[{"extern":"1","issue":"4","abstract":[{"lang":"eng","text":"Diffusiophoretic motion of colloids and macromolecules under salt gradients exhibits a logarithmic-sensing, i.e. the particle velocity is proportional to the spatial gradient of the logarithm of the salt concentration, as VDP = DDP∇logc. Here we explore experimentally the implications of this log-sensing behavior, on the basis of a hydrogel microfluidic device allowing to build spatially and temporally controlled gradients. We first demonstrate that the non-linearity of the salt-taxis leads to a trapping of particles under concentration gradient oscillations via a rectification of the motion. As an alternative, we make use of the high sensitivity of diffusiophoretic migration to vanishing salt concentration due to the log-sensing: in a counter-intuitive way, a vanishing gradient can lead to measurable velocity provided that the solute concentration is low enough, thus keeping ∇c/c finite. We show that this leads to a strong segregation of particles in osmotic shock configuration, resulting from a step change of the salt concentration at the boundaries. These various phenomena are rationalized on the basis of a theoretical description for the time-dependent Smoluchowski equation for the colloidal density."}],"type":"journal_article","oa_version":"None","volume":8,"date_created":"2021-02-01T13:43:10Z","date_updated":"2023-02-23T13:47:31Z","author":[{"full_name":"Palacci, Jérémie A","last_name":"Palacci","first_name":"Jérémie A","orcid":"0000-0002-7253-9465","id":"8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d"},{"full_name":"Cottin-Bizonne, Cécile","last_name":"Cottin-Bizonne","first_name":"Cécile"},{"last_name":"Ybert","first_name":"Christophe","full_name":"Ybert, Christophe"},{"full_name":"Bocquet, Lydéric","first_name":"Lydéric","last_name":"Bocquet"}],"publisher":"Royal Society of Chemistry","intvolume":" 8","publication_status":"published","title":"Osmotic traps for colloids and macromolecules based on logarithmic sensing in salt taxis","status":"public","year":"2012","_id":"9049","user_id":"D865714E-FA4E-11E9-B85B-F5C5E5697425","article_processing_charge":"No","publication_identifier":{"eissn":["1744-6848"],"issn":["1744-683X"]},"month":"01","day":"28","scopus_import":"1","language":[{"iso":"eng"}],"doi":"10.1039/c1sm06395b","date_published":"2012-01-28T00:00:00Z","page":"980-994","quality_controlled":"1","article_type":"original","citation":{"apa":"Palacci, J. A., Cottin-Bizonne, C., Ybert, C., & Bocquet, L. (2012). Osmotic traps for colloids and macromolecules based on logarithmic sensing in salt taxis. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/c1sm06395b","ieee":"J. A. Palacci, C. Cottin-Bizonne, C. Ybert, and L. Bocquet, “Osmotic traps for colloids and macromolecules based on logarithmic sensing in salt taxis,” Soft Matter, vol. 8, no. 4. Royal Society of Chemistry, pp. 980–994, 2012.","ista":"Palacci JA, Cottin-Bizonne C, Ybert C, Bocquet L. 2012. Osmotic traps for colloids and macromolecules based on logarithmic sensing in salt taxis. Soft Matter. 8(4), 980–994.","ama":"Palacci JA, Cottin-Bizonne C, Ybert C, Bocquet L. Osmotic traps for colloids and macromolecules based on logarithmic sensing in salt taxis. Soft Matter. 2012;8(4):980-994. doi:10.1039/c1sm06395b","chicago":"Palacci, Jérémie A, Cécile Cottin-Bizonne, Christophe Ybert, and Lydéric Bocquet. “Osmotic Traps for Colloids and Macromolecules Based on Logarithmic Sensing in Salt Taxis.” Soft Matter. Royal Society of Chemistry, 2012. https://doi.org/10.1039/c1sm06395b.","short":"J.A. Palacci, C. Cottin-Bizonne, C. Ybert, L. Bocquet, Soft Matter 8 (2012) 980–994.","mla":"Palacci, Jérémie A., et al. “Osmotic Traps for Colloids and Macromolecules Based on Logarithmic Sensing in Salt Taxis.” Soft Matter, vol. 8, no. 4, Royal Society of Chemistry, 2012, pp. 980–94, doi:10.1039/c1sm06395b."},"publication":"Soft Matter"},{"language":[{"iso":"eng"}],"doi":"10.1103/PhysRevLett.109.018101","date_published":"2012-07-03T00:00:00Z","publication":"Physical Review Letters","main_file_link":[{"url":"https://arxiv.org/abs/1207.1516","open_access":"1"}],"citation":{"ama":"Hannezo EB, Prost J, Joanny J. Mechanical instabilities of biological tubes. Physical Review Letters. 2012;109(1). doi:10.1103/PhysRevLett.109.018101","ista":"Hannezo EB, Prost J, Joanny J. 2012. Mechanical instabilities of biological tubes. Physical Review Letters. 109(1).","ieee":"E. B. Hannezo, J. Prost, and J. Joanny, “Mechanical instabilities of biological tubes,” Physical Review Letters, vol. 109, no. 1. American Physical Society, 2012.","apa":"Hannezo, E. B., Prost, J., & Joanny, J. (2012). Mechanical instabilities of biological tubes. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.109.018101","mla":"Hannezo, Edouard B., et al. “Mechanical Instabilities of Biological Tubes.” Physical Review Letters, vol. 109, no. 1, American Physical Society, 2012, doi:10.1103/PhysRevLett.109.018101.","short":"E.B. Hannezo, J. Prost, J. Joanny, Physical Review Letters 109 (2012).","chicago":"Hannezo, Edouard B, Jacques Prost, and Jean Joanny. “Mechanical Instabilities of Biological Tubes.” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/PhysRevLett.109.018101."},"external_id":{"arxiv":["1207.1516"]},"oa":1,"month":"07","day":"03","article_processing_charge":"No","date_created":"2018-12-11T11:49:13Z","date_updated":"2021-01-12T08:21:56Z","volume":109,"oa_version":"Preprint","author":[{"last_name":"Hannezo","first_name":"Edouard B","orcid":"0000-0001-6005-1561","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","full_name":"Hannezo, Edouard B"},{"full_name":"Prost, Jacques","last_name":"Prost","first_name":"Jacques"},{"full_name":"Joanny, Jean","last_name":"Joanny","first_name":"Jean"}],"title":"Mechanical instabilities of biological tubes","status":"public","publication_status":"published","publisher":"American Physical Society","intvolume":" 109","year":"2012","_id":"922","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","abstract":[{"lang":"eng","text":"We study theoretically the morphologies of biological tubes affected by various pathologies. When epithelial cells grow, the negative tension produced by their division provokes a buckling instability. Several shapes are investigated: varicose, dilated, sinuous, or sausagelike. They are all found in pathologies of tracheal, renal tubes, or arteries. The final shape depends crucially on the mechanical parameters of the tissues: Young's modulus, wall-to-lumen ratio, homeostatic pressure. We argue that since tissues must be in quasistatic mechanical equilibrium, abnormal shapes convey information as to what causes the pathology. We calculate a phase diagram of tubular instabilities which could be a helpful guide for investigating the underlying genetic regulation."}],"issue":"1","publist_id":"6519","type":"journal_article"},{"date_published":"2012-03-22T00:00:00Z","citation":{"ama":"Kim SY, Lee J, Eshed-Williams L, Zilberman D, Sung ZR. EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development. PLoS Genetics. 2012;8(3). doi:10.1371/journal.pgen.1002512","ista":"Kim SY, Lee J, Eshed-Williams L, Zilberman D, Sung ZR. 2012. EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development. PLoS Genetics. 8(3), e1002512.","apa":"Kim, S. Y., Lee, J., Eshed-Williams, L., Zilberman, D., & Sung, Z. R. (2012). EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development. PLoS Genetics. Public Library of Science. https://doi.org/10.1371/journal.pgen.1002512","ieee":"S. Y. Kim, J. Lee, L. Eshed-Williams, D. Zilberman, and Z. R. Sung, “EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development,” PLoS Genetics, vol. 8, no. 3. Public Library of Science, 2012.","mla":"Kim, Sang Yeol, et al. “EMF1 and PRC2 Cooperate to Repress Key Regulators of Arabidopsis Development.” PLoS Genetics, vol. 8, no. 3, e1002512, Public Library of Science, 2012, doi:10.1371/journal.pgen.1002512.","short":"S.Y. Kim, J. Lee, L. Eshed-Williams, D. Zilberman, Z.R. Sung, PLoS Genetics 8 (2012).","chicago":"Kim, Sang Yeol, Jungeun Lee, Leor Eshed-Williams, Daniel Zilberman, and Z. Renee Sung. “EMF1 and PRC2 Cooperate to Repress Key Regulators of Arabidopsis Development.” PLoS Genetics. Public Library of Science, 2012. https://doi.org/10.1371/journal.pgen.1002512."},"publication":"PLoS Genetics","article_type":"original","article_processing_charge":"No","day":"22","scopus_import":"1","oa_version":"Published Version","_id":"9499","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","intvolume":" 8","status":"public","title":"EMF1 and PRC2 cooperate to repress key regulators of Arabidopsis development","issue":"3","abstract":[{"lang":"eng","text":"EMBRYONIC FLOWER1 (EMF1) is a plant-specific gene crucial to Arabidopsis vegetative development. Loss of function mutants in the EMF1 gene mimic the phenotype caused by mutations in Polycomb Group protein (PcG) genes, which encode epigenetic repressors that regulate many aspects of eukaryotic development. In Arabidopsis, Polycomb Repressor Complex 2 (PRC2), made of PcG proteins, catalyzes trimethylation of lysine 27 on histone H3 (H3K27me3) and PRC1-like proteins catalyze H2AK119 ubiquitination. Despite functional similarity to PcG proteins, EMF1 lacks sequence homology with known PcG proteins; thus, its role in the PcG mechanism is unclear. To study the EMF1 functions and its mechanism of action, we performed genome-wide mapping of EMF1 binding and H3K27me3 modification sites in Arabidopsis seedlings. The EMF1 binding pattern is similar to that of H3K27me3 modification on the chromosomal and genic level. ChIPOTLe peak finding and clustering analyses both show that the highly trimethylated genes also have high enrichment levels of EMF1 binding, termed EMF1_K27 genes. EMF1 interacts with regulatory genes, which are silenced to allow vegetative growth, and with genes specifying cell fates during growth and differentiation. H3K27me3 marks not only these genes but also some genes that are involved in endosperm development and maternal effects. Transcriptome analysis, coupled with the H3K27me3 pattern, of EMF1_K27 genes in emf1 and PRC2 mutants showed that EMF1 represses gene activities via diverse mechanisms and plays a novel role in the PcG mechanism."}],"type":"journal_article","doi":"10.1371/journal.pgen.1002512","language":[{"iso":"eng"}],"external_id":{"pmid":["22457632"]},"oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1371/journal.pgen.1002512"}],"quality_controlled":"1","publication_identifier":{"issn":["1553-7390"],"eissn":["1553-7404"]},"month":"03","author":[{"full_name":"Kim, Sang Yeol","last_name":"Kim","first_name":"Sang Yeol"},{"full_name":"Lee, Jungeun","first_name":"Jungeun","last_name":"Lee"},{"full_name":"Eshed-Williams, Leor","first_name":"Leor","last_name":"Eshed-Williams"},{"full_name":"Zilberman, Daniel","last_name":"Zilberman","first_name":"Daniel","orcid":"0000-0002-0123-8649","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1"},{"last_name":"Sung","first_name":"Z. Renee","full_name":"Sung, Z. Renee"}],"volume":8,"date_created":"2021-06-07T11:07:56Z","date_updated":"2021-12-14T08:31:14Z","pmid":1,"year":"2012","publisher":"Public Library of Science","department":[{"_id":"DaZi"}],"publication_status":"published","extern":"1","article_number":"e1002512"},{"publication":"PLoS Genetics","citation":{"short":"D. Coleman-Derr, D. Zilberman, PLoS Genetics 8 (2012).","mla":"Coleman-Derr, Devin, and Daniel Zilberman. “Deposition of Histone Variant H2A.Z within Gene Bodies Regulates Responsive Genes.” PLoS Genetics, vol. 8, no. 10, e1002988, Public Library of Science, 2012, doi:10.1371/journal.pgen.1002988.","chicago":"Coleman-Derr, Devin, and Daniel Zilberman. “Deposition of Histone Variant H2A.Z within Gene Bodies Regulates Responsive Genes.” PLoS Genetics. Public Library of Science, 2012. https://doi.org/10.1371/journal.pgen.1002988.","ama":"Coleman-Derr D, Zilberman D. Deposition of histone variant H2A.Z within gene bodies regulates responsive genes. PLoS Genetics. 2012;8(10). doi:10.1371/journal.pgen.1002988","ieee":"D. Coleman-Derr and D. Zilberman, “Deposition of histone variant H2A.Z within gene bodies regulates responsive genes,” PLoS Genetics, vol. 8, no. 10. Public Library of Science, 2012.","apa":"Coleman-Derr, D., & Zilberman, D. (2012). Deposition of histone variant H2A.Z within gene bodies regulates responsive genes. PLoS Genetics. Public Library of Science. https://doi.org/10.1371/journal.pgen.1002988","ista":"Coleman-Derr D, Zilberman D. 2012. Deposition of histone variant H2A.Z within gene bodies regulates responsive genes. PLoS Genetics. 8(10), e1002988."},"article_type":"original","date_published":"2012-10-11T00:00:00Z","scopus_import":"1","day":"11","article_processing_charge":"No","_id":"9497","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","status":"public","title":"Deposition of histone variant H2A.Z within gene bodies regulates responsive genes","intvolume":" 8","oa_version":"Published Version","type":"journal_article","abstract":[{"text":"The regulation of eukaryotic chromatin relies on interactions between many epigenetic factors, including histone modifications, DNA methylation, and the incorporation of histone variants. H2A.Z, one of the most conserved but enigmatic histone variants that is enriched at the transcriptional start sites of genes, has been implicated in a variety of chromosomal processes. Recently, we reported a genome-wide anticorrelation between H2A.Z and DNA methylation, an epigenetic hallmark of heterochromatin that has also been found in the bodies of active genes in plants and animals. Here, we investigate the basis of this anticorrelation using a novel h2a.z loss-of-function line in Arabidopsis thaliana. Through genome-wide bisulfite sequencing, we demonstrate that loss of H2A.Z in Arabidopsis has only a minor effect on the level or profile of DNA methylation in genes, and we propose that the global anticorrelation between DNA methylation and H2A.Z is primarily caused by the exclusion of H2A.Z from methylated DNA. RNA sequencing and genomic mapping of H2A.Z show that H2A.Z enrichment across gene bodies, rather than at the TSS, is correlated with lower transcription levels and higher measures of gene responsiveness. Loss of H2A.Z causes misregulation of many genes that are disproportionately associated with response to environmental and developmental stimuli. We propose that H2A.Z deposition in gene bodies promotes variability in levels and patterns of gene expression, and that a major function of genic DNA methylation is to exclude H2A.Z from constitutively expressed genes.","lang":"eng"}],"issue":"10","external_id":{"pmid":["23071449"]},"main_file_link":[{"url":"https://doi.org/10.1371/journal.pgen.1002988","open_access":"1"}],"oa":1,"quality_controlled":"1","doi":"10.1371/journal.pgen.1002988","language":[{"iso":"eng"}],"month":"10","publication_identifier":{"eissn":["1553-7404"],"issn":["1553-7390"]},"year":"2012","pmid":1,"publication_status":"published","publisher":"Public Library of Science","department":[{"_id":"DaZi"}],"author":[{"full_name":"Coleman-Derr, Devin","first_name":"Devin","last_name":"Coleman-Derr"},{"first_name":"Daniel","last_name":"Zilberman","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","orcid":"0000-0002-0123-8649","full_name":"Zilberman, Daniel"}],"date_updated":"2021-12-14T08:29:57Z","date_created":"2021-06-07T10:55:27Z","volume":8,"article_number":"e1002988","extern":"1"},{"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","_id":"9528","intvolume":" 22","title":"Regulation of biological accuracy, precision, and memory by plant chromatin organization","status":"public","oa_version":"None","type":"journal_article","issue":"2","abstract":[{"lang":"eng","text":"Accumulating evidence points toward diverse functions for plant chromatin. Remarkable progress has been made over the last few years in elucidating the mechanisms for a number of these functions. Activity of the histone demethylase IBM1 accurately targets DNA methylation to silent repeats and transposable elements, not to genes. A genetic screen uncovered the surprising role of H2A.Z-containing nucleosomes in sensing precise differences in ambient temperature and consequent gene regulation. Precise maintenance of chromosome number is assured by a histone modification that suppresses inappropriate DNA replication and by centromeric histone H3 regulation of chromosome segregation. Histones and noncoding RNAs regulate FLOWERING LOCUS C, the expression of which quantitatively measures the duration of cold exposure, functioning as memory of winter. These findings are a testament to the power of using plants to research chromatin organization, and demonstrate examples of how chromatin functions to achieve biological accuracy, precision, and memory."}],"citation":{"ama":"Huff JT, Zilberman D. Regulation of biological accuracy, precision, and memory by plant chromatin organization. Current Opinion in Genetics and Development. 2012;22(2):132-138. doi:10.1016/j.gde.2012.01.007","ista":"Huff JT, Zilberman D. 2012. Regulation of biological accuracy, precision, and memory by plant chromatin organization. Current Opinion in Genetics and Development. 22(2), 132–138.","apa":"Huff, J. T., & Zilberman, D. (2012). Regulation of biological accuracy, precision, and memory by plant chromatin organization. Current Opinion in Genetics and Development. Elsevier. https://doi.org/10.1016/j.gde.2012.01.007","ieee":"J. T. Huff and D. Zilberman, “Regulation of biological accuracy, precision, and memory by plant chromatin organization,” Current Opinion in Genetics and Development, vol. 22, no. 2. Elsevier, pp. 132–138, 2012.","mla":"Huff, Jason T., and Daniel Zilberman. “Regulation of Biological Accuracy, Precision, and Memory by Plant Chromatin Organization.” Current Opinion in Genetics and Development, vol. 22, no. 2, Elsevier, 2012, pp. 132–38, doi:10.1016/j.gde.2012.01.007.","short":"J.T. Huff, D. Zilberman, Current Opinion in Genetics and Development 22 (2012) 132–138.","chicago":"Huff, Jason T., and Daniel Zilberman. “Regulation of Biological Accuracy, Precision, and Memory by Plant Chromatin Organization.” Current Opinion in Genetics and Development. Elsevier, 2012. https://doi.org/10.1016/j.gde.2012.01.007."},"publication":"Current Opinion in Genetics and Development","page":"132-138","article_type":"review","date_published":"2012-04-01T00:00:00Z","scopus_import":"1","article_processing_charge":"No","pmid":1,"year":"2012","publisher":"Elsevier","department":[{"_id":"DaZi"}],"publication_status":"published","author":[{"full_name":"Huff, Jason T.","last_name":"Huff","first_name":"Jason T."},{"last_name":"Zilberman","first_name":"Daniel","orcid":"0000-0002-0123-8649","id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","full_name":"Zilberman, Daniel"}],"volume":22,"date_updated":"2021-12-14T08:32:38Z","date_created":"2021-06-08T08:58:52Z","extern":"1","external_id":{"pmid":["22336527"]},"quality_controlled":"1","doi":"10.1016/j.gde.2012.01.007","language":[{"iso":"eng"}],"publication_identifier":{"issn":["0959-437X"]},"month":"04"},{"day":"13","month":"12","quality_controlled":0,"publication":"Physical Review B - Condensed Matter and Materials Physics","citation":{"short":"S. Bieri, M. Serbyn, T. Senthil, P. Lee, Physical Review B - Condensed Matter and Materials Physics 86 (2012).","mla":"Bieri, Samuel, et al. “Paired Chiral Spin Liquid with a Fermi Surface in S=1 Model on the Triangular Lattice.” Physical Review B - Condensed Matter and Materials Physics, vol. 86, no. 22, American Physical Society, 2012, doi:10.1103/PhysRevB.86.224409.","chicago":"Bieri, Samuel, Maksym Serbyn, Todadri Senthil, and Patrick Lee. “Paired Chiral Spin Liquid with a Fermi Surface in S=1 Model on the Triangular Lattice.” Physical Review B - Condensed Matter and Materials Physics. American Physical Society, 2012. https://doi.org/10.1103/PhysRevB.86.224409.","ama":"Bieri S, Serbyn M, Senthil T, Lee P. Paired chiral spin liquid with a Fermi surface in S=1 model on the triangular lattice. Physical Review B - Condensed Matter and Materials Physics. 2012;86(22). doi:10.1103/PhysRevB.86.224409","apa":"Bieri, S., Serbyn, M., Senthil, T., & Lee, P. (2012). Paired chiral spin liquid with a Fermi surface in S=1 model on the triangular lattice. Physical Review B - Condensed Matter and Materials Physics. American Physical Society. https://doi.org/10.1103/PhysRevB.86.224409","ieee":"S. Bieri, M. Serbyn, T. Senthil, and P. Lee, “Paired chiral spin liquid with a Fermi surface in S=1 model on the triangular lattice,” Physical Review B - Condensed Matter and Materials Physics, vol. 86, no. 22. American Physical Society, 2012.","ista":"Bieri S, Serbyn M, Senthil T, Lee P. 2012. Paired chiral spin liquid with a Fermi surface in S=1 model on the triangular lattice. Physical Review B - Condensed Matter and Materials Physics. 86(22)."},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1208.3231"}],"oa":1,"date_published":"2012-12-13T00:00:00Z","doi":"10.1103/PhysRevB.86.224409","type":"journal_article","extern":1,"abstract":[{"text":"Motivated by recent experiments on Ba3NiSb2O 9, we investigate possible quantum spin liquid ground states for spin S=1 Heisenberg models on the triangular lattice. We use variational Monte Carlo techniques to calculate the energies of microscopic spin liquid wave functions where spin is represented by three flavors of fermionic spinon operators. These energies are compared with the energies of various competing three-sublattice ordered states. Our approach shows that the antiferromagnetic Heisenberg model with biquadratic term and single-ion anisotropy does not have a low-temperature spin liquid phase. However, for an SU(3)-invariant model with sufficiently strong ring-exchange terms, we find a paired chiral quantum spin liquid with a Fermi surface of deconfined spinons that is stable against all types of ordering patterns we considered. We discuss the physics of this exotic spin liquid state in relation to the recent experiment and suggest new ways to test this scenario.","lang":"eng"}],"publist_id":"6431","issue":"22","publication_status":"published","status":"public","title":"Paired chiral spin liquid with a Fermi surface in S=1 model on the triangular lattice","publisher":"American Physical Society","intvolume":" 86","_id":"966","acknowledgement":"We thank Kuang-Ting Chen, Rebecca Flint, Dmitri Ivanov, Z.-X. Liu, Tai-Kai Ng, Lara Thompson, Tamás Tóth, and Fa Wang for helpful discussions. T.S. is supported by NSF DMR 1005434. P.A.L. is supported by NSF DMR 1104498. S.B. acknowledges support from the Swiss National Science Foundation (SNSF).","year":"2012","date_created":"2018-12-11T11:49:27Z","date_updated":"2021-01-12T08:22:18Z","volume":86,"author":[{"full_name":"Bieri, Samuel","first_name":"Samuel","last_name":"Bieri"},{"full_name":"Maksym Serbyn","last_name":"Serbyn","first_name":"Maksym","orcid":"0000-0002-2399-5827","id":"47809E7E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Senthil, Todadri S","last_name":"Senthil","first_name":"Todadri"},{"full_name":"Lee, Patrick","first_name":"Patrick","last_name":"Lee"}]},{"pubrep_id":"296","file":[{"creator":"system","content_type":"application/pdf","file_size":235820,"file_name":"IST-2014-296-v1+1_4_wasps_revised3.pdf","access_level":"open_access","date_created":"2018-12-12T10:17:47Z","date_updated":"2020-07-14T12:45:57Z","checksum":"c14ee4cb2a8ba9575bfd8a9bb7a883bb","file_id":"5304","relation":"main_file"},{"date_created":"2018-12-12T10:17:48Z","date_updated":"2020-07-14T12:45:57Z","checksum":"f00afc5b887c8222014b57375b8caece","file_id":"5305","relation":"main_file","creator":"system","content_type":"application/pdf","file_size":41975,"file_name":"IST-2014-296-v1+2_4_wasps_Supporting2.pdf","access_level":"open_access"}],"oa_version":"Submitted Version","_id":"2968","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","ddc":["570","579"],"status":"public","title":"A likelihood based comparison of population histories in a parasitoid guild","intvolume":" 21","abstract":[{"text":"Little is known about the stability of trophic relationships in complex natural communities over evolutionary timescales. Here, we use sequence data from 18 nuclear loci to reconstruct and compare the intraspecific histories of major Pleistocene refugial populations in the Middle East, the Balkans and Iberia in a guild of four Chalcid parasitoids (Cecidostiba fungosa, Cecidostiba semifascia, Hobbya stenonota and Mesopolobus amaenus) all attacking Cynipid oak galls. We develop a likelihood method to numerically estimate models of divergence between three populations from multilocus data. We investigate the power of this framework on simulated data, and-using triplet alignments of intronic loci-quantify the support for all possible divergence relationships between refugial populations in the four parasitoids. Although an East to West order of population divergence has highest support in all but one species, we cannot rule out alternative population tree topologies. Comparing the estimated times of population splits between species, we find that one species, M. amaenus, has a significantly older history than the rest of the guild and must have arrived in central Europe at least one glacial cycle prior to other guild members. This suggests that although all four species may share a common origin in the East, they expanded westwards into Europe at different times. © 2012 Blackwell Publishing Ltd.","lang":"eng"}],"issue":"18","type":"journal_article","date_published":"2012-09-01T00:00:00Z","publication":"Molecular Ecology","citation":{"ieee":"K. Lohse, N. H. Barton, G. Melika, and G. Stone, “A likelihood based comparison of population histories in a parasitoid guild,” Molecular Ecology, vol. 21, no. 18. Wiley-Blackwell, pp. 4605–4617, 2012.","apa":"Lohse, K., Barton, N. H., Melika, G., & Stone, G. (2012). A likelihood based comparison of population histories in a parasitoid guild. Molecular Ecology. Wiley-Blackwell. https://doi.org/10.1111/j.1365-294X.2012.05700.x","ista":"Lohse K, Barton NH, Melika G, Stone G. 2012. A likelihood based comparison of population histories in a parasitoid guild. Molecular Ecology. 21(18), 4605–4617.","ama":"Lohse K, Barton NH, Melika G, Stone G. A likelihood based comparison of population histories in a parasitoid guild. Molecular Ecology. 2012;21(18):4605-4617. doi:10.1111/j.1365-294X.2012.05700.x","chicago":"Lohse, Konrad, Nicholas H Barton, George Melika, and Graham Stone. “A Likelihood Based Comparison of Population Histories in a Parasitoid Guild.” Molecular Ecology. Wiley-Blackwell, 2012. https://doi.org/10.1111/j.1365-294X.2012.05700.x.","short":"K. Lohse, N.H. Barton, G. Melika, G. Stone, Molecular Ecology 21 (2012) 4605–4617.","mla":"Lohse, Konrad, et al. “A Likelihood Based Comparison of Population Histories in a Parasitoid Guild.” Molecular Ecology, vol. 21, no. 18, Wiley-Blackwell, 2012, pp. 4605–17, doi:10.1111/j.1365-294X.2012.05700.x."},"page":"4605 - 4617","day":"01","has_accepted_license":"1","scopus_import":1,"author":[{"last_name":"Lohse","first_name":"Konrad","full_name":"Lohse, Konrad"},{"full_name":"Barton, Nicholas H","first_name":"Nicholas H","last_name":"Barton","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8548-5240"},{"first_name":"George","last_name":"Melika","full_name":"Melika, George"},{"full_name":"Stone, Graham","last_name":"Stone","first_name":"Graham"}],"related_material":{"record":[{"status":"public","relation":"research_data","id":"13075"}]},"date_updated":"2023-05-30T13:07:47Z","date_created":"2018-12-11T12:00:36Z","volume":21,"year":"2012","acknowledgement":"This work was supported by funding from the UK Natural Environment Research Council to KL (NE/I020288/1) and GS (NE/H000038/1, NE/E014453/1, NER/B/504406/1, NER/B/S2003/00856) and a grant from the European Research Council (250152) to NB.\r\nWe thank Majide Tavakoli, Juli Pujade-Villar and Pablo-Fuentes Utrilla for contributing specimens. Mike Hickerson and three anonymous reviewers gave helpful comments on earlier versions of the manuscript. ","publication_status":"published","publisher":"Wiley-Blackwell","department":[{"_id":"NiBa"}],"file_date_updated":"2020-07-14T12:45:57Z","ec_funded":1,"publist_id":"3746","doi":"10.1111/j.1365-294X.2012.05700.x","language":[{"iso":"eng"}],"oa":1,"quality_controlled":"1","project":[{"call_identifier":"FP7","name":"Limits to selection in biology and in evolutionary computation","_id":"25B07788-B435-11E9-9278-68D0E5697425","grant_number":"250152"}],"month":"09"},{"doi":"10.5061/DRYAD.0G0FS","date_published":"2012-06-08T00:00:00Z","tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"oa":1,"citation":{"ista":"Lohse K, Barton NH, Stone G, Melika G. 2012. Data from: A likelihood-based comparison of population histories in a parasitoid guild, Dryad, 10.5061/DRYAD.0G0FS.","ieee":"K. Lohse, N. H. Barton, G. Stone, and G. Melika, “Data from: A likelihood-based comparison of population histories in a parasitoid guild.” Dryad, 2012.","apa":"Lohse, K., Barton, N. H., Stone, G., & Melika, G. (2012). Data from: A likelihood-based comparison of population histories in a parasitoid guild. Dryad. https://doi.org/10.5061/DRYAD.0G0FS","ama":"Lohse K, Barton NH, Stone G, Melika G. Data from: A likelihood-based comparison of population histories in a parasitoid guild. 2012. doi:10.5061/DRYAD.0G0FS","chicago":"Lohse, Konrad, Nicholas H Barton, Graham Stone, and George Melika. “Data from: A Likelihood-Based Comparison of Population Histories in a Parasitoid Guild.” Dryad, 2012. https://doi.org/10.5061/DRYAD.0G0FS.","mla":"Lohse, Konrad, et al. Data from: A Likelihood-Based Comparison of Population Histories in a Parasitoid Guild. Dryad, 2012, doi:10.5061/DRYAD.0G0FS.","short":"K. Lohse, N.H. Barton, G. Stone, G. Melika, (2012)."},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.5061/dryad.0g0fs"}],"article_processing_charge":"No","day":"08","month":"06","oa_version":"Published Version","date_updated":"2023-05-30T13:07:48Z","date_created":"2023-05-23T17:01:02Z","related_material":{"record":[{"id":"2968","status":"public","relation":"used_in_publication"}]},"author":[{"full_name":"Lohse, Konrad","last_name":"Lohse","first_name":"Konrad"},{"orcid":"0000-0002-8548-5240","id":"4880FE40-F248-11E8-B48F-1D18A9856A87","last_name":"Barton","first_name":"Nicholas H","full_name":"Barton, Nicholas H"},{"full_name":"Stone, Graham","first_name":"Graham","last_name":"Stone"},{"first_name":"George","last_name":"Melika","full_name":"Melika, George"}],"department":[{"_id":"NiBa"}],"publisher":"Dryad","status":"public","ddc":["570"],"title":"Data from: A likelihood-based comparison of population histories in a parasitoid guild","_id":"13075","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2012","license":"https://creativecommons.org/publicdomain/zero/1.0/","abstract":[{"text":"Little is known about the stability of trophic relationships in complex natural communities over evolutionary timescales. Here, we use sequence data from 18 nuclear loci to reconstruct and compare the intraspecific histories of major Pleistocene refugial populations in the Middle East, the Balkans and Iberia in a guild of four Chalcid parasitoids (Cecidostiba fungosa, C. semifascia, Hobbya stenonota and Mesopolobus amaenus) all attacking Cynipid oak galls. We develop a likelihood method to numerically estimate models of divergence between three populations from multilocus data. We investigate the power of this framework on simulated data, and - using triplet alignments of intronic loci - quantify the support for all possible divergence relationships between refugial populations in the four parasitoids. Although an East to West order of population divergence has highest support in all but one species, we cannot rule out alternative population tree topologies. Comparing the estimated times of population splits between species, we find that one species, M. amaenus, has a significantly older history than the rest of the guild and must have arrived in central Europe at least one glacial cycle prior to other guild members. This suggests that although all four species may share a common origin in the East, they expanded westwards into Europe at different times.","lang":"eng"}],"type":"research_data_reference"},{"publication_identifier":{"issn":["0002-7863"],"eissn":["1520-5126"]},"month":"11","doi":"10.1021/ja309633v","language":[{"iso":"eng"}],"external_id":{"pmid":["23181449"]},"quality_controlled":"1","extern":"1","author":[{"full_name":"Chovnik, Olga","last_name":"Chovnik","first_name":"Olga"},{"full_name":"Balgley, Renata","first_name":"Renata","last_name":"Balgley"},{"last_name":"Goldman","first_name":"Joel R.","full_name":"Goldman, Joel R."},{"first_name":"Rafal","last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","full_name":"Klajn, Rafal"}],"volume":134,"date_updated":"2023-08-08T07:51:10Z","date_created":"2023-08-01T09:47:42Z","pmid":1,"year":"2012","publisher":"American Chemical Society","publication_status":"published","article_processing_charge":"No","day":"26","scopus_import":"1","keyword":["Colloid and Surface Chemistry","Biochemistry","General Chemistry","Catalysis"],"date_published":"2012-11-26T00:00:00Z","citation":{"chicago":"Chovnik, Olga, Renata Balgley, Joel R. Goldman, and Rafal Klajn. “Dynamically Self-Assembling Carriers Enable Guiding of Diamagnetic Particles by Weak Magnets.” Journal of the American Chemical Society. American Chemical Society, 2012. https://doi.org/10.1021/ja309633v.","mla":"Chovnik, Olga, et al. “Dynamically Self-Assembling Carriers Enable Guiding of Diamagnetic Particles by Weak Magnets.” Journal of the American Chemical Society, vol. 134, no. 48, American Chemical Society, 2012, pp. 19564–67, doi:10.1021/ja309633v.","short":"O. Chovnik, R. Balgley, J.R. Goldman, R. Klajn, Journal of the American Chemical Society 134 (2012) 19564–19567.","ista":"Chovnik O, Balgley R, Goldman JR, Klajn R. 2012. Dynamically self-assembling carriers enable guiding of diamagnetic particles by weak magnets. Journal of the American Chemical Society. 134(48), 19564–19567.","apa":"Chovnik, O., Balgley, R., Goldman, J. R., & Klajn, R. (2012). Dynamically self-assembling carriers enable guiding of diamagnetic particles by weak magnets. Journal of the American Chemical Society. American Chemical Society. https://doi.org/10.1021/ja309633v","ieee":"O. Chovnik, R. Balgley, J. R. Goldman, and R. Klajn, “Dynamically self-assembling carriers enable guiding of diamagnetic particles by weak magnets,” Journal of the American Chemical Society, vol. 134, no. 48. American Chemical Society, pp. 19564–19567, 2012.","ama":"Chovnik O, Balgley R, Goldman JR, Klajn R. Dynamically self-assembling carriers enable guiding of diamagnetic particles by weak magnets. Journal of the American Chemical Society. 2012;134(48):19564-19567. doi:10.1021/ja309633v"},"publication":"Journal of the American Chemical Society","page":"19564-19567","article_type":"original","issue":"48","abstract":[{"lang":"eng","text":"We show that diamagnetic particles can be remotely manipulated by a magnet by the reversible adsorption of dual-responsive, light-switchable/superparamagnetic nanoparticles down to their surface. Adsorption occurs upon exposure to UV light, and can be reversed thermally or by ambient light. The dynamic self-assembly of thin films of the dual-responsive nanoparticles induces attractive interactions between diamagnetic particles. We demonstrate that catalytic amounts of the dual-responsive nanoparticles are sufficient to magnetically guide and deliver the diamagnetic particles to desired locations, where they can then be released by disassembling the dynamic layers of superparamagnetic nanoparticles with visible light."}],"type":"journal_article","oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13407","intvolume":" 134","title":"Dynamically self-assembling carriers enable guiding of diamagnetic particles by weak magnets","status":"public"},{"extern":"1","pmid":1,"year":"2012","publisher":"Wiley","publication_status":"published","author":[{"last_name":"Ridelman","first_name":"Yonatan","full_name":"Ridelman, Yonatan"},{"last_name":"Singh","first_name":"Gurvinder","full_name":"Singh, Gurvinder"},{"last_name":"Popovitz-Biro","first_name":"Ronit","full_name":"Popovitz-Biro, Ronit"},{"full_name":"Wolf, Sharon G.","first_name":"Sharon G.","last_name":"Wolf"},{"last_name":"Das","first_name":"Sanjib","full_name":"Das, Sanjib"},{"last_name":"Klajn","first_name":"Rafal","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","full_name":"Klajn, Rafal"}],"volume":8,"date_updated":"2023-08-08T07:55:10Z","date_created":"2023-08-01T09:47:55Z","publication_identifier":{"eissn":["1613-6829"],"issn":["1613-6810"]},"month":"03","external_id":{"pmid":["22392681"]},"quality_controlled":"1","doi":"10.1002/smll.201101882","language":[{"iso":"eng"}],"type":"journal_article","issue":"5","abstract":[{"lang":"eng","text":"Well-defined metallic nanobowls can be prepared by extending the concept of a protecting group to colloidal synthesis. Magnetic nanoparticles are employed as “protecting groups” during the galvanic replacement of silver with gold. The replacement reaction is accompanied by spontantous dissociation of the protecting groups, leaving behind metallic nanobowls."}],"_id":"13408","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 8","status":"public","title":"Metallic nanobowls by galvanic replacement reaction on heterodimeric nanoparticles","oa_version":"None","scopus_import":"1","keyword":["Biomaterials","Biotechnology","General Materials Science","General Chemistry"],"article_processing_charge":"No","day":"12","citation":{"short":"Y. Ridelman, G. Singh, R. Popovitz-Biro, S.G. Wolf, S. Das, R. Klajn, Small 8 (2012) 654–660.","mla":"Ridelman, Yonatan, et al. “Metallic Nanobowls by Galvanic Replacement Reaction on Heterodimeric Nanoparticles.” Small, vol. 8, no. 5, Wiley, 2012, pp. 654–60, doi:10.1002/smll.201101882.","chicago":"Ridelman, Yonatan, Gurvinder Singh, Ronit Popovitz-Biro, Sharon G. Wolf, Sanjib Das, and Rafal Klajn. “Metallic Nanobowls by Galvanic Replacement Reaction on Heterodimeric Nanoparticles.” Small. Wiley, 2012. https://doi.org/10.1002/smll.201101882.","ama":"Ridelman Y, Singh G, Popovitz-Biro R, Wolf SG, Das S, Klajn R. Metallic nanobowls by galvanic replacement reaction on heterodimeric nanoparticles. Small. 2012;8(5):654-660. doi:10.1002/smll.201101882","apa":"Ridelman, Y., Singh, G., Popovitz-Biro, R., Wolf, S. G., Das, S., & Klajn, R. (2012). Metallic nanobowls by galvanic replacement reaction on heterodimeric nanoparticles. Small. Wiley. https://doi.org/10.1002/smll.201101882","ieee":"Y. Ridelman, G. Singh, R. Popovitz-Biro, S. G. Wolf, S. Das, and R. Klajn, “Metallic nanobowls by galvanic replacement reaction on heterodimeric nanoparticles,” Small, vol. 8, no. 5. Wiley, pp. 654–660, 2012.","ista":"Ridelman Y, Singh G, Popovitz-Biro R, Wolf SG, Das S, Klajn R. 2012. Metallic nanobowls by galvanic replacement reaction on heterodimeric nanoparticles. Small. 8(5), 654–660."},"publication":"Small","page":"654-660","article_type":"original","date_published":"2012-03-12T00:00:00Z"},{"date_published":"2012-10-15T00:00:00Z","page":"167-182","publication":"Automated Technology for Verification and Analysis","citation":{"ama":"Bouajjani A, Dragoi C, Enea C, Sighireanu M. Accurate invariant checking for programs manipulating lists and arrays with infinite data. In: Automated Technology for Verification and Analysis. Vol 7561. LNCS. Berlin, Heidelberg: Springer; 2012:167-182. doi:10.1007/978-3-642-33386-6_14","ista":"Bouajjani A, Dragoi C, Enea C, Sighireanu M. 2012. Accurate invariant checking for programs manipulating lists and arrays with infinite data. Automated Technology for Verification and Analysis. ATVA: Automated Technology for Verification and AnalysisLNCS, LNCS, vol. 7561, 167–182.","apa":"Bouajjani, A., Dragoi, C., Enea, C., & Sighireanu, M. (2012). Accurate invariant checking for programs manipulating lists and arrays with infinite data. In Automated Technology for Verification and Analysis (Vol. 7561, pp. 167–182). Berlin, Heidelberg: Springer. https://doi.org/10.1007/978-3-642-33386-6_14","ieee":"A. Bouajjani, C. Dragoi, C. Enea, and M. Sighireanu, “Accurate invariant checking for programs manipulating lists and arrays with infinite data,” in Automated Technology for Verification and Analysis, Thiruvananthapuram, India, 2012, vol. 7561, pp. 167–182.","mla":"Bouajjani, Ahmed, et al. “Accurate Invariant Checking for Programs Manipulating Lists and Arrays with Infinite Data.” Automated Technology for Verification and Analysis, vol. 7561, Springer, 2012, pp. 167–82, doi:10.1007/978-3-642-33386-6_14.","short":"A. Bouajjani, C. Dragoi, C. Enea, M. Sighireanu, in:, Automated Technology for Verification and Analysis, Springer, Berlin, Heidelberg, 2012, pp. 167–182.","chicago":"Bouajjani, Ahmed, Cezara Dragoi, Constantin Enea, and Mihaela Sighireanu. “Accurate Invariant Checking for Programs Manipulating Lists and Arrays with Infinite Data.” In Automated Technology for Verification and Analysis, 7561:167–82. LNCS. Berlin, Heidelberg: Springer, 2012. https://doi.org/10.1007/978-3-642-33386-6_14."},"day":"15","article_processing_charge":"No","series_title":"LNCS","scopus_import":"1","oa_version":"None","title":"Accurate invariant checking for programs manipulating lists and arrays with infinite data","status":"public","intvolume":" 7561","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","_id":"10903","abstract":[{"lang":"eng","text":"We propose a logic-based framework for automated reasoning about sequential programs manipulating singly-linked lists and arrays with unbounded data. We introduce the logic SLAD, which allows combining shape constraints, written in a fragment of Separation Logic, with data and size constraints. We address the problem of checking the entailment between SLAD formulas, which is crucial in performing pre-post condition reasoning. Although this problem is undecidable in general for SLAD, we propose a sound and powerful procedure that is able to solve this problem for a large class of formulas, beyond the capabilities of existing techniques and tools. We prove that this procedure is complete, i.e., it is actually a decision procedure for this problem, for an important fragment of SLAD including known decidable logics. We implemented this procedure and shown its preciseness and its efficiency on a significant benchmark of formulas."}],"alternative_title":["LNCS"],"type":"conference","language":[{"iso":"eng"}],"conference":{"name":"ATVA: Automated Technology for Verification and Analysis","location":"Thiruvananthapuram, India","start_date":"2012-10-03","end_date":"2012-10-06"},"doi":"10.1007/978-3-642-33386-6_14","quality_controlled":"1","month":"10","publication_identifier":{"isbn":["9783642333859"],"eissn":["1611-3349"],"issn":["0302-9743"],"eisbn":["9783642333866"]},"date_updated":"2023-09-05T14:07:24Z","date_created":"2022-03-21T07:58:39Z","volume":7561,"author":[{"full_name":"Bouajjani, Ahmed","last_name":"Bouajjani","first_name":"Ahmed"},{"id":"2B2B5ED0-F248-11E8-B48F-1D18A9856A87","first_name":"Cezara","last_name":"Dragoi","full_name":"Dragoi, Cezara"},{"full_name":"Enea, Constantin","first_name":"Constantin","last_name":"Enea"},{"last_name":"Sighireanu","first_name":"Mihaela","full_name":"Sighireanu, Mihaela"}],"publication_status":"published","department":[{"_id":"ToHe"}],"publisher":"Springer","acknowledgement":"This work has been partially supported by the French ANR project Veridyc","year":"2012","place":"Berlin, Heidelberg"},{"ec_funded":1,"department":[{"_id":"KrCh"}],"publisher":"Springer","publication_status":"published","year":"2012","acknowledgement":"Supported by the Austrian Science Fund (FWF): P23499-N23, the Austrian Science Fund (FWF): S11407-N23 (RiSE), an ERC Start Grant (279307: Graph Games), and a Microsoft Faculty Fellows Award","volume":7501,"date_created":"2022-03-21T08:01:45Z","date_updated":"2023-09-05T14:09:30Z","related_material":{"record":[{"id":"535","status":"public","relation":"later_version"}]},"author":[{"full_name":"Chatterjee, Krishnendu","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-4561-241X","first_name":"Krishnendu","last_name":"Chatterjee"},{"full_name":"Henzinger, Monika H","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","orcid":"0000-0002-5008-6530","first_name":"Monika H","last_name":"Henzinger"},{"first_name":"Sebastian","last_name":"Krinninger","full_name":"Krinninger, Sebastian"},{"first_name":"Danupon","last_name":"Nanongkai","full_name":"Nanongkai, Danupon"}],"publication_identifier":{"isbn":["9783642330896"],"eissn":["1611-3349"],"issn":["0302-9743"],"eisbn":["9783642330902"]},"month":"10","project":[{"name":"Game Theory","call_identifier":"FWF","grant_number":"S11407","_id":"25863FF4-B435-11E9-9278-68D0E5697425"},{"call_identifier":"FP7","name":"Quantitative Graph Games: Theory and Applications","_id":"2581B60A-B435-11E9-9278-68D0E5697425","grant_number":"279307"},{"_id":"2587B514-B435-11E9-9278-68D0E5697425","name":"Microsoft Research Faculty Fellowship"}],"quality_controlled":"1","external_id":{"arxiv":["1604.08234"]},"oa":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1604.08234"}],"language":[{"iso":"eng"}],"doi":"10.1007/978-3-642-33090-2_27","conference":{"start_date":"2012-09-10","location":"Ljubljana, Slovenia","end_date":"2012-09-12","name":"ESA: European Symposium on Algorithms"},"alternative_title":["LNCS"],"type":"conference","abstract":[{"text":"Energy games belong to a class of turn-based two-player infinite-duration games played on a weighted directed graph. It is one of the rare and intriguing combinatorial problems that lie in NP ∩ co−NP, but are not known to be in P. While the existence of polynomial-time algorithms has been a major open problem for decades, there is no algorithm that solves any non-trivial subclass in polynomial time.\r\nIn this paper, we give several results based on the weight structures of the graph. First, we identify a notion of penalty and present a polynomial-time algorithm when the penalty is large. Our algorithm is the first polynomial-time algorithm on a large class of weighted graphs. It includes several counter examples that show that many previous algorithms, such as value iteration and random facet algorithms, require at least sub-exponential time. Our main technique is developing the first non-trivial approximation algorithm and showing how to convert it to an exact algorithm. Moreover, we show that in a practical case in verification where weights are clustered around a constant number of values, the energy game problem can be solved in polynomial time. We also show that the problem is still as hard as in general when the clique-width is bounded or the graph is strongly ergodic, suggesting that restricting graph structures need not help.","lang":"eng"}],"intvolume":" 7501","status":"public","title":"Polynomial-time algorithms for energy games with special weight structures","_id":"10905","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","oa_version":"Preprint","scopus_import":"1","article_processing_charge":"No","day":"01","page":"301-312","citation":{"ama":"Chatterjee K, Henzinger MH, Krinninger S, Nanongkai D. Polynomial-time algorithms for energy games with special weight structures. In: Algorithms – ESA 2012. Vol 7501. Springer; 2012:301-312. doi:10.1007/978-3-642-33090-2_27","ieee":"K. Chatterjee, M. H. Henzinger, S. Krinninger, and D. Nanongkai, “Polynomial-time algorithms for energy games with special weight structures,” in Algorithms – ESA 2012, Ljubljana, Slovenia, 2012, vol. 7501, pp. 301–312.","apa":"Chatterjee, K., Henzinger, M. H., Krinninger, S., & Nanongkai, D. (2012). Polynomial-time algorithms for energy games with special weight structures. In Algorithms – ESA 2012 (Vol. 7501, pp. 301–312). Ljubljana, Slovenia: Springer. https://doi.org/10.1007/978-3-642-33090-2_27","ista":"Chatterjee K, Henzinger MH, Krinninger S, Nanongkai D. 2012. Polynomial-time algorithms for energy games with special weight structures. Algorithms – ESA 2012. ESA: European Symposium on Algorithms, LNCS, vol. 7501, 301–312.","short":"K. Chatterjee, M.H. Henzinger, S. Krinninger, D. Nanongkai, in:, Algorithms – ESA 2012, Springer, 2012, pp. 301–312.","mla":"Chatterjee, Krishnendu, et al. “Polynomial-Time Algorithms for Energy Games with Special Weight Structures.” Algorithms – ESA 2012, vol. 7501, Springer, 2012, pp. 301–12, doi:10.1007/978-3-642-33090-2_27.","chicago":"Chatterjee, Krishnendu, Monika H Henzinger, Sebastian Krinninger, and Danupon Nanongkai. “Polynomial-Time Algorithms for Energy Games with Special Weight Structures.” In Algorithms – ESA 2012, 7501:301–12. Springer, 2012. https://doi.org/10.1007/978-3-642-33090-2_27."},"publication":"Algorithms – ESA 2012","date_published":"2012-10-01T00:00:00Z"},{"abstract":[{"text":"HSF(C) is a tool that automates verification of safety and liveness properties for C programs. This paper describes the verification approach taken by HSF(C) and provides instructions on how to install and use the tool.","lang":"eng"}],"type":"conference","alternative_title":["LNCS"],"oa_version":"Published Version","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","_id":"10906","intvolume":" 7214","status":"public","title":"HSF(C): A software verifier based on Horn clauses","article_processing_charge":"No","day":"01","scopus_import":"1","series_title":"LNCS","date_published":"2012-04-01T00:00:00Z","citation":{"mla":"Grebenshchikov, Sergey, et al. “HSF(C): A Software Verifier Based on Horn Clauses.” Tools and Algorithms for the Construction and Analysis of Systems, edited by Cormac Flanagan and Barbara König, vol. 7214, Springer, 2012, pp. 549–51, doi:10.1007/978-3-642-28756-5_46.","short":"S. Grebenshchikov, A. Gupta, N.P. Lopes, C. Popeea, A. Rybalchenko, in:, C. Flanagan, B. König (Eds.), Tools and Algorithms for the Construction and Analysis of Systems, Springer, Berlin, Heidelberg, 2012, pp. 549–551.","chicago":"Grebenshchikov, Sergey, Ashutosh Gupta, Nuno P. Lopes, Corneliu Popeea, and Andrey Rybalchenko. “HSF(C): A Software Verifier Based on Horn Clauses.” In Tools and Algorithms for the Construction and Analysis of Systems, edited by Cormac Flanagan and Barbara König, 7214:549–51. LNCS. Berlin, Heidelberg: Springer, 2012. https://doi.org/10.1007/978-3-642-28756-5_46.","ama":"Grebenshchikov S, Gupta A, Lopes NP, Popeea C, Rybalchenko A. HSF(C): A software verifier based on Horn clauses. In: Flanagan C, König B, eds. Tools and Algorithms for the Construction and Analysis of Systems. Vol 7214. LNCS. Berlin, Heidelberg: Springer; 2012:549-551. doi:10.1007/978-3-642-28756-5_46","ista":"Grebenshchikov S, Gupta A, Lopes NP, Popeea C, Rybalchenko A. 2012. HSF(C): A software verifier based on Horn clauses. Tools and Algorithms for the Construction and Analysis of Systems. TACAS: Tools and Algorithms for the Construction and Analysis of SystemsLNCS, LNCS, vol. 7214, 549–551.","ieee":"S. Grebenshchikov, A. Gupta, N. P. Lopes, C. Popeea, and A. Rybalchenko, “HSF(C): A software verifier based on Horn clauses,” in Tools and Algorithms for the Construction and Analysis of Systems, Tallinn, Estonia, 2012, vol. 7214, pp. 549–551.","apa":"Grebenshchikov, S., Gupta, A., Lopes, N. P., Popeea, C., & Rybalchenko, A. (2012). HSF(C): A software verifier based on Horn clauses. In C. Flanagan & B. König (Eds.), Tools and Algorithms for the Construction and Analysis of Systems (Vol. 7214, pp. 549–551). Berlin, Heidelberg: Springer. https://doi.org/10.1007/978-3-642-28756-5_46"},"publication":"Tools and Algorithms for the Construction and Analysis of Systems","page":"549-551","place":"Berlin, Heidelberg","author":[{"full_name":"Grebenshchikov, Sergey","last_name":"Grebenshchikov","first_name":"Sergey"},{"id":"335E5684-F248-11E8-B48F-1D18A9856A87","last_name":"Gupta","first_name":"Ashutosh","full_name":"Gupta, Ashutosh"},{"last_name":"Lopes","first_name":"Nuno P.","full_name":"Lopes, Nuno P."},{"full_name":"Popeea, Corneliu","last_name":"Popeea","first_name":"Corneliu"},{"full_name":"Rybalchenko, Andrey","last_name":"Rybalchenko","first_name":"Andrey"}],"volume":7214,"date_updated":"2023-09-05T14:09:54Z","date_created":"2022-03-21T08:03:30Z","year":"2012","publisher":"Springer","editor":[{"first_name":"Cormac","last_name":"Flanagan","full_name":"Flanagan, Cormac"},{"last_name":"König","first_name":"Barbara","full_name":"König, Barbara"}],"department":[{"_id":"ToHe"}],"publication_status":"published","publication_identifier":{"eissn":["1611-3349"],"isbn":["9783642287558"],"issn":["0302-9743"],"eisbn":["9783642287565"]},"month":"04","doi":"10.1007/978-3-642-28756-5_46","conference":{"name":"TACAS: Tools and Algorithms for the Construction and Analysis of Systems","start_date":"2012-03-24","location":"Tallinn, Estonia","end_date":"2012-04-01"},"language":[{"iso":"eng"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1007/978-3-642-28756-5_46"}],"oa":1,"quality_controlled":"1"},{"type":"book_chapter","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","_id":"5745","title":"Improved Single Pass Algorithms for Resolution Proof Reduction","status":"public","ddc":["005"],"intvolume":" 7561","pubrep_id":"180","oa_version":"None","file":[{"file_size":465502,"content_type":"application/pdf","creator":"dernst","access_level":"open_access","file_name":"2012_ATVA_Gupta.pdf","checksum":"68415837a315de3cc4d120f6019d752c","date_created":"2018-12-18T13:07:35Z","date_updated":"2020-07-14T12:47:10Z","relation":"main_file","file_id":"5746"}],"series_title":"LNCS","article_processing_charge":"No","has_accepted_license":"1","publication":"Automated Technology for Verification and Analysis","citation":{"ama":"Gupta A. Improved Single Pass Algorithms for Resolution Proof Reduction. In: Automated Technology for Verification and Analysis. Vol 7561. LNCS. Berlin, Heidelberg: Springer Berlin Heidelberg; 2012:107-121. doi:10.1007/978-3-642-33386-6_10","ista":"Gupta A. 2012.Improved Single Pass Algorithms for Resolution Proof Reduction. In: Automated Technology for Verification and Analysis. vol. 7561, 107–121.","ieee":"A. Gupta, “Improved Single Pass Algorithms for Resolution Proof Reduction,” in Automated Technology for Verification and Analysis, vol. 7561, Berlin, Heidelberg: Springer Berlin Heidelberg, 2012, pp. 107–121.","apa":"Gupta, A. (2012). Improved Single Pass Algorithms for Resolution Proof Reduction. In Automated Technology for Verification and Analysis (Vol. 7561, pp. 107–121). Berlin, Heidelberg: Springer Berlin Heidelberg. https://doi.org/10.1007/978-3-642-33386-6_10","mla":"Gupta, Ashutosh. “Improved Single Pass Algorithms for Resolution Proof Reduction.” Automated Technology for Verification and Analysis, vol. 7561, Springer Berlin Heidelberg, 2012, pp. 107–21, doi:10.1007/978-3-642-33386-6_10.","short":"A. Gupta, in:, Automated Technology for Verification and Analysis, Springer Berlin Heidelberg, Berlin, Heidelberg, 2012, pp. 107–121.","chicago":"Gupta, Ashutosh. “Improved Single Pass Algorithms for Resolution Proof Reduction.” In Automated Technology for Verification and Analysis, 7561:107–21. LNCS. Berlin, Heidelberg: Springer Berlin Heidelberg, 2012. https://doi.org/10.1007/978-3-642-33386-6_10."},"page":"107-121","date_published":"2012-01-01T00:00:00Z","place":"Berlin, Heidelberg","file_date_updated":"2020-07-14T12:47:10Z","ec_funded":1,"year":"2012","publication_status":"published","publisher":"Springer Berlin Heidelberg","department":[{"_id":"ToHe"}],"author":[{"full_name":"Gupta, Ashutosh","last_name":"Gupta","first_name":"Ashutosh"}],"date_updated":"2023-09-05T14:15:29Z","date_created":"2018-12-18T13:01:46Z","volume":7561,"publication_identifier":{"isbn":["9783642333859","9783642333866"],"eissn":["1611-3349"],"issn":["0302-9743"]},"oa":1,"quality_controlled":"1","project":[{"_id":"25EE3708-B435-11E9-9278-68D0E5697425","grant_number":"267989","name":"Quantitative Reactive Modeling","call_identifier":"FP7"}],"conference":{"end_date":"2012-10-06","start_date":"2012-10-03","location":"Thiruvananthapuram, Kerala, India","name":"ATVA 2012"},"doi":"10.1007/978-3-642-33386-6_10","language":[{"iso":"eng"}]},{"publisher":"Springer","department":[{"_id":"ToHe"}],"publication_status":"published","acknowledgement":"This research was supported in part by the European Research Council (ERC) Advanced Investigator Grant QUAREM and by the Austrian Science Fund (FWF) project S11402-N23.","year":"2012","volume":7148,"date_created":"2018-12-11T12:02:16Z","date_updated":"2023-09-07T11:36:36Z","related_material":{"record":[{"status":"public","relation":"dissertation_contains","id":"1405"}]},"author":[{"full_name":"Zufferey, Damien","orcid":"0000-0002-3197-8736","id":"4397AC76-F248-11E8-B48F-1D18A9856A87","last_name":"Zufferey","first_name":"Damien"},{"id":"447BFB88-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas","last_name":"Wies","full_name":"Wies, Thomas"},{"first_name":"Thomas A","last_name":"Henzinger","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","orcid":"0000−0002−2985−7724","full_name":"Henzinger, Thomas A"}],"publist_id":"3406","ec_funded":1,"file_date_updated":"2020-07-14T12:46:05Z","project":[{"_id":"25EE3708-B435-11E9-9278-68D0E5697425","grant_number":"267989","call_identifier":"FP7","name":"Quantitative Reactive Modeling"},{"call_identifier":"FWF","name":"Rigorous Systems Engineering","_id":"25832EC2-B435-11E9-9278-68D0E5697425","grant_number":"S 11407_N23"}],"quality_controlled":"1","oa":1,"language":[{"iso":"eng"}],"doi":"10.1007/978-3-642-27940-9_29","conference":{"name":"VMCAI: Verification, Model Checking and Abstract Interpretation","start_date":"2012-01-22","location":"Philadelphia, PA, USA","end_date":"2012-01-24"},"month":"01","intvolume":" 7148","status":"public","title":"Ideal abstractions for well structured transition systems","ddc":["000","005"],"_id":"3251","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","file":[{"date_created":"2018-12-12T10:09:35Z","date_updated":"2020-07-14T12:46:05Z","checksum":"f2f0d55efa32309ad1fe65a5fcaad90c","file_id":"4759","relation":"main_file","creator":"system","file_size":217104,"content_type":"application/pdf","file_name":"IST-2012-100-v1+1_Ideal_abstractions_for_well-structured_transition_systems.pdf","access_level":"open_access"}],"oa_version":"Submitted Version","pubrep_id":"100","alternative_title":["LNCS"],"type":"conference","abstract":[{"lang":"eng","text":"Many infinite state systems can be seen as well-structured transition systems (WSTS), i.e., systems equipped with a well-quasi-ordering on states that is also a simulation relation. WSTS are an attractive target for formal analysis because there exist generic algorithms that decide interesting verification problems for this class. Among the most popular algorithms are acceleration-based forward analyses for computing the covering set. Termination of these algorithms can only be guaranteed for flattable WSTS. Yet, many WSTS of practical interest are not flattable and the question whether any given WSTS is flattable is itself undecidable. We therefore propose an analysis that computes the covering set and captures the essence of acceleration-based algorithms, but sacrifices precision for guaranteed termination. Our analysis is an abstract interpretation whose abstract domain builds on the ideal completion of the well-quasi-ordered state space, and a widening operator that mimics acceleration and controls the loss of precision of the analysis. We present instances of our framework for various classes of WSTS. Our experience with a prototype implementation indicates that, despite the inherent precision loss, our analysis often computes the precise covering set of the analyzed system."}],"page":"445 - 460","citation":{"short":"D. Zufferey, T. Wies, T.A. Henzinger, in:, Springer, 2012, pp. 445–460.","mla":"Zufferey, Damien, et al. Ideal Abstractions for Well Structured Transition Systems. Vol. 7148, Springer, 2012, pp. 445–60, doi:10.1007/978-3-642-27940-9_29.","chicago":"Zufferey, Damien, Thomas Wies, and Thomas A Henzinger. “Ideal Abstractions for Well Structured Transition Systems,” 7148:445–60. Springer, 2012. https://doi.org/10.1007/978-3-642-27940-9_29.","ama":"Zufferey D, Wies T, Henzinger TA. Ideal abstractions for well structured transition systems. In: Vol 7148. Springer; 2012:445-460. doi:10.1007/978-3-642-27940-9_29","ieee":"D. Zufferey, T. Wies, and T. A. Henzinger, “Ideal abstractions for well structured transition systems,” presented at the VMCAI: Verification, Model Checking and Abstract Interpretation, Philadelphia, PA, USA, 2012, vol. 7148, pp. 445–460.","apa":"Zufferey, D., Wies, T., & Henzinger, T. A. (2012). Ideal abstractions for well structured transition systems (Vol. 7148, pp. 445–460). Presented at the VMCAI: Verification, Model Checking and Abstract Interpretation, Philadelphia, PA, USA: Springer. https://doi.org/10.1007/978-3-642-27940-9_29","ista":"Zufferey D, Wies T, Henzinger TA. 2012. Ideal abstractions for well structured transition systems. VMCAI: Verification, Model Checking and Abstract Interpretation, LNCS, vol. 7148, 445–460."},"date_published":"2012-01-01T00:00:00Z","has_accepted_license":"1","day":"01"},{"publication_status":"published","publisher":"Nature Publishing Group","department":[{"_id":"KrCh"}],"year":"2012","pmid":1,"date_updated":"2023-09-07T11:40:43Z","date_created":"2018-12-11T12:01:43Z","volume":486,"author":[{"full_name":"Diaz Jr, Luis","last_name":"Diaz Jr","first_name":"Luis"},{"last_name":"Williams","first_name":"Richard","full_name":"Williams, Richard"},{"full_name":"Wu, Jian","last_name":"Wu","first_name":"Jian"},{"last_name":"Kinde","first_name":"Isaac","full_name":"Kinde, Isaac"},{"full_name":"Hecht, Joel","last_name":"Hecht","first_name":"Joel"},{"full_name":"Berlin, Jordan","last_name":"Berlin","first_name":"Jordan"},{"full_name":"Allen, Benjamin","first_name":"Benjamin","last_name":"Allen"},{"full_name":"Božić, Ivana","first_name":"Ivana","last_name":"Božić"},{"full_name":"Reiter, Johannes","orcid":"0000-0002-0170-7353","id":"4A918E98-F248-11E8-B48F-1D18A9856A87","last_name":"Reiter","first_name":"Johannes"},{"full_name":"Nowak, Martin","first_name":"Martin","last_name":"Nowak"},{"first_name":"Kenneth","last_name":"Kinzler","full_name":"Kinzler, Kenneth"},{"last_name":"Oliner","first_name":"Kelly","full_name":"Oliner, Kelly"},{"last_name":"Vogelstein","first_name":"Bert","full_name":"Vogelstein, Bert"}],"related_material":{"record":[{"id":"1400","relation":"dissertation_contains","status":"public"}]},"publist_id":"3537","ec_funded":1,"quality_controlled":"1","project":[{"_id":"2581B60A-B435-11E9-9278-68D0E5697425","grant_number":"279307","call_identifier":"FP7","name":"Quantitative Graph Games: Theory and Applications"},{"call_identifier":"FWF","name":"Rigorous Systems Engineering","_id":"25832EC2-B435-11E9-9278-68D0E5697425","grant_number":"S 11407_N23"}],"main_file_link":[{"url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3436069/","open_access":"1"}],"external_id":{"pmid":["22722843"]},"oa":1,"language":[{"iso":"eng"}],"doi":"10.1038/nature11219","month":"06","title":"The molecular evolution of acquired resistance to targeted EGFR blockade in colorectal cancers","status":"public","intvolume":" 486","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","_id":"3157","oa_version":"Submitted Version","type":"journal_article","abstract":[{"text":"Colorectal tumours that are wild type for KRAS are often sensitive to EGFR blockade, but almost always develop resistance within several months of initiating therapy. The mechanisms underlying this acquired resistance to anti-EGFR antibodies are largely unknown. This situation is in marked contrast to that of small-molecule targeted agents, such as inhibitors of ABL, EGFR, BRAF and MEK, in which mutations in the genes encoding the protein targets render the tumours resistant to the effects of the drugs. The simplest hypothesis to account for the development of resistance to EGFR blockade is that rare cells with KRAS mutations pre-exist at low levels in tumours with ostensibly wild-type KRAS genes. Although this hypothesis would seem readily testable, there is no evidence in pre-clinical models to support it, nor is there data from patients. To test this hypothesis, we determined whether mutant KRAS DNA could be detected in the circulation of 28 patients receiving monotherapy with panitumumab, a therapeutic anti-EGFR antibody. We found that 9 out of 24 (38%) patients whose tumours were initially KRAS wild type developed detectable mutations in KRAS in their sera, three of which developed multiple different KRAS mutations. The appearance of these mutations was very consistent, generally occurring between 5 and 6months following treatment. Mathematical modelling indicated that the mutations were present in expanded subclones before the initiation of panitumumab treatment. These results suggest that the emergence of KRAS mutations is a mediator of acquired resistance to EGFR blockade and that these mutations can be detected in a non-invasive manner. They explain why solid tumours develop resistance to targeted therapies in a highly reproducible fashion.","lang":"eng"}],"issue":"7404","page":"537 - 540","publication":"Nature","citation":{"ama":"Diaz Jr L, Williams R, Wu J, et al. The molecular evolution of acquired resistance to targeted EGFR blockade in colorectal cancers. Nature. 2012;486(7404):537-540. doi:10.1038/nature11219","apa":"Diaz Jr, L., Williams, R., Wu, J., Kinde, I., Hecht, J., Berlin, J., … Vogelstein, B. (2012). The molecular evolution of acquired resistance to targeted EGFR blockade in colorectal cancers. Nature. Nature Publishing Group. https://doi.org/10.1038/nature11219","ieee":"L. Diaz Jr et al., “The molecular evolution of acquired resistance to targeted EGFR blockade in colorectal cancers,” Nature, vol. 486, no. 7404. Nature Publishing Group, pp. 537–540, 2012.","ista":"Diaz Jr L, Williams R, Wu J, Kinde I, Hecht J, Berlin J, Allen B, Božić I, Reiter J, Nowak M, Kinzler K, Oliner K, Vogelstein B. 2012. The molecular evolution of acquired resistance to targeted EGFR blockade in colorectal cancers. Nature. 486(7404), 537–540.","short":"L. Diaz Jr, R. Williams, J. Wu, I. Kinde, J. Hecht, J. Berlin, B. Allen, I. Božić, J. Reiter, M. Nowak, K. Kinzler, K. Oliner, B. Vogelstein, Nature 486 (2012) 537–540.","mla":"Diaz Jr, Luis, et al. “The Molecular Evolution of Acquired Resistance to Targeted EGFR Blockade in Colorectal Cancers.” Nature, vol. 486, no. 7404, Nature Publishing Group, 2012, pp. 537–40, doi:10.1038/nature11219.","chicago":"Diaz Jr, Luis, Richard Williams, Jian Wu, Isaac Kinde, Joel Hecht, Jordan Berlin, Benjamin Allen, et al. “The Molecular Evolution of Acquired Resistance to Targeted EGFR Blockade in Colorectal Cancers.” Nature. Nature Publishing Group, 2012. https://doi.org/10.1038/nature11219."},"date_published":"2012-06-28T00:00:00Z","scopus_import":1,"day":"28"},{"publist_id":"3388","ec_funded":1,"pmid":1,"year":"2012","publisher":"Academic Press","department":[{"_id":"KrCh"}],"publication_status":"published","related_material":{"record":[{"id":"1400","status":"public","relation":"dissertation_contains"}]},"author":[{"full_name":"Chatterjee, Krishnendu","orcid":"0000-0002-4561-241X","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee","first_name":"Krishnendu"},{"full_name":"Reiter, Johannes","last_name":"Reiter","first_name":"Johannes","orcid":"0000-0002-0170-7353","id":"4A918E98-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Nowak","first_name":"Martin","full_name":"Nowak, Martin"}],"volume":81,"date_updated":"2023-09-07T11:40:43Z","date_created":"2018-12-11T12:02:19Z","month":"02","main_file_link":[{"url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3279759/ ","open_access":"1"}],"external_id":{"pmid":["22120126"]},"oa":1,"project":[{"grant_number":"279307","_id":"2581B60A-B435-11E9-9278-68D0E5697425","call_identifier":"FP7","name":"Quantitative Graph Games: Theory and Applications"},{"grant_number":"S 11407_N23","_id":"25832EC2-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Rigorous Systems Engineering"},{"call_identifier":"FWF","name":"Modern Graph Algorithmic Techniques in Formal Verification","grant_number":"P 23499-N23","_id":"2584A770-B435-11E9-9278-68D0E5697425"},{"name":"Microsoft Research Faculty Fellowship","_id":"2587B514-B435-11E9-9278-68D0E5697425"}],"quality_controlled":"1","doi":"10.1016/j.tpb.2011.11.003","language":[{"iso":"eng"}],"type":"journal_article","issue":"1","abstract":[{"text":"Many scenarios in the living world, where individual organisms compete for winning positions (or resources), have properties of auctions. Here we study the evolution of bids in biological auctions. For each auction, n individuals are drawn at random from a population of size N. Each individual makes a bid which entails a cost. The winner obtains a benefit of a certain value. Costs and benefits are translated into reproductive success (fitness). Therefore, successful bidding strategies spread in the population. We compare two types of auctions. In “biological all-pay auctions”, the costs are the bid for every participating individual. In “biological second price all-pay auctions”, the cost for everyone other than the winner is the bid, but the cost for the winner is the second highest bid. Second price all-pay auctions are generalizations of the “war of attrition” introduced by Maynard Smith. We study evolutionary dynamics in both types of auctions. We calculate pairwise invasion plots and evolutionarily stable distributions over the continuous strategy space. We find that the average bid in second price all-pay auctions is higher than in all-pay auctions, but the average cost for the winner is similar in both auctions. In both cases, the average bid is a declining function of the number of participants, n. The more individuals participate in an auction the smaller is the chance of winning, and thus expensive bids must be avoided.\r\n","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"3260","intvolume":" 81","title":"Evolutionary dynamics of biological auctions","status":"public","oa_version":"Submitted Version","scopus_import":1,"day":"01","citation":{"chicago":"Chatterjee, Krishnendu, Johannes Reiter, and Martin Nowak. “Evolutionary Dynamics of Biological Auctions.” Theoretical Population Biology. Academic Press, 2012. https://doi.org/10.1016/j.tpb.2011.11.003.","mla":"Chatterjee, Krishnendu, et al. “Evolutionary Dynamics of Biological Auctions.” Theoretical Population Biology, vol. 81, no. 1, Academic Press, 2012, pp. 69–80, doi:10.1016/j.tpb.2011.11.003.","short":"K. Chatterjee, J. Reiter, M. Nowak, Theoretical Population Biology 81 (2012) 69–80.","ista":"Chatterjee K, Reiter J, Nowak M. 2012. Evolutionary dynamics of biological auctions. Theoretical Population Biology. 81(1), 69–80.","apa":"Chatterjee, K., Reiter, J., & Nowak, M. (2012). Evolutionary dynamics of biological auctions. Theoretical Population Biology. Academic Press. https://doi.org/10.1016/j.tpb.2011.11.003","ieee":"K. Chatterjee, J. Reiter, and M. Nowak, “Evolutionary dynamics of biological auctions,” Theoretical Population Biology, vol. 81, no. 1. Academic Press, pp. 69–80, 2012.","ama":"Chatterjee K, Reiter J, Nowak M. Evolutionary dynamics of biological auctions. Theoretical Population Biology. 2012;81(1):69-80. doi:10.1016/j.tpb.2011.11.003"},"publication":"Theoretical Population Biology","page":"69 - 80","date_published":"2012-02-01T00:00:00Z"},{"month":"04","publication_identifier":{"issn":["1546-1726"]},"language":[{"iso":"eng"}],"doi":"10.1038/nn.3060","quality_controlled":"1","project":[{"grant_number":"SFB-TR3-TP10B","_id":"25BDE9A4-B435-11E9-9278-68D0E5697425","name":"Glutamaterge synaptische Übertragung und Plastizität in hippocampalen Mikroschaltkreisen"}],"oa":1,"main_file_link":[{"url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3617474/","open_access":"1"}],"external_id":{"pmid":["22388958"]},"publist_id":"3390","date_created":"2018-12-11T12:02:18Z","date_updated":"2023-09-07T11:43:52Z","volume":15,"author":[{"first_name":"Sooyun","last_name":"Kim","id":"394AB1C8-F248-11E8-B48F-1D18A9856A87","full_name":"Kim, Sooyun"},{"full_name":"Guzmán, José","orcid":"0000-0003-2209-5242","id":"30CC5506-F248-11E8-B48F-1D18A9856A87","last_name":"Guzmán","first_name":"José"},{"full_name":"Hu, Hua","id":"4AC0145C-F248-11E8-B48F-1D18A9856A87","first_name":"Hua","last_name":"Hu"},{"last_name":"Jonas","first_name":"Peter M","orcid":"0000-0001-5001-4804","id":"353C1B58-F248-11E8-B48F-1D18A9856A87","full_name":"Jonas, Peter M"}],"related_material":{"record":[{"id":"2964","status":"public","relation":"dissertation_contains"}]},"publication_status":"published","publisher":"Nature Publishing Group","department":[{"_id":"PeJo"}],"year":"2012","acknowledgement":"This work was supported by the Deutsche Forschungsgemeinschaft (TR 3/B10) and the European Union (European Research Council Advanced grant to P.J.).","pmid":1,"day":"01","article_processing_charge":"No","scopus_import":"1","date_published":"2012-04-01T00:00:00Z","article_type":"original","page":"600 - 606","publication":"Nature Neuroscience","citation":{"apa":"Kim, S., Guzmán, J., Hu, H., & Jonas, P. M. (2012). Active dendrites support efficient initiation of dendritic spikes in hippocampal CA3 pyramidal neurons. Nature Neuroscience. Nature Publishing Group. https://doi.org/10.1038/nn.3060","ieee":"S. Kim, J. Guzmán, H. Hu, and P. M. Jonas, “Active dendrites support efficient initiation of dendritic spikes in hippocampal CA3 pyramidal neurons,” Nature Neuroscience, vol. 15, no. 4. Nature Publishing Group, pp. 600–606, 2012.","ista":"Kim S, Guzmán J, Hu H, Jonas PM. 2012. Active dendrites support efficient initiation of dendritic spikes in hippocampal CA3 pyramidal neurons. Nature Neuroscience. 15(4), 600–606.","ama":"Kim S, Guzmán J, Hu H, Jonas PM. Active dendrites support efficient initiation of dendritic spikes in hippocampal CA3 pyramidal neurons. Nature Neuroscience. 2012;15(4):600-606. doi:10.1038/nn.3060","chicago":"Kim, Sooyun, José Guzmán, Hua Hu, and Peter M Jonas. “Active Dendrites Support Efficient Initiation of Dendritic Spikes in Hippocampal CA3 Pyramidal Neurons.” Nature Neuroscience. Nature Publishing Group, 2012. https://doi.org/10.1038/nn.3060.","short":"S. Kim, J. Guzmán, H. Hu, P.M. Jonas, Nature Neuroscience 15 (2012) 600–606.","mla":"Kim, Sooyun, et al. “Active Dendrites Support Efficient Initiation of Dendritic Spikes in Hippocampal CA3 Pyramidal Neurons.” Nature Neuroscience, vol. 15, no. 4, Nature Publishing Group, 2012, pp. 600–06, doi:10.1038/nn.3060."},"abstract":[{"text":"CA3 pyramidal neurons are important for memory formation and pattern completion in the hippocampal network. It is generally thought that proximal synapses from the mossy fibers activate these neurons most efficiently, whereas distal inputs from the perforant path have a weaker modulatory influence. We used confocally targeted patch-clamp recording from dendrites and axons to map the activation of rat CA3 pyramidal neurons at the subcellular level. Our results reveal two distinct dendritic domains. In the proximal domain, action potentials initiated in the axon backpropagate actively with large amplitude and fast time course. In the distal domain, Na+ channel–mediated dendritic spikes are efficiently initiated by waveforms mimicking synaptic events. CA3 pyramidal neuron dendrites showed a high Na+-to-K+ conductance density ratio, providing ideal conditions for active backpropagation and dendritic spike initiation. Dendritic spikes may enhance the computational power of CA3 pyramidal neurons in the hippocampal network.","lang":"eng"}],"issue":"4","type":"journal_article","oa_version":"Published Version","title":"Active dendrites support efficient initiation of dendritic spikes in hippocampal CA3 pyramidal neurons","status":"public","intvolume":" 15","_id":"3258","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9"},{"page":"65","citation":{"chicago":"Kim, Sooyun. “Active Properties of Hippocampal CA3 Pyramidal Neuron Dendrites.” Institute of Science and Technology Austria, 2012.","mla":"Kim, Sooyun. Active Properties of Hippocampal CA3 Pyramidal Neuron Dendrites. Institute of Science and Technology Austria, 2012.","short":"S. Kim, Active Properties of Hippocampal CA3 Pyramidal Neuron Dendrites, Institute of Science and Technology Austria, 2012.","ista":"Kim S. 2012. Active properties of hippocampal CA3 pyramidal neuron dendrites. Institute of Science and Technology Austria.","ieee":"S. Kim, “Active properties of hippocampal CA3 pyramidal neuron dendrites,” Institute of Science and Technology Austria, 2012.","apa":"Kim, S. (2012). Active properties of hippocampal CA3 pyramidal neuron dendrites. Institute of Science and Technology Austria.","ama":"Kim S. Active properties of hippocampal CA3 pyramidal neuron dendrites. 2012."},"language":[{"iso":"eng"}],"degree_awarded":"PhD","supervisor":[{"id":"353C1B58-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5001-4804","first_name":"Peter M","last_name":"Jonas","full_name":"Jonas, Peter M"}],"date_published":"2012-06-01T00:00:00Z","article_processing_charge":"No","publication_identifier":{"issn":["2663-337X"]},"day":"01","month":"06","publisher":"Institute of Science and Technology Austria","department":[{"_id":"PeJo"},{"_id":"GradSch"}],"title":"Active properties of hippocampal CA3 pyramidal neuron dendrites","publication_status":"published","status":"public","_id":"2964","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","year":"2012","oa_version":"None","date_created":"2018-12-11T12:00:35Z","date_updated":"2023-09-07T11:43:51Z","related_material":{"record":[{"id":"3258","status":"public","relation":"part_of_dissertation"}]},"author":[{"full_name":"Kim, Sooyun","first_name":"Sooyun","last_name":"Kim","id":"394AB1C8-F248-11E8-B48F-1D18A9856A87"}],"alternative_title":["ISTA Thesis"],"type":"dissertation","publist_id":"3755","abstract":[{"lang":"eng","text":"CA3 pyramidal neurons are important for memory formation and pattern completion in the hippocampal network. These neurons receive multiple excitatory inputs from numerous sources. Therefore, the rules of spatiotemporal integration of multiple synaptic inputs and propagation of action potentials are important to understand how CA3 neurons contribute to higher brain functions at cellular level. By using confocally targeted patch-clamp recording techniques, we investigated the biophysical properties of rat CA3 pyramidal neuron dendrites. We found two distinct dendritic domains critical for action potential initiation and propagation: In the proximal domain, action potentials initiated in the axon backpropagate actively with large amplitude and fast time course. In the distal domain, Na+-channel mediated dendritic spikes are efficiently evoked by local dendritic depolarization or waveforms mimicking synaptic events. These findings can be explained by a high Na+-to-K+ conductance density ratio of CA3 pyramidal neuron dendrites. The results challenge the prevailing view that proximal mossy fiber inputs activate CA3 pyramidal neurons more efficiently than distal perforant inputs by showing that the distal synapses trigger a different form of activity represented by dendritic spikes. The high probability of dendritic spike initiation in the distal area may enhance the computational power of CA3 pyramidal neurons in the hippocampal network. "}]},{"type":"journal_article","issue":"1","publist_id":"3423","abstract":[{"lang":"eng","text":"Visualizing and analyzing shape changes at various scales, ranging from single molecules to whole organisms, are essential for understanding complex morphogenetic processes, such as early embryonic development. Embryo morphogenesis relies on the interplay between different tissues, the properties of which are again determined by the interaction between their constituent cells. Cell interactions, on the other hand, are controlled by various molecules, such as signaling and adhesion molecules, which in order to exert their functions need to be spatiotemporally organized within and between the interacting cells. In this review, we will focus on the role of cell adhesion functioning at different scales to organize cell, tissue and embryo morphogenesis. We will specifically ask how the subcellular distribution of adhesion molecules controls the formation of cell-cell contacts, how cell-cell contacts determine tissue shape, and how tissue interactions regulate embryo morphogenesis."}],"publisher":"Elsevier","department":[{"_id":"CaHe"}],"intvolume":" 24","status":"public","publication_status":"published","title":"Cell adhesion in embryo morphogenesis","_id":"3246","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2012","acknowledgement":"This review comes from a themed issue on Cell structure and dynamics Edited by Jason Swedlow and Gaudenz Danuser","volume":24,"oa_version":"None","date_updated":"2023-09-07T12:05:08Z","date_created":"2018-12-11T12:02:14Z","related_material":{"record":[{"relation":"dissertation_contains","status":"public","id":"961"}]},"author":[{"full_name":"Barone, Vanessa","orcid":"0000-0003-2676-3367","id":"419EECCC-F248-11E8-B48F-1D18A9856A87","last_name":"Barone","first_name":"Vanessa"},{"full_name":"Heisenberg, Carl-Philipp J","id":"39427864-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0912-4566","first_name":"Carl-Philipp J","last_name":"Heisenberg"}],"scopus_import":1,"day":"01","month":"02","page":"148 - 153","quality_controlled":"1","citation":{"ama":"Barone V, Heisenberg C-PJ. Cell adhesion in embryo morphogenesis. Current Opinion in Cell Biology. 2012;24(1):148-153. doi:10.1016/j.ceb.2011.11.006","ista":"Barone V, Heisenberg C-PJ. 2012. Cell adhesion in embryo morphogenesis. Current Opinion in Cell Biology. 24(1), 148–153.","ieee":"V. Barone and C.-P. J. Heisenberg, “Cell adhesion in embryo morphogenesis,” Current Opinion in Cell Biology, vol. 24, no. 1. Elsevier, pp. 148–153, 2012.","apa":"Barone, V., & Heisenberg, C.-P. J. (2012). Cell adhesion in embryo morphogenesis. Current Opinion in Cell Biology. Elsevier. https://doi.org/10.1016/j.ceb.2011.11.006","mla":"Barone, Vanessa, and Carl-Philipp J. Heisenberg. “Cell Adhesion in Embryo Morphogenesis.” Current Opinion in Cell Biology, vol. 24, no. 1, Elsevier, 2012, pp. 148–53, doi:10.1016/j.ceb.2011.11.006.","short":"V. Barone, C.-P.J. Heisenberg, Current Opinion in Cell Biology 24 (2012) 148–153.","chicago":"Barone, Vanessa, and Carl-Philipp J Heisenberg. “Cell Adhesion in Embryo Morphogenesis.” Current Opinion in Cell Biology. Elsevier, 2012. https://doi.org/10.1016/j.ceb.2011.11.006."},"publication":"Current Opinion in Cell Biology","language":[{"iso":"eng"}],"date_published":"2012-02-01T00:00:00Z","doi":"10.1016/j.ceb.2011.11.006"},{"pmid":1,"year":"2012","acknowledgement":"We thank S. Harmer for assistance with the analysis of histone modifications, the BioOptics team at the Vienna Biocenter Campus for sorting sperm and vegetative cell nuclei, K. Slotkin for the LAT52p-amiRNA=GFP plasmid, and G. Drews for the DD45p-GFP transgenic line. This work was partially funded by an NIH grant (GM69415) to R.L.F., NSF grants (MCB-0918821 and IOS-1025890) to R.L.F. and D.Z., a Young Investigator Grant from the Arnold and Mabel Beckman Foundation to D.Z., an Austrian Science Fund (FWF) grant P21389-B03 to H.T., a Ruth L. Kirschstein NIH Predoctoral Fellowship (GM093633) to C.A.I., a Fulbright Scholarship to J.A.R., a fellowship from the Jane Coffin Childs Memorial Fund to A.Z., and a Robert and Colleen Haas Scholarship to D.R. Sequencing data are deposited in GEO (GSE38935).","department":[{"_id":"XiFe"}],"publisher":"American Association for the Advancement of Science","publication_status":"published","author":[{"last_name":"Ibarra","first_name":"Christian A.","full_name":"Ibarra, Christian A."},{"first_name":"Xiaoqi","last_name":"Feng","id":"e0164712-22ee-11ed-b12a-d80fcdf35958","orcid":"0000-0002-4008-1234","full_name":"Feng, Xiaoqi"},{"last_name":"Schoft","first_name":"Vera K.","full_name":"Schoft, Vera K."},{"last_name":"Hsieh","first_name":"Tzung-Fu","full_name":"Hsieh, Tzung-Fu"},{"first_name":"Rie","last_name":"Uzawa","full_name":"Uzawa, Rie"},{"full_name":"Rodrigues, Jessica A.","first_name":"Jessica A.","last_name":"Rodrigues"},{"full_name":"Zemach, Assaf","last_name":"Zemach","first_name":"Assaf"},{"last_name":"Chumak","first_name":"Nina","full_name":"Chumak, Nina"},{"first_name":"Adriana","last_name":"Machlicova","full_name":"Machlicova, Adriana"},{"full_name":"Nishimura, Toshiro","last_name":"Nishimura","first_name":"Toshiro"},{"first_name":"Denisse","last_name":"Rojas","full_name":"Rojas, Denisse"},{"first_name":"Robert L.","last_name":"Fischer","full_name":"Fischer, Robert L."},{"full_name":"Tamaru, Hisashi","last_name":"Tamaru","first_name":"Hisashi"},{"first_name":"Daniel","last_name":"Zilberman","full_name":"Zilberman, Daniel"}],"volume":337,"date_created":"2023-01-16T09:21:24Z","date_updated":"2023-10-16T09:27:26Z","publication_identifier":{"eissn":["1095-9203"],"issn":["0036-8075"]},"month":"09","external_id":{"pmid":["22984074"]},"oa":1,"main_file_link":[{"url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4034762/","open_access":"1"}],"quality_controlled":"1","doi":"10.1126/science.1224839","language":[{"iso":"eng"}],"type":"journal_article","issue":"6100","abstract":[{"text":"The Arabidopsis thaliana central cell, the companion cell of the egg, undergoes DNA demethylation before fertilization, but the targeting preferences, mechanism, and biological significance of this process remain unclear. Here, we show that active DNA demethylation mediated by the DEMETER DNA glycosylase accounts for all of the demethylation in the central cell and preferentially targets small, AT-rich, and nucleosome-depleted euchromatic transposable elements. The vegetative cell, the companion cell of sperm, also undergoes DEMETER-dependent demethylation of similar sequences, and lack of DEMETER in vegetative cells causes reduced small RNA–directed DNA methylation of transposons in sperm. Our results demonstrate that demethylation in companion cells reinforces transposon methylation in plant gametes and likely contributes to stable silencing of transposable elements across generations.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12198","intvolume":" 337","status":"public","title":"Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes","oa_version":"Published Version","scopus_import":"1","keyword":["Multidisciplinary"],"article_processing_charge":"No","day":"14","citation":{"ista":"Ibarra CA, Feng X, Schoft VK, Hsieh T-F, Uzawa R, Rodrigues JA, Zemach A, Chumak N, Machlicova A, Nishimura T, Rojas D, Fischer RL, Tamaru H, Zilberman D. 2012. Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science. 337(6100), 1360–1364.","apa":"Ibarra, C. A., Feng, X., Schoft, V. K., Hsieh, T.-F., Uzawa, R., Rodrigues, J. A., … Zilberman, D. (2012). Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1224839","ieee":"C. A. Ibarra et al., “Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes,” Science, vol. 337, no. 6100. American Association for the Advancement of Science, pp. 1360–1364, 2012.","ama":"Ibarra CA, Feng X, Schoft VK, et al. Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science. 2012;337(6100):1360-1364. doi:10.1126/science.1224839","chicago":"Ibarra, Christian A., Xiaoqi Feng, Vera K. Schoft, Tzung-Fu Hsieh, Rie Uzawa, Jessica A. Rodrigues, Assaf Zemach, et al. “Active DNA Demethylation in Plant Companion Cells Reinforces Transposon Methylation in Gametes.” Science. American Association for the Advancement of Science, 2012. https://doi.org/10.1126/science.1224839.","mla":"Ibarra, Christian A., et al. “Active DNA Demethylation in Plant Companion Cells Reinforces Transposon Methylation in Gametes.” Science, vol. 337, no. 6100, American Association for the Advancement of Science, 2012, pp. 1360–64, doi:10.1126/science.1224839.","short":"C.A. Ibarra, X. Feng, V.K. Schoft, T.-F. Hsieh, R. Uzawa, J.A. Rodrigues, A. Zemach, N. Chumak, A. Machlicova, T. Nishimura, D. Rojas, R.L. Fischer, H. Tamaru, D. Zilberman, Science 337 (2012) 1360–1364."},"publication":"Science","page":"1360-1364","article_type":"original","date_published":"2012-09-14T00:00:00Z"},{"type":"journal_article","issue":"1","abstract":[{"lang":"eng","text":"First we note that the best polynomial approximation to vertical bar x vertical bar on the set, which consists of an interval on the positive half-axis and a point on the negative half-axis, can be given by means of the classical Chebyshev polynomials. Then we explore the cases when a solution of the related problem on two intervals can be given in elementary functions."}],"intvolume":" 8","title":"Elementary solutions of the Bernstein problem on two intervals","status":"public","_id":"6588","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","scopus_import":"1","article_processing_charge":"No","day":"01","page":"63-78","article_type":"original","citation":{"apa":"Pausinger, F. (2012). Elementary solutions of the Bernstein problem on two intervals. Journal of Mathematical Physics, Analysis, Geometry. B. Verkin Institute for Low Temperature Physics and Engineering.","ieee":"F. Pausinger, “Elementary solutions of the Bernstein problem on two intervals,” Journal of Mathematical Physics, Analysis, Geometry, vol. 8, no. 1. B. Verkin Institute for Low Temperature Physics and Engineering, pp. 63–78, 2012.","ista":"Pausinger F. 2012. Elementary solutions of the Bernstein problem on two intervals. Journal of Mathematical Physics, Analysis, Geometry. 8(1), 63–78.","ama":"Pausinger F. Elementary solutions of the Bernstein problem on two intervals. Journal of Mathematical Physics, Analysis, Geometry. 2012;8(1):63-78.","chicago":"Pausinger, Florian. “Elementary Solutions of the Bernstein Problem on Two Intervals.” Journal of Mathematical Physics, Analysis, Geometry. B. Verkin Institute for Low Temperature Physics and Engineering, 2012.","short":"F. Pausinger, Journal of Mathematical Physics, Analysis, Geometry 8 (2012) 63–78.","mla":"Pausinger, Florian. “Elementary Solutions of the Bernstein Problem on Two Intervals.” Journal of Mathematical Physics, Analysis, Geometry, vol. 8, no. 1, B. Verkin Institute for Low Temperature Physics and Engineering, 2012, pp. 63–78."},"publication":"Journal of Mathematical Physics, Analysis, Geometry","date_published":"2012-01-01T00:00:00Z","department":[{"_id":"HeEd"}],"publisher":"B. Verkin Institute for Low Temperature Physics and Engineering","publication_status":"published","acknowledgement":"This work is supported by the Austrian Science Fund (FWF), Project P22025-N18.\r\n","year":"2012","volume":8,"date_updated":"2023-10-16T09:41:31Z","date_created":"2019-06-27T08:16:56Z","author":[{"full_name":"Pausinger, Florian","orcid":"0000-0002-8379-3768","id":"2A77D7A2-F248-11E8-B48F-1D18A9856A87","last_name":"Pausinger","first_name":"Florian"}],"publication_identifier":{"issn":["1812-9471"]},"month":"01","isi":1,"quality_controlled":"1","main_file_link":[{"url":"http://mi.mathnet.ru/eng/jmag525","open_access":"1"}],"oa":1,"external_id":{"isi":["000301173600004"]},"language":[{"iso":"eng"}]},{"publist_id":"3576","file_date_updated":"2020-07-14T12:46:00Z","publisher":"Wiley","department":[{"_id":"ChWo"}],"publication_status":"published","year":"2012","acknowledgement":"This work was funded by NSF grant IIS-1017014 and CCF- 0917093.","volume":31,"date_updated":"2023-10-16T09:54:40Z","date_created":"2018-12-11T12:01:31Z","author":[{"full_name":"Yu, Jihun","last_name":"Yu","first_name":"Jihun"},{"id":"3C61F1D2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6646-5546","first_name":"Christopher J","last_name":"Wojtan","full_name":"Wojtan, Christopher J"},{"full_name":"Turk, Greg","first_name":"Greg","last_name":"Turk"},{"last_name":"Yap","first_name":"Chee","full_name":"Yap, Chee"}],"publication_identifier":{"issn":["0167-7055"],"eissn":["1467-8659"]},"month":"05","quality_controlled":"1","oa":1,"language":[{"iso":"eng"}],"doi":"10.1111/j.1467-8659.2012.03062.x","conference":{"end_date":"2012-05-18","location":"Cagliari, Sardinia, Italy","start_date":"2012-05-13","name":"EUROGRAPHICS: Conference on European Association for Computer Graphics"},"alternative_title":["Eurographics"],"type":"conference","issue":"2","abstract":[{"lang":"eng","text":"We introduce the idea of using an explicit triangle mesh to track the air/fluid interface in a smoothed particle hydrodynamics (SPH) simulator. Once an initial surface mesh is created, this mesh is carried forward in time using nearby particle velocities to advect the mesh vertices. The mesh connectivity remains mostly unchanged across time-steps; it is only modified locally for topology change events or for the improvement of triangle quality. In order to ensure that the surface mesh does not diverge from the underlying particle simulation, we periodically project the mesh surface onto an implicit surface defined by the physics simulation. The mesh surface gives us several advantages over previous SPH surface tracking techniques. We demonstrate a new method for surface tension calculations that clearly outperforms the state of the art in SPH surface tension for computer graphics. We also demonstrate a method for tracking detailed surface information (like colors) that is less susceptible to numerical diffusion than competing techniques. Finally, our temporally-coherent surface mesh allows us to simulate high-resolution surface wave dynamics without being limited by the particle resolution of the SPH simulation."}],"intvolume":" 31","status":"public","ddc":["000"],"title":"Explicit mesh surfaces for particle based fluids","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"3123","file":[{"access_level":"open_access","file_name":"IST-2016-601-v1+1_meshSPH.pdf","creator":"system","file_size":5740527,"content_type":"application/pdf","file_id":"5092","relation":"main_file","checksum":"acb325dd1e31859bedd30e013f61d0b9","date_updated":"2020-07-14T12:46:00Z","date_created":"2018-12-12T10:14:39Z"}],"oa_version":"Submitted Version","pubrep_id":"601","scopus_import":"1","has_accepted_license":"1","article_processing_charge":"No","day":"01","page":"815 - 824","citation":{"ama":"Yu J, Wojtan C, Turk G, Yap C. Explicit mesh surfaces for particle based fluids. In: Computer Graphics Forum. Vol 31. Wiley; 2012:815-824. doi:10.1111/j.1467-8659.2012.03062.x","ieee":"J. Yu, C. Wojtan, G. Turk, and C. Yap, “Explicit mesh surfaces for particle based fluids,” in Computer Graphics Forum, Cagliari, Sardinia, Italy, 2012, vol. 31, no. 2, pp. 815–824.","apa":"Yu, J., Wojtan, C., Turk, G., & Yap, C. (2012). Explicit mesh surfaces for particle based fluids. In Computer Graphics Forum (Vol. 31, pp. 815–824). Cagliari, Sardinia, Italy: Wiley. https://doi.org/10.1111/j.1467-8659.2012.03062.x","ista":"Yu J, Wojtan C, Turk G, Yap C. 2012. Explicit mesh surfaces for particle based fluids. Computer Graphics Forum. EUROGRAPHICS: Conference on European Association for Computer Graphics, Eurographics, vol. 31, 815–824.","short":"J. Yu, C. Wojtan, G. Turk, C. Yap, in:, Computer Graphics Forum, Wiley, 2012, pp. 815–824.","mla":"Yu, Jihun, et al. “Explicit Mesh Surfaces for Particle Based Fluids.” Computer Graphics Forum, vol. 31, no. 2, Wiley, 2012, pp. 815–24, doi:10.1111/j.1467-8659.2012.03062.x.","chicago":"Yu, Jihun, Chris Wojtan, Greg Turk, and Chee Yap. “Explicit Mesh Surfaces for Particle Based Fluids.” In Computer Graphics Forum, 31:815–24. Wiley, 2012. https://doi.org/10.1111/j.1467-8659.2012.03062.x."},"publication":"Computer Graphics Forum","date_published":"2012-05-01T00:00:00Z"},{"date_published":"2012-04-15T00:00:00Z","page":"284","article_type":"letter_note","citation":{"ama":"Danowski P. Die Zeit des Abwartens ist vorbei! BuB - Forum Bibliothek und Information. 2012;64(4):284.","apa":"Danowski, P. (2012). Die Zeit des Abwartens ist vorbei! BuB - Forum Bibliothek und Information. Fachzeitschrift des BIB – Berufsverband Information Bibliothek.","ieee":"P. Danowski, “Die Zeit des Abwartens ist vorbei!,” BuB - Forum Bibliothek und Information, vol. 64, no. 4. Fachzeitschrift des BIB – Berufsverband Information Bibliothek, p. 284, 2012.","ista":"Danowski P. 2012. Die Zeit des Abwartens ist vorbei! BuB - Forum Bibliothek und Information. 64(4), 284.","short":"P. Danowski, BuB - Forum Bibliothek und Information 64 (2012) 284.","mla":"Danowski, Patrick. “Die Zeit des Abwartens ist vorbei!” BuB - Forum Bibliothek und Information, vol. 64, no. 4, Fachzeitschrift des BIB – Berufsverband Information Bibliothek, 2012, p. 284.","chicago":"Danowski, Patrick. “Die Zeit des Abwartens ist vorbei!” BuB - Forum Bibliothek und Information. Fachzeitschrift des BIB – Berufsverband Information Bibliothek, 2012."},"publication":"BuB - Forum Bibliothek und Information","article_processing_charge":"No","day":"15","oa_version":"Published Version","popular_science":"1","intvolume":" 64","title":"Die Zeit des Abwartens ist vorbei!","status":"public","_id":"3244","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","issue":"4","abstract":[{"text":"Bibliothekare haben die Aufgabe, sich mit neuen Medienformen auseinanderzusetzen.\r\n","lang":"eng"}],"type":"journal_article","language":[{"iso":"ger"}],"oa":1,"main_file_link":[{"url":"https://www.b-u-b.de/fileadmin/archiv/imports/pdf_files/2012/bub_2012_04_284.pdf","open_access":"1"}],"publication_identifier":{"issn":["1869 -1137"]},"month":"04","volume":64,"date_created":"2018-12-11T12:02:13Z","date_updated":"2023-10-16T10:19:14Z","author":[{"id":"2EBD1598-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6026-4409","first_name":"Patrick","last_name":"Danowski","full_name":"Danowski, Patrick"}],"publisher":"Fachzeitschrift des BIB – Berufsverband Information Bibliothek","department":[{"_id":"E-Lib"}],"publication_status":"published","year":"2012","publist_id":"3432"},{"publication":"Büchereiperspektiven","citation":{"mla":"Danowski, Patrick. “Zwischen Technologie und Information.” Büchereiperspektiven, vol. 2012, no. 1, Büchereiverband Österreichs, 2012, p. 11.","short":"P. Danowski, Büchereiperspektiven 2012 (2012) 11.","chicago":"Danowski, Patrick. “Zwischen Technologie und Information.” Büchereiperspektiven. Büchereiverband Österreichs, 2012.","ama":"Danowski P. Zwischen Technologie und Information. Büchereiperspektiven. 2012;2012(1):11.","ista":"Danowski P. 2012. Zwischen Technologie und Information. Büchereiperspektiven. 2012(1), 11.","apa":"Danowski, P. (2012). Zwischen Technologie und Information. Büchereiperspektiven. Büchereiverband Österreichs.","ieee":"P. Danowski, “Zwischen Technologie und Information,” Büchereiperspektiven, vol. 2012, no. 1. Büchereiverband Österreichs, p. 11, 2012."},"article_type":"letter_note","page":"11","date_published":"2012-03-01T00:00:00Z","day":"01","article_processing_charge":"No","_id":"3243","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","title":"Zwischen Technologie und Information","intvolume":" 2012","popular_science":"1","oa_version":"Published Version","type":"journal_article","abstract":[{"lang":"eng","text":"Wie wandelt sich das Berufsbild in Wissenschaftlichen Bibliotheken? Patrick Danowski gibt seine Einschätzung ab. "}],"issue":"1","main_file_link":[{"url":"https://www.bvoe.at/sites/default/files/2022-07/BP_1_12.pdf","open_access":"1"}],"oa":1,"language":[{"iso":"ger"}],"month":"03","publication_identifier":{"issn":["1607-7172"]},"year":"2012","publication_status":"published","department":[{"_id":"E-Lib"}],"publisher":"Büchereiverband Österreichs","author":[{"orcid":"0000-0002-6026-4409","id":"2EBD1598-F248-11E8-B48F-1D18A9856A87","last_name":"Danowski","first_name":"Patrick","full_name":"Danowski, Patrick"}],"date_created":"2018-12-11T12:02:13Z","date_updated":"2023-10-16T10:40:18Z","volume":2012,"publist_id":"3433"},{"citation":{"ista":"Kroemer O, Lampert C, Peters J. 2012. Multi-modal learning for dynamic tactile sensing","apa":"Kroemer, O., Lampert, C., & Peters, J. (2012). Multi-modal learning for dynamic tactile sensing. Deutsches Zentrum für Luft und Raumfahrt.","ieee":"O. Kroemer, C. Lampert, and J. Peters, “Multi-modal learning for dynamic tactile sensing,” 2012.","ama":"Kroemer O, Lampert C, Peters J. Multi-modal learning for dynamic tactile sensing. In: Deutsches Zentrum für Luft und Raumfahrt; 2012.","chicago":"Kroemer, Oliver, Christoph Lampert, and Jan Peters. “Multi-Modal Learning for Dynamic Tactile Sensing.” Deutsches Zentrum für Luft und Raumfahrt, 2012.","mla":"Kroemer, Oliver, et al. Multi-Modal Learning for Dynamic Tactile Sensing. Deutsches Zentrum für Luft und Raumfahrt, 2012.","short":"O. Kroemer, C. Lampert, J. Peters, in:, Deutsches Zentrum für Luft und Raumfahrt, 2012."},"quality_controlled":"1","date_published":"2012-10-11T00:00:00Z","language":[{"iso":"eng"}],"article_processing_charge":"No","month":"10","day":"11","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"2915","year":"2012","acknowledgement":"The project receives funding from the European Community’s Seventh Framework Programme under grant agreement\r\nno. ICT- 248273 GeRT.","publisher":"Deutsches Zentrum für Luft und Raumfahrt","department":[{"_id":"ChLa"}],"status":"public","publication_status":"published","title":"Multi-modal learning for dynamic tactile sensing","author":[{"full_name":"Kroemer, Oliver","first_name":"Oliver","last_name":"Kroemer"},{"last_name":"Lampert","first_name":"Christoph","orcid":"0000-0001-8622-7887","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","full_name":"Lampert, Christoph"},{"full_name":"Peters, Jan","last_name":"Peters","first_name":"Jan"}],"oa_version":"None","date_updated":"2023-10-17T07:58:59Z","date_created":"2018-12-11T12:00:19Z","type":"conference","publist_id":"3828"},{"article_processing_charge":"No","day":"01","month":"10","doi":"10.4213/rm9503","date_published":"2012-10-01T00:00:00Z","language":[{"iso":"eng"}],"citation":{"chicago":"Edelsbrunner, Herbert, and Nataliya Strelkova. “On the Configuration Space for the Shortest Networks.” Russian Mathematical Surveys. Russian Academy of Sciences, 2012. https://doi.org/10.4213/rm9503.","short":"H. Edelsbrunner, N. Strelkova, Russian Mathematical Surveys 67 (2012) 1167–1168.","mla":"Edelsbrunner, Herbert, and Nataliya Strelkova. “On the Configuration Space for the Shortest Networks.” Russian Mathematical Surveys, vol. 67, no. 6, Russian Academy of Sciences, 2012, pp. 1167–1168, doi:10.4213/rm9503.","apa":"Edelsbrunner, H., & Strelkova, N. (2012). On the configuration space for the shortest networks. Russian Mathematical Surveys. Russian Academy of Sciences. https://doi.org/10.4213/rm9503","ieee":"H. Edelsbrunner and N. Strelkova, “On the configuration space for the shortest networks,” Russian Mathematical Surveys, vol. 67, no. 6. Russian Academy of Sciences, pp. 1167–1168, 2012.","ista":"Edelsbrunner H, Strelkova N. 2012. On the configuration space for the shortest networks. Russian Mathematical Surveys. 67(6), 1167–1168.","ama":"Edelsbrunner H, Strelkova N. On the configuration space for the shortest networks. Russian Mathematical Surveys. 2012;67(6):1167–1168. doi:10.4213/rm9503"},"publication":"Russian Mathematical Surveys","page":"1167–1168","quality_controlled":"1","issue":"6","publist_id":"3831","type":"journal_article","author":[{"full_name":"Edelsbrunner, Herbert","orcid":"0000-0002-9823-6833","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","last_name":"Edelsbrunner","first_name":"Herbert"},{"last_name":"Strelkova","first_name":"Nataliya","full_name":"Strelkova, Nataliya"}],"oa_version":"None","volume":67,"date_updated":"2023-10-17T11:40:39Z","date_created":"2018-12-11T12:00:18Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"2912","year":"2012","department":[{"_id":"HeEd"}],"intvolume":" 67","publisher":"Russian Academy of Sciences","title":"On the configuration space for the shortest networks","publication_status":"published","status":"public"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"3127","year":"2012","publisher":"ML Research Press","department":[{"_id":"ChLa"},{"_id":"HeEd"}],"title":"The most persistent soft-clique in a set of sampled graphs","publication_status":"published","status":"public","author":[{"full_name":"Quadrianto, Novi","first_name":"Novi","last_name":"Quadrianto"},{"last_name":"Lampert","first_name":"Christoph","orcid":"0000-0001-8622-7887","id":"40C20FD2-F248-11E8-B48F-1D18A9856A87","full_name":"Lampert, Christoph"},{"full_name":"Chen, Chao","id":"3E92416E-F248-11E8-B48F-1D18A9856A87","last_name":"Chen","first_name":"Chao"}],"oa_version":"Preprint","date_updated":"2023-10-17T11:55:06Z","date_created":"2018-12-11T12:01:33Z","type":"conference","publist_id":"3572","abstract":[{"text":"When searching for characteristic subpatterns in potentially noisy graph data, it appears self-evident that having multiple observations would be better than having just one. However, it turns out that the inconsistencies introduced when different graph instances have different edge sets pose a serious challenge. In this work we address this challenge for the problem of finding maximum weighted cliques.\r\n We introduce the concept of most persistent soft-clique. This is subset of vertices, that 1) is almost fully or at least densely connected, 2) occurs in all or almost all graph instances, and 3) has the maximum weight. We present a measure of clique-ness, that essentially counts the number of edge missing to make a subset of vertices into a clique. With this measure, we show that the problem of finding the most persistent soft-clique problem can be cast either as: a) a max-min two person game optimization problem, or b) a min-min soft margin optimization problem. Both formulations lead to the same solution when using a partial Lagrangian method to solve the optimization problems. By experiments on synthetic data and on real social network data, we show that the proposed method is able to reliably find soft cliques in graph data, even if that is distorted by random noise or unreliable observations.","lang":"eng"}],"main_file_link":[{"url":"http://arxiv.org/abs/1206.4652","open_access":"1"}],"citation":{"chicago":"Quadrianto, Novi, Christoph Lampert, and Chao Chen. “The Most Persistent Soft-Clique in a Set of Sampled Graphs.” In Proceedings of the 29th International Conference on Machine Learning, 211–18. ML Research Press, 2012.","short":"N. Quadrianto, C. Lampert, C. Chen, in:, Proceedings of the 29th International Conference on Machine Learning, ML Research Press, 2012, pp. 211–218.","mla":"Quadrianto, Novi, et al. “The Most Persistent Soft-Clique in a Set of Sampled Graphs.” Proceedings of the 29th International Conference on Machine Learning, ML Research Press, 2012, pp. 211–18.","apa":"Quadrianto, N., Lampert, C., & Chen, C. (2012). The most persistent soft-clique in a set of sampled graphs. In Proceedings of the 29th International Conference on Machine Learning (pp. 211–218). Edinburgh, United Kingdom: ML Research Press.","ieee":"N. Quadrianto, C. Lampert, and C. Chen, “The most persistent soft-clique in a set of sampled graphs,” in Proceedings of the 29th International Conference on Machine Learning, Edinburgh, United Kingdom, 2012, pp. 211–218.","ista":"Quadrianto N, Lampert C, Chen C. 2012. The most persistent soft-clique in a set of sampled graphs. Proceedings of the 29th International Conference on Machine Learning. ICML: International Conference on Machine Learning, 211–218.","ama":"Quadrianto N, Lampert C, Chen C. The most persistent soft-clique in a set of sampled graphs. In: Proceedings of the 29th International Conference on Machine Learning. ML Research Press; 2012:211-218."},"oa":1,"publication":"Proceedings of the 29th International Conference on Machine Learning","page":"211-218","quality_controlled":"1","date_published":"2012-06-01T00:00:00Z","conference":{"name":"ICML: International Conference on Machine Learning","end_date":"2012-07-01","start_date":"2012-06-26","location":"Edinburgh, United Kingdom"},"language":[{"iso":"eng"}],"scopus_import":"1","article_processing_charge":"No","day":"01","month":"06"},{"oa_version":"Published Version","file":[{"relation":"main_file","file_id":"7819","checksum":"6954bfe9d7f4119fbdda7a11cf0f5c67","date_created":"2020-05-11T12:40:39Z","date_updated":"2020-07-14T12:45:52Z","access_level":"open_access","file_name":"JTNB_2012__24_3_729_0.pdf","file_size":819275,"content_type":"application/pdf","creator":"dernst"}],"_id":"2904","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Weak multipliers for generalized van der Corput sequences","ddc":["510"],"status":"public","intvolume":" 24","abstract":[{"text":"Generalized van der Corput sequences are onedimensional, infinite sequences in the unit interval. They are generated from permutations in integer base b and are the building blocks of the multi-dimensional Halton sequences. Motivated by recent progress of Atanassov on the uniform distribution behavior of Halton sequences, we study, among others, permutations of the form P(i) = ai (mod b) for coprime integers a and b. We show that multipliers a that either divide b - 1 or b + 1 generate van der Corput sequences with weak distribution properties. We give explicit lower bounds for the asymptotic distribution behavior of these sequences and relate them to sequences generated from the identity permutation in smaller bases, which are, due to Faure, the weakest distributed generalized van der Corput sequences.","lang":"eng"},{"lang":"fre","text":"Les suites de Van der Corput généralisées sont dessuites unidimensionnelles et infinies dans l’intervalle de l’unité.Elles sont générées par permutations des entiers de la basebetsont les éléments constitutifs des suites multi-dimensionnelles deHalton. Suites aux progrès récents d’Atanassov concernant le com-portement de distribution uniforme des suites de Halton nous nousintéressons aux permutations de la formuleP(i) =ai(modb)pour les entiers premiers entre euxaetb. Dans cet article nousidentifions des multiplicateursagénérant des suites de Van derCorput ayant une mauvaise distribution. Nous donnons les bornesinférieures explicites pour cette distribution asymptotique asso-ciée à ces suites et relions ces dernières aux suites générées parpermutation d’identité, qui sont, selon Faure, les moins bien dis-tribuées des suites généralisées de Van der Corput dans une basedonnée."}],"issue":"3","type":"journal_article","date_published":"2012-01-01T00:00:00Z","publication":"Journal de Theorie des Nombres des Bordeaux","citation":{"short":"F. Pausinger, Journal de Theorie Des Nombres Des Bordeaux 24 (2012) 729–749.","mla":"Pausinger, Florian. “Weak Multipliers for Generalized van Der Corput Sequences.” Journal de Theorie Des Nombres Des Bordeaux, vol. 24, no. 3, Université de Bordeaux, 2012, pp. 729–49, doi:10.5802/jtnb.819.","chicago":"Pausinger, Florian. “Weak Multipliers for Generalized van Der Corput Sequences.” Journal de Theorie Des Nombres Des Bordeaux. Université de Bordeaux, 2012. https://doi.org/10.5802/jtnb.819.","ama":"Pausinger F. Weak multipliers for generalized van der Corput sequences. Journal de Theorie des Nombres des Bordeaux. 2012;24(3):729-749. doi:10.5802/jtnb.819","ieee":"F. Pausinger, “Weak multipliers for generalized van der Corput sequences,” Journal de Theorie des Nombres des Bordeaux, vol. 24, no. 3. Université de Bordeaux, pp. 729–749, 2012.","apa":"Pausinger, F. (2012). Weak multipliers for generalized van der Corput sequences. Journal de Theorie Des Nombres Des Bordeaux. Université de Bordeaux. https://doi.org/10.5802/jtnb.819","ista":"Pausinger F. 2012. Weak multipliers for generalized van der Corput sequences. Journal de Theorie des Nombres des Bordeaux. 24(3), 729–749."},"article_type":"original","page":"729 - 749","day":"01","has_accepted_license":"1","article_processing_charge":"No","scopus_import":"1","author":[{"first_name":"Florian","last_name":"Pausinger","id":"2A77D7A2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8379-3768","full_name":"Pausinger, Florian"}],"date_updated":"2023-10-18T07:53:47Z","date_created":"2018-12-11T12:00:15Z","volume":24,"year":"2012","publication_status":"published","department":[{"_id":"HeEd"}],"publisher":"Université de Bordeaux","file_date_updated":"2020-07-14T12:45:52Z","publist_id":"3843","doi":"10.5802/jtnb.819","language":[{"iso":"eng"}],"oa":1,"quality_controlled":"1","month":"01","publication_identifier":{"eissn":["2118-8572"],"issn":["1246-7405"]}},{"abstract":[{"text":"We present an algorithm for simplifying linear cartographic objects and results obtained with a computer program implementing this algorithm. ","lang":"eng"}],"issue":"6","publist_id":"3845","type":"journal_article","author":[{"full_name":"Edelsbrunner, Herbert","id":"3FB178DA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-9823-6833","first_name":"Herbert","last_name":"Edelsbrunner"},{"last_name":"Musin","first_name":"Oleg","full_name":"Musin, Oleg"},{"first_name":"Alexey","last_name":"Ukhalov","full_name":"Ukhalov, Alexey"},{"first_name":"Olga","last_name":"Yakimova","full_name":"Yakimova, Olga"},{"last_name":"Alexeev","first_name":"Vladislav","full_name":"Alexeev, Vladislav"},{"full_name":"Bogaevskaya, Victoriya","last_name":"Bogaevskaya","first_name":"Victoriya"},{"full_name":"Gorohov, Andrey","last_name":"Gorohov","first_name":"Andrey"},{"last_name":"Preobrazhenskaya","first_name":"Margarita","full_name":"Preobrazhenskaya, Margarita"}],"date_created":"2018-12-11T12:00:15Z","date_updated":"2023-10-18T07:34:45Z","oa_version":"Published Version","volume":19,"_id":"2902","year":"2012","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_status":"published","title":"Fractal and computational geometry for generalizing cartographic objects","status":"public","intvolume":" 19","department":[{"_id":"HeEd"}],"publisher":"Russian Academy of Sciences","month":"12","day":"01","article_processing_charge":"No","date_published":"2012-12-01T00:00:00Z","language":[{"iso":"rus"}],"publication":"Modeling and Analysis of Information Systems","citation":{"short":"H. Edelsbrunner, O. Musin, A. Ukhalov, O. Yakimova, V. Alexeev, V. Bogaevskaya, A. Gorohov, M. Preobrazhenskaya, Modeling and Analysis of Information Systems 19 (2012) 152–160.","mla":"Edelsbrunner, Herbert, et al. “Fractal and computational geometry for generalizing cartographic objects.” Modeling and Analysis of Information Systems, vol. 19, no. 6, Russian Academy of Sciences, 2012, pp. 152–60.","chicago":"Edelsbrunner, Herbert, Oleg Musin, Alexey Ukhalov, Olga Yakimova, Vladislav Alexeev, Victoriya Bogaevskaya, Andrey Gorohov, and Margarita Preobrazhenskaya. “Fractal and computational geometry for generalizing cartographic objects.” Modeling and Analysis of Information Systems. Russian Academy of Sciences, 2012.","ama":"Edelsbrunner H, Musin O, Ukhalov A, et al. Fractal and computational geometry for generalizing cartographic objects. Modeling and Analysis of Information Systems. 2012;19(6):152-160.","apa":"Edelsbrunner, H., Musin, O., Ukhalov, A., Yakimova, O., Alexeev, V., Bogaevskaya, V., … Preobrazhenskaya, M. (2012). Fractal and computational geometry for generalizing cartographic objects. Modeling and Analysis of Information Systems. Russian Academy of Sciences.","ieee":"H. Edelsbrunner et al., “Fractal and computational geometry for generalizing cartographic objects,” Modeling and Analysis of Information Systems, vol. 19, no. 6. Russian Academy of Sciences, pp. 152–160, 2012.","ista":"Edelsbrunner H, Musin O, Ukhalov A, Yakimova O, Alexeev V, Bogaevskaya V, Gorohov A, Preobrazhenskaya M. 2012. Fractal and computational geometry for generalizing cartographic objects. Modeling and Analysis of Information Systems. 19(6), 152–160."},"main_file_link":[{"url":"http://mi.mathnet.ru/eng/mais280","open_access":"1"}],"oa":1,"quality_controlled":"1","article_type":"original","page":"152 - 160"},{"acknowledgement":"This work was supported by the National Science Foundation under Career Grant No. DMR-0846426. We thank Josep C. Pàmies and William L. Miller for helpful discussions.","year":"2011","publisher":"Royal Society of Chemistry","publication_status":"published","author":[{"full_name":"Šarić, Anđela","id":"bf63d406-f056-11eb-b41d-f263a6566d8b","orcid":"0000-0002-7854-2139","first_name":"Anđela","last_name":"Šarić"},{"first_name":"Angelo","last_name":"Cacciuto","full_name":"Cacciuto, Angelo"}],"volume":7,"date_updated":"2021-11-29T15:12:10Z","date_created":"2021-11-29T14:33:18Z","article_number":"8324","extern":"1","oa":1,"external_id":{"arxiv":["1106.2995"]},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1106.2995"}],"quality_controlled":"1","doi":"10.1039/c1sm05773a","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1744-6848"],"issn":["1744-683X"]},"month":"08","_id":"10389","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","intvolume":" 7","status":"public","title":"Soft elastic surfaces as a platform for particle self-assembly","oa_version":"Preprint","type":"journal_article","issue":"18","abstract":[{"text":"We perform numerical simulations to study self-assembly of nanoparticles mediated by an elastic planar surface. We show how the nontrivial elastic response to deformations of these surfaces leads to anisotropic interactions between the particles resulting in aggregates having different geometrical features. The morphology of the patterns can be controlled by the mechanical properties of the surface and the strength of the particle adhesion. We use simple scaling arguments to understand the formation of the different structures, and we show how the adhering particles can cause the underlying elastic substrate to wrinkle if two of its opposite edges are clamped. Finally, we discuss the implications of our results and suggest how elastic surfaces could be used in nanofabrication.","lang":"eng"}],"citation":{"chicago":"Šarić, Anđela, and Angelo Cacciuto. “Soft Elastic Surfaces as a Platform for Particle Self-Assembly.” Soft Matter. Royal Society of Chemistry, 2011. https://doi.org/10.1039/c1sm05773a.","short":"A. Šarić, A. Cacciuto, Soft Matter 7 (2011).","mla":"Šarić, Anđela, and Angelo Cacciuto. “Soft Elastic Surfaces as a Platform for Particle Self-Assembly.” Soft Matter, vol. 7, no. 18, 8324, Royal Society of Chemistry, 2011, doi:10.1039/c1sm05773a.","ieee":"A. Šarić and A. Cacciuto, “Soft elastic surfaces as a platform for particle self-assembly,” Soft Matter, vol. 7, no. 18. Royal Society of Chemistry, 2011.","apa":"Šarić, A., & Cacciuto, A. (2011). Soft elastic surfaces as a platform for particle self-assembly. Soft Matter. Royal Society of Chemistry. https://doi.org/10.1039/c1sm05773a","ista":"Šarić A, Cacciuto A. 2011. Soft elastic surfaces as a platform for particle self-assembly. Soft Matter. 7(18), 8324.","ama":"Šarić A, Cacciuto A. Soft elastic surfaces as a platform for particle self-assembly. Soft Matter. 2011;7(18). doi:10.1039/c1sm05773a"},"publication":"Soft Matter","article_type":"original","date_published":"2011-08-08T00:00:00Z","scopus_import":"1","keyword":["condensed matter physics","general chemistry"],"article_processing_charge":"No","day":"08"},{"status":"public","title":"Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu inf states of Cs2","publication_status":"published","intvolume":" 83","publisher":"American Physical Society","_id":"1050","acknowledgement":"The work in Temple University was supported by NSF grant no. PHY-0855502. S.K. acknowledges support from AFOSR and from NSF grant no. PHY-1005453. S.A., C.M., and J.H. were supported by NSF grants no. PHY-0652938 and PHY-0968898. The work at Stony Brook was supported by NSF grants no. PHY-0652459 and PHY-0968905. The work in Tsinghua University was supported by NSFC of China, under grant no. 20773072. The Moscow team thanks the Russian Foundation for Basic Researches by the grant no. 10-03-00195 and MSU Priority Direction 2.3. M.T. and R.F. are grateful to Ilze Klincare, Olga Nikolayeva, and Artis Kruzins for their help in spectra analysis, as well as appreciate the support from the ESF 2009/0223/1DP/1.1.1.2.0/09/APIA/VIAA/008 project.","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2011","date_created":"2018-12-11T11:49:53Z","date_updated":"2021-01-12T06:47:55Z","volume":83,"oa_version":"Preprint","author":[{"full_name":"Bai, Jianmei","last_name":"Bai","first_name":"Jianmei"},{"full_name":"Ahmed, Ergin","last_name":"Ahmed","first_name":"Ergin"},{"full_name":"Beser, Bediha","last_name":"Beser","first_name":"Bediha"},{"full_name":"Guan, Yafei","first_name":"Yafei","last_name":"Guan"},{"full_name":"Kotochigova, Svetlana","first_name":"Svetlana","last_name":"Kotochigova"},{"last_name":"Lyyra","first_name":"Marjatta","full_name":"Lyyra, Marjatta"},{"last_name":"Ashman","first_name":"Seth","full_name":"Ashman, Seth"},{"full_name":"Wolfe, Christopher","last_name":"Wolfe","first_name":"Christopher"},{"full_name":"Huennekens, John","last_name":"Huennekens","first_name":"John"},{"full_name":"Xie, Feng","first_name":"Feng","last_name":"Xie"},{"full_name":"Li, Dan","last_name":"Li","first_name":"Dan"},{"full_name":"Li, Li","first_name":"Li","last_name":"Li"},{"last_name":"Tamanis","first_name":"Maris","full_name":"Tamanis, Maris"},{"first_name":"Ruvin","last_name":"Ferber","full_name":"Ferber, Ruvin"},{"full_name":"Drozdova, Anastasia","first_name":"Anastasia","last_name":"Drozdova"},{"full_name":"Pazyuk, Elena","last_name":"Pazyuk","first_name":"Elena"},{"first_name":"Andrey","last_name":"Stolyarov","full_name":"Stolyarov, Andrey"},{"full_name":"Danzl, Johann G","last_name":"Danzl","first_name":"Johann G","orcid":"0000-0001-8559-3973","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Nägerl, Hanns","last_name":"Nägerl","first_name":"Hanns"},{"first_name":"Nadia","last_name":"Bouloufa","full_name":"Bouloufa, Nadia"},{"full_name":"Dulieu, Olivier","last_name":"Dulieu","first_name":"Olivier"},{"first_name":"Claude","last_name":"Amiot","full_name":"Amiot, Claude"},{"last_name":"Salami","first_name":"Houssam","full_name":"Salami, Houssam"},{"full_name":"Bergeman, Thomas","first_name":"Thomas","last_name":"Bergeman"}],"type":"journal_article","extern":"1","abstract":[{"text":"We present experimentally derived potential curves 1?and spin-orbit interaction functions for the strongly perturbed AΣu+ 3?and bΠu states of the cesium dimer. The results are based on data from several sources. Laser-induced fluorescence Fourier transform spectroscopy (LIF FTS) was used some time ago in the Laboratoire Aimé Cotton primarily to study the XΣg+ state. More recent work at Tsinghua University provides information from moderate 3?resolution spectroscopy on the lowest levels of the bΠ0u± state as well as additional high-resolution data. From Innsbruck University, we have precision data obtained with cold Cs2 molecules. Recent data from Temple University was obtained using the optical-optical double resonance polarization spectroscopy technique, and finally, a group at the University of Latvia has added additional LIF FTS data. In the Hamiltonian matrix, we have used analytic potentials (the expanded Morse oscillator form) with both finite-difference (FD) coupled-channel and discrete variable representation (DVR) calculations of the term values. Fitted diagonal and off-diagonal spin-orbit functions are obtained and compared with ab initio results from Temple and Moscow State universities.","lang":"eng"}],"publist_id":"6339","issue":"3","publication":" Physical Review A - Atomic, Molecular, and Optical Physics","external_id":{"arxiv":["1101.5412"]},"oa":1,"citation":{"ista":"Bai J, Ahmed E, Beser B, Guan Y, Kotochigova S, Lyyra M, Ashman S, Wolfe C, Huennekens J, Xie F, Li D, Li L, Tamanis M, Ferber R, Drozdova A, Pazyuk E, Stolyarov A, Danzl JG, Nägerl H, Bouloufa N, Dulieu O, Amiot C, Salami H, Bergeman T. 2011. Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu inf states of Cs2. Physical Review A - Atomic, Molecular, and Optical Physics. 83(3).","apa":"Bai, J., Ahmed, E., Beser, B., Guan, Y., Kotochigova, S., Lyyra, M., … Bergeman, T. (2011). Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu inf states of Cs2. Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society. https://doi.org/10.1103/PhysRevA.83.032514","ieee":"J. Bai et al., “Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu inf states of Cs2,” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 83, no. 3. American Physical Society, 2011.","ama":"Bai J, Ahmed E, Beser B, et al. Global analysis of data on the spin-orbit-coupled A 1Σu+ and b 3Πu inf states of Cs2. Physical Review A - Atomic, Molecular, and Optical Physics. 2011;83(3). doi:10.1103/PhysRevA.83.032514","chicago":"Bai, Jianmei, Ergin Ahmed, Bediha Beser, Yafei Guan, Svetlana Kotochigova, Marjatta Lyyra, Seth Ashman, et al. “Global Analysis of Data on the Spin-Orbit-Coupled A 1Σu+ and b 3Πu Inf States of Cs2.” Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society, 2011. https://doi.org/10.1103/PhysRevA.83.032514.","mla":"Bai, Jianmei, et al. “Global Analysis of Data on the Spin-Orbit-Coupled A 1Σu+ and b 3Πu Inf States of Cs2.” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 83, no. 3, American Physical Society, 2011, doi:10.1103/PhysRevA.83.032514.","short":"J. Bai, E. Ahmed, B. Beser, Y. Guan, S. Kotochigova, M. Lyyra, S. Ashman, C. Wolfe, J. Huennekens, F. Xie, D. Li, L. Li, M. Tamanis, R. Ferber, A. Drozdova, E. Pazyuk, A. Stolyarov, J.G. Danzl, H. Nägerl, N. Bouloufa, O. Dulieu, C. Amiot, H. Salami, T. Bergeman, Physical Review A - Atomic, Molecular, and Optical Physics 83 (2011)."},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1101.5412"}],"language":[{"iso":"eng"}],"date_published":"2011-03-28T00:00:00Z","doi":"10.1103/PhysRevA.83.032514","day":"28","month":"03","article_processing_charge":"No"},{"day":"01","month":"01","article_processing_charge":"No","publication":"Journal of Physics: Conference Series","external_id":{"arxiv":["1011.0179"]},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1011.0179"}],"oa":1,"citation":{"ieee":"H. Nägerl, M. Mark, E. Haller, M. Gustavsson, R. Hart, and J. G. Danzl, “Ultracold and dense samples of ground-state molecules in lattice potentials,” Journal of Physics: Conference Series, vol. 264, no. 1. IOP Publishing Ltd., 2011.","apa":"Nägerl, H., Mark, M., Haller, E., Gustavsson, M., Hart, R., & Danzl, J. G. (2011). Ultracold and dense samples of ground-state molecules in lattice potentials. Journal of Physics: Conference Series. IOP Publishing Ltd. https://doi.org/10.1088/1742-6596/264/1/012015","ista":"Nägerl H, Mark M, Haller E, Gustavsson M, Hart R, Danzl JG. 2011. Ultracold and dense samples of ground-state molecules in lattice potentials. Journal of Physics: Conference Series. 264(1).","ama":"Nägerl H, Mark M, Haller E, Gustavsson M, Hart R, Danzl JG. Ultracold and dense samples of ground-state molecules in lattice potentials. Journal of Physics: Conference Series. 2011;264(1). doi:10.1088/1742-6596/264/1/012015","chicago":"Nägerl, Hanns, Manfred Mark, Elmar Haller, Mattias Gustavsson, Russell Hart, and Johann G Danzl. “Ultracold and Dense Samples of Ground-State Molecules in Lattice Potentials.” Journal of Physics: Conference Series. IOP Publishing Ltd., 2011. https://doi.org/10.1088/1742-6596/264/1/012015.","short":"H. Nägerl, M. Mark, E. Haller, M. Gustavsson, R. Hart, J.G. Danzl, Journal of Physics: Conference Series 264 (2011).","mla":"Nägerl, Hanns, et al. “Ultracold and Dense Samples of Ground-State Molecules in Lattice Potentials.” Journal of Physics: Conference Series, vol. 264, no. 1, IOP Publishing Ltd., 2011, doi:10.1088/1742-6596/264/1/012015."},"date_published":"2011-01-01T00:00:00Z","doi":"10.1088/1742-6596/264/1/012015","language":[{"iso":"eng"}],"type":"journal_article","abstract":[{"text":"We produce an ultracold and dense sample of rovibronic ground state Cs 2 molecules close to the regime of quantum degeneracy, in a single hyperfine level, in the presence of an optical lattice. The molecules are individually trapped, in the motional ground state of an optical lattice well, with a lifetime of 8 s. For preparation, we start with a zero-temperature atomic Mott-insulator state with optimized double-site occupancy and efficiently associate weakly-bound dimer molecules on a Feshbach resonance. Despite extremely weak Franck-Condon wavefunction overlap, the molecules are subsequently transferred with >50% efficiency to the rovibronic ground state by a stimulated four-photon process. Our results present a crucial step towards the generation of Bose-Einstein condensates of ground-state molecules and, when suitably generalized to polar heteronuclear molecules such as RbCs, the realization of dipolar many-body quantum-gas phases in periodic potentials.","lang":"eng"}],"publist_id":"6340","issue":"1","extern":"1","year":"2011","_id":"1048","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","acknowledgement":"We thank H. Ritsch, N. Bouloufa, O. Dulieu, J. Aldegunde, J. M. Hutson, H. Salami, T. Bergeman, S. D ̈urr, and K. Bergmann for valuable discussions and H. Telle, H. Schnatz, B. Lipphardt, and J. Alnis for sharing technical expertise. We are indebted to R. Grimm for generous support. We gratefully acknowledge funding by the Austrian Ministry of Science and\r\nResearch (Bundesministerium f ̈ur Wissenschaft und Forschung) and the Austrian Science Fund\r\n(Fonds zur F ̈orderung der wissenschaftlichen Forschung) in the form of a START prize grant\r\nand by the European Science Foundation within the framework of the EuroQUASAR collective\r\nresearch project QuDeGPM (Project I 153-N16) and within the framework of the EuroQUAM\r\ncollective research project QuDipMol (Project I 124-N16). R.H. was supported by a Marie Curie\r\nInternational Incoming Fellowship within the 7th European Community Framework Programme","title":"Ultracold and dense samples of ground-state molecules in lattice potentials","status":"public","publication_status":"published","intvolume":" 264","publisher":"IOP Publishing Ltd.","author":[{"first_name":"Hanns","last_name":"Nägerl","full_name":"Nägerl, Hanns"},{"full_name":"Mark, Manfred","last_name":"Mark","first_name":"Manfred"},{"full_name":"Haller, Elmar","last_name":"Haller","first_name":"Elmar"},{"full_name":"Gustavsson, Mattias","first_name":"Mattias","last_name":"Gustavsson"},{"full_name":"Hart, Russell","last_name":"Hart","first_name":"Russell"},{"last_name":"Danzl","first_name":"Johann G","orcid":"0000-0001-8559-3973","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","full_name":"Danzl, Johann G"}],"date_updated":"2021-01-12T06:47:54Z","date_created":"2018-12-11T11:49:52Z","volume":264,"oa_version":"Preprint"},{"publist_id":"6336","extern":"1","acknowledgement":"We thank E. Haller for important contributions to the experimental work and R. Grimm for generous support. We acknowledge funding by the Austrian Science Fund (FWF) within\r\nproject Quantum Gases of Ground-State Molecules, project\r\nnumber P 21555-N20.","year":"2011","publisher":"Springer","publication_status":"published","author":[{"full_name":"Vexiau, Romain","first_name":"Romain","last_name":"Vexiau"},{"last_name":"Bouloufa","first_name":"Nadia","full_name":"Bouloufa, Nadia"},{"full_name":"Aymar, Mireille","last_name":"Aymar","first_name":"Mireille"},{"full_name":"Danzl, Johann G","first_name":"Johann G","last_name":"Danzl","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8559-3973"},{"full_name":"Mark, Manfred","first_name":"Manfred","last_name":"Mark"},{"full_name":"Nägerl, Hanns","last_name":"Nägerl","first_name":"Hanns"},{"full_name":"Dulieu, Olivier","first_name":"Olivier","last_name":"Dulieu"}],"volume":65,"date_created":"2018-12-11T11:49:53Z","date_updated":"2021-01-12T06:47:56Z","month":"11","oa":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1102.1793"}],"external_id":{"arxiv":["1102.1793"]},"doi":"10.1140/epjd/e2011-20085-4","language":[{"iso":"eng"}],"type":"journal_article","issue":"1-2","abstract":[{"text":"The present paper aims at finding optimal parameters for trapping of Cs 2 molecules in optical lattices, with the perspective of creating a quantum degenerate gas of ground-state molecules. We have calculated dynamic polarizabilities of Cs 2 molecules subject to an oscillating electric field, using accurate potential curves and electronic transition dipole moments. We show that for some particular wavelengths of the optical lattice, called "magic wavelengths", the polarizability of the ground-state molecules is equal to the one of a Feshbach molecule. As the creation of the sample of ground-state molecules relies on an adiabatic population transfer from weakly-bound molecules created on a Feshbach resonance, such a coincidence ensures that both the initial and final states are favorably trapped by the lattice light, allowing optimized transfer in agreement with the experimental observation.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"1052","intvolume":" 65","title":"Optimal trapping wavelengths of Cs 2 molecules in an optical lattice","status":"public","oa_version":"Preprint","article_processing_charge":"No","day":"01","citation":{"chicago":"Vexiau, Romain, Nadia Bouloufa, Mireille Aymar, Johann G Danzl, Manfred Mark, Hanns Nägerl, and Olivier Dulieu. “Optimal Trapping Wavelengths of Cs 2 Molecules in an Optical Lattice.” European Physical Journal D. Springer, 2011. https://doi.org/10.1140/epjd/e2011-20085-4.","mla":"Vexiau, Romain, et al. “Optimal Trapping Wavelengths of Cs 2 Molecules in an Optical Lattice.” European Physical Journal D, vol. 65, no. 1–2, Springer, 2011, pp. 243–50, doi:10.1140/epjd/e2011-20085-4.","short":"R. Vexiau, N. Bouloufa, M. Aymar, J.G. Danzl, M. Mark, H. Nägerl, O. Dulieu, European Physical Journal D 65 (2011) 243–250.","ista":"Vexiau R, Bouloufa N, Aymar M, Danzl JG, Mark M, Nägerl H, Dulieu O. 2011. Optimal trapping wavelengths of Cs 2 molecules in an optical lattice. European Physical Journal D. 65(1–2), 243–250.","apa":"Vexiau, R., Bouloufa, N., Aymar, M., Danzl, J. G., Mark, M., Nägerl, H., & Dulieu, O. (2011). Optimal trapping wavelengths of Cs 2 molecules in an optical lattice. European Physical Journal D. Springer. https://doi.org/10.1140/epjd/e2011-20085-4","ieee":"R. Vexiau et al., “Optimal trapping wavelengths of Cs 2 molecules in an optical lattice,” European Physical Journal D, vol. 65, no. 1–2. Springer, pp. 243–250, 2011.","ama":"Vexiau R, Bouloufa N, Aymar M, et al. Optimal trapping wavelengths of Cs 2 molecules in an optical lattice. European Physical Journal D. 2011;65(1-2):243-250. doi:10.1140/epjd/e2011-20085-4"},"publication":"European Physical Journal D","page":"243 - 250","date_published":"2011-11-01T00:00:00Z"},{"_id":"1051","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2011","acknowledgement":"We are indebted to R Grimm for generous support and we thank A Daley for valuable discussions. We gratefully acknowledge funding by the Austrian Science Fund (FWF) within project I153-N16 and within the framework of the European Science Foundation (ESF) EuroQUASAR collective research project QuDeGPM.","publication_status":"published","status":"public","title":"Demonstration of the temporal matter-wave Talbot effect for trapped matter waves","intvolume":" 13","publisher":"IOP Publishing Ltd.","author":[{"full_name":"Mark, Manfred","last_name":"Mark","first_name":"Manfred"},{"full_name":"Haller, Elmar","first_name":"Elmar","last_name":"Haller"},{"full_name":"Danzl, Johann G","orcid":"0000-0001-8559-3973","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","last_name":"Danzl","first_name":"Johann G"},{"first_name":"Katharina","last_name":"Lauber","full_name":"Lauber, Katharina"},{"full_name":"Gustavsson, Mattias","last_name":"Gustavsson","first_name":"Mattias"},{"full_name":"Nägerl, Hanns","first_name":"Hanns","last_name":"Nägerl"}],"date_updated":"2021-01-12T06:47:56Z","date_created":"2018-12-11T11:49:53Z","oa_version":"None","volume":13,"type":"journal_article","abstract":[{"lang":"eng","text":"We demonstrate the temporal Talbot effect for trapped matter waves using ultracold atoms in an optical lattice. We investigate the phase evolution of an array of essentially non-interacting matter waves and observe matter-wave collapse and revival in the form of a Talbot interference pattern. By using long expansion times, we image momentum space with sub-recoil resolution, allowing us to observe fractional Talbot fringes up to tenth order."}],"publist_id":"6338","extern":"1","publication":"New Journal of Physics","citation":{"ieee":"M. Mark, E. Haller, J. G. Danzl, K. Lauber, M. Gustavsson, and H. Nägerl, “Demonstration of the temporal matter-wave Talbot effect for trapped matter waves,” New Journal of Physics, vol. 13. IOP Publishing Ltd., 2011.","apa":"Mark, M., Haller, E., Danzl, J. G., Lauber, K., Gustavsson, M., & Nägerl, H. (2011). Demonstration of the temporal matter-wave Talbot effect for trapped matter waves. New Journal of Physics. IOP Publishing Ltd. https://doi.org/10.1088/1367-2630/13/8/085008","ista":"Mark M, Haller E, Danzl JG, Lauber K, Gustavsson M, Nägerl H. 2011. Demonstration of the temporal matter-wave Talbot effect for trapped matter waves. New Journal of Physics. 13.","ama":"Mark M, Haller E, Danzl JG, Lauber K, Gustavsson M, Nägerl H. Demonstration of the temporal matter-wave Talbot effect for trapped matter waves. New Journal of Physics. 2011;13. doi:10.1088/1367-2630/13/8/085008","chicago":"Mark, Manfred, Elmar Haller, Johann G Danzl, Katharina Lauber, Mattias Gustavsson, and Hanns Nägerl. “Demonstration of the Temporal Matter-Wave Talbot Effect for Trapped Matter Waves.” New Journal of Physics. IOP Publishing Ltd., 2011. https://doi.org/10.1088/1367-2630/13/8/085008.","short":"M. Mark, E. Haller, J.G. Danzl, K. Lauber, M. Gustavsson, H. Nägerl, New Journal of Physics 13 (2011).","mla":"Mark, Manfred, et al. “Demonstration of the Temporal Matter-Wave Talbot Effect for Trapped Matter Waves.” New Journal of Physics, vol. 13, IOP Publishing Ltd., 2011, doi:10.1088/1367-2630/13/8/085008."},"date_published":"2011-08-01T00:00:00Z","doi":"10.1088/1367-2630/13/8/085008","language":[{"iso":"eng"}],"day":"01","month":"08","article_processing_charge":"No"},{"type":"journal_article","extern":"1","issue":"17","publist_id":"6337","abstract":[{"text":"We perform precision measurements on a Mott-insulator quantum state of ultracold atoms with tunable interactions. We probe the dependence of the superfluid-to-Mott-insulator transition on the interaction strength and explore the limits of the standard Bose-Hubbard model description. By tuning the on-site interaction energies to values comparable to the interband separation, we are able to quantitatively measure number-dependent shifts in the excitation spectrum caused by effective multibody interactions.","lang":"eng"}],"publisher":"American Physical Society","intvolume":" 107","status":"public","title":"Precision measurements on a tunable Mott insulator of ultracold atoms","publication_status":"published","acknowledgement":"We are indebted to R. Grimm for generous support. We thank D. Boyanovsky, H. Büchler, P. Johnson, W. Niedenzu, and E. Tiesinga for fruitful discussions. We gratefully acknowledge funding by the Austrian Science Fund (FWF) within project I153-N16 and within the framework of the European Science Foundation (ESF) EuroQUASAR collective research project QuDeGPM.","_id":"1053","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2011","volume":107,"oa_version":"Preprint","date_updated":"2021-01-12T06:47:56Z","date_created":"2018-12-11T11:49:54Z","author":[{"first_name":"Manfred","last_name":"Mark","full_name":"Mark, Manfred"},{"first_name":"Elmar","last_name":"Haller","full_name":"Haller, Elmar"},{"full_name":"Lauber, Katharina","first_name":"Katharina","last_name":"Lauber"},{"full_name":"Danzl, Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8559-3973","first_name":"Johann G","last_name":"Danzl"},{"full_name":"Daley, Andrew","first_name":"Andrew","last_name":"Daley"},{"full_name":"Nägerl, Hanns","first_name":"Hanns","last_name":"Nägerl"}],"article_processing_charge":"No","month":"10","day":"18","oa":1,"citation":{"chicago":"Mark, Manfred, Elmar Haller, Katharina Lauber, Johann G Danzl, Andrew Daley, and Hanns Nägerl. “Precision Measurements on a Tunable Mott Insulator of Ultracold Atoms.” Physical Review Letters. American Physical Society, 2011. https://doi.org/10.1103/PhysRevLett.107.175301.","short":"M. Mark, E. Haller, K. Lauber, J.G. Danzl, A. Daley, H. Nägerl, Physical Review Letters 107 (2011).","mla":"Mark, Manfred, et al. “Precision Measurements on a Tunable Mott Insulator of Ultracold Atoms.” Physical Review Letters, vol. 107, no. 17, American Physical Society, 2011, doi:10.1103/PhysRevLett.107.175301.","ieee":"M. Mark, E. Haller, K. Lauber, J. G. Danzl, A. Daley, and H. Nägerl, “Precision measurements on a tunable Mott insulator of ultracold atoms,” Physical Review Letters, vol. 107, no. 17. American Physical Society, 2011.","apa":"Mark, M., Haller, E., Lauber, K., Danzl, J. G., Daley, A., & Nägerl, H. (2011). Precision measurements on a tunable Mott insulator of ultracold atoms. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.107.175301","ista":"Mark M, Haller E, Lauber K, Danzl JG, Daley A, Nägerl H. 2011. Precision measurements on a tunable Mott insulator of ultracold atoms. Physical Review Letters. 107(17).","ama":"Mark M, Haller E, Lauber K, Danzl JG, Daley A, Nägerl H. Precision measurements on a tunable Mott insulator of ultracold atoms. Physical Review Letters. 2011;107(17). doi:10.1103/PhysRevLett.107.175301"},"external_id":{"arxiv":["1107.1803"]},"main_file_link":[{"url":"https://arxiv.org/abs/1107.1803","open_access":"1"}],"publication":"Physical Review Letters","language":[{"iso":"eng"}],"doi":"10.1103/PhysRevLett.107.175301","date_published":"2011-10-18T00:00:00Z"},{"article_processing_charge":"No","day":"02","month":"12","external_id":{"arxiv":["1107.4516"]},"main_file_link":[{"url":"https://arxiv.org/abs/1107.4516","open_access":"1"}],"citation":{"ieee":"E. Haller et al., “Three-body correlation functions and recombination rates for bosons in three dimensions and one dimension,” Physical Review Letters, vol. 107, no. 23. American Physical Society, 2011.","apa":"Haller, E., Rabie, M., Mark, M., Danzl, J. G., Hart, R., Lauber, K., … Nägerl, H. (2011). Three-body correlation functions and recombination rates for bosons in three dimensions and one dimension. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.107.230404","ista":"Haller E, Rabie M, Mark M, Danzl JG, Hart R, Lauber K, Pupillo G, Nägerl H. 2011. Three-body correlation functions and recombination rates for bosons in three dimensions and one dimension. Physical Review Letters. 107(23).","ama":"Haller E, Rabie M, Mark M, et al. Three-body correlation functions and recombination rates for bosons in three dimensions and one dimension. Physical Review Letters. 2011;107(23). doi:10.1103/PhysRevLett.107.230404","chicago":"Haller, Elmar, Mahmoud Rabie, Manfred Mark, Johann G Danzl, Russell Hart, Katharina Lauber, Guido Pupillo, and Hanns Nägerl. “Three-Body Correlation Functions and Recombination Rates for Bosons in Three Dimensions and One Dimension.” Physical Review Letters. American Physical Society, 2011. https://doi.org/10.1103/PhysRevLett.107.230404.","short":"E. Haller, M. Rabie, M. Mark, J.G. Danzl, R. Hart, K. Lauber, G. Pupillo, H. Nägerl, Physical Review Letters 107 (2011).","mla":"Haller, Elmar, et al. “Three-Body Correlation Functions and Recombination Rates for Bosons in Three Dimensions and One Dimension.” Physical Review Letters, vol. 107, no. 23, American Physical Society, 2011, doi:10.1103/PhysRevLett.107.230404."},"oa":1,"publication":"Physical Review Letters","language":[{"iso":"eng"}],"date_published":"2011-12-02T00:00:00Z","doi":"10.1103/PhysRevLett.107.230404","type":"journal_article","extern":"1","publist_id":"6335","issue":"23","abstract":[{"lang":"eng","text":"We investigate local three-body correlations for bosonic particles in three dimensions and one dimension as a function of the interaction strength. The three-body correlation function g(3) is determined by measuring the three-body recombination rate in an ultracold gas of Cs atoms. In three dimensions, we measure the dependence of g(3) on the gas parameter in a BEC, finding good agreement with the theoretical prediction accounting for beyond-mean-field effects. In one dimension, we observe a reduction of g( 3) by several orders of magnitude upon increasing interactions from the weakly interacting BEC to the strongly interacting Tonks-Girardeau regime, in good agreement with predictions from the Lieb-Liniger model for all strengths of interaction."}],"publisher":"American Physical Society","intvolume":" 107","publication_status":"published","title":"Three-body correlation functions and recombination rates for bosons in three dimensions and one dimension","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"1054","year":"2011","acknowledgement":"We thank R. Grimm for generous support. We gratefully acknowledge funding by the Austrian Science Fund (FWF) within Project No. I153-N16 and within the framework of the European Science Foundation (ESF) EuroQUASAR collective research project QuDeGPM. G. P. acknowledges funding from the EU through NAME-QUAM and AQUTE.","volume":107,"oa_version":"Preprint","date_created":"2018-12-11T11:49:54Z","date_updated":"2021-01-12T06:47:57Z","author":[{"full_name":"Haller, Elmar","last_name":"Haller","first_name":"Elmar"},{"last_name":"Rabie","first_name":"Mahmoud","full_name":"Rabie, Mahmoud"},{"first_name":"Manfred","last_name":"Mark","full_name":"Mark, Manfred"},{"id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8559-3973","first_name":"Johann G","last_name":"Danzl","full_name":"Danzl, Johann G"},{"first_name":"Russell","last_name":"Hart","full_name":"Hart, Russell"},{"full_name":"Lauber, Katharina","first_name":"Katharina","last_name":"Lauber"},{"first_name":"Guido","last_name":"Pupillo","full_name":"Pupillo, Guido"},{"full_name":"Nägerl, Hanns","first_name":"Hanns","last_name":"Nägerl"}]},{"publication_identifier":{"eissn":["1540-8140"],"issn":["0021-9525"]},"month":"07","language":[{"iso":"eng"}],"doi":"10.1083/jcb.201012154","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1083/jcb.201012154"}],"external_id":{"pmid":["21727197"]},"oa":1,"extern":"1","volume":194,"date_updated":"2022-07-18T08:53:46Z","date_created":"2022-04-07T07:52:18Z","author":[{"full_name":"Talamas, Jessica A.","last_name":"Talamas","first_name":"Jessica A."},{"first_name":"Martin W","last_name":"HETZER","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X","full_name":"HETZER, Martin W"}],"publisher":"Rockefeller University Press","publication_status":"published","pmid":1,"year":"2011","article_processing_charge":"No","day":"04","keyword":["Cell Biology"],"scopus_import":"1","date_published":"2011-07-04T00:00:00Z","page":"27-37","article_type":"original","citation":{"short":"J.A. Talamas, M. Hetzer, Journal of Cell Biology 194 (2011) 27–37.","mla":"Talamas, Jessica A., and Martin Hetzer. “POM121 and Sun1 Play a Role in Early Steps of Interphase NPC Assembly.” Journal of Cell Biology, vol. 194, no. 1, Rockefeller University Press, 2011, pp. 27–37, doi:10.1083/jcb.201012154.","chicago":"Talamas, Jessica A., and Martin Hetzer. “POM121 and Sun1 Play a Role in Early Steps of Interphase NPC Assembly.” Journal of Cell Biology. Rockefeller University Press, 2011. https://doi.org/10.1083/jcb.201012154.","ama":"Talamas JA, Hetzer M. POM121 and Sun1 play a role in early steps of interphase NPC assembly. Journal of Cell Biology. 2011;194(1):27-37. doi:10.1083/jcb.201012154","apa":"Talamas, J. A., & Hetzer, M. (2011). POM121 and Sun1 play a role in early steps of interphase NPC assembly. Journal of Cell Biology. Rockefeller University Press. https://doi.org/10.1083/jcb.201012154","ieee":"J. A. Talamas and M. Hetzer, “POM121 and Sun1 play a role in early steps of interphase NPC assembly,” Journal of Cell Biology, vol. 194, no. 1. Rockefeller University Press, pp. 27–37, 2011.","ista":"Talamas JA, Hetzer M. 2011. POM121 and Sun1 play a role in early steps of interphase NPC assembly. Journal of Cell Biology. 194(1), 27–37."},"publication":"Journal of Cell Biology","issue":"1","abstract":[{"lang":"eng","text":"Nuclear pore complexes (NPCs) assemble at the end of mitosis during nuclear envelope (NE) reformation and into an intact NE as cells progress through interphase. Although recent studies have shown that NPC formation occurs by two different molecular mechanisms at two distinct cell cycle stages, little is known about the molecular players that mediate the fusion of the outer and inner nuclear membranes to form pores. In this paper, we provide evidence that the transmembrane nucleoporin (Nup), POM121, but not the Nup107–160 complex, is present at new pore assembly sites at a time that coincides with inner nuclear membrane (INM) and outer nuclear membrane (ONM) fusion. Overexpression of POM121 resulted in juxtaposition of the INM and ONM. Additionally, Sun1, an INM protein that is known to interact with the cytoskeleton, was specifically required for interphase assembly and localized with POM121 at forming pores. We propose a model in which POM121 and Sun1 interact transiently to promote early steps of interphase NPC assembly."}],"type":"journal_article","oa_version":"Published Version","intvolume":" 194","title":"POM121 and Sun1 play a role in early steps of interphase NPC assembly","status":"public","_id":"11094","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd"},{"type":"journal_article","issue":"1","abstract":[{"text":"As the gatekeepers of the eukaryotic cell nucleus, nuclear pore complexes (NPCs) mediate all molecular trafficking between the nucleoplasm and the cytoplasm. In recent years, transport-independent functions of NPC components, nucleoporins, have been identified including roles in chromatin organization and gene regulation. Here, we summarize our current view of the NPC as a dynamic hub for the integration of chromatin regulation and nuclear trafficking and discuss the functional interplay between nucleoporins and the nuclear genome.","lang":"eng"}],"intvolume":" 23","status":"public","title":"Functional interactions between nucleoporins and chromatin","_id":"11096","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","oa_version":"None","keyword":["Cell Biology"],"scopus_import":"1","article_processing_charge":"No","day":"01","page":"65-70","article_type":"original","citation":{"ista":"Liang Y, Hetzer M. 2011. Functional interactions between nucleoporins and chromatin. Current Opinion in Cell Biology. 23(1), 65–70.","apa":"Liang, Y., & Hetzer, M. (2011). Functional interactions between nucleoporins and chromatin. Current Opinion in Cell Biology. Elsevier. https://doi.org/10.1016/j.ceb.2010.09.008","ieee":"Y. Liang and M. Hetzer, “Functional interactions between nucleoporins and chromatin,” Current Opinion in Cell Biology, vol. 23, no. 1. Elsevier, pp. 65–70, 2011.","ama":"Liang Y, Hetzer M. Functional interactions between nucleoporins and chromatin. Current Opinion in Cell Biology. 2011;23(1):65-70. doi:10.1016/j.ceb.2010.09.008","chicago":"Liang, Yun, and Martin Hetzer. “Functional Interactions between Nucleoporins and Chromatin.” Current Opinion in Cell Biology. Elsevier, 2011. https://doi.org/10.1016/j.ceb.2010.09.008.","mla":"Liang, Yun, and Martin Hetzer. “Functional Interactions between Nucleoporins and Chromatin.” Current Opinion in Cell Biology, vol. 23, no. 1, Elsevier, 2011, pp. 65–70, doi:10.1016/j.ceb.2010.09.008.","short":"Y. Liang, M. Hetzer, Current Opinion in Cell Biology 23 (2011) 65–70."},"publication":"Current Opinion in Cell Biology","date_published":"2011-02-01T00:00:00Z","extern":"1","publisher":"Elsevier","publication_status":"published","pmid":1,"year":"2011","volume":23,"date_updated":"2022-07-18T08:53:48Z","date_created":"2022-04-07T07:52:37Z","author":[{"last_name":"Liang","first_name":"Yun","full_name":"Liang, Yun"},{"full_name":"HETZER, Martin W","orcid":"0000-0002-2111-992X","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","last_name":"HETZER","first_name":"Martin W"}],"publication_identifier":{"issn":["0955-0674"]},"month":"02","quality_controlled":"1","external_id":{"pmid":["21030234"]},"language":[{"iso":"eng"}],"doi":"10.1016/j.ceb.2010.09.008"},{"volume":23,"date_updated":"2022-07-18T08:39:40Z","date_created":"2022-04-07T07:52:27Z","author":[{"orcid":"0000-0002-2111-992X","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","last_name":"HETZER","first_name":"Martin W","full_name":"HETZER, Martin W"},{"last_name":"Cavalli","first_name":"Giacomo","full_name":"Cavalli, Giacomo"}],"publisher":"Elsevier","publication_status":"published","pmid":1,"year":"2011","extern":"1","language":[{"iso":"eng"}],"doi":"10.1016/j.ceb.2011.04.013","quality_controlled":"1","external_id":{"pmid":["21592757"]},"publication_identifier":{"issn":["0955-0674"]},"month":"06","oa_version":"None","intvolume":" 23","title":"Editorial overview","status":"public","_id":"11095","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","issue":"3","type":"journal_article","date_published":"2011-06-01T00:00:00Z","page":"255-257","article_type":"letter_note","citation":{"ama":"Hetzer M, Cavalli G. Editorial overview. Current Opinion in Cell Biology. 2011;23(3):255-257. doi:10.1016/j.ceb.2011.04.013","ista":"Hetzer M, Cavalli G. 2011. Editorial overview. Current Opinion in Cell Biology. 23(3), 255–257.","ieee":"M. Hetzer and G. Cavalli, “Editorial overview,” Current Opinion in Cell Biology, vol. 23, no. 3. Elsevier, pp. 255–257, 2011.","apa":"Hetzer, M., & Cavalli, G. (2011). Editorial overview. Current Opinion in Cell Biology. Elsevier. https://doi.org/10.1016/j.ceb.2011.04.013","mla":"Hetzer, Martin, and Giacomo Cavalli. “Editorial Overview.” Current Opinion in Cell Biology, vol. 23, no. 3, Elsevier, 2011, pp. 255–57, doi:10.1016/j.ceb.2011.04.013.","short":"M. Hetzer, G. Cavalli, Current Opinion in Cell Biology 23 (2011) 255–257.","chicago":"Hetzer, Martin, and Giacomo Cavalli. “Editorial Overview.” Current Opinion in Cell Biology. Elsevier, 2011. https://doi.org/10.1016/j.ceb.2011.04.013."},"publication":"Current Opinion in Cell Biology","article_processing_charge":"No","day":"01","keyword":["Cell Biology"],"scopus_import":"1"},{"type":"journal_article","abstract":[{"lang":"eng","text":"Eukaryotic cell function depends on the physical separation of nucleoplasmic and cytoplasmic components by the nuclear envelope (NE). Molecular communication between the two compartments involves active, signal-mediated trafficking, a function that is exclusively performed by nuclear pore complexes (NPCs). The individual NPC components and the mechanisms that are involved in nuclear trafficking are well documented and have become textbook knowledge. However, in addition to their roles as nuclear gatekeepers, NPC components-nucleoporins-have been shown to have critical roles in chromatin organization and gene regulation. These findings have sparked new enthusiasm to study the roles of this multiprotein complex in nuclear organization and explore novel functions that in some cases appear to go beyond a role in transport. Here, we discuss our present view of NPC biogenesis, which is tightly linked to proper cell cycle progression and cell differentiation. In addition, we summarize new data suggesting that NPCs represent dynamic hubs for the integration of gene regulation and nuclear transport processes."}],"user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","_id":"11100","intvolume":" 75","title":"Nuclear pore complexes: Guardians of the nuclear genome","status":"public","oa_version":"None","scopus_import":"1","keyword":["Genetics","Molecular Biology","Biochemistry"],"article_processing_charge":"No","day":"18","citation":{"chicago":"Capelson, M., C. Doucet, and Martin Hetzer. “Nuclear Pore Complexes: Guardians of the Nuclear Genome.” Cold Spring Harbor Symposia on Quantitative Biology. Cold Spring Harbor Laboratory Press, 2011. https://doi.org/10.1101/sqb.2010.75.059.","mla":"Capelson, M., et al. “Nuclear Pore Complexes: Guardians of the Nuclear Genome.” Cold Spring Harbor Symposia on Quantitative Biology, vol. 75, Cold Spring Harbor Laboratory Press, 2011, pp. 585–97, doi:10.1101/sqb.2010.75.059.","short":"M. Capelson, C. Doucet, M. Hetzer, Cold Spring Harbor Symposia on Quantitative Biology 75 (2011) 585–597.","ista":"Capelson M, Doucet C, Hetzer M. 2011. Nuclear pore complexes: Guardians of the nuclear genome. Cold Spring Harbor Symposia on Quantitative Biology. 75, 585–597.","ieee":"M. Capelson, C. Doucet, and M. Hetzer, “Nuclear pore complexes: Guardians of the nuclear genome,” Cold Spring Harbor Symposia on Quantitative Biology, vol. 75. Cold Spring Harbor Laboratory Press, pp. 585–597, 2011.","apa":"Capelson, M., Doucet, C., & Hetzer, M. (2011). Nuclear pore complexes: Guardians of the nuclear genome. Cold Spring Harbor Symposia on Quantitative Biology. Cold Spring Harbor Laboratory Press. https://doi.org/10.1101/sqb.2010.75.059","ama":"Capelson M, Doucet C, Hetzer M. Nuclear pore complexes: Guardians of the nuclear genome. Cold Spring Harbor Symposia on Quantitative Biology. 2011;75:585-597. doi:10.1101/sqb.2010.75.059"},"publication":"Cold Spring Harbor Symposia on Quantitative Biology","page":"585-597","article_type":"original","date_published":"2011-04-18T00:00:00Z","extern":"1","pmid":1,"year":"2011","publisher":"Cold Spring Harbor Laboratory Press","publication_status":"published","author":[{"last_name":"Capelson","first_name":"M.","full_name":"Capelson, M."},{"first_name":"C.","last_name":"Doucet","full_name":"Doucet, C."},{"full_name":"HETZER, Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","orcid":"0000-0002-2111-992X","first_name":"Martin W","last_name":"HETZER"}],"volume":75,"date_created":"2022-04-07T07:53:18Z","date_updated":"2022-07-18T08:54:23Z","publication_identifier":{"issn":["0091-7451","1943-4456"],"isbn":["9781936113071"]},"month":"04","external_id":{"pmid":["21502404"]},"quality_controlled":"1","doi":"10.1101/sqb.2010.75.059","language":[{"iso":"eng"}]},{"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","_id":"112","intvolume":" 83","status":"public","title":"Droplet and cluster formation in freely falling granular streams","oa_version":"Preprint","type":"journal_article","issue":"5","abstract":[{"lang":"eng","text":"Particle beams are important tools for probing atomic and molecular interactions. Here we demonstrate that particle beams also offer a unique opportunity to investigate interactions in macroscopic systems, such as granular media. Motivated by recent experiments on streams of grains that exhibit liquid-like breakup into droplets, we use molecular dynamics simulations to investigate the evolution of a dense stream of macroscopic spheres accelerating out of an opening at the bottom of a reservoir. We show how nanoscale details associated with energy dissipation during collisions modify the stream\\'s macroscopic behavior. We find that inelastic collisions collimate the stream, while the presence of short-range attractive interactions drives structure formation. Parameterizing the collision dynamics by the coefficient of restitution (i.e., the ratio of relative velocities before and after impact) and the strength of the cohesive interaction, we map out a spectrum of behaviors that ranges from gaslike jets in which all grains drift apart to liquid-like streams that break into large droplets containing hundreds of grains. We also find a new, intermediate regime in which small aggregates form by capture from the gas phase, similar to what can be observed in molecular beams. Our results show that nearly all aspects of stream behavior are closely related to the velocity gradient associated with vertical free fall. Led by this observation, we propose a simple energy balance model to explain the droplet formation process. The qualitative as well as many quantitative features of the simulations and the model compare well with available experimental data and provide a first quantitative measure of the role of attractions in freely cooling granular streams."}],"citation":{"ama":"Waitukaitis SR, Grütjen H, Royer J, Jaeger H. Droplet and cluster formation in freely falling granular streams. Physical Review E. 2011;83(5). doi:10.1103/PhysRevE.83.051302","ista":"Waitukaitis SR, Grütjen H, Royer J, Jaeger H. 2011. Droplet and cluster formation in freely falling granular streams. Physical Review E. 83(5), 051302.","ieee":"S. R. Waitukaitis, H. Grütjen, J. Royer, and H. Jaeger, “Droplet and cluster formation in freely falling granular streams,” Physical Review E, vol. 83, no. 5. American Physical Society, 2011.","apa":"Waitukaitis, S. R., Grütjen, H., Royer, J., & Jaeger, H. (2011). Droplet and cluster formation in freely falling granular streams. Physical Review E. American Physical Society. https://doi.org/10.1103/PhysRevE.83.051302","mla":"Waitukaitis, Scott R., et al. “Droplet and Cluster Formation in Freely Falling Granular Streams.” Physical Review E, vol. 83, no. 5, 051302, American Physical Society, 2011, doi:10.1103/PhysRevE.83.051302.","short":"S.R. Waitukaitis, H. Grütjen, J. Royer, H. Jaeger, Physical Review E 83 (2011).","chicago":"Waitukaitis, Scott R, Helge Grütjen, John Royer, and Heinrich Jaeger. “Droplet and Cluster Formation in Freely Falling Granular Streams.” Physical Review E. American Physical Society, 2011. https://doi.org/10.1103/PhysRevE.83.051302."},"publication":"Physical Review E","date_published":"2011-05-12T00:00:00Z","day":"12","year":"2011","acknowledgement":"This work was supported by the NSF through CBET-0933242. We acknowledge use of shared facilities provided by the Keck Facility for Ultrafast Imaging at the University of Chicago and by the Chicago MRSEC through NSF DMR-0820054. Software support by Itasca Consulting Group, Inc., under the Itasca Educational Partnership is gratefully acknowledged. H.G. thanks the German-American Fulbright Commission for fellowship support during his stay at the University of Chicago.","publisher":"American Physical Society","publication_status":"published","author":[{"last_name":"Waitukaitis","first_name":"Scott R","orcid":"0000-0002-2299-3176","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","full_name":"Waitukaitis, Scott R"},{"full_name":"Grütjen, Helge","last_name":"Grütjen","first_name":"Helge"},{"full_name":"Royer, John","last_name":"Royer","first_name":"John"},{"first_name":"Heinrich","last_name":"Jaeger","full_name":"Jaeger, Heinrich"}],"volume":83,"date_updated":"2021-01-12T06:48:25Z","date_created":"2018-12-11T11:44:41Z","article_number":"051302","publist_id":"7942","extern":"1","oa":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1006.1371"}],"external_id":{"arxiv":["1006.1371"]},"quality_controlled":"1","doi":"10.1103/PhysRevE.83.051302","language":[{"iso":"eng"}],"month":"05"},{"publication_identifier":{"issn":["1559-1131"],"eissn":["1559-114X"]},"month":"07","doi":"10.1145/1993053.1993057","language":[{"iso":"eng"}],"quality_controlled":"1","extern":"1","article_number":"15","author":[{"first_name":"Eda","last_name":"Baykan","full_name":"Baykan, Eda"},{"first_name":"Monika H","last_name":"Henzinger","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","orcid":"0000-0002-5008-6530","full_name":"Henzinger, Monika H"},{"last_name":"Marian","first_name":"Ludmila","full_name":"Marian, Ludmila"},{"first_name":"Ingmar","last_name":"Weber","full_name":"Weber, Ingmar"}],"volume":5,"date_created":"2022-07-27T13:48:11Z","date_updated":"2022-09-12T08:46:56Z","year":"2011","publisher":"Association for Computing Machinery","publication_status":"published","article_processing_charge":"No","day":"01","scopus_import":"1","keyword":["Topic classification","URL","ODP"],"date_published":"2011-07-01T00:00:00Z","citation":{"apa":"Baykan, E., Henzinger, M. H., Marian, L., & Weber, I. (2011). A comprehensive study of features and algorithms for URL-based topic classification. ACM Transactions on the Web. Association for Computing Machinery. https://doi.org/10.1145/1993053.1993057","ieee":"E. Baykan, M. H. Henzinger, L. Marian, and I. Weber, “A comprehensive study of features and algorithms for URL-based topic classification,” ACM Transactions on the Web, vol. 5, no. 3. Association for Computing Machinery, 2011.","ista":"Baykan E, Henzinger MH, Marian L, Weber I. 2011. A comprehensive study of features and algorithms for URL-based topic classification. ACM Transactions on the Web. 5(3), 15.","ama":"Baykan E, Henzinger MH, Marian L, Weber I. A comprehensive study of features and algorithms for URL-based topic classification. ACM Transactions on the Web. 2011;5(3). doi:10.1145/1993053.1993057","chicago":"Baykan, Eda, Monika H Henzinger, Ludmila Marian, and Ingmar Weber. “A Comprehensive Study of Features and Algorithms for URL-Based Topic Classification.” ACM Transactions on the Web. Association for Computing Machinery, 2011. https://doi.org/10.1145/1993053.1993057.","short":"E. Baykan, M.H. Henzinger, L. Marian, I. Weber, ACM Transactions on the Web 5 (2011).","mla":"Baykan, Eda, et al. “A Comprehensive Study of Features and Algorithms for URL-Based Topic Classification.” ACM Transactions on the Web, vol. 5, no. 3, 15, Association for Computing Machinery, 2011, doi:10.1145/1993053.1993057."},"publication":"ACM Transactions on the Web","article_type":"original","issue":"3","abstract":[{"lang":"eng","text":"Given only the URL of a Web page, can we identify its topic? We study this problem in detail by exploring a large number of different feature sets and algorithms on several datasets. We also show that the inherent overlap between topics and the sparsity of the information in URLs makes this a very challenging problem. Web page classification without a page’s content is desirable when the content is not available at all, when a classification is needed before obtaining the content, or when classification speed is of utmost importance. For our experiments we used five different corpora comprising a total of about 3 million (URL, classification) pairs. We evaluated several techniques for feature generation and classification algorithms. The individual binary classifiers were then combined via boosting into metabinary classifiers. We achieve typical F-measure values between 80 and 85, and a typical precision of around 86. The precision can be pushed further over 90 while maintaining a typical level of recall between 30 and 40."}],"type":"journal_article","oa_version":"None","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"11673","intvolume":" 5","status":"public","title":"A comprehensive study of features and algorithms for URL-based topic classification"},{"abstract":[{"text":"We study a novel load balancing problem that arises in web search engines. The problem is a combination of an offline assignment problem, where files need to be (copied and) assigned to machines, and an online load balancing problem, where requests ask for specific files and need to be assigned to a corresponding machine, whose load is increased\r\nby this. We present simple deterministic algorithms for this problem and exhibit an interesting trade-off between the available space to make file copies and the obtainable makespan. We also give non-trivial lower bounds for a large class of deterministic algorithms and present a randomized algorithm that beats these bounds with high probability.","lang":"eng"}],"issue":"4","extern":"1","type":"journal_article","author":[{"first_name":"Paul","last_name":"Dütting","full_name":"Dütting, Paul"},{"id":"540c9bbd-f2de-11ec-812d-d04a5be85630","orcid":"0000-0002-5008-6530","first_name":"Monika H","last_name":"Henzinger","full_name":"Henzinger, Monika H"},{"full_name":"Weber, Ingmar","first_name":"Ingmar","last_name":"Weber"}],"date_updated":"2022-09-12T09:38:05Z","date_created":"2022-08-08T11:33:03Z","oa_version":"None","volume":111,"year":"2011","_id":"11760","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Offline file assignments for online load balancing","status":"public","publication_status":"published","intvolume":" 111","publisher":"Elsevier","day":"15","month":"01","article_processing_charge":"No","publication_identifier":{"issn":["0020-0190"]},"scopus_import":"1","date_published":"2011-01-15T00:00:00Z","doi":"10.1016/j.ipl.2010.11.022","language":[{"iso":"eng"}],"publication":"Information Processing Letters","citation":{"ama":"Dütting P, Henzinger MH, Weber I. Offline file assignments for online load balancing. Information Processing Letters. 2011;111(4):178-183. doi:10.1016/j.ipl.2010.11.022","ista":"Dütting P, Henzinger MH, Weber I. 2011. Offline file assignments for online load balancing. Information Processing Letters. 111(4), 178–183.","apa":"Dütting, P., Henzinger, M. H., & Weber, I. (2011). Offline file assignments for online load balancing. Information Processing Letters. Elsevier. https://doi.org/10.1016/j.ipl.2010.11.022","ieee":"P. Dütting, M. H. Henzinger, and I. Weber, “Offline file assignments for online load balancing,” Information Processing Letters, vol. 111, no. 4. Elsevier, pp. 178–183, 2011.","mla":"Dütting, Paul, et al. “Offline File Assignments for Online Load Balancing.” Information Processing Letters, vol. 111, no. 4, Elsevier, 2011, pp. 178–83, doi:10.1016/j.ipl.2010.11.022.","short":"P. Dütting, M.H. Henzinger, I. Weber, Information Processing Letters 111 (2011) 178–183.","chicago":"Dütting, Paul, Monika H Henzinger, and Ingmar Weber. “Offline File Assignments for Online Load Balancing.” Information Processing Letters. Elsevier, 2011. https://doi.org/10.1016/j.ipl.2010.11.022."},"quality_controlled":"1","article_type":"original","page":"178-183"},{"abstract":[{"text":"The design of truthful auctions that approximate the optimal expected revenue is a central problem in algorithmic mechanism design. 30 years after Myerson’s characterization of Bayesian optimal auctions in single-parameter domains [8], characterizing but also providing efficient mechanisms for multi-parameter domains still remains a very important unsolved problem. Our work improves upon recent results in this area, introducing new techniques for tackling the problem, while also combining and extending recently introduced tools.\r\n\r\nIn particular we give the first approximation algorithms for Bayesian auctions with multiple heterogeneous items when bidders have additive valuations, budget constraints and general matroid feasibility constraints.","lang":"eng"}],"extern":"1","type":"conference","alternative_title":["LNCS"],"author":[{"full_name":"Henzinger, Monika H","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","orcid":"0000-0002-5008-6530","first_name":"Monika H","last_name":"Henzinger"},{"full_name":"Vidali, Angelina","last_name":"Vidali","first_name":"Angelina"}],"date_updated":"2023-02-13T11:32:41Z","date_created":"2022-08-11T11:51:39Z","volume":6942,"oa_version":"None","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"11796","year":"2011","publication_status":"published","status":"public","title":"Multi-parameter mechanism design under budget and matroid constraints","publisher":"Springer Nature","intvolume":" 6942","day":"01","month":"09","article_processing_charge":"No","publication_identifier":{"isbn":["9783642237188"],"issn":["1611-3349"]},"scopus_import":"1","conference":{"end_date":"2011-09-09","start_date":"2011-09-05","location":"Saarbrücken, Germany","name":"ESA: European Symposium on Algorithms"},"date_published":"2011-09-01T00:00:00Z","doi":"10.1007/978-3-642-23719-5_17","language":[{"iso":"eng"}],"publication":"19th Annual European Symposium on Algorithms","citation":{"short":"M.H. Henzinger, A. Vidali, in:, 19th Annual European Symposium on Algorithms, Springer Nature, 2011, pp. 192–202.","mla":"Henzinger, Monika H., and Angelina Vidali. “Multi-Parameter Mechanism Design under Budget and Matroid Constraints.” 19th Annual European Symposium on Algorithms, vol. 6942, Springer Nature, 2011, pp. 192–202, doi:10.1007/978-3-642-23719-5_17.","chicago":"Henzinger, Monika H, and Angelina Vidali. “Multi-Parameter Mechanism Design under Budget and Matroid Constraints.” In 19th Annual European Symposium on Algorithms, 6942:192–202. Springer Nature, 2011. https://doi.org/10.1007/978-3-642-23719-5_17.","ama":"Henzinger MH, Vidali A. Multi-parameter mechanism design under budget and matroid constraints. In: 19th Annual European Symposium on Algorithms. Vol 6942. Springer Nature; 2011:192–202. doi:10.1007/978-3-642-23719-5_17","ieee":"M. H. Henzinger and A. Vidali, “Multi-parameter mechanism design under budget and matroid constraints,” in 19th Annual European Symposium on Algorithms, Saarbrücken, Germany, 2011, vol. 6942, pp. 192–202.","apa":"Henzinger, M. H., & Vidali, A. (2011). Multi-parameter mechanism design under budget and matroid constraints. In 19th Annual European Symposium on Algorithms (Vol. 6942, pp. 192–202). Saarbrücken, Germany: Springer Nature. https://doi.org/10.1007/978-3-642-23719-5_17","ista":"Henzinger MH, Vidali A. 2011. Multi-parameter mechanism design under budget and matroid constraints. 19th Annual European Symposium on Algorithms. ESA: European Symposium on Algorithms, LNCS, vol. 6942, 192–202."},"quality_controlled":"1","page":"192–202"},{"scopus_import":"1","article_processing_charge":"No","publication_identifier":{"isbn":["978-145030632-4"]},"month":"04","day":"01","page":"127 - 136","quality_controlled":"1","citation":{"chicago":"Dütting, Paul, Monika H Henzinger, and Ingmar Weber. “An Expressive Mechanism for Auctions on the Web.” In Proceedings of the 20th International Conference on World Wide Web, 127–36. Association for Computing Machinery, 2011. https://doi.org/10.1145/1963405.1963427.","short":"P. Dütting, M.H. Henzinger, I. Weber, in:, Proceedings of the 20th International Conference on World Wide Web, Association for Computing Machinery, 2011, pp. 127–136.","mla":"Dütting, Paul, et al. “An Expressive Mechanism for Auctions on the Web.” Proceedings of the 20th International Conference on World Wide Web, Association for Computing Machinery, 2011, pp. 127–36, doi:10.1145/1963405.1963427.","ieee":"P. Dütting, M. H. Henzinger, and I. Weber, “An expressive mechanism for auctions on the web,” in Proceedings of the 20th international conference on World wide web, Hyderabad, India, 2011, pp. 127–136.","apa":"Dütting, P., Henzinger, M. H., & Weber, I. (2011). An expressive mechanism for auctions on the web. In Proceedings of the 20th international conference on World wide web (pp. 127–136). Hyderabad, India: Association for Computing Machinery. https://doi.org/10.1145/1963405.1963427","ista":"Dütting P, Henzinger MH, Weber I. 2011. An expressive mechanism for auctions on the web. Proceedings of the 20th international conference on World wide web. WWW: International Conference on World Wide Web, 127–136.","ama":"Dütting P, Henzinger MH, Weber I. An expressive mechanism for auctions on the web. In: Proceedings of the 20th International Conference on World Wide Web. Association for Computing Machinery; 2011:127-136. doi:10.1145/1963405.1963427"},"publication":"Proceedings of the 20th international conference on World wide web","language":[{"iso":"eng"}],"doi":"10.1145/1963405.1963427","date_published":"2011-04-01T00:00:00Z","conference":{"name":"WWW: International Conference on World Wide Web","start_date":"2011-03-28","location":"Hyderabad, India","end_date":"2011-04-01"},"type":"conference","extern":"1","abstract":[{"text":"Auctions are widely used on the Web. Applications range from internet advertising to platforms such as eBay. In most of these applications the auctions in use are single/multi-item auctions with unit demand. The main drawback of standard mechanisms for this type of auctions, such as VCG and GSP, is the limited expressiveness that they offer to the bidders. The General Auction Mechanism (GAM) of [1] is taking a first step towards addressing the problem of limited expressiveness by computing a bidder optimal, envy free outcome for linear utility functions with identical slopes and a single discontinuity per bidder-item pair. We show that in many practical situations this does not suffice to adequately model the preferences of the bidders, and we overcome this problem by presenting the first mechanism for piece-wise linear utility functions with non-identical slopes and multiple discontinuities. Our mechanism runs in polynomial time. Like GAM it is incentive compatible for inputs that fulfill a certain non-degeneracy requirement, but our requirement is more general than the requirement of GAM. For discontinuous utility functions that are non-degenerate as well as for continuous utility functions the outcome of our mechanism is a competitive equilibrium. We also show how our mechanism can be used to compute approximately bidder optimal, envy free outcomes for a general class of continuous utility functions via piece-wise linear approximation. Finally, we prove hardness results for even more expressive settings.","lang":"eng"}],"publisher":"Association for Computing Machinery","status":"public","title":"An expressive mechanism for auctions on the web","publication_status":"published","_id":"11864","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2011","oa_version":"None","date_updated":"2023-02-17T10:21:18Z","date_created":"2022-08-16T09:05:34Z","author":[{"first_name":"Paul","last_name":"Dütting","full_name":"Dütting, Paul"},{"full_name":"Henzinger, Monika H","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","orcid":"0000-0002-5008-6530","first_name":"Monika H","last_name":"Henzinger"},{"first_name":"Ingmar","last_name":"Weber","full_name":"Weber, Ingmar"}]},{"abstract":[{"lang":"eng","text":"Temperature data from three Automatic Weather Stations and twelve Temperature Loggers are used to investigate the spatiotemporal variability of temperature over a glacier, its main atmospheric controls, the suitability of extrapolation techniques and their effect on melt modeling. We use data collected on Juncal Norte Glacier, central Chile, during one ablation season. We examine temporal and spatial variability in lapse rates (LRs), together with alternative statistical interpolation methods. The main control over the glacier thermal regime is the development of a katabatic boundary layer (KBL). Katabatic wind occurs at night and in the morning and is eroded in the afternoon. LRs reveal strong diurnal variability, with steeper LRs during the day when the katabatic wind weakens and shallower LRs during the night and morning. We suggest that temporally variable LRs should be used to account for the observed change. They tend to be steeper than equivalent constant LRs, and therefore result in a reduction in simulated melt compared to use of constant LRs when extrapolating from lower to higher elevations. In addition to the temporal variability, the temperature-elevation relationship varies also in space. Differences are evident between local LRs and including such variability in melt modeling affects melt simulations. Extrapolation methods based on the spatial variability of the observations after removal of the elevation trend, such as Inverse Distance Weighting or Kriging, do not seem necessary for simulations of gridded temperature data over a glacier."}],"issue":"D23","type":"journal_article","oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12651","status":"public","title":"Spatial and temporal variability of air temperature on a melting glacier: Atmospheric controls, extrapolation methods and their effect on melt modeling, Juncal Norte Glacier, Chile","intvolume":" 116","day":"16","article_processing_charge":"No","scopus_import":"1","keyword":["Paleontology","Space and Planetary Science","Earth and Planetary Sciences (miscellaneous)","Atmospheric Science","Earth-Surface Processes","Geochemistry and Petrology","Soil Science","Water Science and Technology","Ecology","Aquatic Science","Forestry","Oceanography","Geophysics"],"date_published":"2011-12-16T00:00:00Z","publication":"Journal of Geophysical Research: Atmospheres","citation":{"chicago":"Petersen, L., and Francesca Pellicciotti. “Spatial and Temporal Variability of Air Temperature on a Melting Glacier: Atmospheric Controls, Extrapolation Methods and Their Effect on Melt Modeling, Juncal Norte Glacier, Chile.” Journal of Geophysical Research: Atmospheres. American Geophysical Union, 2011. https://doi.org/10.1029/2011jd015842.","short":"L. Petersen, F. Pellicciotti, Journal of Geophysical Research: Atmospheres 116 (2011).","mla":"Petersen, L., and Francesca Pellicciotti. “Spatial and Temporal Variability of Air Temperature on a Melting Glacier: Atmospheric Controls, Extrapolation Methods and Their Effect on Melt Modeling, Juncal Norte Glacier, Chile.” Journal of Geophysical Research: Atmospheres, vol. 116, no. D23, D23109, American Geophysical Union, 2011, doi:10.1029/2011jd015842.","apa":"Petersen, L., & Pellicciotti, F. (2011). Spatial and temporal variability of air temperature on a melting glacier: Atmospheric controls, extrapolation methods and their effect on melt modeling, Juncal Norte Glacier, Chile. Journal of Geophysical Research: Atmospheres. American Geophysical Union. https://doi.org/10.1029/2011jd015842","ieee":"L. Petersen and F. Pellicciotti, “Spatial and temporal variability of air temperature on a melting glacier: Atmospheric controls, extrapolation methods and their effect on melt modeling, Juncal Norte Glacier, Chile,” Journal of Geophysical Research: Atmospheres, vol. 116, no. D23. American Geophysical Union, 2011.","ista":"Petersen L, Pellicciotti F. 2011. Spatial and temporal variability of air temperature on a melting glacier: Atmospheric controls, extrapolation methods and their effect on melt modeling, Juncal Norte Glacier, Chile. Journal of Geophysical Research: Atmospheres. 116(D23), D23109.","ama":"Petersen L, Pellicciotti F. Spatial and temporal variability of air temperature on a melting glacier: Atmospheric controls, extrapolation methods and their effect on melt modeling, Juncal Norte Glacier, Chile. Journal of Geophysical Research: Atmospheres. 2011;116(D23). doi:10.1029/2011jd015842"},"article_type":"original","extern":"1","article_number":"D23109","author":[{"full_name":"Petersen, L.","last_name":"Petersen","first_name":"L."},{"full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","last_name":"Pellicciotti","first_name":"Francesca"}],"date_created":"2023-02-20T08:18:14Z","date_updated":"2023-02-20T10:29:44Z","volume":116,"year":"2011","publication_status":"published","publisher":"American Geophysical Union","month":"12","publication_identifier":{"issn":["0148-0227"]},"doi":"10.1029/2011jd015842","language":[{"iso":"eng"}],"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1029/2011JD01584"}],"oa":1,"quality_controlled":"1"},{"day":"01","article_processing_charge":"No","scopus_import":"1","date_published":"2011-07-01T00:00:00Z","publication":"Water Resources Research","citation":{"ieee":"D. Finger, F. Pellicciotti, M. Konz, S. Rimkus, and P. Burlando, “The value of glacier mass balance, satellite snow cover images, and hourly discharge for improving the performance of a physically based distributed hydrological model,” Water Resources Research, vol. 47, no. 7. American Geophysical Union, 2011.","apa":"Finger, D., Pellicciotti, F., Konz, M., Rimkus, S., & Burlando, P. (2011). The value of glacier mass balance, satellite snow cover images, and hourly discharge for improving the performance of a physically based distributed hydrological model. Water Resources Research. American Geophysical Union. https://doi.org/10.1029/2010wr009824","ista":"Finger D, Pellicciotti F, Konz M, Rimkus S, Burlando P. 2011. The value of glacier mass balance, satellite snow cover images, and hourly discharge for improving the performance of a physically based distributed hydrological model. Water Resources Research. 47(7), W07519.","ama":"Finger D, Pellicciotti F, Konz M, Rimkus S, Burlando P. The value of glacier mass balance, satellite snow cover images, and hourly discharge for improving the performance of a physically based distributed hydrological model. Water Resources Research. 2011;47(7). doi:10.1029/2010wr009824","chicago":"Finger, David, Francesca Pellicciotti, Markus Konz, Stefan Rimkus, and Paolo Burlando. “The Value of Glacier Mass Balance, Satellite Snow Cover Images, and Hourly Discharge for Improving the Performance of a Physically Based Distributed Hydrological Model.” Water Resources Research. American Geophysical Union, 2011. https://doi.org/10.1029/2010wr009824.","short":"D. Finger, F. Pellicciotti, M. Konz, S. Rimkus, P. Burlando, Water Resources Research 47 (2011).","mla":"Finger, David, et al. “The Value of Glacier Mass Balance, Satellite Snow Cover Images, and Hourly Discharge for Improving the Performance of a Physically Based Distributed Hydrological Model.” Water Resources Research, vol. 47, no. 7, W07519, American Geophysical Union, 2011, doi:10.1029/2010wr009824."},"article_type":"original","abstract":[{"text":"Physically based hydrological models describe natural processes more accurately than conceptual models but require extensive data sets to produce accurate results. To identify the value of different data sets for improving the performance of the distributed hydrological model TOPKAPI we combine a multivariable validation technique with Monte Carlo simulations. The study is carried out in the snow and ice-dominated Rhonegletscher basin, as these types of mountainous basins are generally the most critical with respect to data availability and sensitivity to climate fluctuations. Each observational data set is used individually and in combination with the other data sets to determine a subset of best parameter combinations out of 10,000 Monte Carlos runs performed with randomly generated parameter sets. We validate model results against discharge, glacier mass balance, and satellite snow cover images for a 14 year time period (1994–2007). While the use of all data sets combined provides the best overall model performance (defined by the concurrent best agreement of simulated discharge, snow cover and mass balance with their respective measurements), the use of one or two variables for constraining the model results in poorer performance. Using only one data set for constraining the model glacier mass balance proved to be the most efficient observation leading to the best overall model performance. Our main result is that a combination of discharge and satellite snow cover images is best for improving model performance, since the volumetric information of discharge data and the spatial information of snow cover images are complementary.","lang":"eng"}],"issue":"7","type":"journal_article","oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12649","status":"public","title":"The value of glacier mass balance, satellite snow cover images, and hourly discharge for improving the performance of a physically based distributed hydrological model","intvolume":" 47","month":"07","publication_identifier":{"issn":["0043-1397"]},"doi":"10.1029/2010wr009824","language":[{"iso":"eng"}],"oa":1,"main_file_link":[{"url":"https://doi.org/10.1029/2010WR009824","open_access":"1"}],"quality_controlled":"1","extern":"1","article_number":"W07519","author":[{"full_name":"Finger, David","first_name":"David","last_name":"Finger"},{"last_name":"Pellicciotti","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca"},{"first_name":"Markus","last_name":"Konz","full_name":"Konz, Markus"},{"full_name":"Rimkus, Stefan","first_name":"Stefan","last_name":"Rimkus"},{"full_name":"Burlando, Paolo","last_name":"Burlando","first_name":"Paolo"}],"date_updated":"2023-02-20T10:39:57Z","date_created":"2023-02-20T08:18:03Z","volume":47,"year":"2011","publication_status":"published","publisher":"American Geophysical Union"},{"scopus_import":"1","article_processing_charge":"No","day":"01","citation":{"ista":"Pellicciotti F, Raschle T, Huerlimann T, Carenzo M, Burlando P. 2011. Transmission of solar radiation through clouds on melting glaciers: A comparison of parameterizations and their impact on melt modelling. Journal of Glaciology. 57(202), 367–381.","apa":"Pellicciotti, F., Raschle, T., Huerlimann, T., Carenzo, M., & Burlando, P. (2011). Transmission of solar radiation through clouds on melting glaciers: A comparison of parameterizations and their impact on melt modelling. Journal of Glaciology. Cambridge University Press. https://doi.org/10.3189/002214311796406013","ieee":"F. Pellicciotti, T. Raschle, T. Huerlimann, M. Carenzo, and P. Burlando, “Transmission of solar radiation through clouds on melting glaciers: A comparison of parameterizations and their impact on melt modelling,” Journal of Glaciology, vol. 57, no. 202. Cambridge University Press, pp. 367–381, 2011.","ama":"Pellicciotti F, Raschle T, Huerlimann T, Carenzo M, Burlando P. Transmission of solar radiation through clouds on melting glaciers: A comparison of parameterizations and their impact on melt modelling. Journal of Glaciology. 2011;57(202):367-381. doi:10.3189/002214311796406013","chicago":"Pellicciotti, Francesca, Thomas Raschle, Thomas Huerlimann, Marco Carenzo, and Paolo Burlando. “Transmission of Solar Radiation through Clouds on Melting Glaciers: A Comparison of Parameterizations and Their Impact on Melt Modelling.” Journal of Glaciology. Cambridge University Press, 2011. https://doi.org/10.3189/002214311796406013.","mla":"Pellicciotti, Francesca, et al. “Transmission of Solar Radiation through Clouds on Melting Glaciers: A Comparison of Parameterizations and Their Impact on Melt Modelling.” Journal of Glaciology, vol. 57, no. 202, Cambridge University Press, 2011, pp. 367–81, doi:10.3189/002214311796406013.","short":"F. Pellicciotti, T. Raschle, T. Huerlimann, M. Carenzo, P. Burlando, Journal of Glaciology 57 (2011) 367–381."},"publication":"Journal of Glaciology","page":"367-381","article_type":"original","date_published":"2011-03-01T00:00:00Z","type":"journal_article","issue":"202","abstract":[{"lang":"eng","text":"We explore the robustness and transferability of parameterizations of cloud radiative forcing used in glacier melt models at two sites in the Swiss Alps. We also look at the rationale behind some of the most commonly used approaches, and explore the relationship between cloud transmittance and several standard meteorological variables. The 2 m air-temperature diurnal range is the best predictor of variations in cloud transmittance. However, linear and exponential parameterizations can only explain 30–50% of the observed variance in computed cloud transmittance factors. We examine the impact of modelled cloud transmittance factors on both solar radiation and ablation rates computed with an enhanced temperature-index model. The melt model performance decreases when modelled radiation is used, the reduction being due to an underestimation of incoming solar radiation on clear-sky days. The model works well under overcast conditions. We also seek alternatives to the use of in situ ground data. However, outputs from an atmospheric model (2.2 km horizontal resolution) do not seem to provide an alternative to the parameterizations of cloud radiative forcing based on observations of air temperature at glacier automatic weather stations. Conversely, the correct definition of overcast conditions is important."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12652","intvolume":" 57","title":"Transmission of solar radiation through clouds on melting glaciers: A comparison of parameterizations and their impact on melt modelling","status":"public","oa_version":"Published Version","publication_identifier":{"issn":["0022-1430"],"eissn":["1727-5652"]},"month":"03","oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.3189/002214311796406013"}],"quality_controlled":"1","doi":"10.3189/002214311796406013","language":[{"iso":"eng"}],"extern":"1","year":"2011","publisher":"Cambridge University Press","publication_status":"published","author":[{"full_name":"Pellicciotti, Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","last_name":"Pellicciotti","first_name":"Francesca"},{"full_name":"Raschle, Thomas","last_name":"Raschle","first_name":"Thomas"},{"full_name":"Huerlimann, Thomas","first_name":"Thomas","last_name":"Huerlimann"},{"first_name":"Marco","last_name":"Carenzo","full_name":"Carenzo, Marco"},{"full_name":"Burlando, Paolo","first_name":"Paolo","last_name":"Burlando"}],"volume":57,"date_updated":"2023-02-20T09:47:00Z","date_created":"2023-02-20T08:18:21Z"},{"edition":"1","author":[{"last_name":"Molnar","first_name":"Peter","full_name":"Molnar, Peter"},{"first_name":"Paolo","last_name":"Burlando","full_name":"Burlando, Paolo"},{"id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","last_name":"Pellicciotti","first_name":"Francesca","full_name":"Pellicciotti, Francesca"}],"oa_version":"None","date_created":"2023-02-20T08:18:07Z","date_updated":"2023-02-20T10:35:28Z","_id":"12650","year":"2011","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","editor":[{"last_name":"Singh","first_name":"Vijay","full_name":"Singh, Vijay"},{"full_name":"Singh, Pratap","first_name":"Pratap","last_name":"Singh"},{"first_name":"Umesh","last_name":"Haritashya","full_name":"Haritashya, Umesh"}],"publisher":"Springer Nature","status":"public","publication_status":"published","title":"Streamflow Trends in Mountainous Regions","abstract":[{"text":"Streamflow is a hydrological variable measured at a defined river cross-section; it spatially integrates the runoff generating processes in the contributing watershed, including precipitation and air temperature. Trends in streamflow are progressive changes in the time series of streamflow that can be detected with statistical methods and their statistical significance can be assessed. Mountainous regions are particularly vulnerable to streamflow change because of their high specific runoff and the sensitivity to the distribution of precipitation and air temperature, and the processes of snow accumulation and melt.","lang":"eng"}],"extern":"1","type":"book_chapter","alternative_title":["Encyclopedia of Earth Sciences Series"],"place":"Dordrecht","doi":"10.1007/978-90-481-2642-2_543","date_published":"2011-07-01T00:00:00Z","language":[{"iso":"eng"}],"citation":{"ama":"Molnar P, Burlando P, Pellicciotti F. Streamflow Trends in Mountainous Regions. In: Singh V, Singh P, Haritashya U, eds. Encyclopedia of Snow, Ice and Glaciers. 1st ed. Dordrecht: Springer Nature; 2011:1084-1089. doi:10.1007/978-90-481-2642-2_543","apa":"Molnar, P., Burlando, P., & Pellicciotti, F. (2011). Streamflow Trends in Mountainous Regions. In V. Singh, P. Singh, & U. Haritashya (Eds.), Encyclopedia of Snow, Ice and Glaciers (1st ed., pp. 1084–1089). Dordrecht: Springer Nature. https://doi.org/10.1007/978-90-481-2642-2_543","ieee":"P. Molnar, P. Burlando, and F. Pellicciotti, “Streamflow Trends in Mountainous Regions,” in Encyclopedia of Snow, Ice and Glaciers, 1st ed., V. Singh, P. Singh, and U. Haritashya, Eds. Dordrecht: Springer Nature, 2011, pp. 1084–1089.","ista":"Molnar P, Burlando P, Pellicciotti F. 2011.Streamflow Trends in Mountainous Regions. In: Encyclopedia of Snow, Ice and Glaciers. Encyclopedia of Earth Sciences Series, , 1084–1089.","short":"P. Molnar, P. Burlando, F. Pellicciotti, in:, V. Singh, P. Singh, U. Haritashya (Eds.), Encyclopedia of Snow, Ice and Glaciers, 1st ed., Springer Nature, Dordrecht, 2011, pp. 1084–1089.","mla":"Molnar, Peter, et al. “Streamflow Trends in Mountainous Regions.” Encyclopedia of Snow, Ice and Glaciers, edited by Vijay Singh et al., 1st ed., Springer Nature, 2011, pp. 1084–89, doi:10.1007/978-90-481-2642-2_543.","chicago":"Molnar, Peter, Paolo Burlando, and Francesca Pellicciotti. “Streamflow Trends in Mountainous Regions.” In Encyclopedia of Snow, Ice and Glaciers, edited by Vijay Singh, Pratap Singh, and Umesh Haritashya, 1st ed., 1084–89. Dordrecht: Springer Nature, 2011. https://doi.org/10.1007/978-90-481-2642-2_543."},"publication":"Encyclopedia of Snow, Ice and Glaciers","page":"1084-1089","quality_controlled":"1","publication_identifier":{"isbn":["978-90-481-2641-5"],"eissn":["1871-756X"],"eisbn":["978-90-481-2642-2"],"issn":["1388-4360"]},"article_processing_charge":"No","month":"07","day":"01","scopus_import":"1"},{"date_published":"2011-06-23T00:00:00Z","doi":"10.1016/j.neuron.2011.03.028","page":"1155 - 1164","quality_controlled":0,"citation":{"mla":"Eichner, Hubert, et al. “Internal Structure of the Fly Elementary Motion Detector.” Neuron, vol. 70, no. 6, Elsevier, 2011, pp. 1155–64, doi:10.1016/j.neuron.2011.03.028.","short":"H. Eichner, M.A. Jösch, B. Schnell, D. Reiff, A. Borst, Neuron 70 (2011) 1155–1164.","chicago":"Eichner, Hubert, Maximilian A Jösch, Bettina Schnell, Dierk Reiff, and Alexander Borst. “Internal Structure of the Fly Elementary Motion Detector.” Neuron. Elsevier, 2011. https://doi.org/10.1016/j.neuron.2011.03.028.","ama":"Eichner H, Jösch MA, Schnell B, Reiff D, Borst A. Internal structure of the fly elementary motion detector. Neuron. 2011;70(6):1155-1164. doi:10.1016/j.neuron.2011.03.028","ista":"Eichner H, Jösch MA, Schnell B, Reiff D, Borst A. 2011. Internal structure of the fly elementary motion detector. Neuron. 70(6), 1155–1164.","ieee":"H. Eichner, M. A. Jösch, B. Schnell, D. Reiff, and A. Borst, “Internal structure of the fly elementary motion detector,” Neuron, vol. 70, no. 6. Elsevier, pp. 1155–1164, 2011.","apa":"Eichner, H., Jösch, M. A., Schnell, B., Reiff, D., & Borst, A. (2011). Internal structure of the fly elementary motion detector. Neuron. Elsevier. https://doi.org/10.1016/j.neuron.2011.03.028"},"publication":"Neuron","day":"23","month":"06","volume":70,"date_updated":"2021-01-12T06:49:43Z","date_created":"2018-12-11T11:51:14Z","author":[{"full_name":"Eichner, Hubert","last_name":"Eichner","first_name":"Hubert"},{"last_name":"Jösch","first_name":"Maximilian A","orcid":"0000-0002-3937-1330","id":"2BD278E6-F248-11E8-B48F-1D18A9856A87","full_name":"Maximilian Jösch"},{"first_name":"Bettina","last_name":"Schnell","full_name":"Schnell, Bettina"},{"first_name":"Dierk","last_name":"Reiff","full_name":"Reiff, Dierk F"},{"full_name":"Borst, Alexander","last_name":"Borst","first_name":"Alexander"}],"publisher":"Elsevier","intvolume":" 70","title":"Internal structure of the fly elementary motion detector","status":"public","publication_status":"published","_id":"1299","year":"2011","extern":1,"issue":"6","publist_id":"5969","abstract":[{"text":"Recent experiments have shown that motion detection in Drosophila starts with splitting the visual input into two parallel channels encoding brightness increments (ON) or decrements (OFF). This suggests the existence of either two (ON-ON, OFF-OFF) or four (for all pairwise interactions) separate motion detectors. To decide between these possibilities, we stimulated flies using sequences of ON and OFF brightness pulses while recording from motion-sensitive tangential cells. We found direction-selective responses to sequences of same sign (ON-ON, OFF-OFF), but not of opposite sign (ON-OFF, OFF-ON), refuting the existence of four separate detectors. Based on further measurements, we propose a model that reproduces a variety of additional experimental data sets, including ones that were previously interpreted as support for four separate detectors. Our experiments and the derived model mark an important step in guiding further dissection of the fly motion detection circuit.","lang":"eng"}],"type":"journal_article"},{"publist_id":"5728","issue":"2","abstract":[{"text":"We propose a general conjecture for the mixed Hodge polynomial of the generic character varieties of representations of the fundamental group of a Riemann surface of genus g to GLn(C) with fixed generic semisimple conjugacy classes at k punctures. This conjecture generalizes the Cauchy identity for Macdonald polynomials and is a common generalization of two formulas that we prove in this paper. The first is a formula for the E-polynomial of these character varieties which we obtain using the character table of GLn(Fq). We use this formula to compute the Euler characteristic of character varieties. The second formula gives the Poincaré polynomial of certain associated quiver varieties which we obtain using the character table of gln(Fq). In the last main result we prove that the Poincaré polynomials of the quiver varieties equal certain multiplicities in the tensor product of irreducible characters of GLn(Fq). As a consequence we find a curious connection between Kac-Moody algebras associated with comet-shaped, and typically wild, quivers and the representation theory of GLn(Fq).","lang":"eng"}],"extern":1,"type":"journal_article","author":[{"full_name":"Tamas Hausel","last_name":"Hausel","first_name":"Tamas","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Emmanuel","last_name":"Letellier","full_name":"Letellier, Emmanuel"},{"first_name":"Fernando","last_name":"Rodríguez Villegas","full_name":"Rodríguez Villegas, Fernando"}],"volume":160,"date_created":"2018-12-11T11:52:11Z","date_updated":"2021-01-12T06:50:56Z","_id":"1467","year":"2011","acknowledgement":"Hausel’s work was supported by National Science Foundation grants DMS-0305505 and DMS-0604775, by an Alfred Sloan Fellowship, and by a Royal Society University Research Fellowship. Letellier’s work supported by Agence Nationale de la Recherche grant ANR-09-JCJC-0102-01.\nRodriguez-Villegas’s work supported by National Science Foundation grant DMS-0200605, by an FRA from the University of Texas at Austin, by EPSRC grant EP/G027110/1, by visiting fellowships at All Souls and Wadham Colleges in Oxford, and by a Research Scholarship from the Clay Mathematical Institute.","publisher":"Duke University Press","intvolume":" 160","status":"public","publication_status":"published","title":"Arithmetic harmonic analysis on character and quiver varieties","month":"01","day":"01","doi":"10.1215/00127094-1444258","date_published":"2011-01-01T00:00:00Z","oa":1,"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/0810.2076"}],"citation":{"ista":"Hausel T, Letellier E, Rodríguez Villegas F. 2011. Arithmetic harmonic analysis on character and quiver varieties. Duke Mathematical Journal. 160(2), 323–400.","apa":"Hausel, T., Letellier, E., & Rodríguez Villegas, F. (2011). Arithmetic harmonic analysis on character and quiver varieties. Duke Mathematical Journal. Duke University Press. https://doi.org/10.1215/00127094-1444258","ieee":"T. Hausel, E. Letellier, and F. Rodríguez Villegas, “Arithmetic harmonic analysis on character and quiver varieties,” Duke Mathematical Journal, vol. 160, no. 2. Duke University Press, pp. 323–400, 2011.","ama":"Hausel T, Letellier E, Rodríguez Villegas F. Arithmetic harmonic analysis on character and quiver varieties. Duke Mathematical Journal. 2011;160(2):323-400. doi:10.1215/00127094-1444258","chicago":"Hausel, Tamás, Emmanuel Letellier, and Fernando Rodríguez Villegas. “Arithmetic Harmonic Analysis on Character and Quiver Varieties.” Duke Mathematical Journal. Duke University Press, 2011. https://doi.org/10.1215/00127094-1444258.","mla":"Hausel, Tamás, et al. “Arithmetic Harmonic Analysis on Character and Quiver Varieties.” Duke Mathematical Journal, vol. 160, no. 2, Duke University Press, 2011, pp. 323–400, doi:10.1215/00127094-1444258.","short":"T. Hausel, E. Letellier, F. Rodríguez Villegas, Duke Mathematical Journal 160 (2011) 323–400."},"publication":"Duke Mathematical Journal","page":"323 - 400","quality_controlled":0},{"type":"journal_article","extern":1,"abstract":[{"text":"The emergence of differences in the arrangement of cells is the first step towards the establishment of many organs. Understanding this process is limited by the lack of systematic characterization of epithelial organisation. Here we apply network theory at the scale of individual cells to uncover patterns in cell-to-cell contacts that govern epithelial organisation. We provide an objective characterisation of epithelia using network representation, where cells are nodes and cell contacts are links. The features of individual cells, together with attributes of the cellular network, produce a defining signature that distinguishes epithelia from different organs, species, developmental stages and genetic conditions. The approach permits characterization, quantification and classification of normal and perturbed epithelia, and establishes a framework for understanding molecular mechanisms that underpin the architecture of complex tissues.","lang":"eng"}],"issue":"1","publist_id":"5405","status":"public","title":"Epithelial organisation revealed by a network of cellular contacts","publication_status":"published","intvolume":" 2","publisher":"Nature Publishing Group","year":"2011","_id":"1723","acknowledgement":"We acknowledge the MRC for funding, M.M.B. acknowledges Darwin College, EMBO YIP and Schlumberger Ltd for support. L.M.E. is funded by the Marie Curie and the EMBO fellowships. L.d.F.C. is grateful to FAPESP (05/00587-5) and CNPq (301303/06-1) for financial support. Part of this work was performed during a Visiting Scholarship to L.d.F.C. from St Catharine's College, University of Cambridge. J.B. is supported by the MRC (UK) and A.K. by a FEBS fellowship","date_created":"2018-12-11T11:53:40Z","date_updated":"2021-01-12T06:52:46Z","volume":2,"author":[{"full_name":"Escudero, Luis M","last_name":"Escudero","first_name":"Luis"},{"last_name":"Costa","first_name":"Luciano","full_name":"Costa, Luciano"},{"full_name":"Anna Kicheva","orcid":"0000-0003-4509-4998","id":"3959A2A0-F248-11E8-B48F-1D18A9856A87","last_name":"Kicheva","first_name":"Anna"},{"last_name":"Briscoe","first_name":"James","full_name":"Briscoe, James"},{"full_name":"Freeman, Matthew","last_name":"Freeman","first_name":"Matthew"},{"full_name":"Babu, Madan M","last_name":"Babu","first_name":"Madan"}],"day":"01","month":"01","quality_controlled":0,"publication":"Nature Communications","citation":{"short":"L. Escudero, L. Costa, A. Kicheva, J. Briscoe, M. Freeman, M. Babu, Nature Communications 2 (2011).","mla":"Escudero, Luis, et al. “Epithelial Organisation Revealed by a Network of Cellular Contacts.” Nature Communications, vol. 2, no. 1, Nature Publishing Group, 2011, doi:10.1038/ncomms1536.","chicago":"Escudero, Luis, Luciano Costa, Anna Kicheva, James Briscoe, Matthew Freeman, and Madan Babu. “Epithelial Organisation Revealed by a Network of Cellular Contacts.” Nature Communications. Nature Publishing Group, 2011. https://doi.org/10.1038/ncomms1536.","ama":"Escudero L, Costa L, Kicheva A, Briscoe J, Freeman M, Babu M. Epithelial organisation revealed by a network of cellular contacts. Nature Communications. 2011;2(1). doi:10.1038/ncomms1536","apa":"Escudero, L., Costa, L., Kicheva, A., Briscoe, J., Freeman, M., & Babu, M. (2011). Epithelial organisation revealed by a network of cellular contacts. Nature Communications. Nature Publishing Group. https://doi.org/10.1038/ncomms1536","ieee":"L. Escudero, L. Costa, A. Kicheva, J. Briscoe, M. Freeman, and M. Babu, “Epithelial organisation revealed by a network of cellular contacts,” Nature Communications, vol. 2, no. 1. Nature Publishing Group, 2011.","ista":"Escudero L, Costa L, Kicheva A, Briscoe J, Freeman M, Babu M. 2011. Epithelial organisation revealed by a network of cellular contacts. Nature Communications. 2(1)."},"doi":"10.1038/ncomms1536","date_published":"2011-01-01T00:00:00Z"},{"month":"03","day":"04","page":"1154 - 1159","quality_controlled":0,"citation":{"apa":"Wartlick, O., Mumcu, P., Kicheva, A., Bittig, T., Seum, C., Jülicher, F., & González Gaitán, M. (2011). Dynamics of Dpp signaling and proliferation control. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1200037","ieee":"O. Wartlick et al., “Dynamics of Dpp signaling and proliferation control,” Science, vol. 331, no. 6021. American Association for the Advancement of Science, pp. 1154–1159, 2011.","ista":"Wartlick O, Mumcu P, Kicheva A, Bittig T, Seum C, Jülicher F, González Gaitán M. 2011. Dynamics of Dpp signaling and proliferation control. Science. 331(6021), 1154–1159.","ama":"Wartlick O, Mumcu P, Kicheva A, et al. Dynamics of Dpp signaling and proliferation control. Science. 2011;331(6021):1154-1159. doi:10.1126/science.1200037","chicago":"Wartlick, Ortrud, Peer Mumcu, Anna Kicheva, Thomas Bittig, Carole Seum, Frank Jülicher, and Marcos González Gaitán. “Dynamics of Dpp Signaling and Proliferation Control.” Science. American Association for the Advancement of Science, 2011. https://doi.org/10.1126/science.1200037.","short":"O. Wartlick, P. Mumcu, A. Kicheva, T. Bittig, C. Seum, F. Jülicher, M. González Gaitán, Science 331 (2011) 1154–1159.","mla":"Wartlick, Ortrud, et al. “Dynamics of Dpp Signaling and Proliferation Control.” Science, vol. 331, no. 6021, American Association for the Advancement of Science, 2011, pp. 1154–59, doi:10.1126/science.1200037."},"publication":"Science","doi":"10.1126/science.1200037","date_published":"2011-03-04T00:00:00Z","type":"journal_article","extern":1,"publist_id":"5406","issue":"6021","abstract":[{"text":"Morphogens, such as Decapentaplegic (Dpp) in the fly imaginal discs, form graded concentration profiles that control patterning and growth of developing organs. In the imaginal discs, proliferative growth is homogeneous in space, posing the conundrum of how morphogen concentration gradients could control position-independent growth. To understand the mechanism of proliferation control by the Dpp gradient, we quantified Dpp concentration and signaling levels during wing disc growth. Both Dpp concentration and signaling gradients scale with tissue size during development. On average, cells divide when Dpp signaling levels have increased by 50%. Our observations are consistent with a growth control mechanism based on temporal changes of cellular morphogen signaling levels. For a scaling gradient, this mechanism generates position-independent growth rates.","lang":"eng"}],"intvolume":" 331","publisher":"American Association for the Advancement of Science","title":"Dynamics of Dpp signaling and proliferation control","publication_status":"published","status":"public","acknowledgement":"P.M., T.B., and F.J. were supported by the Max-Planck-Gesellschaft. O.W., A.K., C.S., and M.G.-G. were supported by Geneva University and by European Research Council advanced investigator grant (SARA), SystemsX (LipidX), Swiss National Science Foundation (SNF), National Centre of Competence in Research (NCCR) chemical biology and Frontiers in Genetics and R'equip grants","_id":"1724","year":"2011","volume":331,"date_updated":"2021-01-12T06:52:46Z","date_created":"2018-12-11T11:53:40Z","author":[{"full_name":"Wartlick, Ortrud","last_name":"Wartlick","first_name":"Ortrud"},{"full_name":"Mumcu, Peer","last_name":"Mumcu","first_name":"Peer"},{"orcid":"0000-0003-4509-4998","id":"3959A2A0-F248-11E8-B48F-1D18A9856A87","last_name":"Kicheva","first_name":"Anna","full_name":"Anna Kicheva"},{"full_name":"Bittig, Thomas","first_name":"Thomas","last_name":"Bittig"},{"full_name":"Seum, Carole","first_name":"Carole","last_name":"Seum"},{"last_name":"Jülicher","first_name":"Frank","full_name":"Jülicher, Frank"},{"first_name":"Marcos","last_name":"González Gaitán","full_name":"González-Gaitán, Marcos A"}]},{"extern":"1","publist_id":"5370","publisher":"American Chemical Society","publication_status":"published","acknowledgement":"This work was supported by the Agence Nationale de la Recherche (ANR) through the ACCESS and COHESION projects and by the European Commission through the Chemtronics program MEST-CT-2005-020513","year":"2011","volume":5,"date_updated":"2021-01-12T06:52:59Z","date_created":"2018-12-11T11:53:50Z","author":[{"last_name":"Mongillo","first_name":"Massimo","full_name":"Mongillo, Massimo"},{"full_name":"Spathis, Panayotis","first_name":"Panayotis","last_name":"Spathis"},{"full_name":"Katsaros, Georgios","last_name":"Katsaros","first_name":"Georgios","id":"38DB5788-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Gentile, Pascal","first_name":"Pascal","last_name":"Gentile"},{"full_name":"Sanquer, Marc","last_name":"Sanquer","first_name":"Marc"},{"full_name":"De Franceschi, Silvano","first_name":"Silvano","last_name":"De Franceschi"}],"month":"09","quality_controlled":"1","oa":1,"external_id":{"arxiv":["1110.5668"]},"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1110.5668"}],"language":[{"iso":"eng"}],"doi":"10.1021/nn202524j","type":"journal_article","issue":"9","abstract":[{"text":"We report on a technique enabling electrical control of the contact silicidation process in silicon nanowire devices. Undoped silicon nanowires were contacted by pairs of nickel electrodes and each contact was selectively silicided by means of the Joule effect. By a realtime monitoring of the nanowire electrical resistance during the contact silicidation process we were able to fabricate nickel-silicide/silicon/nickel- silicide devices with controlled silicon channel length down to 8 nm. ","lang":"eng"}],"intvolume":" 5","title":"Joule-assisted silicidation for short-channel silicon nanowire devices","status":"public","_id":"1754","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Preprint","day":"27","page":"7117 - 7123","citation":{"chicago":"Mongillo, Massimo, Panayotis Spathis, Georgios Katsaros, Pascal Gentile, Marc Sanquer, and Silvano De Franceschi. “Joule-Assisted Silicidation for Short-Channel Silicon Nanowire Devices.” ACS Nano. American Chemical Society, 2011. https://doi.org/10.1021/nn202524j.","mla":"Mongillo, Massimo, et al. “Joule-Assisted Silicidation for Short-Channel Silicon Nanowire Devices.” ACS Nano, vol. 5, no. 9, American Chemical Society, 2011, pp. 7117–23, doi:10.1021/nn202524j.","short":"M. Mongillo, P. Spathis, G. Katsaros, P. Gentile, M. Sanquer, S. De Franceschi, ACS Nano 5 (2011) 7117–7123.","ista":"Mongillo M, Spathis P, Katsaros G, Gentile P, Sanquer M, De Franceschi S. 2011. Joule-assisted silicidation for short-channel silicon nanowire devices. ACS Nano. 5(9), 7117–7123.","ieee":"M. Mongillo, P. Spathis, G. Katsaros, P. Gentile, M. Sanquer, and S. De Franceschi, “Joule-assisted silicidation for short-channel silicon nanowire devices,” ACS Nano, vol. 5, no. 9. American Chemical Society, pp. 7117–7123, 2011.","apa":"Mongillo, M., Spathis, P., Katsaros, G., Gentile, P., Sanquer, M., & De Franceschi, S. (2011). Joule-assisted silicidation for short-channel silicon nanowire devices. ACS Nano. American Chemical Society. https://doi.org/10.1021/nn202524j","ama":"Mongillo M, Spathis P, Katsaros G, Gentile P, Sanquer M, De Franceschi S. Joule-assisted silicidation for short-channel silicon nanowire devices. ACS Nano. 2011;5(9):7117-7123. doi:10.1021/nn202524j"},"publication":"ACS Nano","date_published":"2011-09-27T00:00:00Z"},{"publisher":"American Physical Society","intvolume":" 107","title":"Observation of spin-selective tunneling in sige nanocrystals","status":"public","publication_status":"published","_id":"1755","acknowledgement":"The work was supported by the Agence Nationale de la Recherche (through the ACCESS and COHESION projects), U.S. DOE Contract No. DE-FG02-08ER46482 (Yale), and the Nanosciences Foundation at Grenoble, France. G. K. acknowledges support from the Deutsche Forschungsgemeinschaft","year":"2011","volume":107,"date_updated":"2021-01-12T06:53:00Z","date_created":"2018-12-11T11:53:50Z","author":[{"last_name":"Katsaros","first_name":"Georgios","id":"38DB5788-F248-11E8-B48F-1D18A9856A87","full_name":"Georgios Katsaros"},{"first_name":"Vitaly","last_name":"Golovach","full_name":"Golovach, Vitaly N"},{"full_name":"Spathis, Panayotis N","first_name":"Panayotis","last_name":"Spathis"},{"full_name":"Ares, Natalia","last_name":"Ares","first_name":"Natalia"},{"full_name":"Stoffel, Mathieu","last_name":"Stoffel","first_name":"Mathieu"},{"full_name":"Fournel, Frank","first_name":"Frank","last_name":"Fournel"},{"last_name":"Schmidt","first_name":"Oliver","full_name":"Schmidt, Oliver G"},{"last_name":"Glazman","first_name":"Leonid","full_name":"Glazman, Leonid I"},{"first_name":"Silvano","last_name":"De Franceschi","full_name":"De Franceschi, Silvano"}],"type":"journal_article","extern":1,"issue":"24","publist_id":"5369","abstract":[{"text":"Spin-selective tunneling of holes in SiGe nanocrystals contacted by normal-metal leads is reported. The spin selectivity arises from an interplay of the orbital effect of the magnetic field with the strong spin-orbit interaction present in the valence band of the semiconductor. We demonstrate both experimentally and theoretically that spin-selective tunneling in semiconductor nanostructures can be achieved without the use of ferromagnetic contacts. The reported effect, which relies on mixing the light and heavy holes, should be observable in a broad class of quantum-dot systems formed in semiconductors with a degenerate valence band.","lang":"eng"}],"quality_controlled":0,"oa":1,"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1107.3919"}],"citation":{"ama":"Katsaros G, Golovach V, Spathis P, et al. Observation of spin-selective tunneling in sige nanocrystals. Physical Review Letters. 2011;107(24). doi:10.1103/PhysRevLett.107.246601","ieee":"G. Katsaros et al., “Observation of spin-selective tunneling in sige nanocrystals,” Physical Review Letters, vol. 107, no. 24. American Physical Society, 2011.","apa":"Katsaros, G., Golovach, V., Spathis, P., Ares, N., Stoffel, M., Fournel, F., … De Franceschi, S. (2011). Observation of spin-selective tunneling in sige nanocrystals. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.107.246601","ista":"Katsaros G, Golovach V, Spathis P, Ares N, Stoffel M, Fournel F, Schmidt O, Glazman L, De Franceschi S. 2011. Observation of spin-selective tunneling in sige nanocrystals. Physical Review Letters. 107(24).","short":"G. Katsaros, V. Golovach, P. Spathis, N. Ares, M. Stoffel, F. Fournel, O. Schmidt, L. Glazman, S. De Franceschi, Physical Review Letters 107 (2011).","mla":"Katsaros, Georgios, et al. “Observation of Spin-Selective Tunneling in Sige Nanocrystals.” Physical Review Letters, vol. 107, no. 24, American Physical Society, 2011, doi:10.1103/PhysRevLett.107.246601.","chicago":"Katsaros, Georgios, Vitaly Golovach, Panayotis Spathis, Natalia Ares, Mathieu Stoffel, Frank Fournel, Oliver Schmidt, Leonid Glazman, and Silvano De Franceschi. “Observation of Spin-Selective Tunneling in Sige Nanocrystals.” Physical Review Letters. American Physical Society, 2011. https://doi.org/10.1103/PhysRevLett.107.246601."},"publication":"Physical Review Letters","date_published":"2011-12-07T00:00:00Z","doi":"10.1103/PhysRevLett.107.246601","day":"07","month":"12"},{"intvolume":" 264","publisher":"IOP Publishing Ltd.","status":"public","title":"Correlation measurements of individual microwave photons emitted from a symmetric cavity","publication_status":"published","_id":"1776","acknowledgement":"Australian National University,Aust. Res. Counc. Cent. Excellence Quantum-Atom Opt.,Griffith University,Ian Potter Foundation,International Union of Pure and Applied Physics","year":"2011","volume":264,"date_created":"2018-12-11T11:53:57Z","date_updated":"2019-04-26T07:22:05Z","author":[{"full_name":"Bozyigit, Deniz","first_name":"Deniz","last_name":"Bozyigit"},{"first_name":"C","last_name":"Lang","full_name":"Lang, C"},{"last_name":"Steffen","first_name":"L.","full_name":"Steffen, L. Kraig"},{"last_name":"Fink","first_name":"Johannes M","orcid":"0000-0001-8112-028X","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","full_name":"Johannes Fink"},{"full_name":"Eichler, Christopher","first_name":"Christopher","last_name":"Eichler"},{"first_name":"Matthias","last_name":"Baur","full_name":"Baur, Matthias P"},{"first_name":"R","last_name":"Bianchetti","full_name":"Bianchetti, R"},{"last_name":"Leek","first_name":"Peter","full_name":"Leek, Peter J"},{"first_name":"Stefan","last_name":"Filipp","full_name":"Filipp, Stefan"},{"last_name":"Wallraff","first_name":"Andreas","full_name":"Wallraff, Andreas"},{"last_name":"Da Silva","first_name":"Marcus","full_name":"Da Silva, Marcus P"},{"full_name":"Blais, Alexandre","last_name":"Blais","first_name":"Alexandre"}],"alternative_title":["Journal of Physics: Conference Series"],"type":"conference","extern":1,"publist_id":"5339","issue":"1","abstract":[{"text":"Superconducting circuits have been successfully established as systems to prepare and investigate microwave light fields at the quantum level. In contrast to optical experiments where light is detected using photon counters, microwaves are usually measured with well developed linear amplifiers. This makes measurements of correlation functions - one of the important tools in optics - harder to achieve because they traditionally rely on photon counters and beam splitters. Here, we demonstrate a system where we can prepare on demand single microwave photons in a cavity and detect them at the two outputs of the cavity using linear amplifiers. Together with efficient data processing, this allows us to measure different observables of the cavity photons, including the first-order correlation function. Using these techniques we demonstrate cooling of a thermal background field in the cavity.","lang":"eng"}],"quality_controlled":0,"citation":{"chicago":"Bozyigit, Deniz, C Lang, L. Steffen, Johannes M Fink, Christopher Eichler, Matthias Baur, R Bianchetti, et al. “Correlation Measurements of Individual Microwave Photons Emitted from a Symmetric Cavity,” Vol. 264. IOP Publishing Ltd., 2011. https://doi.org/10.1088/1742-6596/264/1/012024.","mla":"Bozyigit, Deniz, et al. Correlation Measurements of Individual Microwave Photons Emitted from a Symmetric Cavity. Vol. 264, no. 1, IOP Publishing Ltd., 2011, doi:10.1088/1742-6596/264/1/012024.","short":"D. Bozyigit, C. Lang, L. Steffen, J.M. Fink, C. Eichler, M. Baur, R. Bianchetti, P. Leek, S. Filipp, A. Wallraff, M. Da Silva, A. Blais, in:, IOP Publishing Ltd., 2011.","ista":"Bozyigit D, Lang C, Steffen L, Fink JM, Eichler C, Baur M, Bianchetti R, Leek P, Filipp S, Wallraff A, Da Silva M, Blais A. 2011. Correlation measurements of individual microwave photons emitted from a symmetric cavity. International Conference on Atomic Physics, Journal of Physics: Conference Series, vol. 264.","apa":"Bozyigit, D., Lang, C., Steffen, L., Fink, J. M., Eichler, C., Baur, M., … Blais, A. (2011). Correlation measurements of individual microwave photons emitted from a symmetric cavity (Vol. 264). Presented at the International Conference on Atomic Physics, IOP Publishing Ltd. https://doi.org/10.1088/1742-6596/264/1/012024","ieee":"D. Bozyigit et al., “Correlation measurements of individual microwave photons emitted from a symmetric cavity,” presented at the International Conference on Atomic Physics, 2011, vol. 264, no. 1.","ama":"Bozyigit D, Lang C, Steffen L, et al. Correlation measurements of individual microwave photons emitted from a symmetric cavity. In: Vol 264. IOP Publishing Ltd.; 2011. doi:10.1088/1742-6596/264/1/012024"},"doi":"10.1088/1742-6596/264/1/012024","date_published":"2011-01-01T00:00:00Z","conference":{"name":"International Conference on Atomic Physics"},"month":"01","day":"01"},{"publication_status":"published","title":"Experimental state tomography of itinerant single microwave photons","status":"public","intvolume":" 106","publisher":"American Physical Society","_id":"1777","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","year":"2011","acknowledgement":"This work was supported by the European Research Council (ERC) through a Starting Grant and by ETHZ","date_created":"2018-12-11T11:53:57Z","date_updated":"2021-11-16T07:57:13Z","oa_version":"None","volume":106,"author":[{"full_name":"Eichler, Christopher","last_name":"Eichler","first_name":"Christopher"},{"full_name":"Bozyigit, Deniz","first_name":"Deniz","last_name":"Bozyigit"},{"full_name":"Lang, C","last_name":"Lang","first_name":"C"},{"full_name":"Steffen, L.","last_name":"Steffen","first_name":"L."},{"full_name":"Fink, Johannes M","last_name":"Fink","first_name":"Johannes M","orcid":"0000-0001-8112-028X","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Andreas","last_name":"Wallraff","full_name":"Wallraff, Andreas"}],"related_material":{"link":[{"url":"https://doi.org/10.1103/PhysRevLett.106.249901","relation":"erratum"}]},"type":"journal_article","extern":"1","abstract":[{"text":"A wide range of experiments studying microwave photons localized in superconducting cavities have made important contributions to our understanding of the quantum properties of radiation. Propagating microwave photons, however, have so far been studied much less intensely. Here we present measurements in which we reconstruct the quantum state of itinerant single photon Fock states and their superposition with the vacuum by analyzing moments of the measured amplitude distribution up to fourth order. Using linear amplifiers and quadrature amplitude detectors, we have developed efficient methods to separate the detected single photon signal from the noise added by the amplifier. From our measurement data we have also reconstructed the corresponding Wigner function.","lang":"eng"}],"publist_id":"5338","issue":"22","publication":"Physical Review Letters","oa":1,"citation":{"mla":"Eichler, Christopher, et al. “Experimental State Tomography of Itinerant Single Microwave Photons.” Physical Review Letters, vol. 106, no. 22, American Physical Society, 2011, doi:10.1103/PhysRevLett.106.220503.","short":"C. Eichler, D. Bozyigit, C. Lang, L. Steffen, J.M. Fink, A. Wallraff, Physical Review Letters 106 (2011).","chicago":"Eichler, Christopher, Deniz Bozyigit, C Lang, L. Steffen, Johannes M Fink, and Andreas Wallraff. “Experimental State Tomography of Itinerant Single Microwave Photons.” Physical Review Letters. American Physical Society, 2011. https://doi.org/10.1103/PhysRevLett.106.220503.","ama":"Eichler C, Bozyigit D, Lang C, Steffen L, Fink JM, Wallraff A. Experimental state tomography of itinerant single microwave photons. Physical Review Letters. 2011;106(22). doi:10.1103/PhysRevLett.106.220503","ista":"Eichler C, Bozyigit D, Lang C, Steffen L, Fink JM, Wallraff A. 2011. Experimental state tomography of itinerant single microwave photons. Physical Review Letters. 106(22).","apa":"Eichler, C., Bozyigit, D., Lang, C., Steffen, L., Fink, J. M., & Wallraff, A. (2011). Experimental state tomography of itinerant single microwave photons. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.106.220503","ieee":"C. Eichler, D. Bozyigit, C. Lang, L. Steffen, J. M. Fink, and A. Wallraff, “Experimental state tomography of itinerant single microwave photons,” Physical Review Letters, vol. 106, no. 22. American Physical Society, 2011."},"main_file_link":[{"url":"http://arxiv.org/abs/1011.6668","open_access":"1"}],"language":[{"iso":"eng"}],"date_published":"2011-06-01T00:00:00Z","doi":"10.1103/PhysRevLett.106.220503","day":"01","month":"06","article_processing_charge":"No"},{"month":"06","day":"15","citation":{"short":"C. Lang, D. Bozyigit, C. Eichler, L. Steffen, J.M. Fink, A. Abdumalikov, M. Baur, S. Filipp, M. Da Silva, A. Blais, A. Wallraff, Physical Review Letters 106 (2011).","mla":"Lang, C., et al. “Observation of Resonant Photon Blockade at Microwave Frequencies Using Correlation Function Measurements.” Physical Review Letters, vol. 106, no. 24, American Physical Society, 2011, doi:10.1103/PhysRevLett.106.243601.","chicago":"Lang, C, Deniz Bozyigit, Christopher Eichler, L. Steffen, Johannes M Fink, Abdufarrukh Abdumalikov, Matthias Baur, et al. “Observation of Resonant Photon Blockade at Microwave Frequencies Using Correlation Function Measurements.” Physical Review Letters. American Physical Society, 2011. https://doi.org/10.1103/PhysRevLett.106.243601.","ama":"Lang C, Bozyigit D, Eichler C, et al. Observation of resonant photon blockade at microwave frequencies using correlation function measurements. Physical Review Letters. 2011;106(24). doi:10.1103/PhysRevLett.106.243601","apa":"Lang, C., Bozyigit, D., Eichler, C., Steffen, L., Fink, J. M., Abdumalikov, A., … Wallraff, A. (2011). Observation of resonant photon blockade at microwave frequencies using correlation function measurements. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.106.243601","ieee":"C. Lang et al., “Observation of resonant photon blockade at microwave frequencies using correlation function measurements,” Physical Review Letters, vol. 106, no. 24. American Physical Society, 2011.","ista":"Lang C, Bozyigit D, Eichler C, Steffen L, Fink JM, Abdumalikov A, Baur M, Filipp S, Da Silva M, Blais A, Wallraff A. 2011. Observation of resonant photon blockade at microwave frequencies using correlation function measurements. Physical Review Letters. 106(24)."},"oa":1,"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1102.0461"}],"publication":"Physical Review Letters","quality_controlled":0,"date_published":"2011-06-15T00:00:00Z","doi":"10.1103/PhysRevLett.106.243601","type":"journal_article","publist_id":"5336","issue":"24","abstract":[{"lang":"eng","text":"Creating a train of single photons and monitoring its propagation and interaction is challenging in most physical systems, as photons generally interact very weakly with other systems. However, when confining microwave frequency photons in a transmission line resonator, effective photon-photon interactions can be mediated by qubits embedded in the resonator. Here, we observe the phenomenon of photon blockade through second-order correlation function measurements. The experiments clearly demonstrate antibunching in a continuously pumped source of single microwave photons measured by using microwave beam splitters, linear amplifiers, and quadrature amplitude detectors. We also investigate resonance fluorescence and Rayleigh scattering in Mollow-triplet-like spectra."}],"extern":1,"acknowledgement":"This work was supported by the European Research Council (ERC) through a Starting Grant and by ETHZ. M. P. d. S. was supported by NSERC. A. B. was supported by NSERC, CIFAR, and the Alfred P. Sloan Foundation","_id":"1778","year":"2011","intvolume":" 106","publisher":"American Physical Society","publication_status":"published","title":"Observation of resonant photon blockade at microwave frequencies using correlation function measurements","status":"public","author":[{"full_name":"Lang, C","last_name":"Lang","first_name":"C"},{"full_name":"Bozyigit, Deniz","first_name":"Deniz","last_name":"Bozyigit"},{"last_name":"Eichler","first_name":"Christopher","full_name":"Eichler, Christopher"},{"first_name":"L.","last_name":"Steffen","full_name":"Steffen, L. Kraig"},{"full_name":"Johannes Fink","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8112-028X","first_name":"Johannes M","last_name":"Fink"},{"last_name":"Abdumalikov","first_name":"Abdufarrukh","full_name":"Abdumalikov, Abdufarrukh A"},{"last_name":"Baur","first_name":"Matthias","full_name":"Baur, Matthias P"},{"first_name":"Stefan","last_name":"Filipp","full_name":"Filipp, Stefan"},{"full_name":"Da Silva, Marcus P","first_name":"Marcus","last_name":"Da Silva"},{"first_name":"Alexandre","last_name":"Blais","full_name":"Blais, Alexandre"},{"full_name":"Wallraff, Andreas","last_name":"Wallraff","first_name":"Andreas"}],"volume":106,"date_updated":"2021-01-12T06:53:08Z","date_created":"2018-12-11T11:53:57Z"},{"doi":"10.1038/nphys1845","date_published":"2011-02-01T00:00:00Z","quality_controlled":0,"page":"154 - 158","publication":"Nature Physics","citation":{"apa":"Bozyigit, D., Lang, C., Steffen, L., Fink, J. M., Eichler, C., Baur, M., … Wallraff, A. (2011). Antibunching of microwave-frequency photons observed in correlation measurements using linear detectors. Nature Physics. Nature Publishing Group. https://doi.org/10.1038/nphys1845","ieee":"D. Bozyigit et al., “Antibunching of microwave-frequency photons observed in correlation measurements using linear detectors,” Nature Physics, vol. 7, no. 2. Nature Publishing Group, pp. 154–158, 2011.","ista":"Bozyigit D, Lang C, Steffen L, Fink JM, Eichler C, Baur M, Bianchetti R, Leek P, Filipp S, Da Silva M, Blais A, Wallraff A. 2011. Antibunching of microwave-frequency photons observed in correlation measurements using linear detectors. Nature Physics. 7(2), 154–158.","ama":"Bozyigit D, Lang C, Steffen L, et al. Antibunching of microwave-frequency photons observed in correlation measurements using linear detectors. Nature Physics. 2011;7(2):154-158. doi:10.1038/nphys1845","chicago":"Bozyigit, Deniz, C Lang, L. Steffen, Johannes M Fink, Christopher Eichler, Matthias Baur, R Bianchetti, et al. “Antibunching of Microwave-Frequency Photons Observed in Correlation Measurements Using Linear Detectors.” Nature Physics. Nature Publishing Group, 2011. https://doi.org/10.1038/nphys1845.","short":"D. Bozyigit, C. Lang, L. Steffen, J.M. Fink, C. Eichler, M. Baur, R. Bianchetti, P. Leek, S. Filipp, M. Da Silva, A. Blais, A. Wallraff, Nature Physics 7 (2011) 154–158.","mla":"Bozyigit, Deniz, et al. “Antibunching of Microwave-Frequency Photons Observed in Correlation Measurements Using Linear Detectors.” Nature Physics, vol. 7, no. 2, Nature Publishing Group, 2011, pp. 154–58, doi:10.1038/nphys1845."},"day":"01","month":"02","date_created":"2018-12-11T11:53:57Z","date_updated":"2021-01-12T06:53:07Z","volume":7,"author":[{"last_name":"Bozyigit","first_name":"Deniz","full_name":"Bozyigit, Deniz"},{"full_name":"Lang, C","last_name":"Lang","first_name":"C"},{"last_name":"Steffen","first_name":"L.","full_name":"Steffen, L. Kraig"},{"full_name":"Johannes Fink","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8112-028X","first_name":"Johannes M","last_name":"Fink"},{"full_name":"Eichler, Christopher","last_name":"Eichler","first_name":"Christopher"},{"first_name":"Matthias","last_name":"Baur","full_name":"Baur, Matthias P"},{"full_name":"Bianchetti, R","last_name":"Bianchetti","first_name":"R"},{"full_name":"Leek, Peter J","last_name":"Leek","first_name":"Peter"},{"full_name":"Filipp, Stefan","last_name":"Filipp","first_name":"Stefan"},{"first_name":"Marcus","last_name":"Da Silva","full_name":"Da Silva, Marcus P"},{"last_name":"Blais","first_name":"Alexandre","full_name":"Blais, Alexandre"},{"first_name":"Andreas","last_name":"Wallraff","full_name":"Wallraff, Andreas"}],"status":"public","publication_status":"published","title":"Antibunching of microwave-frequency photons observed in correlation measurements using linear detectors","intvolume":" 7","publisher":"Nature Publishing Group","acknowledgement":"This work was supported by the European Research Council (ERC) through a Starting Grant and by ETHZ. M.P.d.S. was supported by a NSERC postdoctoral fellowship. A.B. was supported by NSERC, CIFAR and the Alfred P. Sloan Foundation","_id":"1775","year":"2011","extern":1,"abstract":[{"text":"At optical frequencies the radiation produced by a source, such as a laser, a black body or a single-photon emitter, is frequently characterized by analysing the temporal correlations of emitted photons using single-photon counters. At microwave frequencies, however, there are no efficient single-photon counters yet. Instead, well-developed linear amplifiers allow for efficient measurement of the amplitude of an electromagnetic field. Here, we demonstrate first- and second-order correlation function measurements of a pulsed microwave-frequency single-photon source integrated on the same chip with a 50/50 beam splitter followed by linear amplifiers and quadrature amplitude detectors. We clearly observe single-photon coherence in first-order and photon antibunching in second-order correlation function measurements of the propagating fields.","lang":"eng"}],"publist_id":"5340","issue":"2","type":"journal_article"},{"_id":"1781","year":"2011","acknowledgement":"This work was supported by the Swiss National Science Foundation (SNF), the Austrian Science Foundation (FWF), and ETH Zurich","title":"Multimode mediated qubit-qubit coupling and dark-state symmetries in circuit quantum electrodynamics","status":"public","publication_status":"published","intvolume":" 83","publisher":"American Physical Society","author":[{"full_name":"Filipp, Stefan","first_name":"Stefan","last_name":"Filipp"},{"full_name":"Göppl, M","first_name":"M","last_name":"Göppl"},{"full_name":"Johannes Fink","first_name":"Johannes M","last_name":"Fink","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8112-028X"},{"last_name":"Baur","first_name":"Matthias","full_name":"Baur, Matthias P"},{"full_name":"Bianchetti, R","first_name":"R","last_name":"Bianchetti"},{"full_name":"Steffen, L. Kraig","first_name":"L.","last_name":"Steffen"},{"first_name":"Andreas","last_name":"Wallraff","full_name":"Wallraff, Andreas"}],"date_created":"2018-12-11T11:53:58Z","date_updated":"2021-01-12T06:53:09Z","volume":83,"type":"journal_article","abstract":[{"text":"Microwave cavities with high quality factors enable coherent coupling of distant quantum systems. Virtual photons lead to a transverse interaction between qubits when they are nonresonant with the cavity but resonant with each other. We experimentally investigate the inverse scaling of the interqubit coupling with the detuning from a cavity mode and its proportionality to the qubit-cavity interaction strength. We demonstrate that the enhanced coupling at higher frequencies is mediated by multiple higher-harmonic cavity modes. Moreover, we observe dark states of the coupled qubit-qubit system and analyze their relation to the symmetry of the applied driving field at different frequencies.","lang":"eng"}],"issue":"6","publist_id":"5335","extern":1,"publication":"Physical Review A - Atomic, Molecular, and Optical Physics","citation":{"chicago":"Filipp, Stefan, M Göppl, Johannes M Fink, Matthias Baur, R Bianchetti, L. Steffen, and Andreas Wallraff. “Multimode Mediated Qubit-Qubit Coupling and Dark-State Symmetries in Circuit Quantum Electrodynamics.” Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society, 2011. https://doi.org/10.1103/PhysRevA.83.063827.","short":"S. Filipp, M. Göppl, J.M. Fink, M. Baur, R. Bianchetti, L. Steffen, A. Wallraff, Physical Review A - Atomic, Molecular, and Optical Physics 83 (2011).","mla":"Filipp, Stefan, et al. “Multimode Mediated Qubit-Qubit Coupling and Dark-State Symmetries in Circuit Quantum Electrodynamics.” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 83, no. 6, American Physical Society, 2011, doi:10.1103/PhysRevA.83.063827.","apa":"Filipp, S., Göppl, M., Fink, J. M., Baur, M., Bianchetti, R., Steffen, L., & Wallraff, A. (2011). Multimode mediated qubit-qubit coupling and dark-state symmetries in circuit quantum electrodynamics. Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society. https://doi.org/10.1103/PhysRevA.83.063827","ieee":"S. Filipp et al., “Multimode mediated qubit-qubit coupling and dark-state symmetries in circuit quantum electrodynamics,” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 83, no. 6. American Physical Society, 2011.","ista":"Filipp S, Göppl M, Fink JM, Baur M, Bianchetti R, Steffen L, Wallraff A. 2011. Multimode mediated qubit-qubit coupling and dark-state symmetries in circuit quantum electrodynamics. Physical Review A - Atomic, Molecular, and Optical Physics. 83(6).","ama":"Filipp S, Göppl M, Fink JM, et al. Multimode mediated qubit-qubit coupling and dark-state symmetries in circuit quantum electrodynamics. Physical Review A - Atomic, Molecular, and Optical Physics. 2011;83(6). doi:10.1103/PhysRevA.83.063827"},"quality_controlled":0,"doi":"10.1103/PhysRevA.83.063827","date_published":"2011-06-22T00:00:00Z","day":"22","month":"06"},{"author":[{"last_name":"Eichler","first_name":"Christopher","full_name":"Eichler, Christopher"},{"first_name":"Deniz","last_name":"Bozyigit","full_name":"Bozyigit, Deniz"},{"full_name":"Lang, C","last_name":"Lang","first_name":"C"},{"last_name":"Baur","first_name":"Matthias","full_name":"Baur, Matthias P"},{"last_name":"Steffen","first_name":"L.","full_name":"Steffen, L. Kraig"},{"full_name":"Johannes Fink","first_name":"Johannes M","last_name":"Fink","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8112-028X"},{"full_name":"Filipp, Stefan","last_name":"Filipp","first_name":"Stefan"},{"full_name":"Wallraff, Andreas","first_name":"Andreas","last_name":"Wallraff"}],"volume":107,"date_created":"2018-12-11T11:53:58Z","date_updated":"2021-01-12T06:53:09Z","acknowledgement":"This work was supported by the European Research Council (ERC) through a Starting grant and by ETHZ. S. F. acknowledges the Austrian Science Foundation (FWF) for support","_id":"1780","year":"2011","intvolume":" 107","publisher":"American Physical Society","title":"Observation of two-mode squeezing in the microwave frequency domain","publication_status":"published","status":"public","issue":"11","publist_id":"5334","abstract":[{"text":"Continuous variable entanglement between two modes of a radiation field is usually studied at optical frequencies. Here we demonstrate experiments that show the entanglement between microwave photons of different energy in a broadband squeezed beam. We use a Josephson parametric amplifier to generate the two-mode correlated state and detect all four quadrature components simultaneously in a two-channel heterodyne setup using amplitude detectors. Analyzing two-dimensional phase space histograms for all possible pairs of quadratures allows us to determine the full covariance matrix, which is in good agreement with the one expected for a two-mode squeezed state.","lang":"eng"}],"extern":1,"type":"journal_article","doi":"10.1103/PhysRevLett.107.113601","date_published":"2011-09-06T00:00:00Z","citation":{"ista":"Eichler C, Bozyigit D, Lang C, Baur M, Steffen L, Fink JM, Filipp S, Wallraff A. 2011. Observation of two-mode squeezing in the microwave frequency domain. Physical Review Letters. 107(11).","ieee":"C. Eichler et al., “Observation of two-mode squeezing in the microwave frequency domain,” Physical Review Letters, vol. 107, no. 11. American Physical Society, 2011.","apa":"Eichler, C., Bozyigit, D., Lang, C., Baur, M., Steffen, L., Fink, J. M., … Wallraff, A. (2011). Observation of two-mode squeezing in the microwave frequency domain. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.107.113601","ama":"Eichler C, Bozyigit D, Lang C, et al. Observation of two-mode squeezing in the microwave frequency domain. Physical Review Letters. 2011;107(11). doi:10.1103/PhysRevLett.107.113601","chicago":"Eichler, Christopher, Deniz Bozyigit, C Lang, Matthias Baur, L. Steffen, Johannes M Fink, Stefan Filipp, and Andreas Wallraff. “Observation of Two-Mode Squeezing in the Microwave Frequency Domain.” Physical Review Letters. American Physical Society, 2011. https://doi.org/10.1103/PhysRevLett.107.113601.","mla":"Eichler, Christopher, et al. “Observation of Two-Mode Squeezing in the Microwave Frequency Domain.” Physical Review Letters, vol. 107, no. 11, American Physical Society, 2011, doi:10.1103/PhysRevLett.107.113601.","short":"C. Eichler, D. Bozyigit, C. Lang, M. Baur, L. Steffen, J.M. Fink, S. Filipp, A. Wallraff, Physical Review Letters 107 (2011)."},"publication":"Physical Review Letters","quality_controlled":0,"day":"06","month":"09"},{"publication_status":"published","title":"Adaptive response and enlargement of dynamic range","status":"public","intvolume":" 8","publisher":"Arizona State University","year":"2011","_id":"1815","date_created":"2018-12-11T11:54:10Z","date_updated":"2021-01-12T06:53:23Z","volume":8,"author":[{"full_name":"Tamar Friedlander","id":"36A5845C-F248-11E8-B48F-1D18A9856A87","first_name":"Tamar","last_name":"Friedlander"},{"full_name":"Brenner, Naama","first_name":"Naama","last_name":"Brenner"}],"type":"journal_article","extern":1,"abstract":[{"text":"Many membrane channels and receptors exhibit adaptive, or desensitized, response to a strong sustained input stimulus, often supported by protein activity-dependent inactivation. Adaptive response is thought to be related to various cellular functions such as homeostasis and enlargement of dynamic range by background compensation. Here we study the quantitative relation between adaptive response and background compensation within a modeling framework. We show that any particular type of adaptive response is neither sufficient nor necessary for adaptive enlargement of dynamic range. In particular a precise adaptive response, where system activity is maintained at a constant level at steady state, does not ensure a large dynamic range neither in input signal nor in system output. A general mechanism for input dynamic range enlargement can come about from the activity-dependent modulation of protein responsiveness by multiple biochemical modification, regardless of the type of adaptive response it induces. Therefore hierarchical biochemical processes such as methylation and phosphorylation are natural candidates to induce this property in signaling systems.","lang":"eng"}],"issue":"2","publist_id":"5291","quality_controlled":0,"page":"515 - 526","publication":"Mathematical Biosciences and Engineering","main_file_link":[{"url":"http://arxiv.org/abs/1003.2791","open_access":"1"}],"citation":{"mla":"Friedlander, Tamar, and Naama Brenner. “Adaptive Response and Enlargement of Dynamic Range.” Mathematical Biosciences and Engineering, vol. 8, no. 2, Arizona State University, 2011, pp. 515–26, doi:10.3934/mbe.2011.8.515.","short":"T. Friedlander, N. Brenner, Mathematical Biosciences and Engineering 8 (2011) 515–526.","chicago":"Friedlander, Tamar, and Naama Brenner. “Adaptive Response and Enlargement of Dynamic Range.” Mathematical Biosciences and Engineering. Arizona State University, 2011. https://doi.org/10.3934/mbe.2011.8.515.","ama":"Friedlander T, Brenner N. Adaptive response and enlargement of dynamic range. Mathematical Biosciences and Engineering. 2011;8(2):515-526. doi:10.3934/mbe.2011.8.515","ista":"Friedlander T, Brenner N. 2011. Adaptive response and enlargement of dynamic range. Mathematical Biosciences and Engineering. 8(2), 515–526.","apa":"Friedlander, T., & Brenner, N. (2011). Adaptive response and enlargement of dynamic range. Mathematical Biosciences and Engineering. Arizona State University. https://doi.org/10.3934/mbe.2011.8.515","ieee":"T. Friedlander and N. Brenner, “Adaptive response and enlargement of dynamic range,” Mathematical Biosciences and Engineering, vol. 8, no. 2. Arizona State University, pp. 515–526, 2011."},"oa":1,"doi":"10.3934/mbe.2011.8.515","date_published":"2011-04-02T00:00:00Z","month":"04","day":"02"},{"intvolume":" 79","publisher":"Academic Press","status":"public","title":"The number of equilibria in the diallelic Levene model with multiple demes","publication_status":"published","_id":"1863","year":"2011","acknowledgement":"FWF 21305","volume":79,"date_created":"2018-12-11T11:54:25Z","date_updated":"2021-01-12T06:53:42Z","author":[{"full_name":"Sebastian Novak","id":"461468AE-F248-11E8-B48F-1D18A9856A87","first_name":"Sebastian","last_name":"Novak"}],"type":"journal_article","extern":1,"license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","publist_id":"5236","issue":"3","abstract":[{"text":"The Levene model is the simplest mathematical model to describe the evolution of gene frequencies in spatially subdivided populations. It provides insight into how locally varying selection promotes a population’s genetic diversity. Despite its simplicity, interesting problems have remained unsolved even in the diallelic case. In this paper we answer an open problem by establishing that for two alleles at one locus and J demes, up to 2J−1 polymorphic equilibria may coexist. We first present a proof for the case of stable monomorphisms and then show that the result also holds for protected alleles. These findings allow us to prove that any odd number (up to 2J−1) of equilibria is possible, before we extend the proof to even numbers. We conclude with some numerical results and show that for J>2, the proportion of parameter space affording this maximum is extremely small.","lang":"eng"}],"page":"97 - 101","quality_controlled":0,"tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png"},"citation":{"ista":"Novak S. 2011. The number of equilibria in the diallelic Levene model with multiple demes. Theoretical Population Biology. 79(3), 97–101.","apa":"Novak, S. (2011). The number of equilibria in the diallelic Levene model with multiple demes. Theoretical Population Biology. Academic Press. https://doi.org/10.1016/j.tpb.2010.12.002","ieee":"S. Novak, “The number of equilibria in the diallelic Levene model with multiple demes,” Theoretical Population Biology, vol. 79, no. 3. Academic Press, pp. 97–101, 2011.","ama":"Novak S. The number of equilibria in the diallelic Levene model with multiple demes. Theoretical Population Biology. 2011;79(3):97-101. doi:10.1016/j.tpb.2010.12.002","chicago":"Novak, Sebastian. “The Number of Equilibria in the Diallelic Levene Model with Multiple Demes.” Theoretical Population Biology. Academic Press, 2011. https://doi.org/10.1016/j.tpb.2010.12.002.","mla":"Novak, Sebastian. “The Number of Equilibria in the Diallelic Levene Model with Multiple Demes.” Theoretical Population Biology, vol. 79, no. 3, Academic Press, 2011, pp. 97–101, doi:10.1016/j.tpb.2010.12.002.","short":"S. Novak, Theoretical Population Biology 79 (2011) 97–101."},"publication":"Theoretical Population Biology","date_published":"2011-05-01T00:00:00Z","doi":"10.1016/j.tpb.2010.12.002","month":"05","day":"01"},{"author":[{"full_name":"Yip, Chui Y","last_name":"Yip","first_name":"Chui"},{"full_name":"Harbour, Michael E","first_name":"Michael","last_name":"Harbour"},{"last_name":"Jayawardena","first_name":"Kamburapola","full_name":"Jayawardena, Kamburapola G"},{"full_name":"Fearnley, Ian M","first_name":"Ian","last_name":"Fearnley"},{"id":"338D39FE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0977-7989","first_name":"Leonid A","last_name":"Sazanov","full_name":"Leonid Sazanov"}],"date_created":"2018-12-11T11:55:00Z","date_updated":"2021-01-12T06:54:27Z","volume":286,"acknowledgement":"This work was supported by the Medical Research Council. ","_id":"1975","year":"2011","status":"public","publication_status":"published","title":"Evolution of respiratory complex I "Supernumerary" subunits are present in the α-proteobacterial enzyme","intvolume":" 286","publisher":"American Society for Biochemistry and Molecular Biology","abstract":[{"lang":"eng","text":"Modern α-proteobacteria are thought to be closely related to the ancient symbiont of eukaryotes, an ancestor of mitochondria. Respiratory complex I from α-proteobacteria and mitochondria is well conserved at the level of the 14 "core" subunits, consistent with that notion. Mitochondrial complex I contains the core subunits, present in all species, and up to 31 "supernumerary" subunits, generally thought to have originated only within eukaryotic lineages. However, the full protein composition of an α-proteobacterial complex I has not been established previously. Here, we report the first purification and characterization of complex I from the α-proteobacterium Paracoccus denitrificans. Single particle electron microscopy shows that the complex has a well defined L-shape. Unexpectedly, in addition to the 14 core subunits, the enzyme also contains homologues of three supernumerary mitochondrial subunits as follows: B17.2, AQDQ/18, and 13 kDa (bovine nomenclature). This finding suggests that evolution of complex I via addition of supernumerary or "accessory" subunits started before the original endosymbiotic event that led to the creation of the eukaryotic cell. It also provides further confirmation that α-proteobacteria are the closest extant relatives of mitochondria."}],"issue":"7","publist_id":"5112","extern":1,"type":"journal_article","date_published":"2011-02-18T00:00:00Z","doi":"10.1074/jbc.M110.194993","publication":"Journal of Biological Chemistry","citation":{"apa":"Yip, C., Harbour, M., Jayawardena, K., Fearnley, I., & Sazanov, L. A. (2011). Evolution of respiratory complex I "Supernumerary" subunits are present in the α-proteobacterial enzyme. Journal of Biological Chemistry. American Society for Biochemistry and Molecular Biology. https://doi.org/10.1074/jbc.M110.194993","ieee":"C. Yip, M. Harbour, K. Jayawardena, I. Fearnley, and L. A. Sazanov, “Evolution of respiratory complex I "Supernumerary" subunits are present in the α-proteobacterial enzyme,” Journal of Biological Chemistry, vol. 286, no. 7. American Society for Biochemistry and Molecular Biology, pp. 5023–5033, 2011.","ista":"Yip C, Harbour M, Jayawardena K, Fearnley I, Sazanov LA. 2011. Evolution of respiratory complex I "Supernumerary" subunits are present in the α-proteobacterial enzyme. Journal of Biological Chemistry. 286(7), 5023–5033.","ama":"Yip C, Harbour M, Jayawardena K, Fearnley I, Sazanov LA. Evolution of respiratory complex I "Supernumerary" subunits are present in the α-proteobacterial enzyme. Journal of Biological Chemistry. 2011;286(7):5023-5033. doi:10.1074/jbc.M110.194993","chicago":"Yip, Chui, Michael Harbour, Kamburapola Jayawardena, Ian Fearnley, and Leonid A Sazanov. “Evolution of Respiratory Complex I "Supernumerary" Subunits Are Present in the α-Proteobacterial Enzyme.” Journal of Biological Chemistry. American Society for Biochemistry and Molecular Biology, 2011. https://doi.org/10.1074/jbc.M110.194993.","short":"C. Yip, M. Harbour, K. Jayawardena, I. Fearnley, L.A. Sazanov, Journal of Biological Chemistry 286 (2011) 5023–5033.","mla":"Yip, Chui, et al. “Evolution of Respiratory Complex I "Supernumerary" Subunits Are Present in the α-Proteobacterial Enzyme.” Journal of Biological Chemistry, vol. 286, no. 7, American Society for Biochemistry and Molecular Biology, 2011, pp. 5023–33, doi:10.1074/jbc.M110.194993."},"quality_controlled":0,"page":"5023 - 5033","month":"02","day":"18"},{"type":"journal_article","extern":1,"abstract":[{"lang":"eng","text":"Complex I is the first and largest enzyme of the respiratory chain, coupling electron transfer between NADH and ubiquinone to the translocation of four protons across the membrane. It has a central role in cellular energy production and has been implicated in many human neurodegenerative diseases. The L-shaped enzyme consists of hydrophilic and membrane domains. Previously, we determined the structure of the hydrophilic domain. Here we report the crystal structure of the Esherichia coli complex I membrane domain at 3.0 Ã. resolution. It includes six subunits, NuoL, NuoM, NuoN, NuoA, NuoJ and NuoK, with 55 transmembrane helices. The fold of the homologous antiporter-like subunits L, M and N is novel, with two inverted structural repeats of five transmembrane helices arranged, unusually, face-to-back. Each repeat includes a discontinuous transmembrane helix and forms half of a channel across the membrane. A network of conserved polar residues connects the two half-channels, completing the proton translocation pathway. Unexpectedly, lysines rather than carboxylate residues act as the main elements of the proton pump in these subunits. The fourth probable proton-translocation channel is at the interface of subunits N, K, J and A. The structure indicates that proton translocation in complex I, uniquely, involves coordinated conformational changes in six symmetrical structural elements."}],"issue":"7361","publist_id":"5110","status":"public","title":"Structure of the membrane domain of respiratory complex i","publication_status":"published","publisher":"Nature Publishing Group","intvolume":" 476","_id":"1973","acknowledgement":"This work was funded by the Medical Research Council.","year":"2011","date_created":"2018-12-11T11:54:59Z","date_updated":"2021-01-12T06:54:26Z","volume":476,"author":[{"full_name":"Efremov, Rouslan G","last_name":"Efremov","first_name":"Rouslan"},{"full_name":"Leonid Sazanov","orcid":"0000-0002-0977-7989","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","last_name":"Sazanov","first_name":"Leonid A"}],"month":"08","day":"25","quality_controlled":0,"page":"414 - 421","publication":"Nature","citation":{"apa":"Efremov, R., & Sazanov, L. A. (2011). Structure of the membrane domain of respiratory complex i. Nature. Nature Publishing Group. https://doi.org/10.1038/nature10330","ieee":"R. Efremov and L. A. Sazanov, “Structure of the membrane domain of respiratory complex i,” Nature, vol. 476, no. 7361. Nature Publishing Group, pp. 414–421, 2011.","ista":"Efremov R, Sazanov LA. 2011. Structure of the membrane domain of respiratory complex i. Nature. 476(7361), 414–421.","ama":"Efremov R, Sazanov LA. Structure of the membrane domain of respiratory complex i. Nature. 2011;476(7361):414-421. doi:10.1038/nature10330","chicago":"Efremov, Rouslan, and Leonid A Sazanov. “Structure of the Membrane Domain of Respiratory Complex I.” Nature. Nature Publishing Group, 2011. https://doi.org/10.1038/nature10330.","short":"R. Efremov, L.A. Sazanov, Nature 476 (2011) 414–421.","mla":"Efremov, Rouslan, and Leonid A. Sazanov. “Structure of the Membrane Domain of Respiratory Complex I.” Nature, vol. 476, no. 7361, Nature Publishing Group, 2011, pp. 414–21, doi:10.1038/nature10330."},"doi":"10.1038/nature10330","date_published":"2011-08-25T00:00:00Z"},{"volume":21,"date_created":"2018-12-11T11:54:59Z","date_updated":"2021-01-12T06:54:27Z","author":[{"last_name":"Efremov","first_name":"Rouslan","full_name":"Efremov, Rouslan G"},{"full_name":"Leonid Sazanov","orcid":"0000-0002-0977-7989","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","last_name":"Sazanov","first_name":"Leonid A"}],"intvolume":" 21","publisher":"Elsevier","publication_status":"published","title":"Respiratory complex I: 'steam engine' of the cell?","status":"public","acknowledgement":"The work in authors’ laboratory was funded by the Medical Research Council.","_id":"1974","year":"2011","extern":1,"issue":"4","publist_id":"5111","abstract":[{"text":"Complex I is the first enzyme of the respiratory chain and plays a central role in cellular energy production. It has been implicated in many human neurodegenerative diseases, as well as in ageing. One of the biggest membrane protein complexes, it is an L-shaped assembly consisting of hydrophilic and membrane domains. Previously, we have determined structures of the hydrophilic domain in several redox states. Last year was marked by fascinating breakthroughs in the understanding of the complete structure. We described the architecture of the membrane domain and of the entire bacterial complex I. X-ray analysis of the larger mitochondrial enzyme has also been published. The core subunits of the bacterial and mitochondrial enzymes have remarkably similar structures. The proposed mechanism of coupling between electron transfer and proton translocation involves long-range conformational changes, coordinated in part by a long α-helix, akin to the coupling rod of a steam engine.","lang":"eng"}],"type":"journal_article","doi":"10.1016/j.sbi.2011.07.002","date_published":"2011-08-01T00:00:00Z","page":"532 - 540","quality_controlled":0,"citation":{"chicago":"Efremov, Rouslan, and Leonid A Sazanov. “Respiratory Complex I: ‘steam Engine’ of the Cell?” Current Opinion in Structural Biology. Elsevier, 2011. https://doi.org/10.1016/j.sbi.2011.07.002.","mla":"Efremov, Rouslan, and Leonid A. Sazanov. “Respiratory Complex I: ‘steam Engine’ of the Cell?” Current Opinion in Structural Biology, vol. 21, no. 4, Elsevier, 2011, pp. 532–40, doi:10.1016/j.sbi.2011.07.002.","short":"R. Efremov, L.A. Sazanov, Current Opinion in Structural Biology 21 (2011) 532–540.","ista":"Efremov R, Sazanov LA. 2011. Respiratory complex I: ‘steam engine’ of the cell? Current Opinion in Structural Biology. 21(4), 532–540.","apa":"Efremov, R., & Sazanov, L. A. (2011). Respiratory complex I: “steam engine” of the cell? Current Opinion in Structural Biology. Elsevier. https://doi.org/10.1016/j.sbi.2011.07.002","ieee":"R. Efremov and L. A. Sazanov, “Respiratory complex I: ‘steam engine’ of the cell?,” Current Opinion in Structural Biology, vol. 21, no. 4. Elsevier, pp. 532–540, 2011.","ama":"Efremov R, Sazanov LA. Respiratory complex I: “steam engine” of the cell? Current Opinion in Structural Biology. 2011;21(4):532-540. doi:10.1016/j.sbi.2011.07.002"},"publication":"Current Opinion in Structural Biology","day":"01","month":"08"},{"abstract":[{"text":"\n\nIn Escherichia coli, the pole-to-pole oscillation of the Min proteins directs septum formation to midcell, which is required for symmetric cell division. In vitro, protein waves emerge from the self-organization of MinD, a membrane-binding ATPase, and its activator MinE. For wave propagation, the proteins need to cycle through states of collective membrane binding and unbinding. Although MinD presumably undergoes cooperative membrane attachment, it is unclear how synchronous detachment is coordinated. We used confocal and single-molecule microscopy to elucidate the order of events during Min wave propagation. We propose that protein detachment at the rear of the wave, and the formation of the E-ring, are accomplished by two complementary processes: first, local accumulation of MinE due to rapid rebinding, leading to dynamic instability; and second, a structural change induced by membrane-interaction of MinE in an equimolar MinD-MinE (MinDE) complex, which supports the robustness of pattern formation.","lang":"eng"}],"issue":"5","publist_id":"5098","extern":1,"type":"journal_article","author":[{"id":"462D4284-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7309-9724","first_name":"Martin","last_name":"Loose","full_name":"Martin Loose"},{"full_name":"Fischer-Friedrich, Elisabeth","last_name":"Fischer Friedrich","first_name":"Elisabeth"},{"last_name":"Herold","first_name":"Christoph","full_name":"Herold, Christoph"},{"first_name":"Karsten","last_name":"Kruse","full_name":"Kruse, Karsten"},{"last_name":"Schwille","first_name":"Petra","full_name":"Schwille, Petra "}],"date_created":"2018-12-11T11:55:03Z","date_updated":"2021-01-12T06:54:31Z","volume":18,"acknowledgement":"This work was also supported by the Max Planck Society (M.L., E.F.-F., P.S.).","_id":"1985","year":"2011","status":"public","publication_status":"published","title":"Min protein patterns emerge from rapid rebinding and membrane interaction of MinE","intvolume":" 18","publisher":"Nature Publishing Group","month":"05","day":"01","doi":"10.1038/nsmb.2037","date_published":"2011-05-01T00:00:00Z","publication":"Nature Structural and Molecular Biology","citation":{"ama":"Loose M, Fischer Friedrich E, Herold C, Kruse K, Schwille P. Min protein patterns emerge from rapid rebinding and membrane interaction of MinE. Nature Structural and Molecular Biology. 2011;18(5):577-583. doi:10.1038/nsmb.2037","ieee":"M. Loose, E. Fischer Friedrich, C. Herold, K. Kruse, and P. Schwille, “Min protein patterns emerge from rapid rebinding and membrane interaction of MinE,” Nature Structural and Molecular Biology, vol. 18, no. 5. Nature Publishing Group, pp. 577–583, 2011.","apa":"Loose, M., Fischer Friedrich, E., Herold, C., Kruse, K., & Schwille, P. (2011). Min protein patterns emerge from rapid rebinding and membrane interaction of MinE. Nature Structural and Molecular Biology. Nature Publishing Group. https://doi.org/10.1038/nsmb.2037","ista":"Loose M, Fischer Friedrich E, Herold C, Kruse K, Schwille P. 2011. Min protein patterns emerge from rapid rebinding and membrane interaction of MinE. Nature Structural and Molecular Biology. 18(5), 577–583.","short":"M. Loose, E. Fischer Friedrich, C. Herold, K. Kruse, P. Schwille, Nature Structural and Molecular Biology 18 (2011) 577–583.","mla":"Loose, Martin, et al. “Min Protein Patterns Emerge from Rapid Rebinding and Membrane Interaction of MinE.” Nature Structural and Molecular Biology, vol. 18, no. 5, Nature Publishing Group, 2011, pp. 577–83, doi:10.1038/nsmb.2037.","chicago":"Loose, Martin, Elisabeth Fischer Friedrich, Christoph Herold, Karsten Kruse, and Petra Schwille. “Min Protein Patterns Emerge from Rapid Rebinding and Membrane Interaction of MinE.” Nature Structural and Molecular Biology. Nature Publishing Group, 2011. https://doi.org/10.1038/nsmb.2037."},"quality_controlled":0,"page":"577 - 583"},{"month":"06","day":"09","quality_controlled":0,"page":"315 - 336","publication":"Annual Review of Biophysics","citation":{"apa":"Loose, M., Kruse, K., & Schwille, P. (2011). Protein self-organization: Lessons from the min system. Annual Review of Biophysics. Annual Reviews. https://doi.org/10.1146/annurev-biophys-042910-155332","ieee":"M. Loose, K. Kruse, and P. Schwille, “Protein self-organization: Lessons from the min system,” Annual Review of Biophysics, vol. 40, no. 1. Annual Reviews, pp. 315–336, 2011.","ista":"Loose M, Kruse K, Schwille P. 2011. Protein self-organization: Lessons from the min system. Annual Review of Biophysics. 40(1), 315–336.","ama":"Loose M, Kruse K, Schwille P. Protein self-organization: Lessons from the min system. Annual Review of Biophysics. 2011;40(1):315-336. doi:10.1146/annurev-biophys-042910-155332","chicago":"Loose, Martin, Karsten Kruse, and Petra Schwille. “Protein Self-Organization: Lessons from the Min System.” Annual Review of Biophysics. Annual Reviews, 2011. https://doi.org/10.1146/annurev-biophys-042910-155332.","short":"M. Loose, K. Kruse, P. Schwille, Annual Review of Biophysics 40 (2011) 315–336.","mla":"Loose, Martin, et al. “Protein Self-Organization: Lessons from the Min System.” Annual Review of Biophysics, vol. 40, no. 1, Annual Reviews, 2011, pp. 315–36, doi:10.1146/annurev-biophys-042910-155332."},"doi":"10.1146/annurev-biophys-042910-155332","date_published":"2011-06-09T00:00:00Z","type":"journal_article","extern":1,"abstract":[{"text":"One of the most fundamental features of biological systems is probably their ability to self-organize in space and time on different scales. Despite many elaborate theoretical models of how molecular self-organization can come about, only a few experimental systems of biological origin have so far been rigorously described, due mostly to their inherent complexity. The most promising strategy of modern biophysics is thus to identify minimal biological systems showing self-organized emergent behavior. One of the best-understood examples of protein self-organization, which has recently been successfully reconstituted in vitro, is represented by the oscillations of the Min proteins in Escherichia coli. In this review, we summarize the current understanding of the mechanism of Min protein self-organization in vivo and in vitro. We discuss the potential of the Min oscillations to sense the geometry of the cell and suggest that spontaneous protein waves could be a general means of intracellular organization. We hypothesize that cooperative membrane binding and unbinding, e.g., as an energy-dependent switch, may act as an important regulatory mechanism for protein oscillations and pattern formation in the cell.","lang":"eng"}],"issue":"1","publist_id":"5097","publication_status":"published","title":"Protein self-organization: Lessons from the min system","status":"public","publisher":"Annual Reviews","intvolume":" 40","_id":"1986","year":"2011","date_created":"2018-12-11T11:55:04Z","date_updated":"2021-01-12T06:54:31Z","volume":40,"author":[{"full_name":"Martin Loose","first_name":"Martin","last_name":"Loose","id":"462D4284-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-7309-9724"},{"first_name":"Karsten","last_name":"Kruse","full_name":"Kruse, Karsten"},{"first_name":"Petra","last_name":"Schwille","full_name":"Schwille, Petra "}]},{"quality_controlled":"1","tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png","short":"CC BY-NC (4.0)"},"oa":1,"language":[{"iso":"eng"}],"doi":"10.1093/gbe/evr010","month":"02","publisher":"Oxford University Press","publication_status":"published","year":"2011","volume":3,"date_updated":"2021-01-12T06:55:08Z","date_created":"2018-12-11T11:55:33Z","author":[{"last_name":"Vicoso","first_name":"Beatriz","orcid":"0000-0002-4579-8306","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","full_name":"Vicoso, Beatriz"},{"full_name":"Bachtrog, Doris","first_name":"Doris","last_name":"Bachtrog"}],"license":"https://creativecommons.org/licenses/by-nc/4.0/","extern":"1","publist_id":"4966","file_date_updated":"2020-07-14T12:45:27Z","page":"230 - 235","citation":{"ista":"Vicoso B, Bachtrog D. 2011. Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. Genome Biology and Evolution. 3(1), 230–235.","ieee":"B. Vicoso and D. Bachtrog, “Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite,” Genome Biology and Evolution, vol. 3, no. 1. Oxford University Press, pp. 230–235, 2011.","apa":"Vicoso, B., & Bachtrog, D. (2011). Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. Genome Biology and Evolution. Oxford University Press. https://doi.org/10.1093/gbe/evr010","ama":"Vicoso B, Bachtrog D. Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite. Genome Biology and Evolution. 2011;3(1):230-235. doi:10.1093/gbe/evr010","chicago":"Vicoso, Beatriz, and Doris Bachtrog. “Lack of Global Dosage Compensation in Schistosoma Mansoni, a Female-Heterogametic Parasite.” Genome Biology and Evolution. Oxford University Press, 2011. https://doi.org/10.1093/gbe/evr010.","mla":"Vicoso, Beatriz, and Doris Bachtrog. “Lack of Global Dosage Compensation in Schistosoma Mansoni, a Female-Heterogametic Parasite.” Genome Biology and Evolution, vol. 3, no. 1, Oxford University Press, 2011, pp. 230–35, doi:10.1093/gbe/evr010.","short":"B. Vicoso, D. Bachtrog, Genome Biology and Evolution 3 (2011) 230–235."},"publication":"Genome Biology and Evolution","date_published":"2011-02-11T00:00:00Z","has_accepted_license":"1","day":"11","intvolume":" 3","title":"Lack of global dosage compensation in Schistosoma mansoni, a female-heterogametic parasite","ddc":["570"],"status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"2072","file":[{"access_level":"open_access","file_name":"2011_GBE_Vicoso.pdf","creator":"dernst","file_size":212547,"content_type":"application/pdf","file_id":"6395","relation":"main_file","checksum":"7855c134436e4f6a13d63b6606d7e8dd","date_created":"2019-05-10T07:41:28Z","date_updated":"2020-07-14T12:45:27Z"}],"oa_version":"Published Version","type":"journal_article","issue":"1","abstract":[{"text":"Many species have morphologically and genetically differentiated sex chromosomes, such as the XY pair of mammals. Y chromosomes are often highly degenerated and carry few functional genes, so that XY males have only one copy of most Xlinked genes (whereas females have two). As a result, chromosome-wide mechanisms of dosage compensation, such as the mammalian X-inactivation, often evolve to reestablish expression balance. A similar phenomenon is expected in femaleheterogametic species, where ZW females should suffer from imbalances due to W-chromosome degeneration. However, no global dosage compensation mechanisms have been detected in the two independent ZW systems that have been studied systematically (birds and silkworm), leading to the suggestion that lack of global dosage compensation may be a general feature of female-heterogametic species. However, analyses of other independently evolved ZW systems are required to test if this is the case. In this study, we use published genomic and expression data to test for the presence of global dosage compensation in Schistosoma mansoni, a trematode parasite that causes schistosomiasis in humans. We find that Z-linked expression is reduced relative to autosomal expression in females but not males, consistent with incomplete or localized dosage compensation. This gives further support to the theory that female-heterogametic species may not require global mechanisms of dosage compensation.","lang":"eng"}]},{"intvolume":" 30","publisher":"ACM","publication_status":"published","title":"High-quality passive facial performance capture using anchor frames","status":"public","_id":"2099","year":"2011","volume":30,"date_created":"2018-12-11T11:55:42Z","date_updated":"2021-01-12T06:55:17Z","author":[{"full_name":"Beeler, Thabo","last_name":"Beeler","first_name":"Thabo"},{"first_name":"Fabian","last_name":"Hahn","full_name":"Hahn, Fabian"},{"first_name":"Derek","last_name":"Bradley","full_name":"Bradley, Derek J"},{"last_name":"Bickel","first_name":"Bernd","orcid":"0000-0001-6511-9385","id":"49876194-F248-11E8-B48F-1D18A9856A87","full_name":"Bernd Bickel"},{"first_name":"Paul","last_name":"Beardsley","full_name":"Beardsley, Paul A"},{"last_name":"Gotsman","first_name":"Craig","full_name":"Gotsman, Craig"},{"full_name":"Sumner, Robert W","last_name":"Sumner","first_name":"Robert"},{"full_name":"Groß, Markus S","last_name":"Groß","first_name":"Markus"}],"type":"journal_article","extern":1,"publist_id":"4936","issue":"4","abstract":[{"text":"We present a new technique for passive and markerless facial performance capture based on anchor frames. Our method starts with high resolution per-frame geometry acquisition using state-of-theart stereo reconstruction, and proceeds to establish a single triangle mesh that is propagated through the entire performance. Leveraging the fact that facial performances often contain repetitive subsequences, we identify anchor frames as those which contain similar facial expressions to a manually chosen reference expression. Anchor frames are automatically computed over one or even multiple performances. We introduce a robust image-space tracking method that computes pixel matches directly from the reference frame to all anchor frames, and thereby to the remaining frames in the sequence via sequential matching. This allows us to propagate one reconstructed frame to an entire sequence in parallel, in contrast to previous sequential methods. Our anchored reconstruction approach also limits tracker drift and robustly handles occlusions and motion blur. The parallel tracking and mesh propagation offer low computation times. Our technique will even automatically match anchor frames across different sequences captured on different occasions, propagating a single mesh to all performances.","lang":"eng"}],"quality_controlled":0,"citation":{"mla":"Beeler, Thabo, et al. “High-Quality Passive Facial Performance Capture Using Anchor Frames.” ACM Transactions on Graphics, vol. 30, no. 4, ACM, 2011, doi:10.1145/2010324.1964970.","short":"T. Beeler, F. Hahn, D. Bradley, B. Bickel, P. Beardsley, C. Gotsman, R. Sumner, M. Groß, ACM Transactions on Graphics 30 (2011).","chicago":"Beeler, Thabo, Fabian Hahn, Derek Bradley, Bernd Bickel, Paul Beardsley, Craig Gotsman, Robert Sumner, and Markus Groß. “High-Quality Passive Facial Performance Capture Using Anchor Frames.” ACM Transactions on Graphics. ACM, 2011. https://doi.org/10.1145/2010324.1964970.","ama":"Beeler T, Hahn F, Bradley D, et al. High-quality passive facial performance capture using anchor frames. ACM Transactions on Graphics. 2011;30(4). doi:10.1145/2010324.1964970","ista":"Beeler T, Hahn F, Bradley D, Bickel B, Beardsley P, Gotsman C, Sumner R, Groß M. 2011. High-quality passive facial performance capture using anchor frames. ACM Transactions on Graphics. 30(4).","ieee":"T. Beeler et al., “High-quality passive facial performance capture using anchor frames,” ACM Transactions on Graphics, vol. 30, no. 4. ACM, 2011.","apa":"Beeler, T., Hahn, F., Bradley, D., Bickel, B., Beardsley, P., Gotsman, C., … Groß, M. (2011). High-quality passive facial performance capture using anchor frames. ACM Transactions on Graphics. ACM. https://doi.org/10.1145/2010324.1964970"},"publication":"ACM Transactions on Graphics","doi":"10.1145/2010324.1964970","date_published":"2011-07-01T00:00:00Z","month":"07","day":"01"},{"_id":"2098","year":"2011","publisher":"Science Direct","title":"From sparse mocap to highly detailed facial animation","status":"public","publication_status":"published","author":[{"last_name":"Bickel","first_name":"Bernd","orcid":"0000-0001-6511-9385","id":"49876194-F248-11E8-B48F-1D18A9856A87","full_name":"Bernd Bickel"},{"full_name":"Lang, Manuel","first_name":"Manuel","last_name":"Lang"}],"date_updated":"2021-01-12T06:55:17Z","date_created":"2018-12-11T11:55:42Z","type":"book_chapter","publist_id":"4935","abstract":[{"lang":"eng","text":"This chapter presents a method for real-time animation of highly detailed facial expressions based on sparse motion captures data and a limited set of static example poses. The method for real-time animation of highly detailed facial expressions decomposes geometry into large-scale motion and fine-scale details, such as expression wrinkles. Both large- and fine-scale deformation algorithms run entirely on the GPU, and our implementation based on CUDA achieves an overall performance of about 30 fps. The face conveys the most relevant visual characteristics of human identity and expression. Hence, realistic facial animations or interactions with virtual avatars are important for storytelling and gameplay. However, current approaches are either computationally expensive, require very specialized capture hardware, or are extremely labor intensive. At runtime, given an arbitrary facial expression, the algorithm computes the skin strain from the relative distance between marker points and derives fine-scale corrections for the largescale deformation. During gameplay only the sparse set of marker-point positions is transmitted to the GPU. The face animation is entirely computed on the GPU where the resulting mesh can directly be used as input for the rendering stages. This data can be easily obtained by traditional capture hardware. The proposed in-game algorithm is fast. It also is easy to implement and maps well onto programmable GPUs."}],"extern":1,"citation":{"mla":"Bickel, Bernd, and Manuel Lang. “From Sparse Mocap to Highly Detailed Facial Animation.” GPU Computing Gems Emerald Edition, Science Direct, 2011, pp. 413–26, doi:10.1016/B978-0-12-384988-5.00027-9.","short":"B. Bickel, M. Lang, in:, GPU Computing Gems Emerald Edition, Science Direct, 2011, pp. 413–426.","chicago":"Bickel, Bernd, and Manuel Lang. “From Sparse Mocap to Highly Detailed Facial Animation.” In GPU Computing Gems Emerald Edition, 413–26. Science Direct, 2011. https://doi.org/10.1016/B978-0-12-384988-5.00027-9.","ama":"Bickel B, Lang M. From sparse mocap to highly detailed facial animation. In: GPU Computing Gems Emerald Edition. Science Direct; 2011:413-426. doi:10.1016/B978-0-12-384988-5.00027-9","ista":"Bickel B, Lang M. 2011.From sparse mocap to highly detailed facial animation. In: GPU Computing Gems Emerald Edition. , 413–426.","apa":"Bickel, B., & Lang, M. (2011). From sparse mocap to highly detailed facial animation. In GPU Computing Gems Emerald Edition (pp. 413–426). Science Direct. https://doi.org/10.1016/B978-0-12-384988-5.00027-9","ieee":"B. Bickel and M. Lang, “From sparse mocap to highly detailed facial animation,” in GPU Computing Gems Emerald Edition, Science Direct, 2011, pp. 413–426."},"publication":"GPU Computing Gems Emerald Edition","page":"413 - 426","quality_controlled":0,"date_published":"2011-01-01T00:00:00Z","doi":"10.1016/B978-0-12-384988-5.00027-9","month":"01","day":"01"},{"date_created":"2018-12-11T11:55:43Z","date_updated":"2021-01-12T06:55:19Z","author":[{"first_name":"Jonas","last_name":"Pfeil","full_name":"Pfeil, Jonas"},{"last_name":"Hildebrand","first_name":"Kristian","full_name":"Hildebrand, Kristian"},{"first_name":"Carsten","last_name":"Gremzow","full_name":"Gremzow, Carsten"},{"id":"49876194-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6511-9385","first_name":"Bernd","last_name":"Bickel","full_name":"Bernd Bickel"},{"full_name":"Alexa, Marc","first_name":"Marc","last_name":"Alexa"}],"publication_status":"published","status":"public","title":"Throwable panoramic ball camera","publisher":"ACM","_id":"2100","year":"2011","extern":1,"abstract":[{"text":"Acquiring panoramic images using stitching takes a lot of time and moving objects may cause ghosting. It is also difficult to obtain a full spherical panorama, because the downward picture cannot be captured while the camera is mounted on the tripod.","lang":"eng"}],"publist_id":"4934","type":"conference","conference":{"name":"SIGGRAPH Asia"},"date_published":"2011-12-01T00:00:00Z","doi":"10.1145/2073370.2073373","quality_controlled":0,"citation":{"mla":"Pfeil, Jonas, et al. Throwable Panoramic Ball Camera. ACM, 2011, doi:10.1145/2073370.2073373.","short":"J. Pfeil, K. Hildebrand, C. Gremzow, B. Bickel, M. Alexa, in:, ACM, 2011.","chicago":"Pfeil, Jonas, Kristian Hildebrand, Carsten Gremzow, Bernd Bickel, and Marc Alexa. “Throwable Panoramic Ball Camera.” ACM, 2011. https://doi.org/10.1145/2073370.2073373.","ama":"Pfeil J, Hildebrand K, Gremzow C, Bickel B, Alexa M. Throwable panoramic ball camera. In: ACM; 2011. doi:10.1145/2073370.2073373","ista":"Pfeil J, Hildebrand K, Gremzow C, Bickel B, Alexa M. 2011. Throwable panoramic ball camera. SIGGRAPH Asia.","apa":"Pfeil, J., Hildebrand, K., Gremzow, C., Bickel, B., & Alexa, M. (2011). Throwable panoramic ball camera. Presented at the SIGGRAPH Asia, ACM. https://doi.org/10.1145/2073370.2073373","ieee":"J. Pfeil, K. Hildebrand, C. Gremzow, B. Bickel, and M. Alexa, “Throwable panoramic ball camera,” presented at the SIGGRAPH Asia, 2011."},"month":"12","day":"01"},{"publication":"Parabolic Problems","citation":{"ieee":"J. Maas and J. Van Neerven, “Gradient estimates and domain identification for analytic Ornstein-Uhlenbeck operators,” in Parabolic Problems, vol. 80, Birkhäuser, 2011, pp. 463–477.","apa":"Maas, J., & Van Neerven, J. (2011). Gradient estimates and domain identification for analytic Ornstein-Uhlenbeck operators. In Parabolic Problems (Vol. 80, pp. 463–477). Birkhäuser. https://doi.org/10.1007/978-3-0348-0075-4_24","ista":"Maas J, Van Neerven J. 2011.Gradient estimates and domain identification for analytic Ornstein-Uhlenbeck operators. In: Parabolic Problems. vol. 80, 463–477.","ama":"Maas J, Van Neerven J. Gradient estimates and domain identification for analytic Ornstein-Uhlenbeck operators. In: Parabolic Problems. Vol 80. Birkhäuser; 2011:463-477. doi:10.1007/978-3-0348-0075-4_24","chicago":"Maas, Jan, and Jan Van Neerven. “Gradient Estimates and Domain Identification for Analytic Ornstein-Uhlenbeck Operators.” In Parabolic Problems, 80:463–77. Birkhäuser, 2011. https://doi.org/10.1007/978-3-0348-0075-4_24.","short":"J. Maas, J. Van Neerven, in:, Parabolic Problems, Birkhäuser, 2011, pp. 463–477.","mla":"Maas, Jan, and Jan Van Neerven. “Gradient Estimates and Domain Identification for Analytic Ornstein-Uhlenbeck Operators.” Parabolic Problems, vol. 80, Birkhäuser, 2011, pp. 463–77, doi:10.1007/978-3-0348-0075-4_24."},"oa":1,"main_file_link":[{"url":"http://arxiv.org/abs/0911.4336 ","open_access":"1"}],"quality_controlled":0,"page":"463 - 477","date_published":"2011-06-10T00:00:00Z","doi":"10.1007/978-3-0348-0075-4_24","day":"10","month":"06","year":"2011","_id":"2116","acknowledgement":"The authors are supported by VIDI subsidy 639.032.201 (JM) and VICI subsidy 639.033.604 (JvN) of the Netherlands Organisation for Scientific Research (NWO). ","title":"Gradient estimates and domain identification for analytic Ornstein-Uhlenbeck operators","status":"public","publication_status":"published","intvolume":" 80","publisher":"Birkhäuser","author":[{"id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0845-1338","first_name":"Jan","last_name":"Maas","full_name":"Jan Maas"},{"full_name":"Van Neerven, Jan","last_name":"Van Neerven","first_name":"Jan"}],"date_updated":"2021-01-12T06:55:24Z","date_created":"2018-12-11T11:55:48Z","volume":80,"type":"book_chapter","abstract":[{"text":"Let P be the Ornstein-Uhlenbeck semigroup associated with the stochastic Cauchy problem dU(t)=AU(t)dt+dWH(t), where A is the generator of a C 0-semigroup S on a Banach space E, H is a Hilbert subspace of E, and W H is an H-cylindrical Brownian motion. Assuming that S restricts to a C 0-semigroup on H, we obtain L p -bounds for D H P(t). We show that if P is analytic, then the invariance assumption is fulfilled. As an application we determine the L p -domain of the generator of P explicitly in the case where S restricts to a C 0-semigroup on H which is similar to an analytic contraction semigroup. The results are applied to the 1D stochastic heat equation driven by additive space-time white noise.","lang":"eng"}],"publist_id":"4918","extern":1},{"_id":"2122","year":"2011","acknowledgement":"The first named author is supported by Rubicon subsidy 680-50-0901 of the Netherlands Organisation for Scientific Research (NWO). The second named author is supported by VICI subsidy 639.033.604 of the Netherlands Organisation for Scientific Research (NWO","publisher":"Universitat Autònoma de Barcelona, Departament de Matemàtique","intvolume":" 55","status":"public","publication_status":"published","title":"Conical square functions and non-tangential maximal functions with respect to the Gaussian measure","author":[{"last_name":"Maas","first_name":"Jan","orcid":"0000-0002-0845-1338","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","full_name":"Jan Maas"},{"full_name":"van Neerven, Jan M","last_name":"Van Neerven","first_name":"Jan"},{"first_name":"Pierre","last_name":"Portal","full_name":"Portal, Pierre"}],"volume":55,"date_updated":"2021-01-12T06:55:26Z","date_created":"2018-12-11T11:55:50Z","type":"journal_article","issue":"2","publist_id":"4910","abstract":[{"text":"We study, in L1(R̃n; γ) with respect to the gaussian measure, non- tangential maximal functions and conical square functions associ- ated with the Ornstein-Uhlenbeck operator by developing a set of techniques which allow us, to some extent, to compensate for the non-doubling character of the gaussian measure. The main result asserts that conical square functions can be controlled in L1-norm by non-tangential maximal functions. Along the way we prove a change of aperture result for the latter. This complements recent results on gaussian Hardy spaces due to Mauceri and Meda.","lang":"eng"}],"extern":1,"main_file_link":[{"url":"http://arxiv.org/abs/1003.4092","open_access":"1"}],"citation":{"ama":"Maas J, Van Neerven J, Portal P. Conical square functions and non-tangential maximal functions with respect to the Gaussian measure. Publicacions Matemàtiques. 2011;55(2):313-341. doi:10.5565/PUBLMAT_55211_03 ","apa":"Maas, J., Van Neerven, J., & Portal, P. (2011). Conical square functions and non-tangential maximal functions with respect to the Gaussian measure. Publicacions Matemàtiques. Universitat Autònoma de Barcelona, Departament de Matemàtique. https://doi.org/10.5565/PUBLMAT_55211_03 ","ieee":"J. Maas, J. Van Neerven, and P. Portal, “Conical square functions and non-tangential maximal functions with respect to the Gaussian measure,” Publicacions Matemàtiques, vol. 55, no. 2. Universitat Autònoma de Barcelona, Departament de Matemàtique, pp. 313–341, 2011.","ista":"Maas J, Van Neerven J, Portal P. 2011. Conical square functions and non-tangential maximal functions with respect to the Gaussian measure. Publicacions Matemàtiques. 55(2), 313–341.","short":"J. Maas, J. Van Neerven, P. Portal, Publicacions Matemàtiques 55 (2011) 313–341.","mla":"Maas, Jan, et al. “Conical Square Functions and Non-Tangential Maximal Functions with Respect to the Gaussian Measure.” Publicacions Matemàtiques, vol. 55, no. 2, Universitat Autònoma de Barcelona, Departament de Matemàtique, 2011, pp. 313–41, doi:10.5565/PUBLMAT_55211_03 .","chicago":"Maas, Jan, Jan Van Neerven, and Pierre Portal. “Conical Square Functions and Non-Tangential Maximal Functions with Respect to the Gaussian Measure.” Publicacions Matemàtiques. Universitat Autònoma de Barcelona, Departament de Matemàtique, 2011. https://doi.org/10.5565/PUBLMAT_55211_03 ."},"oa":1,"publication":"Publicacions Matemàtiques","page":"313 - 341","quality_controlled":0,"doi":"10.5565/PUBLMAT_55211_03\t ","date_published":"2011-07-01T00:00:00Z","day":"01","month":"07"},{"author":[{"last_name":"Clément","first_name":"Philippe","full_name":"Clément, Philippe"},{"full_name":"Maas, Jan","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0845-1338","first_name":"Jan","last_name":"Maas"}],"related_material":{"link":[{"url":"https://doi.org/10.1007/s00028-012-0173-z","relation":"erratum"}]},"date_created":"2018-12-11T11:55:51Z","date_updated":"2021-11-16T08:05:46Z","volume":11,"year":"2011","acknowledgement":"The second named author is supported by Rubicon subsidy 680-50-0901 of the Netherlands Organisation for Scientific Research (NWO).","publication_status":"published","publisher":"Birkhäuser","publist_id":"4911","extern":"1","doi":"10.1007/s00028-010-0096-5","language":[{"iso":"eng"}],"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1005.0998"}],"oa":1,"month":"01","oa_version":"None","_id":"2123","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","status":"public","title":"A Trotter product formula for gradient flows in metric spaces","intvolume":" 11","abstract":[{"text":"We prove a Trotter product formula for gradient flows in metric spaces. This result is applied to establish convergence in the L 2-Wasserstein metric of the splitting method for some Fokker-Planck equations and porous medium type equations perturbed by a potential.","lang":"eng"}],"issue":"2","type":"journal_article","date_published":"2011-01-21T00:00:00Z","publication":"Journal of Evolution Equations","citation":{"ista":"Clément P, Maas J. 2011. A Trotter product formula for gradient flows in metric spaces. Journal of Evolution Equations. 11(2), 405–427.","apa":"Clément, P., & Maas, J. (2011). A Trotter product formula for gradient flows in metric spaces. Journal of Evolution Equations. Birkhäuser. https://doi.org/10.1007/s00028-010-0096-5","ieee":"P. Clément and J. Maas, “A Trotter product formula for gradient flows in metric spaces,” Journal of Evolution Equations, vol. 11, no. 2. Birkhäuser, pp. 405–427, 2011.","ama":"Clément P, Maas J. A Trotter product formula for gradient flows in metric spaces. Journal of Evolution Equations. 2011;11(2):405-427. doi:10.1007/s00028-010-0096-5","chicago":"Clément, Philippe, and Jan Maas. “A Trotter Product Formula for Gradient Flows in Metric Spaces.” Journal of Evolution Equations. Birkhäuser, 2011. https://doi.org/10.1007/s00028-010-0096-5.","mla":"Clément, Philippe, and Jan Maas. “A Trotter Product Formula for Gradient Flows in Metric Spaces.” Journal of Evolution Equations, vol. 11, no. 2, Birkhäuser, 2011, pp. 405–27, doi:10.1007/s00028-010-0096-5.","short":"P. Clément, J. Maas, Journal of Evolution Equations 11 (2011) 405–427."},"page":"405 - 427","day":"21","article_processing_charge":"No"},{"_id":"2126","acknowledgement":"Supported by Rubicon subsidy 680-50-0901 of the Netherlands Organisation for Scientific Research (NWO)","year":"2011","publisher":"Academic Press","intvolume":" 261","status":"public","publication_status":"published","title":"Gradient flows of the entropy for finite Markov chains","author":[{"first_name":"Jan","last_name":"Maas","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-0845-1338","full_name":"Jan Maas"}],"volume":261,"date_created":"2018-12-11T11:55:51Z","date_updated":"2021-01-12T06:55:28Z","type":"journal_article","issue":"8","publist_id":"4909","abstract":[{"lang":"eng","text":"Let K be an irreducible and reversible Markov kernel on a finite set X. We construct a metric W on the set of probability measures on X and show that with respect to this metric, the law of the continuous time Markov chain evolves as the gradient flow of the entropy. This result is a discrete counterpart of the Wasserstein gradient flow interpretation of the heat flow in Rn by Jordan, Kinderlehrer and Otto (1998). The metric W is similar to, but different from, the L2-Wasserstein metric, and is defined via a discrete variant of the Benamou–Brenier formula.\n"}],"extern":1,"citation":{"chicago":"Maas, Jan. “Gradient Flows of the Entropy for Finite Markov Chains.” Journal of Functional Analysis. Academic Press, 2011. https://doi.org/10.1016/j.jfa.2011.06.009 .","short":"J. Maas, Journal of Functional Analysis 261 (2011) 2250–2292.","mla":"Maas, Jan. “Gradient Flows of the Entropy for Finite Markov Chains.” Journal of Functional Analysis, vol. 261, no. 8, Academic Press, 2011, pp. 2250–92, doi:10.1016/j.jfa.2011.06.009 .","ieee":"J. Maas, “Gradient flows of the entropy for finite Markov chains,” Journal of Functional Analysis, vol. 261, no. 8. Academic Press, pp. 2250–2292, 2011.","apa":"Maas, J. (2011). Gradient flows of the entropy for finite Markov chains. Journal of Functional Analysis. Academic Press. https://doi.org/10.1016/j.jfa.2011.06.009 ","ista":"Maas J. 2011. Gradient flows of the entropy for finite Markov chains. Journal of Functional Analysis. 261(8), 2250–2292.","ama":"Maas J. Gradient flows of the entropy for finite Markov chains. Journal of Functional Analysis. 2011;261(8):2250-2292. doi:10.1016/j.jfa.2011.06.009 "},"main_file_link":[{"url":"http://arxiv.org/abs/1102.5238","open_access":"1"}],"oa":1,"publication":"Journal of Functional Analysis","page":"2250 - 2292","quality_controlled":0,"date_published":"2011-03-04T00:00:00Z","doi":"10.1016/j.jfa.2011.06.009 ","month":"03","day":"04"},{"day":"04","month":"05","date_published":"2011-05-04T00:00:00Z","publication":"Unknown","main_file_link":[{"url":"http://arxiv.org/abs/1105.0761","open_access":"1"}],"oa":1,"citation":{"ama":"Ağanoğlu R, Lemeshko M, Friedrich B, González Férez R, Koch C. Controlling a diatomic shape resonance with non-resonant light. Unknown. 2011.","ista":"Ağanoğlu R, Lemeshko M, Friedrich B, González Férez R, Koch C. 2011. Controlling a diatomic shape resonance with non-resonant light. Unknown, .","apa":"Ağanoğlu, R., Lemeshko, M., Friedrich, B., González Férez, R., & Koch, C. (2011). Controlling a diatomic shape resonance with non-resonant light. Unknown. ArXiv.","ieee":"R. Ağanoğlu, M. Lemeshko, B. Friedrich, R. González Férez, and C. Koch, “Controlling a diatomic shape resonance with non-resonant light,” Unknown. ArXiv, 2011.","mla":"Ağanoğlu, Ruzin, et al. “Controlling a Diatomic Shape Resonance with Non-Resonant Light.” Unknown, ArXiv, 2011.","short":"R. Ağanoğlu, M. Lemeshko, B. Friedrich, R. González Férez, C. Koch, Unknown (2011).","chicago":"Ağanoğlu, Ruzin, Mikhail Lemeshko, Břetislav Friedrich, Rosario González Férez, and Christiane Koch. “Controlling a Diatomic Shape Resonance with Non-Resonant Light.” Unknown. ArXiv, 2011."},"quality_controlled":0,"abstract":[{"text":"A (diatomic) shape resonance is a metastable state of a pair of colliding atoms quasi-bound by the centrifugal barrier imposed by the angular momentum involved in the collision. The temporary trapping of the atoms' scattering wavefunction corresponds to an enhanced atom pair density at low interatomic separations. This leads to larger overlap of the wavefunctions involved in a molecule formation process such as photoassociation, rendering the process more efficient. However, for an ensemble of atoms, the atom pair density will only be enhanced if the energy of the resonance comes close to the temperature of the atomic ensemble. Herein we explore the possibility of controlling the energy of a shape resonance by shifting it toward the temperature of atoms confined in a trap. The shifts are imparted by the interaction of non-resonant light with the anisotropic polarizability of the atom pair, which affects both the centrifugal barrier and the pair's rotational and vibrational levels. We find that at laser intensities of up to 5×109 W/cm2 the pair density is increased by one order of magnitude for 87Rb atoms at 100μK and by two orders of magnitude for 88Sr atoms at 20μK.","lang":"eng"}],"publist_id":"4886","extern":1,"type":"preprint","author":[{"full_name":"Ağanoğlu, Ruzin","last_name":"Ağanoğlu","first_name":"Ruzin"},{"last_name":"Lemeshko","first_name":"Mikhail","orcid":"0000-0002-6990-7802","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","full_name":"Mikhail Lemeshko"},{"full_name":"Friedrich, Břetislav","first_name":"Břetislav","last_name":"Friedrich"},{"full_name":"González-Férez, Rosario","last_name":"González Férez","first_name":"Rosario"},{"last_name":"Koch","first_name":"Christiane","full_name":"Koch, Christiane P"}],"date_created":"2018-12-11T11:55:55Z","date_updated":"2021-01-12T06:55:32Z","_id":"2138","acknowledgement":"Financial support from the Deutsche Forschungsgemeinschaft (Grant No. KO 2301/2), by the Spanish project FIS2008-02380 (MICINN) as well as the Grants FQM-2445 and FQM-4643 (Junta de Andaluc´ıa), Campus de Excelencia Internacional Proyecto GENIL CEB09-0010","year":"2011","title":"Controlling a diatomic shape resonance with non-resonant light","publication_status":"published","status":"public","publisher":"ArXiv"},{"author":[{"full_name":"Mikhail Lemeshko","last_name":"Lemeshko","first_name":"Mikhail","orcid":"0000-0002-6990-7802","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Mustafa, Mustafa K","last_name":"Mustafa","first_name":"Mustafa"},{"full_name":"Kais, Sabre","first_name":"Sabre","last_name":"Kais"},{"first_name":"Břetislav","last_name":"Friedrich","full_name":"Friedrich, Břetislav"}],"volume":13,"date_created":"2018-12-11T11:56:17Z","date_updated":"2021-01-12T06:55:57Z","acknowledgement":"SK thanks the ARO for financial support","_id":"2200","year":"2011","publisher":"IOP Publishing Ltd.","intvolume":" 13","publication_status":"published","status":"public","title":"Supersymmetry identifies molecular Stark states whose eigenproperties can be obtained analytically","publist_id":"4774","abstract":[{"text":"We made use of supersymmetric (SUSY) quantum mechanics to find the condition under which the Stark effect problem for a polar and polarizable closed-shell diatomic molecule subjected to collinear electrostatic and nonresonant radiative fields becomes exactly solvable. The condition Δω = ω2/4(m+1)2 connects values of the dimensionless parameters ω and Δω that characterize the strengths of the permanent and induced dipole interactions of the molecule with the respective fields. The exact solutions are obtained for the \\J̃ = m, m; ω, Δω) family of 'stretched' states. The field-free and strong-field limits of the combined-fields problem were found to exhibit supersymmetry and shape invariance, which is indeed the reason why they are analytically solvable. By making use of the analytic form of the \\J̃ = m,m; ω, Δω) wavefunctions, we obtained simple formulae for the expectation values of the space-fixed electric dipole moment, the alignment cosine and the angular momentum squared, and derived a 'sum rule' that combines the above expectation values into a formula for the eigenenergy. The analytic expressions for the characteristics of the strongly oriented and aligned states provide direct access to the values of the interaction parameters required for creating such states in the laboratory.","lang":"eng"}],"extern":1,"type":"journal_article","date_published":"2011-06-20T00:00:00Z","doi":"10.1088/1367-2630/13/6/063036","oa":1,"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1106.4402 "}],"citation":{"ieee":"M. Lemeshko, M. Mustafa, S. Kais, and B. Friedrich, “Supersymmetry identifies molecular Stark states whose eigenproperties can be obtained analytically,” New Journal of Physics, vol. 13. IOP Publishing Ltd., 2011.","apa":"Lemeshko, M., Mustafa, M., Kais, S., & Friedrich, B. (2011). Supersymmetry identifies molecular Stark states whose eigenproperties can be obtained analytically. New Journal of Physics. IOP Publishing Ltd. https://doi.org/10.1088/1367-2630/13/6/063036","ista":"Lemeshko M, Mustafa M, Kais S, Friedrich B. 2011. Supersymmetry identifies molecular Stark states whose eigenproperties can be obtained analytically. New Journal of Physics. 13.","ama":"Lemeshko M, Mustafa M, Kais S, Friedrich B. Supersymmetry identifies molecular Stark states whose eigenproperties can be obtained analytically. New Journal of Physics. 2011;13. doi:10.1088/1367-2630/13/6/063036","chicago":"Lemeshko, Mikhail, Mustafa Mustafa, Sabre Kais, and Břetislav Friedrich. “Supersymmetry Identifies Molecular Stark States Whose Eigenproperties Can Be Obtained Analytically.” New Journal of Physics. IOP Publishing Ltd., 2011. https://doi.org/10.1088/1367-2630/13/6/063036.","short":"M. Lemeshko, M. Mustafa, S. Kais, B. Friedrich, New Journal of Physics 13 (2011).","mla":"Lemeshko, Mikhail, et al. “Supersymmetry Identifies Molecular Stark States Whose Eigenproperties Can Be Obtained Analytically.” New Journal of Physics, vol. 13, IOP Publishing Ltd., 2011, doi:10.1088/1367-2630/13/6/063036."},"publication":"New Journal of Physics","quality_controlled":0,"month":"06","day":"20"},{"year":"2011","_id":"2199","acknowledgement":"ARO ","status":"public","publication_status":"published","title":"Supersymmetric factorization yields exact solutions to the molecular Stark-effect problem for "stretched" states","intvolume":" 83","publisher":"American Physical Society","author":[{"full_name":"Mikhail Lemeshko","first_name":"Mikhail","last_name":"Lemeshko","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6990-7802"},{"first_name":"Mustafa","last_name":"Mustafa","full_name":"Mustafa, Mustafa K"},{"full_name":"Kais, Sabre","last_name":"Kais","first_name":"Sabre"},{"last_name":"Friedrich","first_name":"Břetislav","full_name":"Friedrich, Břetislav"}],"date_updated":"2021-01-12T06:55:56Z","date_created":"2018-12-11T11:56:17Z","volume":83,"type":"journal_article","abstract":[{"text":"By invoking supersymmetry, we found a condition under which the Stark-effect problem for a polar and polarizable molecule subject to nonresonant electric fields becomes exactly solvable for the family of stretched states. The analytic expressions for the wave function and eigenenergy and other expectation values allow one to readily reverse-engineer the problem of finding the values of the interaction parameters required for creating quantum states with preordained characteristics. The method also allows the construction of families of isospectral potentials, realizable with combined fields.","lang":"eng"}],"issue":"4","publist_id":"4776","extern":1,"publication":"Physical Review A - Atomic, Molecular, and Optical Physics","oa":1,"main_file_link":[{"url":"http://arxiv.org/abs/1105.5262","open_access":"1"}],"citation":{"ista":"Lemeshko M, Mustafa M, Kais S, Friedrich B. 2011. Supersymmetric factorization yields exact solutions to the molecular Stark-effect problem for "stretched" states. Physical Review A - Atomic, Molecular, and Optical Physics. 83(4).","ieee":"M. Lemeshko, M. Mustafa, S. Kais, and B. Friedrich, “Supersymmetric factorization yields exact solutions to the molecular Stark-effect problem for "stretched" states,” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 83, no. 4. American Physical Society, 2011.","apa":"Lemeshko, M., Mustafa, M., Kais, S., & Friedrich, B. (2011). Supersymmetric factorization yields exact solutions to the molecular Stark-effect problem for "stretched" states. Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society. https://doi.org/10.1103/PhysRevA.83.043415","ama":"Lemeshko M, Mustafa M, Kais S, Friedrich B. Supersymmetric factorization yields exact solutions to the molecular Stark-effect problem for "stretched" states. Physical Review A - Atomic, Molecular, and Optical Physics. 2011;83(4). doi:10.1103/PhysRevA.83.043415","chicago":"Lemeshko, Mikhail, Mustafa Mustafa, Sabre Kais, and Břetislav Friedrich. “Supersymmetric Factorization Yields Exact Solutions to the Molecular Stark-Effect Problem for "Stretched" States.” Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society, 2011. https://doi.org/10.1103/PhysRevA.83.043415.","mla":"Lemeshko, Mikhail, et al. “Supersymmetric Factorization Yields Exact Solutions to the Molecular Stark-Effect Problem for "Stretched" States.” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 83, no. 4, American Physical Society, 2011, doi:10.1103/PhysRevA.83.043415.","short":"M. Lemeshko, M. Mustafa, S. Kais, B. Friedrich, Physical Review A - Atomic, Molecular, and Optical Physics 83 (2011)."},"quality_controlled":0,"doi":"10.1103/PhysRevA.83.043415","date_published":"2011-04-25T00:00:00Z","day":"25","month":"04"},{"publisher":"American Physical Society","intvolume":" 83","publication_status":"published","status":"public","title":"Shaping interactions between polar molecules with far-off-resonant light","_id":"2198","year":"2011","volume":83,"date_created":"2018-12-11T11:56:17Z","date_updated":"2021-01-12T06:55:55Z","author":[{"first_name":"Mikhail","last_name":"Lemeshko","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6990-7802","full_name":"Mikhail Lemeshko"}],"type":"journal_article","extern":1,"publist_id":"4775","issue":"5","abstract":[{"text":"We show that dressing polar molecules with a far-off-resonant optical field leads to new types of intermolecular potentials, which undergo a crossover from the inverse power to oscillating behavior depending on the intermolecular distance, and whose parameters can be tuned by varying the laser intensity and wavelength. We present analytic expressions for the potential energy surfaces, thereby providing direct access to the parameters of an optical field required to design intermolecular interactions experimentally.","lang":"eng"}],"quality_controlled":0,"main_file_link":[{"url":"http://arxiv.org/abs/1104.1046","open_access":"1"}],"oa":1,"citation":{"apa":"Lemeshko, M. (2011). Shaping interactions between polar molecules with far-off-resonant light. Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society. https://doi.org/10.1103/PhysRevA.83.051402","ieee":"M. Lemeshko, “Shaping interactions between polar molecules with far-off-resonant light,” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 83, no. 5. American Physical Society, 2011.","ista":"Lemeshko M. 2011. Shaping interactions between polar molecules with far-off-resonant light. Physical Review A - Atomic, Molecular, and Optical Physics. 83(5).","ama":"Lemeshko M. Shaping interactions between polar molecules with far-off-resonant light. Physical Review A - Atomic, Molecular, and Optical Physics. 2011;83(5). doi:10.1103/PhysRevA.83.051402","chicago":"Lemeshko, Mikhail. “Shaping Interactions between Polar Molecules with Far-off-Resonant Light.” Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society, 2011. https://doi.org/10.1103/PhysRevA.83.051402.","short":"M. Lemeshko, Physical Review A - Atomic, Molecular, and Optical Physics 83 (2011).","mla":"Lemeshko, Mikhail. “Shaping Interactions between Polar Molecules with Far-off-Resonant Light.” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 83, no. 5, American Physical Society, 2011, doi:10.1103/PhysRevA.83.051402."},"publication":"Physical Review A - Atomic, Molecular, and Optical Physics","date_published":"2011-05-27T00:00:00Z","doi":"10.1103/PhysRevA.83.051402","day":"27","month":"05"},{"type":"review","extern":1,"abstract":[{"lang":"eng","text":"Soon, the genetic basis of most human Mendelian diseases will be solved. The next challenge will be to leverage this information to uncover basic mechanisms of disease and develop new therapies. To understand how this transformation is already beginning to unfold, we focus on the ciliopathies, a class of multi-organ diseases caused by disruption of the primary cilium. Through a convergence of data involving mutant gene discovery, proteomics, and cell biology, more than a dozen phenotypically distinguishable conditions are now united as ciliopathies. Sitting at the interface between simple and complex genetic conditions, these diseases provide clues to the future direction of human genetics."}],"publist_id":"4615","issue":"1","title":"Modeling human disease in humans: The ciliopathies","status":"public","publication_status":"published","publisher":"Cell Press","intvolume":" 147","year":"2011","_id":"2312","date_created":"2018-12-11T11:56:55Z","date_updated":"2019-04-26T07:22:10Z","volume":147,"author":[{"full_name":"Gaia Novarino","orcid":"0000-0002-7673-7178","id":"3E57A680-F248-11E8-B48F-1D18A9856A87","last_name":"Novarino","first_name":"Gaia"},{"first_name":"Naiara","last_name":"Akizu","full_name":"Akizu, Naiara"},{"last_name":"Gleeson","first_name":"Joseph","full_name":"Gleeson, Joseph G"}],"day":"01","month":"01","quality_controlled":0,"page":"70 - 79","publication":"Cell","citation":{"chicago":"Novarino, Gaia, Naiara Akizu, and Joseph Gleeson. “Modeling Human Disease in Humans: The Ciliopathies.” Cell. Cell Press, 2011. https://doi.org/10.1016/j.cell.2011.09.014.","short":"G. Novarino, N. Akizu, J. Gleeson, Cell 147 (2011) 70–79.","mla":"Novarino, Gaia, et al. “Modeling Human Disease in Humans: The Ciliopathies.” Cell, vol. 147, no. 1, Cell Press, 2011, pp. 70–79, doi:10.1016/j.cell.2011.09.014.","ieee":"G. Novarino, N. Akizu, and J. Gleeson, “Modeling human disease in humans: The ciliopathies,” Cell, vol. 147, no. 1. Cell Press, pp. 70–79, 2011.","apa":"Novarino, G., Akizu, N., & Gleeson, J. (2011). Modeling human disease in humans: The ciliopathies. Cell. Cell Press. https://doi.org/10.1016/j.cell.2011.09.014","ista":"Novarino G, Akizu N, Gleeson J. 2011. Modeling human disease in humans: The ciliopathies. Cell. 147(1), 70–79.","ama":"Novarino G, Akizu N, Gleeson J. Modeling human disease in humans: The ciliopathies. Cell. 2011;147(1):70-79. doi:10.1016/j.cell.2011.09.014"},"date_published":"2011-01-01T00:00:00Z","doi":"10.1016/j.cell.2011.09.014"},{"day":"26","month":"05","doi":"10.1142/9789814350365_0002","date_published":"2011-05-26T00:00:00Z","conference":{"name":"QMath: Mathematical Results in Quantum Physics"},"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1010.0737"}],"oa":1,"citation":{"mla":"Frank, Rupert, et al. Binding, Stability, and Non-Binding of Multi-Polaron Systems. World Scientific Publishing, 2011, pp. 21–32, doi:10.1142/9789814350365_0002.","short":"R. Frank, É. Lieb, R. Seiringer, L. Thomas, in:, World Scientific Publishing, 2011, pp. 21–32.","chicago":"Frank, Rupert, Élliott Lieb, Robert Seiringer, and Lawrence Thomas. “Binding, Stability, and Non-Binding of Multi-Polaron Systems,” 21–32. World Scientific Publishing, 2011. https://doi.org/10.1142/9789814350365_0002.","ama":"Frank R, Lieb É, Seiringer R, Thomas L. Binding, stability, and non-binding of multi-polaron systems. In: World Scientific Publishing; 2011:21-32. doi:10.1142/9789814350365_0002","ista":"Frank R, Lieb É, Seiringer R, Thomas L. 2011. Binding, stability, and non-binding of multi-polaron systems. QMath: Mathematical Results in Quantum Physics, 21–32.","apa":"Frank, R., Lieb, É., Seiringer, R., & Thomas, L. (2011). Binding, stability, and non-binding of multi-polaron systems (pp. 21–32). Presented at the QMath: Mathematical Results in Quantum Physics, World Scientific Publishing. https://doi.org/10.1142/9789814350365_0002","ieee":"R. Frank, É. Lieb, R. Seiringer, and L. Thomas, “Binding, stability, and non-binding of multi-polaron systems,” presented at the QMath: Mathematical Results in Quantum Physics, 2011, pp. 21–32."},"page":"21 - 32","quality_controlled":0,"publist_id":"4607","abstract":[{"lang":"eng","text":"The binding of polarons, or its absence, is an old and subtle topic. After defining the model we state some recent theorems of ours. First, the transition from many-body collapse to the existence of a thermodynamic limit for N polarons occurs precisely at U = 2α, where U is the electronic Coulomb repulsion and α is the polaron coupling constant. Second, if U is large enough, there is no multi-polaron binding of any kind. We also discuss the Pekar-Tomasevich approximation to the ground state energy, which is valid for large α. Finally, we derive exact results, not reported before, about the one-dimensional toy model introduced by E. P. Gross."}],"extern":1,"type":"conference","author":[{"full_name":"Frank, Rupert L","first_name":"Rupert","last_name":"Frank"},{"full_name":"Lieb, Élliott H","first_name":"Élliott","last_name":"Lieb"},{"full_name":"Robert Seiringer","first_name":"Robert","last_name":"Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6781-0521"},{"last_name":"Thomas","first_name":"Lawrence","full_name":"Thomas, Lawrence E"}],"date_created":"2018-12-11T11:56:58Z","date_updated":"2021-01-12T06:56:45Z","_id":"2320","year":"2011","publisher":"World Scientific Publishing","title":"Binding, stability, and non-binding of multi-polaron systems","publication_status":"published","status":"public"},{"month":"03","day":"31","doi":"10.1007/978-3-7643-9994-8_3","date_published":"2011-03-31T00:00:00Z","conference":{"name":"OTAMP: Operator Theory, Analysis and Mathematical Physics"},"page":"39 - 44","quality_controlled":0,"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/0903.2053"}],"oa":1,"citation":{"apa":"Frank, R., Laptev, A., & Seiringer, R. (2011). A sharp bound on eigenvalues of Schrödinger operators on the halfline with complex-valued potentials (Vol. 214, pp. 39–44). Presented at the OTAMP: Operator Theory, Analysis and Mathematical Physics, Springer. https://doi.org/10.1007/978-3-7643-9994-8_3","ieee":"R. Frank, A. Laptev, and R. Seiringer, “ A sharp bound on eigenvalues of Schrödinger operators on the halfline with complex-valued potentials,” presented at the OTAMP: Operator Theory, Analysis and Mathematical Physics, 2011, vol. 214, pp. 39–44.","ista":"Frank R, Laptev A, Seiringer R. 2011. A sharp bound on eigenvalues of Schrödinger operators on the halfline with complex-valued potentials. OTAMP: Operator Theory, Analysis and Mathematical Physics, Operator Theory: Advances and Applications, vol. 214, 39–44.","ama":"Frank R, Laptev A, Seiringer R. A sharp bound on eigenvalues of Schrödinger operators on the halfline with complex-valued potentials. In: Vol 214. Springer; 2011:39-44. doi:10.1007/978-3-7643-9994-8_3","chicago":"Frank, Rupert, Ari Laptev, and Robert Seiringer. “ A Sharp Bound on Eigenvalues of Schrödinger Operators on the Halfline with Complex-Valued Potentials,” 214:39–44. Springer, 2011. https://doi.org/10.1007/978-3-7643-9994-8_3.","short":"R. Frank, A. Laptev, R. Seiringer, in:, Springer, 2011, pp. 39–44.","mla":"Frank, Rupert, et al. A Sharp Bound on Eigenvalues of Schrödinger Operators on the Halfline with Complex-Valued Potentials. Vol. 214, Springer, 2011, pp. 39–44, doi:10.1007/978-3-7643-9994-8_3."},"extern":1,"publist_id":"4606","abstract":[{"text":"We derive a sharp bound on the location of non-positive eigenvalues of Schrödinger operators on the half-line with complex-valued potentials.","lang":"eng"}],"alternative_title":["Operator Theory: Advances and Applications"],"type":"conference","volume":214,"date_updated":"2021-01-12T06:56:46Z","date_created":"2018-12-11T11:56:59Z","author":[{"full_name":"Frank, Rupert L","last_name":"Frank","first_name":"Rupert"},{"full_name":"Laptev, Ari","last_name":"Laptev","first_name":"Ari"},{"last_name":"Seiringer","first_name":"Robert","orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","full_name":"Robert Seiringer"}],"publisher":"Springer","intvolume":" 214","publication_status":"published","status":"public","title":" A sharp bound on eigenvalues of Schrödinger operators on the halfline with complex-valued potentials","year":"2011","_id":"2321"},{"author":[{"orcid":"0000-0002-8314-0177","id":"35827D50-F248-11E8-B48F-1D18A9856A87","last_name":"Browning","first_name":"Timothy D","full_name":"Timothy Browning"}],"date_created":"2018-12-11T11:45:21Z","date_updated":"2021-01-12T06:56:49Z","volume":96,"_id":"233","acknowledgement":"EP/E053262/1\tEngineering and Physical Sciences Research Council","year":"2011","publication_status":"published","status":"public","title":"Power-free values of polynomials","publisher":"Birkhäuser","intvolume":" 96","abstract":[{"text":"For an irreducible polynomial in at most two variables the problem of representing power-free integers is investigated. ","lang":"eng"}],"issue":"2","publist_id":"7670","extern":1,"type":"journal_article","date_published":"2011-02-19T00:00:00Z","doi":"10.1007/s00013-011-0224-7","publication":"Archiv der Mathematik","citation":{"short":"T.D. Browning, Archiv Der Mathematik 96 (2011) 139–150.","mla":"Browning, Timothy D. “Power-Free Values of Polynomials.” Archiv Der Mathematik, vol. 96, no. 2, Birkhäuser, 2011, pp. 139–50, doi:10.1007/s00013-011-0224-7.","chicago":"Browning, Timothy D. “Power-Free Values of Polynomials.” Archiv Der Mathematik. Birkhäuser, 2011. https://doi.org/10.1007/s00013-011-0224-7.","ama":"Browning TD. Power-free values of polynomials. Archiv der Mathematik. 2011;96(2):139-150. doi:10.1007/s00013-011-0224-7","ieee":"T. D. Browning, “Power-free values of polynomials,” Archiv der Mathematik, vol. 96, no. 2. Birkhäuser, pp. 139–150, 2011.","apa":"Browning, T. D. (2011). Power-free values of polynomials. Archiv Der Mathematik. Birkhäuser. https://doi.org/10.1007/s00013-011-0224-7","ista":"Browning TD. 2011. Power-free values of polynomials. Archiv der Mathematik. 96(2), 139–150."},"quality_controlled":0,"page":"139 - 150","day":"19","month":"02"},{"issue":"3","publist_id":"7671","abstract":[{"lang":"eng","text":"We investigate the average order of the divisor function at values of binary cubic forms that are reducible over Q and discuss some applications."}],"extern":1,"type":"journal_article","author":[{"full_name":"Timothy Browning","id":"35827D50-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8314-0177","first_name":"Timothy D","last_name":"Browning"}],"volume":23,"date_updated":"2021-01-12T06:56:53Z","date_created":"2018-12-11T11:45:21Z","year":"2011","_id":"234","publisher":"Universite de Bordeaux","intvolume":" 23","title":"The divisor problem for binary cubic forms","status":"public","publication_status":"published","day":"01","month":"01","doi":"10.5802/jtnb.778","date_published":"2011-01-01T00:00:00Z","citation":{"mla":"Browning, Timothy D. “The Divisor Problem for Binary Cubic Forms.” Journal de Theorie Des Nombres de Bordeaux, vol. 23, no. 3, Universite de Bordeaux, 2011, pp. 579–602, doi:10.5802/jtnb.778.","short":"T.D. Browning, Journal de Theorie Des Nombres de Bordeaux 23 (2011) 579–602.","chicago":"Browning, Timothy D. “The Divisor Problem for Binary Cubic Forms.” Journal de Theorie Des Nombres de Bordeaux. Universite de Bordeaux, 2011. https://doi.org/10.5802/jtnb.778.","ama":"Browning TD. The divisor problem for binary cubic forms. Journal de Theorie des Nombres de Bordeaux. 2011;23(3):579-602. doi:10.5802/jtnb.778","ista":"Browning TD. 2011. The divisor problem for binary cubic forms. Journal de Theorie des Nombres de Bordeaux. 23(3), 579–602.","apa":"Browning, T. D. (2011). The divisor problem for binary cubic forms. Journal de Theorie Des Nombres de Bordeaux. Universite de Bordeaux. https://doi.org/10.5802/jtnb.778","ieee":"T. D. Browning, “The divisor problem for binary cubic forms,” Journal de Theorie des Nombres de Bordeaux, vol. 23, no. 3. Universite de Bordeaux, pp. 579–602, 2011."},"publication":"Journal de Theorie des Nombres de Bordeaux","page":"579 - 602","quality_controlled":0},{"date_published":"2011-07-01T00:00:00Z","language":[{"iso":"eng"}],"citation":{"chicago":"Browning, Timothy D, and Christian Elsholtz. “The Number of Representations of Rationals as a Sum of Unit Fractions.” Illinois Journal of Mathematics. University of Illinois Press, 2011.","mla":"Browning, Timothy D., and Christian Elsholtz. “The Number of Representations of Rationals as a Sum of Unit Fractions.” Illinois Journal of Mathematics, vol. 55, no. 2, University of Illinois Press, 2011, pp. 685–96.","short":"T.D. Browning, C. Elsholtz, Illinois Journal of Mathematics 55 (2011) 685–696.","ista":"Browning TD, Elsholtz C. 2011. The number of representations of rationals as a sum of unit fractions. Illinois Journal of Mathematics. 55(2), 685–696.","apa":"Browning, T. D., & Elsholtz, C. (2011). The number of representations of rationals as a sum of unit fractions. Illinois Journal of Mathematics. University of Illinois Press.","ieee":"T. D. Browning and C. Elsholtz, “The number of representations of rationals as a sum of unit fractions,” Illinois Journal of Mathematics, vol. 55, no. 2. University of Illinois Press, pp. 685–696, 2011.","ama":"Browning TD, Elsholtz C. The number of representations of rationals as a sum of unit fractions. Illinois Journal of Mathematics. 2011;55(2):685-696."},"publication":"Illinois Journal of Mathematics","page":"685 - 696","article_type":"original","quality_controlled":"1","article_processing_charge":"No","month":"07","day":"01","author":[{"full_name":"Browning, Timothy D","first_name":"Timothy D","last_name":"Browning","id":"35827D50-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8314-0177"},{"full_name":"Elsholtz, Christian","last_name":"Elsholtz","first_name":"Christian"}],"oa_version":"None","volume":55,"date_created":"2018-12-11T11:45:21Z","date_updated":"2021-01-12T06:56:57Z","_id":"235","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2011","intvolume":" 55","publisher":"University of Illinois Press","publication_status":"published","status":"public","title":"The number of representations of rationals as a sum of unit fractions","publist_id":"7669","issue":"2","abstract":[{"text":"For given positive integers m and n, we consider the frequency of representations of m/n as a sum of unit fractions.","lang":"eng"}],"extern":"1","type":"journal_article"},{"day":"27","month":"09","date_published":"2011-09-27T00:00:00Z","doi":"10.1215/00127094-1443466","page":"1 - 69","quality_controlled":0,"citation":{"chicago":"De La Bretèche, Régis, and Timothy D Browning. “Manin’s Conjecture for Quartic Del Pezzo Surfaces with a Conic Fibration.” Duke Mathematical Journal. Duke University Press, 2011. https://doi.org/10.1215/00127094-1443466.","short":"R. De La Bretèche, T.D. Browning, Duke Mathematical Journal 160 (2011) 1–69.","mla":"De La Bretèche, Régis, and Timothy D. Browning. “Manin’s Conjecture for Quartic Del Pezzo Surfaces with a Conic Fibration.” Duke Mathematical Journal, vol. 160, no. 1, Duke University Press, 2011, pp. 1–69, doi:10.1215/00127094-1443466.","ieee":"R. De La Bretèche and T. D. Browning, “Manin’s conjecture for quartic Del Pezzo surfaces with a conic fibration,” Duke Mathematical Journal, vol. 160, no. 1. Duke University Press, pp. 1–69, 2011.","apa":"De La Bretèche, R., & Browning, T. D. (2011). Manin’s conjecture for quartic Del Pezzo surfaces with a conic fibration. Duke Mathematical Journal. Duke University Press. https://doi.org/10.1215/00127094-1443466","ista":"De La Bretèche R, Browning TD. 2011. Manin’s conjecture for quartic Del Pezzo surfaces with a conic fibration. Duke Mathematical Journal. 160(1), 1–69.","ama":"De La Bretèche R, Browning TD. Manin’s conjecture for quartic Del Pezzo surfaces with a conic fibration. Duke Mathematical Journal. 2011;160(1):1-69. doi:10.1215/00127094-1443466"},"publication":"Duke Mathematical Journal","extern":1,"issue":"1","publist_id":"7668","abstract":[{"lang":"eng","text":"An asymptotic formula is established for the number of Q-rational points of bounded height on a nonsingular quartic Del Pezzo surface with a conic bundle structure."}],"type":"journal_article","volume":160,"date_updated":"2021-01-12T06:57:00Z","date_created":"2018-12-11T11:45:21Z","author":[{"full_name":"de la Bretèche, Régis","last_name":"De La Bretèche","first_name":"Régis"},{"full_name":"Timothy Browning","first_name":"Timothy D","last_name":"Browning","id":"35827D50-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8314-0177"}],"intvolume":" 160","publisher":"Duke University Press","title":"Manin's conjecture for quartic Del Pezzo surfaces with a conic fibration","status":"public","publication_status":"published","_id":"236","acknowledgement":"EP/E053262/1\tEngineering and Physical Sciences Research Council","year":"2011"},{"date_published":"2011-06-01T00:00:00Z","doi":"10.1007/s10240-011-0031-5","page":"39 - 67","quality_controlled":0,"citation":{"ista":"Frank R, Lieb É, Seiringer R, Thomas L. 2011. Stability and absence of binding for multi-polaron systems. Publications Mathematiques de l Institut des Hautes Etudes Scientifiques. 113(1), 39–67.","ieee":"R. Frank, É. Lieb, R. Seiringer, and L. Thomas, “Stability and absence of binding for multi-polaron systems,” Publications Mathematiques de l Institut des Hautes Etudes Scientifiques, vol. 113, no. 1. Springer, pp. 39–67, 2011.","apa":"Frank, R., Lieb, É., Seiringer, R., & Thomas, L. (2011). Stability and absence of binding for multi-polaron systems. Publications Mathematiques de l Institut Des Hautes Etudes Scientifiques. Springer. https://doi.org/10.1007/s10240-011-0031-5","ama":"Frank R, Lieb É, Seiringer R, Thomas L. Stability and absence of binding for multi-polaron systems. Publications Mathematiques de l Institut des Hautes Etudes Scientifiques. 2011;113(1):39-67. doi:10.1007/s10240-011-0031-5","chicago":"Frank, Rupert, Élliott Lieb, Robert Seiringer, and Lawrence Thomas. “Stability and Absence of Binding for Multi-Polaron Systems.” Publications Mathematiques de l Institut Des Hautes Etudes Scientifiques. Springer, 2011. https://doi.org/10.1007/s10240-011-0031-5.","mla":"Frank, Rupert, et al. “Stability and Absence of Binding for Multi-Polaron Systems.” Publications Mathematiques de l Institut Des Hautes Etudes Scientifiques, vol. 113, no. 1, Springer, 2011, pp. 39–67, doi:10.1007/s10240-011-0031-5.","short":"R. Frank, É. Lieb, R. Seiringer, L. Thomas, Publications Mathematiques de l Institut Des Hautes Etudes Scientifiques 113 (2011) 39–67."},"oa":1,"main_file_link":[{"url":"http://arxiv.org/abs/1004.4892","open_access":"1"}],"publication":"Publications Mathematiques de l Institut des Hautes Etudes Scientifiques","day":"01","month":"06","volume":113,"date_updated":"2021-01-12T06:57:12Z","date_created":"2018-12-11T11:57:23Z","author":[{"first_name":"Rupert","last_name":"Frank","full_name":"Frank, Rupert L"},{"full_name":"Lieb, Élliott H","first_name":"Élliott","last_name":"Lieb"},{"orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","last_name":"Seiringer","first_name":"Robert","full_name":"Robert Seiringer"},{"first_name":"Lawrence","last_name":"Thomas","full_name":"Thomas, Lawrence E"}],"publisher":"Springer","intvolume":" 113","publication_status":"published","title":"Stability and absence of binding for multi-polaron systems","status":"public","year":"2011","_id":"2390","extern":1,"publist_id":"4534","issue":"1","abstract":[{"text":"We resolve several longstanding problems concerning the stability and the absence of multi-particle binding for N≥2 polarons. Fröhlich's 1937 polaron model describes non-relativistic particles interacting with a scalar quantized field with coupling √α, and with each other by Coulomb repulsion of strength U. We prove the following: (i) While there is a known thermodynamic instability for U<2α, stability of matter does hold for U>2α, that is, the ground state energy per particle has a finite limit as N→∞. (ii) There is no binding of any kind if U exceeds a critical value that depends on α but not on N. The same results are shown to hold for the Pekar-Tomasevich model.","lang":"eng"}],"type":"journal_article"},{"day":"01","month":"01","quality_controlled":0,"main_file_link":[{"url":"http://arxiv.org/abs/1102.1414","open_access":"1"}],"oa":1,"citation":{"ama":"Frank R, Lewin M, Lieb É, Seiringer R. Energy cost to make a hole in the fermi sea. Physical Review Letters. 2011;106(15). doi:10.1103/PhysRevLett.106.150402","ista":"Frank R, Lewin M, Lieb É, Seiringer R. 2011. Energy cost to make a hole in the fermi sea. Physical Review Letters. 106(15).","ieee":"R. Frank, M. Lewin, É. Lieb, and R. Seiringer, “Energy cost to make a hole in the fermi sea,” Physical Review Letters, vol. 106, no. 15. American Physical Society, 2011.","apa":"Frank, R., Lewin, M., Lieb, É., & Seiringer, R. (2011). Energy cost to make a hole in the fermi sea. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.106.150402","mla":"Frank, Rupert, et al. “Energy Cost to Make a Hole in the Fermi Sea.” Physical Review Letters, vol. 106, no. 15, American Physical Society, 2011, doi:10.1103/PhysRevLett.106.150402.","short":"R. Frank, M. Lewin, É. Lieb, R. Seiringer, Physical Review Letters 106 (2011).","chicago":"Frank, Rupert, Mathieu Lewin, Élliott Lieb, and Robert Seiringer. “Energy Cost to Make a Hole in the Fermi Sea.” Physical Review Letters. American Physical Society, 2011. https://doi.org/10.1103/PhysRevLett.106.150402."},"publication":"Physical Review Letters","date_published":"2011-01-01T00:00:00Z","doi":"10.1103/PhysRevLett.106.150402","type":"journal_article","extern":1,"issue":"15","publist_id":"4535","abstract":[{"lang":"eng","text":"The change in energy of an ideal Fermi gas when a local one-body potential is inserted into the system, or when the density is changed locally, are important quantities in condensed matter physics. We show that they can be rigorously bounded from below by a universal constant times the value given by the semiclassical approximation."}],"intvolume":" 106","publisher":"American Physical Society","title":"Energy cost to make a hole in the fermi sea","status":"public","publication_status":"published","year":"2011","_id":"2391","volume":106,"date_created":"2018-12-11T11:57:24Z","date_updated":"2021-01-12T06:57:12Z","author":[{"last_name":"Frank","first_name":"Rupert","full_name":"Frank, Rupert L"},{"full_name":"Lewin, Mathieu","first_name":"Mathieu","last_name":"Lewin"},{"last_name":"Lieb","first_name":"Élliott","full_name":"Lieb, Élliott H"},{"full_name":"Robert Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6781-0521","first_name":"Robert","last_name":"Seiringer"}]},{"month":"03","day":"06","doi":"10.1007/s00208-011-0651-6","date_published":"2011-03-06T00:00:00Z","publication":"Mathematische Annalen","citation":{"ista":"Browning TD, Dietmann R, Elliott P. 2011. Least zero of a cubic form. Mathematische Annalen. 352(3), 745–778.","ieee":"T. D. Browning, R. Dietmann, and P. Elliott, “Least zero of a cubic form,” Mathematische Annalen, vol. 352, no. 3. Springer, pp. 745–778, 2011.","apa":"Browning, T. D., Dietmann, R., & Elliott, P. (2011). Least zero of a cubic form. Mathematische Annalen. Springer. https://doi.org/10.1007/s00208-011-0651-6","ama":"Browning TD, Dietmann R, Elliott P. Least zero of a cubic form. Mathematische Annalen. 2011;352(3):745-778. doi:10.1007/s00208-011-0651-6","chicago":"Browning, Timothy D, Rainer Dietmann, and Peter Elliott. “Least Zero of a Cubic Form.” Mathematische Annalen. Springer, 2011. https://doi.org/10.1007/s00208-011-0651-6.","mla":"Browning, Timothy D., et al. “Least Zero of a Cubic Form.” Mathematische Annalen, vol. 352, no. 3, Springer, 2011, pp. 745–78, doi:10.1007/s00208-011-0651-6.","short":"T.D. Browning, R. Dietmann, P. Elliott, Mathematische Annalen 352 (2011) 745–778."},"quality_controlled":0,"page":"745 - 778","abstract":[{"text":"An effective search bound is established for the least non-trivial integer zero of an arbitrary cubic form C ε ℤ[X 1,...,X n], provided that n ≥ 17.","lang":"eng"}],"publist_id":"7665","issue":"3","extern":1,"type":"journal_article","author":[{"full_name":"Timothy Browning","last_name":"Browning","first_name":"Timothy D","orcid":"0000-0002-8314-0177","id":"35827D50-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Dietmann","first_name":"Rainer","full_name":"Dietmann, Rainer"},{"last_name":"Elliott","first_name":"Peter","full_name":"Elliott, Peter"}],"date_created":"2018-12-11T11:45:22Z","date_updated":"2021-01-12T06:57:11Z","volume":352,"year":"2011","_id":"239","acknowledgement":"EP/E053262/1\tEngineering and Physical Sciences Research Council","status":"public","publication_status":"published","title":"Least zero of a cubic form","publisher":"Springer","intvolume":" 352"},{"type":"journal_article","issue":"2","publist_id":"4533","abstract":[{"text":"We investigate the low energy excitation spectrum of a Bose gas with weak, long range repulsive interactions. In particular, we prove that the Bogoliubov spectrum of elementary excitations with linear dispersion relation for small momentum becomes exact in the mean-field limit.","lang":"eng"}],"extern":1,"year":"2011","_id":"2393","intvolume":" 306","publisher":"Springer","publication_status":"published","title":"The excitation spectrum for weakly interacting Bosons","status":"public","author":[{"full_name":"Robert Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6781-0521","first_name":"Robert","last_name":"Seiringer"}],"volume":306,"date_created":"2018-12-11T11:57:24Z","date_updated":"2021-01-12T06:57:13Z","day":"01","month":"09","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1008.5349"}],"citation":{"ista":"Seiringer R. 2011. The excitation spectrum for weakly interacting Bosons. Communications in Mathematical Physics. 306(2), 565–578.","ieee":"R. Seiringer, “The excitation spectrum for weakly interacting Bosons,” Communications in Mathematical Physics, vol. 306, no. 2. Springer, pp. 565–578, 2011.","apa":"Seiringer, R. (2011). The excitation spectrum for weakly interacting Bosons. Communications in Mathematical Physics. Springer. https://doi.org/10.1007/s00220-011-1261-6","ama":"Seiringer R. The excitation spectrum for weakly interacting Bosons. Communications in Mathematical Physics. 2011;306(2):565-578. doi:10.1007/s00220-011-1261-6","chicago":"Seiringer, Robert. “The Excitation Spectrum for Weakly Interacting Bosons.” Communications in Mathematical Physics. Springer, 2011. https://doi.org/10.1007/s00220-011-1261-6.","mla":"Seiringer, Robert. “The Excitation Spectrum for Weakly Interacting Bosons.” Communications in Mathematical Physics, vol. 306, no. 2, Springer, 2011, pp. 565–78, doi:10.1007/s00220-011-1261-6.","short":"R. Seiringer, Communications in Mathematical Physics 306 (2011) 565–578."},"oa":1,"publication":"Communications in Mathematical Physics","page":"565 - 578","quality_controlled":0,"doi":"10.1007/s00220-011-1261-6","date_published":"2011-09-01T00:00:00Z"},{"extern":1,"publist_id":"4470","issue":"2","abstract":[{"lang":"eng","text":"Let EMBEDk→d be the following algorithmic problem: Given a finite simplicial complex K of dimension at most k, does there exist a (piecewise linear) embedding of K into Rd? Known results easily imply the polynomiality of EMBEDk→2 (k = 1; 2; the case k = 1, d = 2 is graph planarity) and of EMBEDk→2k for all k ≥ 3. We show that the celebrated result of Novikov on the algorithmic unsolvability of recognizing the 5-sphere implies that EMBEDd→d and EMBED (d-1)→d are undecidable for each d ≥ 5. Our main result is the NP-hardness of EMBED2→4 and, more generally, of EMBED k→d for all k; d with d ≥ 4 and d ≥ k ≥ (2d - 2)/3. These dimensions fall outside the metastable range of a theorem of Haefliger and Weber, which characterizes embeddability using the deleted product obstruction. Our reductions are based on examples, due to Segal, Spież, Freedman, Krushkal, Teichner, and Skopenkov, showing that outside the metastable range the deleted product obstruction is not sufficient to characterize embeddability. "}],"type":"journal_article","volume":13,"date_created":"2018-12-11T11:57:39Z","date_updated":"2021-01-12T06:57:28Z","author":[{"last_name":"Matoušek","first_name":"Jiří","full_name":"Matoušek, Jiří"},{"full_name":"Martin Tancer","id":"38AC689C-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1191-6714","first_name":"Martin","last_name":"Tancer"},{"full_name":"Uli Wagner","first_name":"Uli","last_name":"Wagner","id":"36690CA2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1494-0568"}],"intvolume":" 13","publisher":"European Mathematical Society","title":"Hardness of embedding simplicial complexes in Rd","publication_status":"published","status":"public","_id":"2436","year":"2011","acknowledgement":"We would like to thank Colin Rourke for explanations concerning PL topology and for examples showing the difference between PL embeddability and topological embeddability\nmentioned in Section 2. We also thank Michael Joswig, Gil Kalai, Frank Lutz, Alexander Nabutovsky, and Robin Thomas for kindly answering our questions. The second author would also like to thank Sergio Cabello for helpful discussions regarding linear-time algorithms for EMBED2!2.\nFinally, we are grateful to two anonymous referees for careful reading and valuable suggestions.\nResearch of U.Wagner was supported by the Swiss National Science Foundation (SNF Projects\n200021-116741 and 200021-125309).","day":"01","month":"01","doi":"10.4171/JEMS/252","date_published":"2011-01-01T00:00:00Z","page":"259 - 295","quality_controlled":0,"citation":{"short":"J. Matoušek, M. Tancer, U. Wagner, Journal of the European Mathematical Society 13 (2011) 259–295.","mla":"Matoušek, Jiří, et al. “Hardness of Embedding Simplicial Complexes in Rd.” Journal of the European Mathematical Society, vol. 13, no. 2, European Mathematical Society, 2011, pp. 259–95, doi:10.4171/JEMS/252.","chicago":"Matoušek, Jiří, Martin Tancer, and Uli Wagner. “Hardness of Embedding Simplicial Complexes in Rd.” Journal of the European Mathematical Society. European Mathematical Society, 2011. https://doi.org/10.4171/JEMS/252.","ama":"Matoušek J, Tancer M, Wagner U. Hardness of embedding simplicial complexes in Rd. Journal of the European Mathematical Society. 2011;13(2):259-295. doi:10.4171/JEMS/252","ieee":"J. Matoušek, M. Tancer, and U. Wagner, “Hardness of embedding simplicial complexes in Rd,” Journal of the European Mathematical Society, vol. 13, no. 2. European Mathematical Society, pp. 259–295, 2011.","apa":"Matoušek, J., Tancer, M., & Wagner, U. (2011). Hardness of embedding simplicial complexes in Rd. Journal of the European Mathematical Society. European Mathematical Society. https://doi.org/10.4171/JEMS/252","ista":"Matoušek J, Tancer M, Wagner U. 2011. Hardness of embedding simplicial complexes in Rd. Journal of the European Mathematical Society. 13(2), 259–295."},"publication":"Journal of the European Mathematical Society"},{"conference":{"name":"SGC: Symposuim on Computational Geometry"},"date_published":"2011-01-01T00:00:00Z","doi":"10.1145/1998196.1998256","quality_controlled":0,"page":"351 - 360","citation":{"ista":"Wagner U. 2011. Minors in random and expanding hypergraphs. SGC: Symposuim on Computational Geometry, 351–360.","ieee":"U. Wagner, “Minors in random and expanding hypergraphs,” presented at the SGC: Symposuim on Computational Geometry, 2011, pp. 351–360.","apa":"Wagner, U. (2011). Minors in random and expanding hypergraphs (pp. 351–360). Presented at the SGC: Symposuim on Computational Geometry, ACM. https://doi.org/10.1145/1998196.1998256","ama":"Wagner U. Minors in random and expanding hypergraphs. In: ACM; 2011:351-360. doi:10.1145/1998196.1998256","chicago":"Wagner, Uli. “Minors in Random and Expanding Hypergraphs,” 351–60. ACM, 2011. https://doi.org/10.1145/1998196.1998256.","mla":"Wagner, Uli. Minors in Random and Expanding Hypergraphs. ACM, 2011, pp. 351–60, doi:10.1145/1998196.1998256.","short":"U. Wagner, in:, ACM, 2011, pp. 351–360."},"day":"01","month":"01","date_created":"2018-12-11T11:57:39Z","date_updated":"2021-01-12T06:57:29Z","author":[{"full_name":"Uli Wagner","orcid":"0000-0002-1494-0568","id":"36690CA2-F248-11E8-B48F-1D18A9856A87","last_name":"Wagner","first_name":"Uli"}],"title":"Minors in random and expanding hypergraphs","publication_status":"published","status":"public","publisher":"ACM","_id":"2437","year":"2011","extern":1,"abstract":[{"text":"We introduce a new notion of minors for simplicial complexes (hypergraphs), so-called homological minors. Our motivation is to propose a general approach to attack certain extremal problems for sparse simplicial complexes and the corresponding threshold problems for random complexes. In this paper, we focus on threshold problems. The basic model for random complexes is the Linial-Meshulam model Xk(n, p). By definition, such a complex has n vertices, a complete (k -1)-dimensional skeleton, and every possible k-dimensional simplex is chosen independently with probability p. We show that for every k, t≥ 1, there is a constant C = C(k, t) such that for p≥ C/n, the random complex Xk(n, p) asymptotically almost surely contains K tk (the complete k-dimensional complex on t vertices) as a homological minor. As corollary, the threshold for (topological) embeddability of Xk(n, p) into R2k is at p = θ(1/n). The method can be extended to other models of random complexes (for which the lower skeleta are not necessarily complete) and also to more general Tverberg-type problems, where instead of continuous maps without doubly covered image points (embeddings), we consider maps without qfold covered image points.","lang":"eng"}],"publist_id":"4469","type":"conference"},{"type":"journal_article","abstract":[{"text":"Within a multicellular tissue cells may coordinately form a singular or multiple polar axes, but it is unclear whether a common mechanism governs different types of polar axis formation. The phosphorylation status of PIN proteins, which is directly affected by the PINOID (PID) protein kinase and the PP2A protein phosphatase, is known to regulate the apical-basal polarity of PIN localization in bipolar cells of roots and shoot apices. Here, we provide evidence that the phosphorylation status-mediated PIN polarity switch is widely used to modulate cellular processes in Arabidopsis including multipolar pavement cells (PC) with interdigitated lobes and indentations. The degree of PC interdigitation was greatly reduced either when the FYPP1 gene, which encodes a PP2A called phytochrome-associated serine/threonine protein phosphatase, was knocked out or when the PID gene was overexpressed (35S:PID). These genetic modifications caused PIN1 localization to switch from lobe to indentation regions. The PP2A and PID mediated switching of PIN1 localization is strikingly similar to their regulation of the apical-basal polarity switch of PIN proteins in other cells. Our findings suggest a common mechanism for the regulation of PIN1 polarity formation, a fundamental cellular process that is crucial for pattern formation both at the tissue/organ and cellular levels.","lang":"eng"}],"publist_id":"4449","issue":"6","extern":1,"_id":"2454","year":"2011","status":"public","title":"Phosphorylation switch modulates the interdigitated pattern of PIN1 localization and cell expansion in Arabidopsis leaf epidermis","publication_status":"published","publisher":"Nature Publishing Group","intvolume":" 21","author":[{"full_name":"Hongjiang Li","first_name":"Hongjiang","last_name":"Li","id":"33CA54A6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5039-9660"},{"first_name":"Deshu","last_name":"Lin","full_name":"Lin, Deshu"},{"full_name":"Dhonukshe, Pankaj B","last_name":"Dhonukshe","first_name":"Pankaj"},{"first_name":"Shingo","last_name":"Nagawa","full_name":"Nagawa, Shingo"},{"first_name":"Dandan","last_name":"Chen","full_name":"Chen, Dandan"},{"full_name":"Jirí Friml","first_name":"Jirí","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596"},{"last_name":"Scheres","first_name":"Ben","full_name":"Scheres, Ben"},{"full_name":"Guo, Hongwei","first_name":"Hongwei","last_name":"Guo"},{"full_name":"Yang, Zhenbiao","last_name":"Yang","first_name":"Zhenbiao"}],"date_created":"2018-12-11T11:57:45Z","date_updated":"2021-01-12T06:57:35Z","volume":21,"day":"01","month":"06","publication":"Cell Research","oa":1,"citation":{"short":"H. Li, D. Lin, P. Dhonukshe, S. Nagawa, D. Chen, J. Friml, B. Scheres, H. Guo, Z. Yang, Cell Research 21 (2011) 970–978.","mla":"Li, Hongjiang, et al. “Phosphorylation Switch Modulates the Interdigitated Pattern of PIN1 Localization and Cell Expansion in Arabidopsis Leaf Epidermis.” Cell Research, vol. 21, no. 6, Nature Publishing Group, 2011, pp. 970–78, doi:10.1038/cr.2011.49.","chicago":"Li, Hongjiang, Deshu Lin, Pankaj Dhonukshe, Shingo Nagawa, Dandan Chen, Jiří Friml, Ben Scheres, Hongwei Guo, and Zhenbiao Yang. “Phosphorylation Switch Modulates the Interdigitated Pattern of PIN1 Localization and Cell Expansion in Arabidopsis Leaf Epidermis.” Cell Research. Nature Publishing Group, 2011. https://doi.org/10.1038/cr.2011.49.","ama":"Li H, Lin D, Dhonukshe P, et al. Phosphorylation switch modulates the interdigitated pattern of PIN1 localization and cell expansion in Arabidopsis leaf epidermis. Cell Research. 2011;21(6):970-978. doi:10.1038/cr.2011.49","ieee":"H. Li et al., “Phosphorylation switch modulates the interdigitated pattern of PIN1 localization and cell expansion in Arabidopsis leaf epidermis,” Cell Research, vol. 21, no. 6. Nature Publishing Group, pp. 970–978, 2011.","apa":"Li, H., Lin, D., Dhonukshe, P., Nagawa, S., Chen, D., Friml, J., … Yang, Z. (2011). Phosphorylation switch modulates the interdigitated pattern of PIN1 localization and cell expansion in Arabidopsis leaf epidermis. Cell Research. Nature Publishing Group. https://doi.org/10.1038/cr.2011.49","ista":"Li H, Lin D, Dhonukshe P, Nagawa S, Chen D, Friml J, Scheres B, Guo H, Yang Z. 2011. Phosphorylation switch modulates the interdigitated pattern of PIN1 localization and cell expansion in Arabidopsis leaf epidermis. Cell Research. 21(6), 970–978."},"main_file_link":[{"open_access":"1","url":"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3203702/"}],"quality_controlled":0,"page":"970 - 978","doi":"10.1038/cr.2011.49","date_published":"2011-06-01T00:00:00Z"},{"month":"12","day":"01","doi":"10.1016/j.ceb.2011.09.006","date_published":"2011-12-01T00:00:00Z","language":[{"iso":"eng"}],"citation":{"mla":"Dettmer, Jan, and Jiří Friml. “Cell Polarity in Plants: When Two Do the Same, It Is Not the Same...” Current Opinion in Cell Biology, vol. 23, no. 6, Elsevier, 2011, pp. 686–96, doi:10.1016/j.ceb.2011.09.006.","short":"J. Dettmer, J. Friml, Current Opinion in Cell Biology 23 (2011) 686–696.","chicago":"Dettmer, Jan, and Jiří Friml. “Cell Polarity in Plants: When Two Do the Same, It Is Not the Same...” Current Opinion in Cell Biology. Elsevier, 2011. https://doi.org/10.1016/j.ceb.2011.09.006.","ama":"Dettmer J, Friml J. Cell polarity in plants: When two do the same, it is not the same... Current Opinion in Cell Biology. 2011;23(6):686-696. doi:10.1016/j.ceb.2011.09.006","ista":"Dettmer J, Friml J. 2011. Cell polarity in plants: When two do the same, it is not the same... Current Opinion in Cell Biology. 23(6), 686–696.","apa":"Dettmer, J., & Friml, J. (2011). Cell polarity in plants: When two do the same, it is not the same... Current Opinion in Cell Biology. Elsevier. https://doi.org/10.1016/j.ceb.2011.09.006","ieee":"J. Dettmer and J. Friml, “Cell polarity in plants: When two do the same, it is not the same...,” Current Opinion in Cell Biology, vol. 23, no. 6. Elsevier, pp. 686–696, 2011."},"publication":"Current Opinion in Cell Biology","page":"686 - 696","quality_controlled":"1","publist_id":"4443","issue":"6","abstract":[{"lang":"eng","text":"In unicellular and multicellular organisms, cell polarity is essential for a wide range of biological processes. An important feature of cell polarity is the asymmetric distribution of proteins in or at the plasma membrane. In plants such polar localized proteins play various specific roles ranging from organizing cell morphogenesis, asymmetric cell division, pathogen defense, nutrient transport and establishment of hormone gradients for developmental patterning. Moreover, flexible respecification of cell polarities enables plants to adjust their physiology and development to environmental changes. Having evolved multicellularity independently and lacking major cell polarity mechanisms of animal cells, plants came up with alternative solutions to generate and respecify cell polarity as well as to regulate polar domains at the plasma membrane."}],"extern":"1","type":"journal_article","author":[{"full_name":"Dettmer, Jan","first_name":"Jan","last_name":"Dettmer"},{"full_name":"Friml, Jirí","first_name":"Jirí","last_name":"Friml","id":"4159519E-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8302-7596"}],"volume":23,"oa_version":"None","date_updated":"2021-01-12T06:57:37Z","date_created":"2018-12-11T11:57:47Z","_id":"2460","year":"2011","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","intvolume":" 23","publisher":"Elsevier","title":"Cell polarity in plants: When two do the same, it is not the same...","status":"public","publication_status":"published"},{"date_created":"2018-12-11T11:58:06Z","date_updated":"2021-01-12T06:57:56Z","volume":14,"author":[{"first_name":"Savio","last_name":"Chan","full_name":"Chan, Savio"},{"first_name":"Kelly","last_name":"Glajch","full_name":"Glajch, Kelly E"},{"first_name":"Tracy","last_name":"Gertler","full_name":"Gertler, Tracy S"},{"full_name":"Guzmán, Jaime N","first_name":"Jaime","last_name":"Guzmán"},{"first_name":"Jeff","last_name":"Mercer","full_name":"Mercer, Jeff N"},{"first_name":"Alan","last_name":"Lewis","full_name":"Lewis, Alan S"},{"first_name":"Alan","last_name":"Goldberg","full_name":"Goldberg, Alan B"},{"first_name":"Tatiana","last_name":"Tkatch","full_name":"Tkatch, Tatiana"},{"id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8761-9444","first_name":"Ryuichi","last_name":"Shigemoto","full_name":"Ryuichi Shigemoto"},{"full_name":"Fleming, Sheila M","first_name":"Sheila","last_name":"Fleming"},{"last_name":"Chetkovich","first_name":"Dane","full_name":"Chetkovich, Dane M"},{"first_name":"Pavel","last_name":"Osten","full_name":"Osten, Pavel"},{"first_name":"Hitoshi","last_name":"Kita","full_name":"Kita, Hitoshi"},{"first_name":"James","last_name":"Surmeier","full_name":"Surmeier, James D"}],"status":"public","title":"HCN channelopathy in external globus pallidus neurons in models of Parkinson s disease","publication_status":"published","intvolume":" 14","publisher":"Nature Publishing Group","_id":"2511","year":"2011","extern":1,"abstract":[{"lang":"eng","text":"Parkinson's disease is a common neurodegenerative disorder characterized by a profound motor disability that is traceable to the emergence of synchronous, rhythmic spiking in neurons of the external segment of the globus pallidus (GPe). The origins of this pathophysiology are poorly defined for the generation of pacemaking. After the induction of a parkinsonian state in mice, there was a progressive decline in autonomous GPe pacemaking, which normally serves to desynchronize activity. The loss was attributable to the downregulation of an ion channel that is essential in pacemaking, the hyperpolarization and cyclic nucleotide-gated (HCN) channel. Viral delivery of HCN2 subunits restored pacemaking and reduced burst spiking in GPe neurons. However, the motor disability induced by dopamine (DA) depletion was not reversed, suggesting that the loss of pacemaking was a consequence, rather than a cause, of key network pathophysiology, a conclusion that is consistent with the ability of L-type channel antagonists to attenuate silencing after DA depletion."}],"issue":"1","publist_id":"4390","type":"journal_article","doi":"10.1038/nn.2692","date_published":"2011-01-01T00:00:00Z","quality_controlled":0,"page":"85 - 94","publication":"Nature Neuroscience","citation":{"mla":"Chan, Savio, et al. “HCN Channelopathy in External Globus Pallidus Neurons in Models of Parkinson s Disease.” Nature Neuroscience, vol. 14, no. 1, Nature Publishing Group, 2011, pp. 85–94, doi:10.1038/nn.2692.","short":"S. Chan, K. Glajch, T. Gertler, J. Guzmán, J. Mercer, A. Lewis, A. Goldberg, T. Tkatch, R. Shigemoto, S. Fleming, D. Chetkovich, P. Osten, H. Kita, J. Surmeier, Nature Neuroscience 14 (2011) 85–94.","chicago":"Chan, Savio, Kelly Glajch, Tracy Gertler, Jaime Guzmán, Jeff Mercer, Alan Lewis, Alan Goldberg, et al. “HCN Channelopathy in External Globus Pallidus Neurons in Models of Parkinson s Disease.” Nature Neuroscience. Nature Publishing Group, 2011. https://doi.org/10.1038/nn.2692.","ama":"Chan S, Glajch K, Gertler T, et al. HCN channelopathy in external globus pallidus neurons in models of Parkinson s disease. Nature Neuroscience. 2011;14(1):85-94. doi:10.1038/nn.2692","ista":"Chan S, Glajch K, Gertler T, Guzmán J, Mercer J, Lewis A, Goldberg A, Tkatch T, Shigemoto R, Fleming S, Chetkovich D, Osten P, Kita H, Surmeier J. 2011. HCN channelopathy in external globus pallidus neurons in models of Parkinson s disease. Nature Neuroscience. 14(1), 85–94.","ieee":"S. Chan et al., “HCN channelopathy in external globus pallidus neurons in models of Parkinson s disease,” Nature Neuroscience, vol. 14, no. 1. Nature Publishing Group, pp. 85–94, 2011.","apa":"Chan, S., Glajch, K., Gertler, T., Guzmán, J., Mercer, J., Lewis, A., … Surmeier, J. (2011). HCN channelopathy in external globus pallidus neurons in models of Parkinson s disease. Nature Neuroscience. Nature Publishing Group. https://doi.org/10.1038/nn.2692"},"month":"01","day":"01"},{"day":"20","month":"04","date_published":"2011-04-20T00:00:00Z","doi":"10.1523/JNEUROSCI.5938-10.2011","quality_controlled":0,"page":"5893 - 5904","publication":"Journal of Neuroscience","citation":{"short":"E. Szabadits, C. Cserép, A. Szonyi, Y. Fukazawa, R. Shigemoto, M. Watanabe, S. Itohara, T. Freund, G. Nyíri, Journal of Neuroscience 31 (2011) 5893–5904.","mla":"Szabadits, Eszter, et al. “NMDA Receptors in Hippocampal GABAergic Synapses and Their Role in Nitric Oxide Signaling.” Journal of Neuroscience, vol. 31, no. 16, Society for Neuroscience, 2011, pp. 5893–904, doi:10.1523/JNEUROSCI.5938-10.2011.","chicago":"Szabadits, Eszter, Csaba Cserép, András Szonyi, Yugo Fukazawa, Ryuichi Shigemoto, Masahiko Watanabe, Shigeyoshi Itohara, Tamás Freund, and Gábor Nyíri. “NMDA Receptors in Hippocampal GABAergic Synapses and Their Role in Nitric Oxide Signaling.” Journal of Neuroscience. Society for Neuroscience, 2011. https://doi.org/10.1523/JNEUROSCI.5938-10.2011.","ama":"Szabadits E, Cserép C, Szonyi A, et al. NMDA receptors in hippocampal GABAergic synapses and their role in nitric oxide signaling. Journal of Neuroscience. 2011;31(16):5893-5904. doi:10.1523/JNEUROSCI.5938-10.2011","ieee":"E. Szabadits et al., “NMDA receptors in hippocampal GABAergic synapses and their role in nitric oxide signaling,” Journal of Neuroscience, vol. 31, no. 16. Society for Neuroscience, pp. 5893–5904, 2011.","apa":"Szabadits, E., Cserép, C., Szonyi, A., Fukazawa, Y., Shigemoto, R., Watanabe, M., … Nyíri, G. (2011). NMDA receptors in hippocampal GABAergic synapses and their role in nitric oxide signaling. Journal of Neuroscience. Society for Neuroscience. https://doi.org/10.1523/JNEUROSCI.5938-10.2011","ista":"Szabadits E, Cserép C, Szonyi A, Fukazawa Y, Shigemoto R, Watanabe M, Itohara S, Freund T, Nyíri G. 2011. NMDA receptors in hippocampal GABAergic synapses and their role in nitric oxide signaling. Journal of Neuroscience. 31(16), 5893–5904."},"extern":1,"abstract":[{"lang":"eng","text":"GABAergic inhibition plays a central role in the control of pyramidal cell ensemble activities; thus, any signaling mechanism that regulates inhibition is able to fine-tune network patterns. Here, we provide evidence that the retrograde nitric oxide (NO)- cGMP cascade triggered by NMDA receptor (NMDAR) activation plays a role in the control of hippocampal GABAergic transmission in mice. GABAergic synapses express neuronal nitric oxide synthase (nNOS) postsynaptically and NO receptors (NO-sensitive guanylyl cyclase) in the presynaptic terminals. We hypothesized that-similar to glutamatergic synapses-the Ca 2+ transients required to activate nNOS were provided by NMDA receptor activation. Indeed, administration of 5 μm NMDA induced a robust nNOS-dependent cGMP production in GABAergic terminals, selectively in the CA1 and CA3c areas. Furthermore, using preembedding, postembedding, and SDS-digested freeze-fracture replica immunogold labeling, we provided quantitative immunocytochemical evidence that NMDAR subunits GluN1, GluN2A, and GluN2B were present in most somatic GABAergic synapses postsynaptically. These data indicate that NMDARs can modulate hippocampal GABAergic inhibition via NO- cGMP signaling in an activity-dependent manner and that this effect is subregion specific in the mouse hippocampus."}],"publist_id":"4389","issue":"16","type":"journal_article","date_created":"2018-12-11T11:58:06Z","date_updated":"2021-01-12T06:57:56Z","volume":31,"author":[{"last_name":"Szabadits","first_name":"Eszter","full_name":"Szabadits, Eszter"},{"first_name":"Csaba","last_name":"Cserép","full_name":"Cserép, Csaba"},{"first_name":"András","last_name":"Szonyi","full_name":"Szonyi, András"},{"first_name":"Yugo","last_name":"Fukazawa","full_name":"Fukazawa, Yugo"},{"orcid":"0000-0001-8761-9444","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","last_name":"Shigemoto","first_name":"Ryuichi","full_name":"Ryuichi Shigemoto"},{"full_name":"Watanabe, Masahiko","last_name":"Watanabe","first_name":"Masahiko"},{"first_name":"Shigeyoshi","last_name":"Itohara","full_name":"Itohara, Shigeyoshi"},{"first_name":"Tamás","last_name":"Freund","full_name":"Freund, Tamás F"},{"first_name":"Gábor","last_name":"Nyíri","full_name":"Nyíri, Gábor"}],"publication_status":"published","title":"NMDA receptors in hippocampal GABAergic synapses and their role in nitric oxide signaling","status":"public","publisher":"Society for Neuroscience","intvolume":" 31","_id":"2512","year":"2011"},{"date_updated":"2021-01-12T06:57:56Z","date_created":"2018-12-11T11:58:07Z","volume":14,"author":[{"first_name":"Duane","last_name":"Allen","full_name":"Allen, Duane H"},{"full_name":"Bond, Chris T","first_name":"Chris","last_name":"Bond"},{"full_name":"Luján, Rafael","last_name":"Luján","first_name":"Rafael"},{"full_name":"Ballesteros-Merino, Carmen","last_name":"Ballesteros Merino","first_name":"Carmen"},{"last_name":"Lin","first_name":"Michael","full_name":"Lin, Michael T"},{"full_name":"Wang, Kang","first_name":"Kang","last_name":"Wang"},{"first_name":"Nathan","last_name":"Klett","full_name":"Klett, Nathan"},{"full_name":"Watanabe, Masahiko","last_name":"Watanabe","first_name":"Masahiko"},{"id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8761-9444","first_name":"Ryuichi","last_name":"Shigemoto","full_name":"Ryuichi Shigemoto"},{"first_name":"Robert","last_name":"Stackman","full_name":"Stackman, Robert W"},{"last_name":"Maylie","first_name":"James","full_name":"Maylie, James G"},{"last_name":"Adelman","first_name":"John","full_name":"Adelman, John P"}],"status":"public","publication_status":"published","title":"The SK2-long isoform directs synaptic localization and function of SK2-containing channels","publisher":"Nature Publishing Group","intvolume":" 14","_id":"2513","year":"2011","extern":1,"abstract":[{"text":"SK2-containing channels are expressed in the postsynaptic density (PSD) of dendritic spines on mouse hippocampal area CA1 pyramidal neurons and influence synaptic responses, plasticity and learning. The Sk2 gene (also known as Kcnn2) encodes two isoforms that differ only in the length of their N-terminal domains. SK2-long (SK2-L) and SK2-short (SK2-S) are coexpressed in CA1 pyramidal neurons and likely form heteromeric channels. In mice lacking SK2-L (SK2-S only mice), SK2-S-containing channels were expressed in the extrasynaptic membrane, but were excluded from the PSD. The SK channel contribution to excitatory postsynaptic potentials was absent in SK2-S only mice and was restored by SK2-L re-expression. Blocking SK channels increased the amount of long-term potentiation induced in area CA1 in slices from wild-type mice but had no effect in slices from SK2-S only mice. Furthermore, SK2-S only mice outperformed wild-type mice in the novel object recognition task. These results indicate that SK2-L directs synaptic SK2-containing channel expression and is important for normal synaptic signaling, plasticity and learning. ","lang":"eng"}],"issue":"6","publist_id":"4388","type":"journal_article","doi":"10.1038/nn.2832","date_published":"2011-06-01T00:00:00Z","quality_controlled":0,"page":"744 - 749","publication":"Nature Neuroscience","citation":{"chicago":"Allen, Duane, Chris Bond, Rafael Luján, Carmen Ballesteros Merino, Michael Lin, Kang Wang, Nathan Klett, et al. “The SK2-Long Isoform Directs Synaptic Localization and Function of SK2-Containing Channels.” Nature Neuroscience. Nature Publishing Group, 2011. https://doi.org/10.1038/nn.2832.","short":"D. Allen, C. Bond, R. Luján, C. Ballesteros Merino, M. Lin, K. Wang, N. Klett, M. Watanabe, R. Shigemoto, R. Stackman, J. Maylie, J. Adelman, Nature Neuroscience 14 (2011) 744–749.","mla":"Allen, Duane, et al. “The SK2-Long Isoform Directs Synaptic Localization and Function of SK2-Containing Channels.” Nature Neuroscience, vol. 14, no. 6, Nature Publishing Group, 2011, pp. 744–49, doi:10.1038/nn.2832.","ieee":"D. Allen et al., “The SK2-long isoform directs synaptic localization and function of SK2-containing channels,” Nature Neuroscience, vol. 14, no. 6. Nature Publishing Group, pp. 744–749, 2011.","apa":"Allen, D., Bond, C., Luján, R., Ballesteros Merino, C., Lin, M., Wang, K., … Adelman, J. (2011). The SK2-long isoform directs synaptic localization and function of SK2-containing channels. Nature Neuroscience. Nature Publishing Group. https://doi.org/10.1038/nn.2832","ista":"Allen D, Bond C, Luján R, Ballesteros Merino C, Lin M, Wang K, Klett N, Watanabe M, Shigemoto R, Stackman R, Maylie J, Adelman J. 2011. The SK2-long isoform directs synaptic localization and function of SK2-containing channels. Nature Neuroscience. 14(6), 744–749.","ama":"Allen D, Bond C, Luján R, et al. The SK2-long isoform directs synaptic localization and function of SK2-containing channels. Nature Neuroscience. 2011;14(6):744-749. doi:10.1038/nn.2832"},"month":"06","day":"01"},{"status":"public","title":"Quantum diffusion and eigenfunction delocalization in a random band matrix model","publication_status":"published","intvolume":" 303","publisher":"Springer","_id":"2717","year":"2011","date_updated":"2021-01-12T06:59:15Z","date_created":"2018-12-11T11:59:14Z","volume":303,"author":[{"full_name":"László Erdös","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5366-9603","first_name":"László","last_name":"Erdös"},{"full_name":"Knowles, Antti","first_name":"Antti","last_name":"Knowles"}],"type":"journal_article","extern":1,"abstract":[{"text":"We consider Hermitian and symmetric random band matrices H in d ≥ 1 dimensions. The matrix elements H xy, indexed by, are independent, uniformly distributed random variables if {pipe}x-y{pipe} is less than the band width W, and zero otherwise. We prove that the time evolution of a quantum particle subject to the Hamiltonian H is diffusive on time scales. We also show that the localization length of the eigenvectors of H is larger than a factor W d/6 times the band width. All results are uniform in the size of the matrix. ","lang":"eng"}],"issue":"2","publist_id":"4175","quality_controlled":0,"page":"509 - 554","publication":"Communications in Mathematical Physics","citation":{"mla":"Erdös, László, and Antti Knowles. “Quantum Diffusion and Eigenfunction Delocalization in a Random Band Matrix Model.” Communications in Mathematical Physics, vol. 303, no. 2, Springer, 2011, pp. 509–54, doi:10.1007/s00220-011-1204-2.","short":"L. Erdös, A. Knowles, Communications in Mathematical Physics 303 (2011) 509–554.","chicago":"Erdös, László, and Antti Knowles. “Quantum Diffusion and Eigenfunction Delocalization in a Random Band Matrix Model.” Communications in Mathematical Physics. Springer, 2011. https://doi.org/10.1007/s00220-011-1204-2.","ama":"Erdös L, Knowles A. Quantum diffusion and eigenfunction delocalization in a random band matrix model. Communications in Mathematical Physics. 2011;303(2):509-554. doi:10.1007/s00220-011-1204-2","ista":"Erdös L, Knowles A. 2011. Quantum diffusion and eigenfunction delocalization in a random band matrix model. Communications in Mathematical Physics. 303(2), 509–554.","apa":"Erdös, L., & Knowles, A. (2011). Quantum diffusion and eigenfunction delocalization in a random band matrix model. Communications in Mathematical Physics. Springer. https://doi.org/10.1007/s00220-011-1204-2","ieee":"L. Erdös and A. Knowles, “Quantum diffusion and eigenfunction delocalization in a random band matrix model,” Communications in Mathematical Physics, vol. 303, no. 2. Springer, pp. 509–554, 2011."},"date_published":"2011-04-01T00:00:00Z","doi":"10.1007/s00220-011-1204-2","day":"01","month":"04"}]