import":"1","author":[{"full_name":"Maas, Jan","first_name":"Jan","last_name":"Maas","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0845-1338"},{"full_name":"Mielke, Alexander","first_name":"Alexander","last_name":"Mielke"}],"date_updated":"2023-08-22T13:24:27Z","date_created":"2020-11-15T23:01:18Z","volume":181,"acknowledgement":"The research of A.M. was partially supported by the Deutsche Forschungsgemeinschaft (DFG) via the Collaborative Research Center SFB 1114 Scaling Cascades in Complex Systems (Project No. 235221301), through the Subproject C05 Effective models for materials and interfaces with multiple scales. J.M. gratefully acknowledges support by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant Agreement No. 716117), and by the Austrian Science Fund (FWF), Project SFB F65. The authors thank Christof Schütte, Robert I. A. Patterson, and Stefanie Winkelmann for helpful and stimulating discussions. Open access funding provided by Austrian Science Fund (FWF).","year":"2020","publication_status":"published","publisher":"Springer Nature","department":[{"_id":"JaMa"}],"file_date_updated":"2021-02-04T10:29:11Z","ec_funded":1,"doi":"10.1007/s10955-020-02663-4","language":[{"iso":"eng"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000587107200002"],"arxiv":["2004.02831"]},"oa":1,"quality_controlled":"1","isi":1,"project":[{"_id":"256E75B8-B435-11E9-9278-68D0E5697425","grant_number":"716117","call_identifier":"H2020","name":"Optimal Transport and Stochastic Dynamics"},{"call_identifier":"FWF","name":"Taming Complexity in Partial Di erential Systems","grant_number":" F06504","_id":"260482E2-B435-11E9-9278-68D0E5697425"}],"month":"12","publication_identifier":{"issn":["00224715"],"eissn":["15729613"]}},{"author":[{"last_name":"Peruzzo","first_name":"Matilda","orcid":"0000-0002-3415-4628","id":"3F920B30-F248-11E8-B48F-1D18A9856A87","full_name":"Peruzzo, Matilda"},{"id":"42F71B44-F248-11E8-B48F-1D18A9856A87","first_name":"Andrea","last_name":"Trioni","full_name":"Trioni, Andrea"},{"full_name":"Hassani, Farid","id":"2AED110C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6937-5773","first_name":"Farid","last_name":"Hassani"},{"full_name":"Zemlicka, Martin","id":"2DCF8DE6-F248-11E8-B48F-1D18A9856A87","first_name":"Martin","last_name":"Zemlicka"},{"last_name":"Fink","first_name":"Johannes M","orcid":"0000-0001-8112-028X","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","full_name":"Fink, Johannes M"}],"related_material":{"record":[{"id":"8755","status":"public","relation":"used_in_publication"}]},"date_updated":"2023-08-22T13:23:57Z","date_created":"2023-05-23T16:42:30Z","oa_version":"Published Version","_id":"13070","year":"2020","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Surpassing the resistance quantum with a geometric superinductor","status":"public","ddc":["530"],"department":[{"_id":"JoFi"}],"publisher":"Zenodo","abstract":[{"text":"This dataset comprises all data shown in the figures of the submitted article \"Surpassing the resistance quantum with a geometric superinductor\". Additional raw data are available from the corresponding author on reasonable request.","lang":"eng"}],"type":"research_data_reference","date_published":"2020-09-27T00:00:00Z","doi":"10.5281/ZENODO.4052882","main_file_link":[{"open_access":"1","url":"https://doi.org/10.5281/zenodo.4052883"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"citation":{"mla":"Peruzzo, Matilda, et al. Surpassing the Resistance Quantum with a Geometric Superinductor. Zenodo, 2020, doi:10.5281/ZENODO.4052882.","short":"M. Peruzzo, A. Trioni, F. Hassani, M. Zemlicka, J.M. Fink, (2020).","chicago":"Peruzzo, Matilda, Andrea Trioni, Farid Hassani, Martin Zemlicka, and Johannes M Fink. “Surpassing the Resistance Quantum with a Geometric Superinductor.” Zenodo, 2020. https://doi.org/10.5281/ZENODO.4052882.","ama":"Peruzzo M, Trioni A, Hassani F, Zemlicka M, Fink JM. Surpassing the resistance quantum with a geometric superinductor. 2020. doi:10.5281/ZENODO.4052882","ista":"Peruzzo M, Trioni A, Hassani F, Zemlicka M, Fink JM. 2020. Surpassing the resistance quantum with a geometric superinductor, Zenodo, 10.5281/ZENODO.4052882.","ieee":"M. Peruzzo, A. Trioni, F. Hassani, M. Zemlicka, and J. M. Fink, “Surpassing the resistance quantum with a geometric superinductor.” Zenodo, 2020.","apa":"Peruzzo, M., Trioni, A., Hassani, F., Zemlicka, M., & Fink, J. M. (2020). Surpassing the resistance quantum with a geometric superinductor. Zenodo. https://doi.org/10.5281/ZENODO.4052882"},"month":"09","day":"27","article_processing_charge":"No"}]