[{"scopus_import":"1","day":"01","article_processing_charge":"No","publication":"Science China Mathematics","citation":{"mla":"De La Bretèche, Régis, et al. “On a Certain Non-Split Cubic Surface.” Science China Mathematics, vol. 62, no. 12, Springer, 2019, pp. 2435–2446, doi:10.1007/s11425-018-9543-8.","short":"R. De La Bretèche, K.N. Destagnol, J. Liu, J. Wu, Y. Zhao, Science China Mathematics 62 (2019) 2435–2446.","chicago":"De La Bretèche, Régis, Kevin N Destagnol, Jianya Liu, Jie Wu, and Yongqiang Zhao. “On a Certain Non-Split Cubic Surface.” Science China Mathematics. Springer, 2019. https://doi.org/10.1007/s11425-018-9543-8.","ama":"De La Bretèche R, Destagnol KN, Liu J, Wu J, Zhao Y. On a certain non-split cubic surface. Science China Mathematics. 2019;62(12):2435–2446. doi:10.1007/s11425-018-9543-8","ista":"De La Bretèche R, Destagnol KN, Liu J, Wu J, Zhao Y. 2019. On a certain non-split cubic surface. Science China Mathematics. 62(12), 2435–2446.","apa":"De La Bretèche, R., Destagnol, K. N., Liu, J., Wu, J., & Zhao, Y. (2019). On a certain non-split cubic surface. Science China Mathematics. Springer. https://doi.org/10.1007/s11425-018-9543-8","ieee":"R. De La Bretèche, K. N. Destagnol, J. Liu, J. Wu, and Y. Zhao, “On a certain non-split cubic surface,” Science China Mathematics, vol. 62, no. 12. Springer, pp. 2435–2446, 2019."},"article_type":"original","page":"2435–2446","date_published":"2019-12-01T00:00:00Z","type":"journal_article","abstract":[{"lang":"eng","text":"This paper establishes an asymptotic formula with a power-saving error term for the number of rational points of bounded height on the singular cubic surface of ℙ3ℚ given by the following equation 𝑥0(𝑥21+𝑥22)−𝑥33=0 in agreement with the Manin-Peyre conjectures.\r\n"}],"issue":"12","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"6620","status":"public","title":"On a certain non-split cubic surface","intvolume":" 62","oa_version":"Preprint","month":"12","publication_identifier":{"issn":["16747283"]},"oa":1,"external_id":{"arxiv":["1709.09476"],"isi":["000509102200001"]},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1709.09476"}],"quality_controlled":"1","isi":1,"doi":"10.1007/s11425-018-9543-8","language":[{"iso":"eng"}],"year":"2019","publication_status":"published","publisher":"Springer","department":[{"_id":"TiBr"}],"author":[{"full_name":"De La Bretèche, Régis","last_name":"De La Bretèche","first_name":"Régis"},{"full_name":"Destagnol, Kevin N","id":"44DDECBC-F248-11E8-B48F-1D18A9856A87","first_name":"Kevin N","last_name":"Destagnol"},{"first_name":"Jianya","last_name":"Liu","full_name":"Liu, Jianya"},{"last_name":"Wu","first_name":"Jie","full_name":"Wu, Jie"},{"last_name":"Zhao","first_name":"Yongqiang","full_name":"Zhao, Yongqiang"}],"date_updated":"2023-08-28T12:32:20Z","date_created":"2019-07-07T21:59:25Z","volume":62},{"language":[{"iso":"eng"}],"doi":"10.1111/evo.13784","project":[{"_id":"25AEDD42-B435-11E9-9278-68D0E5697425","grant_number":"704172","name":"Rate of Adaptation in Changing Environment","call_identifier":"H2020"},{"call_identifier":"FP7","name":"Speed of Adaptation in Population Genetics and Evolutionary Computation","_id":"25B1EC9E-B435-11E9-9278-68D0E5697425","grant_number":"618091"}],"quality_controlled":"1","isi":1,"tmp":{"name":"Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode","short":"CC BY-NC-ND (4.0)","image":"/images/cc_by_nc_nd.png"},"oa":1,"external_id":{"isi":["000474031600001"]},"month":"07","volume":73,"date_created":"2019-07-14T21:59:20Z","date_updated":"2023-08-29T06:31:14Z","author":[{"full_name":"Trubenova, Barbora","id":"42302D54-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6873-2967","first_name":"Barbora","last_name":"Trubenova"},{"last_name":"Krejca","first_name":"Martin ","full_name":"Krejca, Martin "},{"first_name":"Per Kristian","last_name":"Lehre","full_name":"Lehre, Per Kristian"},{"full_name":"Kötzing, Timo","last_name":"Kötzing","first_name":"Timo"}],"publisher":"Wiley","department":[{"_id":"NiBa"}],"publication_status":"published","year":"2019","acknowledgement":"The authors would like to thank to Tiago Paixao and Nick Barton for useful comments and advice.","license":"https://creativecommons.org/licenses/by-nc-nd/4.0/","ec_funded":1,"file_date_updated":"2020-07-14T12:47:34Z","date_published":"2019-07-01T00:00:00Z","page":"1356-1374","article_type":"original","citation":{"ama":"Trubenova B, Krejca M, Lehre PK, Kötzing T. Surfing on the seascape: Adaptation in a changing environment. Evolution. 2019;73(7):1356-1374. doi:10.1111/evo.13784","ista":"Trubenova B, Krejca M, Lehre PK, Kötzing T. 2019. Surfing on the seascape: Adaptation in a changing environment. Evolution. 73(7), 1356–1374.","ieee":"B. Trubenova, M. Krejca, P. K. Lehre, and T. Kötzing, “Surfing on the seascape: Adaptation in a changing environment,” Evolution, vol. 73, no. 7. Wiley, pp. 1356–1374, 2019.","apa":"Trubenova, B., Krejca, M., Lehre, P. K., & Kötzing, T. (2019). Surfing on the seascape: Adaptation in a changing environment. Evolution. Wiley. https://doi.org/10.1111/evo.13784","mla":"Trubenova, Barbora, et al. “Surfing on the Seascape: Adaptation in a Changing Environment.” Evolution, vol. 73, no. 7, Wiley, 2019, pp. 1356–74, doi:10.1111/evo.13784.","short":"B. Trubenova, M. Krejca, P.K. Lehre, T. Kötzing, Evolution 73 (2019) 1356–1374.","chicago":"Trubenova, Barbora, Martin Krejca, Per Kristian Lehre, and Timo Kötzing. “Surfing on the Seascape: Adaptation in a Changing Environment.” Evolution. Wiley, 2019. https://doi.org/10.1111/evo.13784."},"publication":"Evolution","has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","day":"01","scopus_import":"1","file":[{"date_created":"2019-07-16T06:08:31Z","date_updated":"2020-07-14T12:47:34Z","checksum":"9831ca65def2d62498c7b08338b6d237","file_id":"6643","relation":"main_file","creator":"apreinsp","content_type":"application/pdf","file_size":815416,"file_name":"2019_Evolution_TrubenovaBarbora.pdf","access_level":"open_access"}],"oa_version":"Published Version","intvolume":" 73","title":"Surfing on the seascape: Adaptation in a changing environment","ddc":["576"],"status":"public","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"6637","issue":"7","abstract":[{"text":"The environment changes constantly at various time scales and, in order to survive, species need to keep adapting. Whether these species succeed in avoiding extinction is a major evolutionary question. Using a multilocus evolutionary model of a mutation‐limited population adapting under strong selection, we investigate the effects of the frequency of environmental fluctuations on adaptation. Our results rely on an “adaptive‐walk” approximation and use mathematical methods from evolutionary computation theory to investigate the interplay between fluctuation frequency, the similarity of environments, and the number of loci contributing to adaptation. First, we assume a linear additive fitness function, but later generalize our results to include several types of epistasis. We show that frequent environmental changes prevent populations from reaching a fitness peak, but they may also prevent the large fitness loss that occurs after a single environmental change. Thus, the population can survive, although not thrive, in a wide range of conditions. Furthermore, we show that in a frequently changing environment, the similarity of threats that a population faces affects the level of adaptation that it is able to achieve. We check and supplement our analytical results with simulations.","lang":"eng"}],"type":"journal_article"},{"date_published":"2019-06-01T00:00:00Z","page":"457-490","citation":{"ieee":"A. Akopyan, A. Hubard, and R. Karasev, “Lower and upper bounds for the waists of different spaces,” Topological Methods in Nonlinear Analysis, vol. 53, no. 2. Akademicka Platforma Czasopism, pp. 457–490, 2019.","apa":"Akopyan, A., Hubard, A., & Karasev, R. (2019). Lower and upper bounds for the waists of different spaces. Topological Methods in Nonlinear Analysis. Akademicka Platforma Czasopism. https://doi.org/10.12775/TMNA.2019.008","ista":"Akopyan A, Hubard A, Karasev R. 2019. Lower and upper bounds for the waists of different spaces. Topological Methods in Nonlinear Analysis. 53(2), 457–490.","ama":"Akopyan A, Hubard A, Karasev R. Lower and upper bounds for the waists of different spaces. Topological Methods in Nonlinear Analysis. 2019;53(2):457-490. doi:10.12775/TMNA.2019.008","chicago":"Akopyan, Arseniy, Alfredo Hubard, and Roman Karasev. “Lower and Upper Bounds for the Waists of Different Spaces.” Topological Methods in Nonlinear Analysis. Akademicka Platforma Czasopism, 2019. https://doi.org/10.12775/TMNA.2019.008.","short":"A. Akopyan, A. Hubard, R. Karasev, Topological Methods in Nonlinear Analysis 53 (2019) 457–490.","mla":"Akopyan, Arseniy, et al. “Lower and Upper Bounds for the Waists of Different Spaces.” Topological Methods in Nonlinear Analysis, vol. 53, no. 2, Akademicka Platforma Czasopism, 2019, pp. 457–90, doi:10.12775/TMNA.2019.008."},"publication":"Topological Methods in Nonlinear Analysis","article_processing_charge":"No","day":"01","scopus_import":"1","oa_version":"Preprint","intvolume":" 53","status":"public","title":"Lower and upper bounds for the waists of different spaces","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"6634","issue":"2","abstract":[{"lang":"eng","text":"In this paper we prove several new results around Gromov's waist theorem. We give a simple proof of Vaaler's theorem on sections of the unit cube using the Borsuk-Ulam-Crofton technique, consider waists of real and complex projective spaces, flat tori, convex bodies in Euclidean space; and establish waist-type results in terms of the Hausdorff measure."}],"type":"journal_article","language":[{"iso":"eng"}],"doi":"10.12775/TMNA.2019.008","project":[{"name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7","_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734"}],"isi":1,"quality_controlled":"1","oa":1,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1612.06926"}],"external_id":{"isi":["000472541600004"],"arxiv":["1612.06926"]},"month":"06","volume":53,"date_created":"2019-07-14T21:59:19Z","date_updated":"2023-08-29T06:32:48Z","author":[{"full_name":"Akopyan, Arseniy","id":"430D2C90-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2548-617X","first_name":"Arseniy","last_name":"Akopyan"},{"full_name":"Hubard, Alfredo","first_name":"Alfredo","last_name":"Hubard"},{"first_name":"Roman","last_name":"Karasev","full_name":"Karasev, Roman"}],"publisher":"Akademicka Platforma Czasopism","department":[{"_id":"HeEd"}],"publication_status":"published","year":"2019","ec_funded":1},{"scopus_import":"1","day":"01","article_processing_charge":"No","page":"3201-3207","publication":"Discrete Mathematics","citation":{"mla":"Silva, André, et al. “Graphs with at Most One Crossing.” Discrete Mathematics, vol. 342, no. 11, Elsevier, 2019, pp. 3201–07, doi:10.1016/j.disc.2019.06.031.","short":"A. Silva, A.M. Arroyo Guevara, B. Richter, O. Lee, Discrete Mathematics 342 (2019) 3201–3207.","chicago":"Silva, André , Alan M Arroyo Guevara, Bruce Richter, and Orlando Lee. “Graphs with at Most One Crossing.” Discrete Mathematics. Elsevier, 2019. https://doi.org/10.1016/j.disc.2019.06.031.","ama":"Silva A, Arroyo Guevara AM, Richter B, Lee O. Graphs with at most one crossing. Discrete Mathematics. 2019;342(11):3201-3207. doi:10.1016/j.disc.2019.06.031","ista":"Silva A, Arroyo Guevara AM, Richter B, Lee O. 2019. Graphs with at most one crossing. Discrete Mathematics. 342(11), 3201–3207.","ieee":"A. Silva, A. M. Arroyo Guevara, B. Richter, and O. Lee, “Graphs with at most one crossing,” Discrete Mathematics, vol. 342, no. 11. Elsevier, pp. 3201–3207, 2019.","apa":"Silva, A., Arroyo Guevara, A. M., Richter, B., & Lee, O. (2019). Graphs with at most one crossing. Discrete Mathematics. Elsevier. https://doi.org/10.1016/j.disc.2019.06.031"},"date_published":"2019-11-01T00:00:00Z","type":"journal_article","abstract":[{"text":"The crossing number of a graph G is the least number of crossings over all possible drawings of G. We present a structural characterization of graphs with crossing number one.","lang":"eng"}],"issue":"11","title":"Graphs with at most one crossing","status":"public","intvolume":" 342","_id":"6638","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","oa_version":"Preprint","month":"11","publication_identifier":{"issn":["0012-365X"]},"isi":1,"quality_controlled":"1","project":[{"name":"Reglas de Conectividad funcional en el hipocampo","_id":"26366136-B435-11E9-9278-68D0E5697425"},{"grant_number":"754411","_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships"}],"oa":1,"external_id":{"arxiv":["1901.09955"],"isi":["000486358100025"]},"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1901.09955"}],"language":[{"iso":"eng"}],"doi":"10.1016/j.disc.2019.06.031","ec_funded":1,"publication_status":"published","department":[{"_id":"UlWa"}],"publisher":"Elsevier","year":"2019","date_created":"2019-07-14T21:59:20Z","date_updated":"2023-08-29T06:31:41Z","volume":342,"author":[{"full_name":"Silva, André ","first_name":"André ","last_name":"Silva"},{"orcid":"0000-0003-2401-8670","id":"3207FDC6-F248-11E8-B48F-1D18A9856A87","last_name":"Arroyo Guevara","first_name":"Alan M","full_name":"Arroyo Guevara, Alan M"},{"last_name":"Richter","first_name":"Bruce","full_name":"Richter, Bruce"},{"full_name":"Lee, Orlando","last_name":"Lee","first_name":"Orlando"}]},{"abstract":[{"lang":"eng","text":"The spatiotemporal organization of cell divisions constitutes an integral part in the development of multicellular organisms, and mis-regulation of cell divisions can lead to severe developmental defects. Cell divisions have an important morphogenetic function in development by regulating growth and shape acquisition of developing tissues, and, conversely, tissue morphogenesis is known to affect both the rate and orientation of cell divisions. Moreover, cell divisions are associated with an extensive reorganization of the cytoskeleton and adhesion apparatus in the dividing cells that in turn can affect large-scale tissue rheological properties. Thus, the interplay between cell divisions and tissue morphogenesis plays a key role in embryo and tissue morphogenesis."}],"type":"journal_article","author":[{"full_name":"Godard, Benoit G","id":"33280250-F248-11E8-B48F-1D18A9856A87","first_name":"Benoit G","last_name":"Godard"},{"last_name":"Heisenberg","first_name":"Carl-Philipp J","orcid":"0000-0002-0912-4566","id":"39427864-F248-11E8-B48F-1D18A9856A87","full_name":"Heisenberg, Carl-Philipp J"}],"volume":60,"oa_version":"None","date_created":"2019-07-14T21:59:17Z","date_updated":"2023-08-29T06:33:14Z","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"6631","year":"2019","intvolume":" 60","publisher":"Elsevier","department":[{"_id":"CaHe"}],"publication_status":"published","title":"Cell division and tissue mechanics","status":"public","article_processing_charge":"No","publication_identifier":{"issn":["0955-0674"]},"day":"01","month":"10","scopus_import":"1","date_published":"2019-10-01T00:00:00Z","doi":"10.1016/j.ceb.2019.05.007","language":[{"iso":"eng"}],"external_id":{"isi":["000486545800016"]},"citation":{"ama":"Godard BG, Heisenberg C-PJ. Cell division and tissue mechanics. Current Opinion in Cell Biology. 2019;60:114-120. doi:10.1016/j.ceb.2019.05.007","apa":"Godard, B. G., & Heisenberg, C.-P. J. (2019). Cell division and tissue mechanics. Current Opinion in Cell Biology. Elsevier. https://doi.org/10.1016/j.ceb.2019.05.007","ieee":"B. G. Godard and C.-P. J. Heisenberg, “Cell division and tissue mechanics,” Current Opinion in Cell Biology, vol. 60. Elsevier, pp. 114–120, 2019.","ista":"Godard BG, Heisenberg C-PJ. 2019. Cell division and tissue mechanics. Current Opinion in Cell Biology. 60, 114–120.","short":"B.G. Godard, C.-P.J. Heisenberg, Current Opinion in Cell Biology 60 (2019) 114–120.","mla":"Godard, Benoit G., and Carl-Philipp J. Heisenberg. “Cell Division and Tissue Mechanics.” Current Opinion in Cell Biology, vol. 60, Elsevier, 2019, pp. 114–20, doi:10.1016/j.ceb.2019.05.007.","chicago":"Godard, Benoit G, and Carl-Philipp J Heisenberg. “Cell Division and Tissue Mechanics.” Current Opinion in Cell Biology. Elsevier, 2019. https://doi.org/10.1016/j.ceb.2019.05.007."},"publication":"Current Opinion in Cell Biology","page":"114-120","isi":1,"quality_controlled":"1"},{"oa_version":"Submitted Version","file":[{"relation":"main_file","file_id":"6669","date_created":"2019-07-24T07:36:08Z","date_updated":"2020-07-14T12:47:36Z","checksum":"43c2019d6b48ed9c56e31686c4c2d1f5","file_name":"2019_ACM_Sumin_AuthorVersion.pdf","access_level":"open_access","file_size":10109800,"content_type":"application/pdf","creator":"dernst"},{"relation":"supplementary_material","file_id":"6938","date_updated":"2020-07-14T12:47:36Z","date_created":"2019-10-11T06:51:07Z","checksum":"f80f365a04e35855fa467ea7ab26b16c","file_name":"sumin19geometry-aware-suppl.zip","access_level":"open_access","content_type":"application/zip","file_size":11051245,"creator":"dernst"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"6660","ddc":["000"],"status":"public","title":"Geometry-aware scattering compensation for 3D printing","intvolume":" 38","abstract":[{"text":"Commercially available full-color 3D printing allows for detailed control of material deposition in a volume, but an exact reproduction of a target surface appearance is hampered by the strong subsurface scattering that causes nontrivial volumetric cross-talk at the print surface. Previous work showed how an iterative optimization scheme based on accumulating absorptive materials at the surface can be used to find a volumetric distribution of print materials that closely approximates a given target appearance.\r\n\r\nIn this work, we first revisit the assumption that pushing the absorptive materials to the surface results in minimal volumetric cross-talk. We design a full-fledged optimization on a small domain for this task and confirm this previously reported heuristic. Then, we extend the above approach that is critically limited to color reproduction on planar surfaces, to arbitrary 3D shapes. Our method enables high-fidelity color texture reproduction on 3D prints by effectively compensating for internal light scattering within arbitrarily shaped objects. In addition, we propose a content-aware gamut mapping that significantly improves color reproduction for the pathological case of thin geometric features. Using a wide range of sample objects with complex textures and geometries, we demonstrate color reproduction whose fidelity is superior to state-of-the-art drivers for color 3D printers.","lang":"eng"}],"issue":"4","type":"journal_article","date_published":"2019-07-04T00:00:00Z","publication":"ACM Transactions on Graphics","citation":{"short":"D. Sumin, T. Weyrich, T. Rittig, V. Babaei, T. Nindel, A. Wilkie, P. Didyk, B. Bickel, J. Křivánek, K. Myszkowski, ACM Transactions on Graphics 38 (2019).","mla":"Sumin, Denis, et al. “Geometry-Aware Scattering Compensation for 3D Printing.” ACM Transactions on Graphics, vol. 38, no. 4, 111, ACM, 2019, doi:10.1145/3306346.3322992.","chicago":"Sumin, Denis, Tim Weyrich, Tobias Rittig, Vahid Babaei, Thomas Nindel, Alexander Wilkie, Piotr Didyk, Bernd Bickel, Jaroslav Křivánek, and Karol Myszkowski. “Geometry-Aware Scattering Compensation for 3D Printing.” ACM Transactions on Graphics. ACM, 2019. https://doi.org/10.1145/3306346.3322992.","ama":"Sumin D, Weyrich T, Rittig T, et al. Geometry-aware scattering compensation for 3D printing. ACM Transactions on Graphics. 2019;38(4). doi:10.1145/3306346.3322992","ieee":"D. Sumin et al., “Geometry-aware scattering compensation for 3D printing,” ACM Transactions on Graphics, vol. 38, no. 4. ACM, 2019.","apa":"Sumin, D., Weyrich, T., Rittig, T., Babaei, V., Nindel, T., Wilkie, A., … Myszkowski, K. (2019). Geometry-aware scattering compensation for 3D printing. ACM Transactions on Graphics. ACM. https://doi.org/10.1145/3306346.3322992","ista":"Sumin D, Weyrich T, Rittig T, Babaei V, Nindel T, Wilkie A, Didyk P, Bickel B, Křivánek J, Myszkowski K. 2019. Geometry-aware scattering compensation for 3D printing. ACM Transactions on Graphics. 38(4), 111."},"day":"04","article_processing_charge":"No","has_accepted_license":"1","scopus_import":"1","author":[{"full_name":"Sumin, Denis","last_name":"Sumin","first_name":"Denis"},{"first_name":"Tim","last_name":"Weyrich","full_name":"Weyrich, Tim"},{"first_name":"Tobias","last_name":"Rittig","full_name":"Rittig, Tobias"},{"full_name":"Babaei, Vahid","last_name":"Babaei","first_name":"Vahid"},{"last_name":"Nindel","first_name":"Thomas","full_name":"Nindel, Thomas"},{"full_name":"Wilkie, Alexander","last_name":"Wilkie","first_name":"Alexander"},{"full_name":"Didyk, Piotr","last_name":"Didyk","first_name":"Piotr"},{"id":"49876194-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6511-9385","first_name":"Bernd","last_name":"Bickel","full_name":"Bickel, Bernd"},{"full_name":"Křivánek, Jaroslav","last_name":"Křivánek","first_name":"Jaroslav"},{"full_name":"Myszkowski, Karol","last_name":"Myszkowski","first_name":"Karol"}],"date_created":"2019-07-22T07:22:28Z","date_updated":"2023-08-29T06:40:49Z","volume":38,"year":"2019","publication_status":"published","department":[{"_id":"BeBi"}],"publisher":"ACM","file_date_updated":"2020-07-14T12:47:36Z","ec_funded":1,"article_number":"111","doi":"10.1145/3306346.3322992","language":[{"iso":"eng"}],"oa":1,"external_id":{"isi":["000475740600085"]},"isi":1,"quality_controlled":"1","project":[{"name":"Distributed 3D Object Design","call_identifier":"H2020","_id":"2508E324-B435-11E9-9278-68D0E5697425","grant_number":"642841"},{"grant_number":"715767","_id":"24F9549A-B435-11E9-9278-68D0E5697425","name":"MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and Modeling","call_identifier":"H2020"}],"month":"07","publication_identifier":{"issn":["0730-0301"]}},{"month":"07","tmp":{"name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png","short":"CC BY-NC (4.0)"},"oa":1,"external_id":{"isi":["000473730600007"]},"isi":1,"quality_controlled":"1","doi":"10.1101/gr.238824.118","language":[{"iso":"eng"}],"file_date_updated":"2020-07-14T12:47:35Z","license":"https://creativecommons.org/licenses/by-nc/4.0/","year":"2019","publisher":"CSH Press","department":[{"_id":"BeVi"}],"publication_status":"published","author":[{"full_name":"Raices, Julia","id":"3EE67F22-F248-11E8-B48F-1D18A9856A87","first_name":"Julia","last_name":"Raices"},{"first_name":"Paulo","last_name":"Otto","full_name":"Otto, Paulo"},{"full_name":"Vibranovski, Maria","first_name":"Maria","last_name":"Vibranovski"}],"volume":29,"date_updated":"2023-08-29T06:35:05Z","date_created":"2019-07-21T21:59:15Z","scopus_import":"1","has_accepted_license":"1","article_processing_charge":"No","day":"01","citation":{"ama":"Raices J, Otto P, Vibranovski M. Haploid selection drives new gene male germline expression. Genome Research. 2019;29(7):1115-1122. doi:10.1101/gr.238824.118","apa":"Raices, J., Otto, P., & Vibranovski, M. (2019). Haploid selection drives new gene male germline expression. Genome Research. CSH Press. https://doi.org/10.1101/gr.238824.118","ieee":"J. Raices, P. Otto, and M. Vibranovski, “Haploid selection drives new gene male germline expression,” Genome Research, vol. 29, no. 7. CSH Press, pp. 1115–1122, 2019.","ista":"Raices J, Otto P, Vibranovski M. 2019. Haploid selection drives new gene male germline expression. Genome Research. 29(7), 1115–1122.","short":"J. Raices, P. Otto, M. Vibranovski, Genome Research 29 (2019) 1115–1122.","mla":"Raices, Julia, et al. “Haploid Selection Drives New Gene Male Germline Expression.” Genome Research, vol. 29, no. 7, CSH Press, 2019, pp. 1115–22, doi:10.1101/gr.238824.118.","chicago":"Raices, Julia, Paulo Otto, and Maria Vibranovski. “Haploid Selection Drives New Gene Male Germline Expression.” Genome Research. CSH Press, 2019. https://doi.org/10.1101/gr.238824.118."},"publication":"Genome Research","page":"1115-1122","date_published":"2019-07-01T00:00:00Z","type":"journal_article","issue":"7","abstract":[{"text":"New genes are a major source of novelties, and a disproportionate amount of them are known to show testis expression in later phases of male gametogenesis in different groups such as mammals and plants. Here, we propose that this enhanced expression is a consequence of haploid selection during the latter stages of male gametogenesis. Because emerging adaptive mutations will be fixed faster if their phenotypes are expressed by haploid rather than diploid genotypes, new genes with advantageous functions arising during this unique stage of development have a better chance to become fixed. To test this hypothesis, expression levels of genes of differing evolutionary age were examined at various stages of Drosophila spermatogenesis. We found, consistent with a model based on haploid selection, that new Drosophila genes are both expressed in later haploid phases of spermatogenesis and harbor a significant enrichment of adaptive mutations. Additionally, the observed overexpression of new genes in the latter phases of spermatogenesis was limited to the autosomes. Because all male cells exhibit hemizygous expression for X-linked genes (and therefore effectively haploid), there is no expectation that selection acting on late spermatogenesis will have a different effect on X-linked genes in comparison to initial diploid phases. Together, our proposed hypothesis and the analyzed data suggest that natural selection in haploid cells elucidates several aspects of the origin of new genes by explaining the general prevalence of their testis expression, and a parsimonious solution for new alleles to avoid being lost by genetic drift or pseudogenization. ","lang":"eng"}],"_id":"6658","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","intvolume":" 29","title":"Haploid selection drives new gene male germline expression","ddc":["576"],"status":"public","file":[{"access_level":"open_access","file_name":"2019_GenomeResearch_Raices.pdf","file_size":2319022,"content_type":"application/pdf","creator":"apreinsp","relation":"main_file","file_id":"6670","checksum":"4636f03a6750f90b88bf2bc3eb9d71ae","date_created":"2019-07-24T08:05:56Z","date_updated":"2020-07-14T12:47:35Z"}],"oa_version":"Published Version"},{"article_number":"110","ec_funded":1,"file_date_updated":"2020-07-14T12:47:35Z","department":[{"_id":"BeBi"}],"publisher":"ACM","publication_status":"published","year":"2019","volume":38,"date_updated":"2023-08-29T06:35:52Z","date_created":"2019-07-19T06:18:15Z","related_material":{"link":[{"url":"https://youtu.be/SO349S8-x_w","description":"YouTube Video","relation":"supplementary_material"}]},"author":[{"first_name":"Thomas","last_name":"Alderighi","full_name":"Alderighi, Thomas"},{"full_name":"Malomo, Luigi","last_name":"Malomo","first_name":"Luigi"},{"last_name":"Giorgi","first_name":"Daniela","full_name":"Giorgi, Daniela"},{"orcid":"0000-0001-6511-9385","id":"49876194-F248-11E8-B48F-1D18A9856A87","last_name":"Bickel","first_name":"Bernd","full_name":"Bickel, Bernd"},{"first_name":"Paolo","last_name":"Cignoni","full_name":"Cignoni, Paolo"},{"last_name":"Pietroni","first_name":"Nico","full_name":"Pietroni, Nico"}],"publication_identifier":{"issn":["0730-0301"]},"month":"07","project":[{"_id":"24F9549A-B435-11E9-9278-68D0E5697425","grant_number":"715767","name":"MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and Modeling","call_identifier":"H2020"}],"quality_controlled":"1","isi":1,"oa":1,"external_id":{"isi":["000475740600084"]},"language":[{"iso":"eng"}],"doi":"10.1145/3306346.3322981","type":"journal_article","issue":"4","abstract":[{"text":"We propose a novel technique for the automatic design of molds to cast highly complex shapes. The technique generates composite, two-piece molds. Each mold piece is made up of a hard plastic shell and a flexible silicone part. Thanks to the thin, soft, and smartly shaped silicone part, which is kept in place by a hard plastic shell, we can cast objects of unprecedented complexity. An innovative algorithm based on a volumetric analysis defines the layout of the internal cuts in the silicone mold part. Our approach can robustly handle thin protruding features and intertwined topologies that have caused previous methods to fail. We compare our results with state of the art techniques, and we demonstrate the casting of shapes with extremely complex geometry.","lang":"eng"}],"intvolume":" 38","status":"public","title":"Volume-aware design of composite molds","ddc":["000"],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"6650","file":[{"checksum":"b4562af94672b44d2a501046427412af","date_updated":"2020-07-14T12:47:35Z","date_created":"2019-07-19T06:18:53Z","relation":"main_file","file_id":"6651","content_type":"application/pdf","file_size":74316182,"creator":"dernst","access_level":"open_access","file_name":"2019_ACM_Alderighi_AuthorVersion.pdf"}],"oa_version":"Submitted Version","scopus_import":"1","article_processing_charge":"No","has_accepted_license":"1","day":"01","citation":{"apa":"Alderighi, T., Malomo, L., Giorgi, D., Bickel, B., Cignoni, P., & Pietroni, N. (2019). Volume-aware design of composite molds. ACM Transactions on Graphics. ACM. https://doi.org/10.1145/3306346.3322981","ieee":"T. Alderighi, L. Malomo, D. Giorgi, B. Bickel, P. Cignoni, and N. Pietroni, “Volume-aware design of composite molds,” ACM Transactions on Graphics, vol. 38, no. 4. ACM, 2019.","ista":"Alderighi T, Malomo L, Giorgi D, Bickel B, Cignoni P, Pietroni N. 2019. Volume-aware design of composite molds. ACM Transactions on Graphics. 38(4), 110.","ama":"Alderighi T, Malomo L, Giorgi D, Bickel B, Cignoni P, Pietroni N. Volume-aware design of composite molds. ACM Transactions on Graphics. 2019;38(4). doi:10.1145/3306346.3322981","chicago":"Alderighi, Thomas, Luigi Malomo, Daniela Giorgi, Bernd Bickel, Paolo Cignoni, and Nico Pietroni. “Volume-Aware Design of Composite Molds.” ACM Transactions on Graphics. ACM, 2019. https://doi.org/10.1145/3306346.3322981.","short":"T. Alderighi, L. Malomo, D. Giorgi, B. Bickel, P. Cignoni, N. Pietroni, ACM Transactions on Graphics 38 (2019).","mla":"Alderighi, Thomas, et al. “Volume-Aware Design of Composite Molds.” ACM Transactions on Graphics, vol. 38, no. 4, 110, ACM, 2019, doi:10.1145/3306346.3322981."},"publication":"ACM Transactions on Graphics","date_published":"2019-07-01T00:00:00Z"},{"abstract":[{"lang":"eng","text":"With the recent publication by Silpe and Bassler (2019), considering phage detection of a bacterial quorum-sensing (QS) autoinducer, we now have as many as five examples of phage-associated intercellular communication (Table 1). Each potentially involves ecological inferences by phages as to concentrations of surrounding phage-infected or uninfected bacteria. While the utility of phage detection of bacterial QS molecules may at first glance appear to be straightforward, we suggest in this commentary that the underlying ecological explanation is unlikely to be simple."}],"type":"journal_article","oa_version":"Published Version","file":[{"access_level":"open_access","file_name":"2019_Frontiers_Igler.pdf","creator":"apreinsp","file_size":246151,"content_type":"application/pdf","file_id":"6722","relation":"main_file","checksum":"317a06067e9a8e717bb55f23e0d77ba7","date_created":"2019-07-29T07:51:54Z","date_updated":"2020-07-14T12:47:38Z"}],"ddc":["570"],"status":"public","title":"Commentary: A host-produced quorum-sensing autoinducer controls a phage lysis-lysogeny decision","intvolume":" 10","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"6717","day":"03","has_accepted_license":"1","article_processing_charge":"Yes (via OA deal)","scopus_import":"1","date_published":"2019-06-03T00:00:00Z","publication":"Frontiers in Microbiology","citation":{"mla":"Igler, Claudia, and Stephen T. Abedon. “Commentary: A Host-Produced Quorum-Sensing Autoinducer Controls a Phage Lysis-Lysogeny Decision.” Frontiers in Microbiology, vol. 10, 1171, Frontiers, 2019, doi:10.3389/fmicb.2019.01171.","short":"C. Igler, S.T. Abedon, Frontiers in Microbiology 10 (2019).","chicago":"Igler, Claudia, and Stephen T. Abedon. “Commentary: A Host-Produced Quorum-Sensing Autoinducer Controls a Phage Lysis-Lysogeny Decision.” Frontiers in Microbiology. Frontiers, 2019. https://doi.org/10.3389/fmicb.2019.01171.","ama":"Igler C, Abedon ST. Commentary: A host-produced quorum-sensing autoinducer controls a phage lysis-lysogeny decision. Frontiers in Microbiology. 2019;10. doi:10.3389/fmicb.2019.01171","ista":"Igler C, Abedon ST. 2019. Commentary: A host-produced quorum-sensing autoinducer controls a phage lysis-lysogeny decision. Frontiers in Microbiology. 10, 1171.","apa":"Igler, C., & Abedon, S. T. (2019). Commentary: A host-produced quorum-sensing autoinducer controls a phage lysis-lysogeny decision. Frontiers in Microbiology. Frontiers. https://doi.org/10.3389/fmicb.2019.01171","ieee":"C. Igler and S. T. Abedon, “Commentary: A host-produced quorum-sensing autoinducer controls a phage lysis-lysogeny decision,” Frontiers in Microbiology, vol. 10. Frontiers, 2019."},"license":"https://creativecommons.org/licenses/by/4.0/","file_date_updated":"2020-07-14T12:47:38Z","article_number":"1171","date_updated":"2023-08-29T06:41:20Z","date_created":"2019-07-28T21:59:18Z","volume":10,"author":[{"full_name":"Igler, Claudia","last_name":"Igler","first_name":"Claudia","id":"46613666-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Abedon","first_name":"Stephen T.","full_name":"Abedon, Stephen T."}],"publication_status":"published","publisher":"Frontiers","department":[{"_id":"CaGu"}],"year":"2019","month":"06","language":[{"iso":"eng"}],"doi":"10.3389/fmicb.2019.01171","quality_controlled":"1","isi":1,"project":[{"name":"Design principles underlying genetic switch architecture (DOC Fellowship)","grant_number":"24573","_id":"251EE76E-B435-11E9-9278-68D0E5697425"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"isi":["000470131200001"]}},{"file_date_updated":"2020-07-14T12:47:37Z","volume":73,"date_created":"2019-07-25T09:08:28Z","date_updated":"2023-08-29T06:43:58Z","related_material":{"record":[{"id":"9802","relation":"research_data","status":"public"}]},"author":[{"full_name":"Sachdeva, Himani","first_name":"Himani","last_name":"Sachdeva","id":"42377A0A-F248-11E8-B48F-1D18A9856A87"}],"publisher":"Wiley","department":[{"_id":"NiBa"}],"publication_status":"published","year":"2019","publication_identifier":{"eissn":["1558-5646"],"issn":["0014-3820"]},"month":"09","language":[{"iso":"eng"}],"doi":"10.1111/evo.13812","isi":1,"quality_controlled":"1","oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000481300600001"]},"issue":"9","abstract":[{"lang":"eng","text":"This paper analyzes how partial selfing in a large source population influences its ability to colonize a new habitat via the introduction of a few founder individuals. Founders experience inbreeding depression due to partially recessive deleterious alleles as well as maladaptation to the new environment due to selection on a large number of additive loci. I first introduce a simplified version of the Inbreeding History Model (Kelly, 2007) in order to characterize mutation‐selection balance in a large, partially selfing source population under selection involving multiple non‐identical loci. I then use individual‐based simulations to study the eco‐evolutionary dynamics of founders establishing in the new habitat under a model of hard selection. The study explores how selfing rate shapes establishment probabilities of founders via effects on both inbreeding depression and adaptability to the new environment, and also distinguishes the effects of selfing on the initial fitness of founders from its effects on the long‐term adaptive response of the populations they found. A high rate of (but not complete) selfing is found to aid establishment over a wide range of parameters, even in the absence of mate limitation. The sensitivity of the results to assumptions about the nature of polygenic selection are discussed."}],"type":"journal_article","file":[{"file_size":937573,"content_type":"application/pdf","creator":"kschuh","file_name":"2019_Evolution_Sachdeva.pdf","access_level":"open_access","date_updated":"2020-07-14T12:47:37Z","date_created":"2019-09-17T10:56:27Z","checksum":"772ce7035965153959b946a1033de1ca","relation":"main_file","file_id":"6881"}],"oa_version":"Published Version","intvolume":" 73","status":"public","ddc":["576"],"title":"Effect of partial selfing and polygenic selection on establishment in a new habitat","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"6680","article_processing_charge":"Yes (via OA deal)","has_accepted_license":"1","day":"01","scopus_import":"1","date_published":"2019-09-01T00:00:00Z","page":"1729-1745","citation":{"ama":"Sachdeva H. Effect of partial selfing and polygenic selection on establishment in a new habitat. Evolution. 2019;73(9):1729-1745. doi:10.1111/evo.13812","ista":"Sachdeva H. 2019. Effect of partial selfing and polygenic selection on establishment in a new habitat. Evolution. 73(9), 1729–1745.","apa":"Sachdeva, H. (2019). Effect of partial selfing and polygenic selection on establishment in a new habitat. Evolution. Wiley. https://doi.org/10.1111/evo.13812","ieee":"H. Sachdeva, “Effect of partial selfing and polygenic selection on establishment in a new habitat,” Evolution, vol. 73, no. 9. Wiley, pp. 1729–1745, 2019.","mla":"Sachdeva, Himani. “Effect of Partial Selfing and Polygenic Selection on Establishment in a New Habitat.” Evolution, vol. 73, no. 9, Wiley, 2019, pp. 1729–45, doi:10.1111/evo.13812.","short":"H. Sachdeva, Evolution 73 (2019) 1729–1745.","chicago":"Sachdeva, Himani. “Effect of Partial Selfing and Polygenic Selection on Establishment in a New Habitat.” Evolution. Wiley, 2019. https://doi.org/10.1111/evo.13812."},"publication":"Evolution"}]