[{"article_number":"3862","external_id":{"isi":["000644394800001"]},"article_processing_charge":"No","author":[{"id":"29B901B0-F248-11E8-B48F-1D18A9856A87","first_name":"Krisztina","last_name":"Ötvös","orcid":"0000-0002-5503-4983","full_name":"Ötvös, Krisztina"},{"full_name":"Miskolczi, Pál","last_name":"Miskolczi","first_name":"Pál"},{"last_name":"Marhavý","full_name":"Marhavý, Peter","orcid":"0000-0001-5227-5741","first_name":"Peter","id":"3F45B078-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Cruz-Ramírez","full_name":"Cruz-Ramírez, Alfredo","first_name":"Alfredo"},{"first_name":"Eva","id":"38F4F166-F248-11E8-B48F-1D18A9856A87","last_name":"Benková","orcid":"0000-0002-8510-9739","full_name":"Benková, Eva"},{"full_name":"Robert, Stéphanie","last_name":"Robert","first_name":"Stéphanie"},{"first_name":"László","last_name":"Bakó","full_name":"Bakó, László"}],"title":"Pickle recruits retinoblastoma related 1 to control lateral root formation in arabidopsis","citation":{"chicago":"Ötvös, Krisztina, Pál Miskolczi, Peter Marhavý, Alfredo Cruz-Ramírez, Eva Benková, Stéphanie Robert, and László Bakó. “Pickle Recruits Retinoblastoma Related 1 to Control Lateral Root Formation in Arabidopsis.” International Journal of Molecular Sciences. MDPI, 2021. https://doi.org/10.3390/ijms22083862.","ista":"Ötvös K, Miskolczi P, Marhavý P, Cruz-Ramírez A, Benková E, Robert S, Bakó L. 2021. Pickle recruits retinoblastoma related 1 to control lateral root formation in arabidopsis. International Journal of Molecular Sciences. 22(8), 3862.","mla":"Ötvös, Krisztina, et al. “Pickle Recruits Retinoblastoma Related 1 to Control Lateral Root Formation in Arabidopsis.” International Journal of Molecular Sciences, vol. 22, no. 8, 3862, MDPI, 2021, doi:10.3390/ijms22083862.","short":"K. Ötvös, P. Miskolczi, P. Marhavý, A. Cruz-Ramírez, E. Benková, S. Robert, L. Bakó, International Journal of Molecular Sciences 22 (2021).","ieee":"K. Ötvös et al., “Pickle recruits retinoblastoma related 1 to control lateral root formation in arabidopsis,” International Journal of Molecular Sciences, vol. 22, no. 8. MDPI, 2021.","ama":"Ötvös K, Miskolczi P, Marhavý P, et al. Pickle recruits retinoblastoma related 1 to control lateral root formation in arabidopsis. International Journal of Molecular Sciences. 2021;22(8). doi:10.3390/ijms22083862","apa":"Ötvös, K., Miskolczi, P., Marhavý, P., Cruz-Ramírez, A., Benková, E., Robert, S., & Bakó, L. (2021). Pickle recruits retinoblastoma related 1 to control lateral root formation in arabidopsis. International Journal of Molecular Sciences. MDPI. https://doi.org/10.3390/ijms22083862"},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","oa":1,"quality_controlled":"1","publisher":"MDPI","acknowledgement":"This research was supported by a postdoctoral fellowship of the Carl Tryggers Foundation (to K.Ö.) and by grants from Vetenskapsrådet (Nr.: 621-2004-2921 to L.B.) and VINNOVA (to L.B. and S.R.).\r\nWe thank Frederic Berger, Hidehiro Fukaki, Malcolm Bennett, Claudia Köhler, Jiri Friml for providing pRBR1::RBR1-RFP, ssl2-1, slr-1, pPKL::PKL-GFP seeds and the DR5 expressing vector, respectively. Authors are grateful to Hayashi Kenichiro for providing the auxinol compound and to Rishi Bhalerao for stimulating discussions. The technical help of Adeline Rigal and Thomas Vain with the auxinol experiments is much appreciated.","date_created":"2021-04-18T22:01:41Z","doi":"10.3390/ijms22083862","date_published":"2021-04-08T00:00:00Z","year":"2021","has_accepted_license":"1","isi":1,"publication":"International Journal of Molecular Sciences","day":"08","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"article_type":"original","type":"journal_article","status":"public","_id":"9332","file_date_updated":"2021-04-19T10:54:55Z","department":[{"_id":"EvBe"}],"date_updated":"2023-08-08T13:09:58Z","ddc":["570"],"scopus_import":"1","intvolume":" 22","month":"04","abstract":[{"text":"Lateral root (LR) formation is an example of a plant post-embryonic organogenesis event. LRs are issued from non-dividing cells entering consecutive steps of formative divisions, proliferation and elongation. The chromatin remodeling protein PICKLE (PKL) negatively regulates auxin-mediated LR formation through a mechanism that is not yet known. Here we show that PKL interacts with RETINOBLASTOMA-RELATED 1 (RBR1) to repress the LATERAL ORGAN BOUNDARIES-DOMAIN 16 (LBD16) promoter activity. Since LBD16 function is required for the formative division of LR founder cells, repression mediated by the PKL–RBR1 complex negatively regulates formative division and LR formation. Inhibition of LR formation by PKL–RBR1 is counteracted by auxin, indicating that, in addition to auxin-mediated transcriptional responses, the fine-tuned process of LR formation is also controlled at the chromatin level in an auxin-signaling dependent manner.","lang":"eng"}],"oa_version":"Published Version","volume":22,"issue":"8","publication_status":"published","publication_identifier":{"eissn":["1422-0067"],"issn":["1661-6596"]},"language":[{"iso":"eng"}],"file":[{"date_created":"2021-04-19T10:54:55Z","file_name":"2021_JourMolecularScience_Oetvoes.pdf","creator":"dernst","date_updated":"2021-04-19T10:54:55Z","file_size":2769717,"file_id":"9342","checksum":"26ada2531ad1f9c01a1664de0431f1fe","success":1,"access_level":"open_access","relation":"main_file","content_type":"application/pdf"}]},{"citation":{"chicago":"Mitrouskas, David Johannes. “A Note on the Fröhlich Dynamics in the Strong Coupling Limit.” Letters in Mathematical Physics. Springer Nature, 2021. https://doi.org/10.1007/s11005-021-01380-7.","ista":"Mitrouskas DJ. 2021. A note on the Fröhlich dynamics in the strong coupling limit. Letters in Mathematical Physics. 111, 45.","mla":"Mitrouskas, David Johannes. “A Note on the Fröhlich Dynamics in the Strong Coupling Limit.” Letters in Mathematical Physics, vol. 111, 45, Springer Nature, 2021, doi:10.1007/s11005-021-01380-7.","apa":"Mitrouskas, D. J. (2021). A note on the Fröhlich dynamics in the strong coupling limit. Letters in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s11005-021-01380-7","ama":"Mitrouskas DJ. A note on the Fröhlich dynamics in the strong coupling limit. Letters in Mathematical Physics. 2021;111. doi:10.1007/s11005-021-01380-7","short":"D.J. Mitrouskas, Letters in Mathematical Physics 111 (2021).","ieee":"D. J. Mitrouskas, “A note on the Fröhlich dynamics in the strong coupling limit,” Letters in Mathematical Physics, vol. 111. Springer Nature, 2021."},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"isi":["000637359300002"]},"article_processing_charge":"No","author":[{"last_name":"Mitrouskas","full_name":"Mitrouskas, David Johannes","first_name":"David Johannes","id":"cbddacee-2b11-11eb-a02e-a2e14d04e52d"}],"title":"A note on the Fröhlich dynamics in the strong coupling limit","article_number":"45","year":"2021","has_accepted_license":"1","isi":1,"publication":"Letters in Mathematical Physics","day":"05","date_created":"2021-04-18T22:01:41Z","date_published":"2021-04-05T00:00:00Z","doi":"10.1007/s11005-021-01380-7","acknowledgement":"I thank Marcel Griesemer for many interesting discussions about the Fröhlich polaron and also for valuable comments on this manuscript. Helpful discussions with Nikolai Leopold and Robert Seiringer are also gratefully acknowledged. This work was partially supported by the Deutsche Forschungsgemeinschaft (DFG) through the Research Training Group 1838: Spectral Theory and Dynamics of Quantum Systems. Open Access funding enabled and organized by Projekt DEAL.","oa":1,"quality_controlled":"1","publisher":"Springer Nature","date_updated":"2023-08-08T13:09:28Z","ddc":["510"],"file_date_updated":"2021-04-19T10:40:01Z","department":[{"_id":"RoSe"}],"_id":"9333","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"article_type":"original","type":"journal_article","status":"public","publication_status":"published","publication_identifier":{"issn":["03779017"],"eissn":["15730530"]},"language":[{"iso":"eng"}],"file":[{"file_name":"2021_LettersMathPhysics_Mitrouskas.pdf","date_created":"2021-04-19T10:40:01Z","file_size":438084,"date_updated":"2021-04-19T10:40:01Z","creator":"dernst","success":1,"file_id":"9341","checksum":"be56c0845a43c0c5c772ee0b5053f7d7","content_type":"application/pdf","relation":"main_file","access_level":"open_access"}],"volume":111,"abstract":[{"lang":"eng","text":"We revise a previous result about the Fröhlich dynamics in the strong coupling limit obtained in Griesemer (Rev Math Phys 29(10):1750030, 2017). In the latter it was shown that the Fröhlich time evolution applied to the initial state φ0⊗ξα, where φ0 is the electron ground state of the Pekar energy functional and ξα the associated coherent state of the phonons, can be approximated by a global phase for times small compared to α2. In the present note we prove that a similar approximation holds for t=O(α2) if one includes a nontrivial effective dynamics for the phonons that is generated by an operator proportional to α−2 and quadratic in creation and annihilation operators. Our result implies that the electron ground state remains close to its initial state for times of order α2, while the phonon fluctuations around the coherent state ξα can be described by a time-dependent Bogoliubov transformation."}],"oa_version":"Published Version","scopus_import":"1","intvolume":" 111","month":"04"},{"oa":1,"quality_controlled":"1","publisher":"Society for Industrial and Applied Mathematics","acknowledgement":"This research was supported by the DFG Collaborative Research Center TRR 109, “Discretization in Geometry and Dynamics”.","page":"60-87","date_created":"2021-04-18T22:01:42Z","doi":"10.1137/19M1300017","date_published":"2021-01-01T00:00:00Z","year":"2021","isi":1,"publication":"SIAM Journal on Numerical Analysis","day":"01","external_id":{"isi":["000625044600003"],"arxiv":["1911.04185"]},"article_processing_charge":"No","author":[{"last_name":"Fischer","orcid":"0000-0002-0479-558X","full_name":"Fischer, Julian L","first_name":"Julian L","id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Daniel","last_name":"Matthes","full_name":"Matthes, Daniel"}],"title":"The waiting time phenomenon in spatially discretized porous medium and thin film equations","citation":{"short":"J.L. Fischer, D. Matthes, SIAM Journal on Numerical Analysis 59 (2021) 60–87.","ieee":"J. L. Fischer and D. Matthes, “The waiting time phenomenon in spatially discretized porous medium and thin film equations,” SIAM Journal on Numerical Analysis, vol. 59, no. 1. Society for Industrial and Applied Mathematics, pp. 60–87, 2021.","ama":"Fischer JL, Matthes D. The waiting time phenomenon in spatially discretized porous medium and thin film equations. SIAM Journal on Numerical Analysis. 2021;59(1):60-87. doi:10.1137/19M1300017","apa":"Fischer, J. L., & Matthes, D. (2021). The waiting time phenomenon in spatially discretized porous medium and thin film equations. SIAM Journal on Numerical Analysis. Society for Industrial and Applied Mathematics. https://doi.org/10.1137/19M1300017","mla":"Fischer, Julian L., and Daniel Matthes. “The Waiting Time Phenomenon in Spatially Discretized Porous Medium and Thin Film Equations.” SIAM Journal on Numerical Analysis, vol. 59, no. 1, Society for Industrial and Applied Mathematics, 2021, pp. 60–87, doi:10.1137/19M1300017.","ista":"Fischer JL, Matthes D. 2021. The waiting time phenomenon in spatially discretized porous medium and thin film equations. SIAM Journal on Numerical Analysis. 59(1), 60–87.","chicago":"Fischer, Julian L, and Daniel Matthes. “The Waiting Time Phenomenon in Spatially Discretized Porous Medium and Thin Film Equations.” SIAM Journal on Numerical Analysis. Society for Industrial and Applied Mathematics, 2021. https://doi.org/10.1137/19M1300017."},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","main_file_link":[{"url":"https://arxiv.org/abs/1911.04185","open_access":"1"}],"scopus_import":"1","intvolume":" 59","month":"01","abstract":[{"text":"Various degenerate diffusion equations exhibit a waiting time phenomenon: depending on the “flatness” of the compactly supported initial datum at the boundary of the support, the support of the solution may not expand for a certain amount of time. We show that this phenomenon is captured by particular Lagrangian discretizations of the porous medium and the thin film equations, and we obtain sufficient criteria for the occurrence of waiting times that are consistent with the known ones for the original PDEs. For the spatially discrete solution, the waiting time phenomenon refers to a deviation of the edge of support from its original position by a quantity comparable to the mesh width, over a mesh-independent time interval. Our proof is based on estimates on the fluid velocity in Lagrangian coordinates. Combining weighted entropy estimates with an iteration technique à la Stampacchia leads to upper bounds on free boundary propagation. Numerical simulations show that the phenomenon is already clearly visible for relatively coarse discretizations.","lang":"eng"}],"oa_version":"Preprint","issue":"1","volume":59,"publication_status":"published","publication_identifier":{"issn":["0036-1429"]},"language":[{"iso":"eng"}],"article_type":"original","type":"journal_article","status":"public","_id":"9335","department":[{"_id":"JuFi"}],"date_updated":"2023-08-08T13:10:40Z"},{"article_number":"041501","project":[{"call_identifier":"H2020","_id":"B6FC0238-B512-11E9-945C-1524E6697425","grant_number":"680037","name":"Coordination of Patterning And Growth In the Spinal Cord"},{"name":"Active mechano-chemical description of the cell cytoskeleton","grant_number":"P31639","call_identifier":"FWF","_id":"268294B6-B435-11E9-9278-68D0E5697425"},{"name":"Design Principles of Branching Morphogenesis","grant_number":"851288","call_identifier":"H2020","_id":"05943252-7A3F-11EA-A408-12923DDC885E"}],"citation":{"chicago":"Lenne, Pierre François, Edwin Munro, Idse Heemskerk, Aryeh Warmflash, Laura Bocanegra, Kasumi Kishi, Anna Kicheva, et al. “Roadmap for the Multiscale Coupling of Biochemical and Mechanical Signals during Development.” Physical Biology. IOP Publishing, 2021. https://doi.org/10.1088/1478-3975/abd0db.","ista":"Lenne PF, Munro E, Heemskerk I, Warmflash A, Bocanegra L, Kishi K, Kicheva A, Long Y, Fruleux A, Boudaoud A, Saunders TE, Caldarelli P, Michaut A, Gros J, Maroudas-Sacks Y, Keren K, Hannezo EB, Gartner ZJ, Stormo B, Gladfelter A, Rodrigues A, Shyer A, Minc N, Maître JL, Di Talia S, Khamaisi B, Sprinzak D, Tlili S. 2021. Roadmap for the multiscale coupling of biochemical and mechanical signals during development. Physical biology. 18(4), 041501.","mla":"Lenne, Pierre François, et al. “Roadmap for the Multiscale Coupling of Biochemical and Mechanical Signals during Development.” Physical Biology, vol. 18, no. 4, 041501, IOP Publishing, 2021, doi:10.1088/1478-3975/abd0db.","ieee":"P. F. Lenne et al., “Roadmap for the multiscale coupling of biochemical and mechanical signals during development,” Physical biology, vol. 18, no. 4. IOP Publishing, 2021.","short":"P.F. Lenne, E. Munro, I. Heemskerk, A. Warmflash, L. Bocanegra, K. Kishi, A. Kicheva, Y. Long, A. Fruleux, A. Boudaoud, T.E. Saunders, P. Caldarelli, A. Michaut, J. Gros, Y. Maroudas-Sacks, K. Keren, E.B. Hannezo, Z.J. Gartner, B. Stormo, A. Gladfelter, A. Rodrigues, A. Shyer, N. Minc, J.L. Maître, S. Di Talia, B. Khamaisi, D. Sprinzak, S. Tlili, Physical Biology 18 (2021).","apa":"Lenne, P. F., Munro, E., Heemskerk, I., Warmflash, A., Bocanegra, L., Kishi, K., … Tlili, S. (2021). Roadmap for the multiscale coupling of biochemical and mechanical signals during development. Physical Biology. IOP Publishing. https://doi.org/10.1088/1478-3975/abd0db","ama":"Lenne PF, Munro E, Heemskerk I, et al. Roadmap for the multiscale coupling of biochemical and mechanical signals during development. Physical biology. 2021;18(4). doi:10.1088/1478-3975/abd0db"},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","external_id":{"isi":["000640396400001"],"pmid":["33276350"]},"article_processing_charge":"No","author":[{"last_name":"Lenne","full_name":"Lenne, Pierre François","first_name":"Pierre François"},{"first_name":"Edwin","last_name":"Munro","full_name":"Munro, Edwin"},{"first_name":"Idse","full_name":"Heemskerk, Idse","last_name":"Heemskerk"},{"first_name":"Aryeh","full_name":"Warmflash, Aryeh","last_name":"Warmflash"},{"id":"4896F754-F248-11E8-B48F-1D18A9856A87","first_name":"Laura","full_name":"Bocanegra, Laura","last_name":"Bocanegra"},{"id":"3065DFC4-F248-11E8-B48F-1D18A9856A87","first_name":"Kasumi","full_name":"Kishi, Kasumi","last_name":"Kishi"},{"full_name":"Kicheva, Anna","orcid":"0000-0003-4509-4998","last_name":"Kicheva","id":"3959A2A0-F248-11E8-B48F-1D18A9856A87","first_name":"Anna"},{"full_name":"Long, Yuchen","last_name":"Long","first_name":"Yuchen"},{"first_name":"Antoine","last_name":"Fruleux","full_name":"Fruleux, Antoine"},{"full_name":"Boudaoud, Arezki","last_name":"Boudaoud","first_name":"Arezki"},{"first_name":"Timothy E.","full_name":"Saunders, Timothy E.","last_name":"Saunders"},{"full_name":"Caldarelli, Paolo","last_name":"Caldarelli","first_name":"Paolo"},{"last_name":"Michaut","full_name":"Michaut, Arthur","first_name":"Arthur"},{"first_name":"Jerome","last_name":"Gros","full_name":"Gros, Jerome"},{"last_name":"Maroudas-Sacks","full_name":"Maroudas-Sacks, Yonit","first_name":"Yonit"},{"first_name":"Kinneret","last_name":"Keren","full_name":"Keren, Kinneret"},{"last_name":"Hannezo","full_name":"Hannezo, Edouard B","orcid":"0000-0001-6005-1561","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","first_name":"Edouard B"},{"first_name":"Zev J.","full_name":"Gartner, Zev J.","last_name":"Gartner"},{"first_name":"Benjamin","last_name":"Stormo","full_name":"Stormo, Benjamin"},{"first_name":"Amy","full_name":"Gladfelter, Amy","last_name":"Gladfelter"},{"last_name":"Rodrigues","full_name":"Rodrigues, Alan","first_name":"Alan"},{"first_name":"Amy","full_name":"Shyer, Amy","last_name":"Shyer"},{"last_name":"Minc","full_name":"Minc, Nicolas","first_name":"Nicolas"},{"full_name":"Maître, Jean Léon","last_name":"Maître","first_name":"Jean Léon"},{"last_name":"Di Talia","full_name":"Di Talia, Stefano","first_name":"Stefano"},{"last_name":"Khamaisi","full_name":"Khamaisi, Bassma","first_name":"Bassma"},{"full_name":"Sprinzak, David","last_name":"Sprinzak","first_name":"David"},{"first_name":"Sham","full_name":"Tlili, Sham","last_name":"Tlili"}],"title":"Roadmap for the multiscale coupling of biochemical and mechanical signals during development","acknowledgement":"The AK group is supported by IST Austria and by the ERC under European Union Horizon 2020 research and innovation programme Grant 680037. Apologies to those whose work could not be mentioned due to limited space. We thank all my lab members, both past and present, for stimulating discussion. This work was funded by a Singapore Ministry of Education Tier 3 Grant, MOE2016-T3-1-005. We thank Francis Corson for continuous discussion and collaboration contributing to these views and for figure 4(A). PC is sponsored by the Institut Pasteur and the European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie Grant Agreement No. 665807. Research in JG's laboratory is funded by the European Research Council under the European Union's Seventh Framework Programme (FP7/2007-2013)/ERC Grant Agreement No. 337635, Institut Pasteur, CNRS, Cercle FSER, Fondation pour la Recherche Medicale, the Vallee Foundation and the ANR-19-CE-13-0024 Grant. We thank Erez Braun and Alex Mogilner for comments on the manuscript and Niv Ierushalmi for help with figure 5. This project has received funding from the European Union's Horizon 2020 research and innovation programme under Grant Agreement No. ERC-2018-COG Grant 819174-HydraMechanics awarded to KK. EH thanks all lab members, as well as Pierre Recho, Tsuyoshi Hirashima, Diana Pinheiro and Carl-Philip Heisenberg, for fruitful discussions on these topics—and apologize for not being able to cite many very relevant publications due to the strict 10-reference limit. EH acknowledges the support of Austrian Science Fund (FWF) (P 31639) and the European Research Council under the European Union's Horizon 2020 Research and Innovation Programme Grant Agreements (851288). The authors acknowledge the inspiring scientists whose work could not be cited in this perspective due to space constraints; the members of the Gartner Lab for helpful discussions; the Barbara and Gerson Bakar Foundation, the Chan Zuckerberg Biohub Investigators Programme, the National Institute of Health, and the Centre for Cellular Construction, an NSF Science and Technology Centre. The Minc laboratory is currently funded by the CNRS and the European Research Council (CoG Forcaster No. 647073). Research in the lab of J-LM is supported by the Institut Curie, the Centre National de la Recherche Scientifique (CNRS), the Institut National de la Santé Et de la Recherche Médicale (INSERM), and is funded by grants from the ATIP-Avenir programme, the Fondation Schlumberger pour l'Éducation et la Recherche via the Fondation pour la Recherche Médicale, the European Research Council Starting Grant ERC-2017-StG 757557, the European Molecular Biology Organization Young Investigator programme (EMBO YIP), the INSERM transversal programme Human Development Cell Atlas (HuDeCA), Paris Sciences Lettres (PSL) 'nouvelle équipe' and QLife (17-CONV-0005) grants and Labex DEEP (ANR-11-LABX-0044) which are part of the IDEX PSL (ANR-10-IDEX-0001-02). We acknowledge useful discussions with Massimo Vergassola, Sebastian Streichan and my lab members. Work in my laboratory on Drosophila embryogenesis is partly supported by NIH-R01GM122936. The authors acknowledge the support by a grant from the European Research Council (Grant No. 682161). Lenne group is funded by a grant from the 'Investissements d'Avenir' French Government programme managed by the French National Research Agency (ANR-16-CONV-0001) and by the Excellence Initiative of Aix-Marseille University—A*MIDEX, and ANR projects MechaResp (ANR-17-CE13-0032) and AdGastrulo (ANR-19-CE13-0022).","oa":1,"publisher":"IOP Publishing","quality_controlled":"1","year":"2021","has_accepted_license":"1","isi":1,"publication":"Physical biology","day":"14","date_created":"2021-04-25T22:01:29Z","doi":"10.1088/1478-3975/abd0db","date_published":"2021-04-14T00:00:00Z","_id":"9349","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"article_type":"original","type":"journal_article","status":"public","date_updated":"2023-08-08T13:15:46Z","ddc":["570"],"department":[{"_id":"AnKi"},{"_id":"EdHa"}],"file_date_updated":"2021-04-27T08:38:35Z","abstract":[{"text":"The way in which interactions between mechanics and biochemistry lead to the emergence of complex cell and tissue organization is an old question that has recently attracted renewed interest from biologists, physicists, mathematicians and computer scientists. Rapid advances in optical physics, microscopy and computational image analysis have greatly enhanced our ability to observe and quantify spatiotemporal patterns of signalling, force generation, deformation, and flow in living cells and tissues. Powerful new tools for genetic, biophysical and optogenetic manipulation are allowing us to perturb the underlying machinery that generates these patterns in increasingly sophisticated ways. Rapid advances in theory and computing have made it possible to construct predictive models that describe how cell and tissue organization and dynamics emerge from the local coupling of biochemistry and mechanics. Together, these advances have opened up a wealth of new opportunities to explore how mechanochemical patterning shapes organismal development. In this roadmap, we present a series of forward-looking case studies on mechanochemical patterning in development, written by scientists working at the interface between the physical and biological sciences, and covering a wide range of spatial and temporal scales, organisms, and modes of development. Together, these contributions highlight the many ways in which the dynamic coupling of mechanics and biochemistry shapes biological dynamics: from mechanoenzymes that sense force to tune their activity and motor output, to collectives of cells in tissues that flow and redistribute biochemical signals during development.","lang":"eng"}],"pmid":1,"oa_version":"Published Version","scopus_import":"1","intvolume":" 18","month":"04","publication_status":"published","publication_identifier":{"eissn":["1478-3975"]},"language":[{"iso":"eng"}],"file":[{"file_size":6296324,"date_updated":"2021-04-27T08:38:35Z","creator":"cziletti","file_name":"2021_PhysBio_Lenne.pdf","date_created":"2021-04-27T08:38:35Z","content_type":"application/pdf","relation":"main_file","access_level":"open_access","success":1,"checksum":"4f52082549d3561c4c15d4d8d84ca5d8","file_id":"9355"}],"ec_funded":1,"volume":18,"issue":"4","related_material":{"record":[{"id":"13081","status":"public","relation":"dissertation_contains"}]}},{"article_number":"eabf2690","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","citation":{"ieee":"J. Duan et al., “Enabling propagation of anisotropic polaritons along forbidden directions via a topological transition,” Science Advances, vol. 7, no. 14. AAAS, 2021.","short":"J. Duan, G. Álvarez-Pérez, K.V. Voronin, I. Prieto Gonzalez, J. Taboada-Gutiérrez, V.S. Volkov, J. Martín-Sánchez, A.Y. Nikitin, P. Alonso-González, Science Advances 7 (2021).","apa":"Duan, J., Álvarez-Pérez, G., Voronin, K. V., Prieto Gonzalez, I., Taboada-Gutiérrez, J., Volkov, V. S., … Alonso-González, P. (2021). Enabling propagation of anisotropic polaritons along forbidden directions via a topological transition. Science Advances. AAAS. https://doi.org/10.1126/sciadv.abf2690","ama":"Duan J, Álvarez-Pérez G, Voronin KV, et al. Enabling propagation of anisotropic polaritons along forbidden directions via a topological transition. Science Advances. 2021;7(14). doi:10.1126/sciadv.abf2690","mla":"Duan, J., et al. “Enabling Propagation of Anisotropic Polaritons along Forbidden Directions via a Topological Transition.” Science Advances, vol. 7, no. 14, eabf2690, AAAS, 2021, doi:10.1126/sciadv.abf2690.","ista":"Duan J, Álvarez-Pérez G, Voronin KV, Prieto Gonzalez I, Taboada-Gutiérrez J, Volkov VS, Martín-Sánchez J, Nikitin AY, Alonso-González P. 2021. Enabling propagation of anisotropic polaritons along forbidden directions via a topological transition. Science Advances. 7(14), eabf2690.","chicago":"Duan, J., G. Álvarez-Pérez, K. V. Voronin, Ivan Prieto Gonzalez, J. Taboada-Gutiérrez, V. S. Volkov, J. Martín-Sánchez, A. Y. Nikitin, and P. Alonso-González. “Enabling Propagation of Anisotropic Polaritons along Forbidden Directions via a Topological Transition.” Science Advances. AAAS, 2021. https://doi.org/10.1126/sciadv.abf2690."},"title":"Enabling propagation of anisotropic polaritons along forbidden directions via a topological transition","external_id":{"pmid":["33811076"],"isi":["000636455600027"]},"article_processing_charge":"No","author":[{"full_name":"Duan, J.","last_name":"Duan","first_name":"J."},{"first_name":"G.","last_name":"Álvarez-Pérez","full_name":"Álvarez-Pérez, G."},{"full_name":"Voronin, K. V.","last_name":"Voronin","first_name":"K. V."},{"id":"2A307FE2-F248-11E8-B48F-1D18A9856A87","first_name":"Ivan","last_name":"Prieto Gonzalez","orcid":"0000-0002-7370-5357","full_name":"Prieto Gonzalez, Ivan"},{"first_name":"J.","last_name":"Taboada-Gutiérrez","full_name":"Taboada-Gutiérrez, J."},{"full_name":"Volkov, V. S.","last_name":"Volkov","first_name":"V. S."},{"last_name":"Martín-Sánchez","full_name":"Martín-Sánchez, J.","first_name":"J."},{"full_name":"Nikitin, A. Y.","last_name":"Nikitin","first_name":"A. Y."},{"first_name":"P.","full_name":"Alonso-González, P.","last_name":"Alonso-González"}],"acknowledgement":"G.Á.-P. and J.T.-G. acknowledge support through the Severo Ochoa Program from the government of the Principality of Asturias (grant nos. PA20-PF-BP19-053 and PA-18-PF-BP17-126, respectively). K.V.V. and V.S.V. acknowledge the Ministry of Science and Higher Education of the Russian Federation (no. 0714-2020-0002). J. M.-S. acknowledges financial support through the Ramón y Cajal Program from the government of Spain and FSE (RYC2018-026196-I). A.Y.N. acknowledges the Spanish Ministry of Science, Innovation and Universities (national project no. MAT201788358-C3-3-R), and the Basque Department of Education (PIBA-2020-1-0014). P.A.-G. acknowledges support from the European Research Council under starting grant no. 715496, 2DNANOPTICA. ","oa":1,"quality_controlled":"1","publisher":"AAAS","publication":"Science Advances","day":"02","year":"2021","has_accepted_license":"1","isi":1,"date_created":"2021-04-18T22:01:42Z","date_published":"2021-04-02T00:00:00Z","doi":"10.1126/sciadv.abf2690","_id":"9334","status":"public","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","short":"CC BY-NC (4.0)"},"article_type":"original","type":"journal_article","ddc":["530"],"date_updated":"2023-08-08T13:11:31Z","file_date_updated":"2021-04-19T11:17:29Z","department":[{"_id":"NanoFab"}],"pmid":1,"oa_version":"Published Version","abstract":[{"text":"Polaritons with directional in-plane propagation and ultralow losses in van der Waals (vdW) crystals promise unprecedented manipulation of light at the nanoscale. However, these polaritons present a crucial limitation: their directional propagation is intrinsically determined by the crystal structure of the host material, imposing forbidden directions of propagation. Here, we demonstrate that directional polaritons (in-plane hyperbolic phonon polaritons) in a vdW crystal (α-phase molybdenum trioxide) can be directed along forbidden directions by inducing an optical topological transition, which emerges when the slab is placed on a substrate with a given negative permittivity (4H–silicon carbide). By visualizing the transition in real space, we observe exotic polaritonic states between mutually orthogonal hyperbolic regimes, which unveil the topological origin of the transition: a gap opening in the dispersion. This work provides insights into optical topological transitions in vdW crystals, which introduce a route to direct light at the nanoscale.","lang":"eng"}],"intvolume":" 7","month":"04","scopus_import":"1","language":[{"iso":"eng"}],"file":[{"date_created":"2021-04-19T11:17:29Z","file_name":"2021_ScienceAdv_Duan.pdf","creator":"dernst","date_updated":"2021-04-19T11:17:29Z","file_size":717489,"checksum":"4b383d4a1d484a71bbc64ecf401bbdbb","file_id":"9343","success":1,"access_level":"open_access","relation":"main_file","content_type":"application/pdf"}],"publication_status":"published","publication_identifier":{"eissn":["23752548"]},"volume":7,"issue":"14"},{"publication_identifier":{"issn":["1424-0637"]},"publication_status":"published","file":[{"relation":"main_file","access_level":"open_access","content_type":"application/pdf","success":1,"checksum":"1a0fb963f2f415ba470881a794f20eb6","file_id":"10143","creator":"cchlebak","file_size":522669,"date_updated":"2021-10-15T11:15:40Z","file_name":"2021_Annales_Kirkpatrick.pdf","date_created":"2021-10-15T11:15:40Z"}],"language":[{"iso":"eng"}],"volume":22,"ec_funded":1,"abstract":[{"lang":"eng","text":"We consider the many-body quantum evolution of a factorized initial data, in the mean-field regime. We show that fluctuations around the limiting Hartree dynamics satisfy large deviation estimates that are consistent with central limit theorems that have been established in the last years. "}],"oa_version":"Published Version","scopus_import":"1","month":"04","intvolume":" 22","date_updated":"2023-08-08T13:14:40Z","ddc":["530"],"file_date_updated":"2021-10-15T11:15:40Z","department":[{"_id":"RoSe"}],"_id":"9351","article_type":"original","type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"status":"public","isi":1,"has_accepted_license":"1","year":"2021","day":"08","publication":"Annales Henri Poincare","page":"2595-2618","date_published":"2021-04-08T00:00:00Z","doi":"10.1007/s00023-021-01044-1","date_created":"2021-04-25T22:01:30Z","acknowledgement":"The authors gratefully acknowledge Gérard Ben Arous for suggesting this kind of result. K.L.K. was partially supported by NSF CAREER Award DMS-125479 and a Simons Sabbatical Fellowship. S.R. acknowledges funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement No. 754411. B. S. gratefully acknowledges partial support from the NCCR SwissMAP, from the Swiss National Science Foundation through the Grant “Dynamical and energetic properties of Bose–Einstein condensates” and from the European Research Council through the ERC-AdG CLaQS. Funding Open access funding provided by Institute of Science and Technology (IST Austria).","quality_controlled":"1","publisher":"Springer Nature","oa":1,"citation":{"mla":"Kirkpatrick, Kay, et al. “A Large Deviation Principle in Many-Body Quantum Dynamics.” Annales Henri Poincare, vol. 22, Springer Nature, 2021, pp. 2595–618, doi:10.1007/s00023-021-01044-1.","ieee":"K. Kirkpatrick, S. A. E. Rademacher, and B. Schlein, “A large deviation principle in many-body quantum dynamics,” Annales Henri Poincare, vol. 22. Springer Nature, pp. 2595–2618, 2021.","short":"K. Kirkpatrick, S.A.E. Rademacher, B. Schlein, Annales Henri Poincare 22 (2021) 2595–2618.","apa":"Kirkpatrick, K., Rademacher, S. A. E., & Schlein, B. (2021). A large deviation principle in many-body quantum dynamics. Annales Henri Poincare. Springer Nature. https://doi.org/10.1007/s00023-021-01044-1","ama":"Kirkpatrick K, Rademacher SAE, Schlein B. A large deviation principle in many-body quantum dynamics. Annales Henri Poincare. 2021;22:2595-2618. doi:10.1007/s00023-021-01044-1","chicago":"Kirkpatrick, Kay, Simone Anna Elvira Rademacher, and Benjamin Schlein. “A Large Deviation Principle in Many-Body Quantum Dynamics.” Annales Henri Poincare. Springer Nature, 2021. https://doi.org/10.1007/s00023-021-01044-1.","ista":"Kirkpatrick K, Rademacher SAE, Schlein B. 2021. A large deviation principle in many-body quantum dynamics. Annales Henri Poincare. 22, 2595–2618."},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","author":[{"first_name":"Kay","full_name":"Kirkpatrick, Kay","last_name":"Kirkpatrick"},{"last_name":"Rademacher","orcid":"0000-0001-5059-4466","full_name":"Rademacher, Simone Anna Elvira","id":"856966FE-A408-11E9-977E-802DE6697425","first_name":"Simone Anna Elvira"},{"first_name":"Benjamin","last_name":"Schlein","full_name":"Schlein, Benjamin"}],"article_processing_charge":"Yes (via OA deal)","external_id":{"isi":["000638022600001"],"arxiv":["2010.13754"]},"title":"A large deviation principle in many-body quantum dynamics","project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","grant_number":"754411","name":"ISTplus - Postdoctoral Fellowships"},{"name":"IST Austria Open Access Fund","_id":"B67AFEDC-15C9-11EA-A837-991A96BB2854"}]},{"isi":1,"year":"2021","day":"05","publication":"FEBS Journal","date_published":"2021-04-05T00:00:00Z","doi":"10.1111/febs.15823","date_created":"2021-04-18T22:01:43Z","acknowledgement":"The authors thank Nicholas Asby of the University of Chicago for valuable comments on an earlier version of this work. A.P.S. was partially supported by the NARSAD Young Investigator Grant 27705. S.J.H was supported by the National Institutes of Health grant R35GM133732.","quality_controlled":"1","publisher":"Wiley","oa":1,"citation":{"mla":"Sarabipour, Sarvenaz, et al. “Building and Sustaining Mentor Interactions as a Mentee.” FEBS Journal, Wiley, 2021, doi:10.1111/febs.15823.","apa":"Sarabipour, S., Hainer, S. J., Arslan, F. N., De Winde, C. M., Furlong, E., Bielczyk, N., … Davla, S. (2021). Building and sustaining mentor interactions as a mentee. FEBS Journal. Wiley. https://doi.org/10.1111/febs.15823","ama":"Sarabipour S, Hainer SJ, Arslan FN, et al. Building and sustaining mentor interactions as a mentee. FEBS Journal. 2021. doi:10.1111/febs.15823","short":"S. Sarabipour, S.J. Hainer, F.N. Arslan, C.M. De Winde, E. Furlong, N. Bielczyk, N.M. Jadavji, A.P. Shah, S. Davla, FEBS Journal (2021).","ieee":"S. Sarabipour et al., “Building and sustaining mentor interactions as a mentee,” FEBS Journal. Wiley, 2021.","chicago":"Sarabipour, Sarvenaz, Sarah J. Hainer, Feyza N Arslan, Charlotte M. De Winde, Emily Furlong, Natalia Bielczyk, Nafisa M. Jadavji, Aparna P. Shah, and Sejal Davla. “Building and Sustaining Mentor Interactions as a Mentee.” FEBS Journal. Wiley, 2021. https://doi.org/10.1111/febs.15823.","ista":"Sarabipour S, Hainer SJ, Arslan FN, De Winde CM, Furlong E, Bielczyk N, Jadavji NM, Shah AP, Davla S. 2021. Building and sustaining mentor interactions as a mentee. FEBS Journal."},"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","author":[{"first_name":"Sarvenaz","full_name":"Sarabipour, Sarvenaz","last_name":"Sarabipour"},{"last_name":"Hainer","full_name":"Hainer, Sarah J.","first_name":"Sarah J."},{"id":"49DA7910-F248-11E8-B48F-1D18A9856A87","first_name":"Feyza N","orcid":"0000-0001-5809-9566","full_name":"Arslan, Feyza N","last_name":"Arslan"},{"first_name":"Charlotte M.","last_name":"De Winde","full_name":"De Winde, Charlotte M."},{"full_name":"Furlong, Emily","last_name":"Furlong","first_name":"Emily"},{"last_name":"Bielczyk","full_name":"Bielczyk, Natalia","first_name":"Natalia"},{"first_name":"Nafisa M.","full_name":"Jadavji, Nafisa M.","last_name":"Jadavji"},{"full_name":"Shah, Aparna P.","last_name":"Shah","first_name":"Aparna P."},{"first_name":"Sejal","last_name":"Davla","full_name":"Davla, Sejal"}],"article_processing_charge":"No","external_id":{"isi":["000636678800001"],"pmid":["33818917"]},"title":"Building and sustaining mentor interactions as a mentee","publication_identifier":{"issn":["1742-464X"],"eissn":["1742-4658"]},"publication_status":"published","language":[{"iso":"eng"}],"abstract":[{"text":"Mentorship is experience and/or knowledge‐based guidance. Mentors support, sponsor and advocate for mentees. Having one or more mentors when you seek advice can significantly influence and improve your research endeavours, well‐being and career development. Positive mentee–mentor relationships are vital for maintaining work–life balance and success in careers. Early‐career researchers (ECRs), in particular, can benefit from mentorship to navigate challenges in academic and nonacademic life and careers. Yet, strategies for selecting mentors and maintaining interactions with them are often underdiscussed within research environments. In this Words of Advice, we provide recommendations for ECRs to seek and manage mentorship interactions. Our article draws from our experiences as ECRs and published work, to provide suggestions for mentees to proactively promote beneficial mentorship interactions. The recommended practices highlight the importance of identifying mentorship needs, planning and selecting multiple and diverse mentors, setting goals, and maintaining constructive, and mutually beneficial working relationships with mentors.","lang":"eng"}],"oa_version":"Published Version","pmid":1,"alternative_title":["Words of Advice"],"scopus_import":"1","main_file_link":[{"url":"https://doi.org/10.1111/febs.15823","open_access":"1"}],"month":"04","date_updated":"2023-08-08T13:12:55Z","department":[{"_id":"CaHe"}],"_id":"9336","article_type":"original","type":"journal_article","status":"public"},{"related_material":{"record":[{"relation":"dissertation_contains","status":"public","id":"12368"}]},"volume":120,"language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1542-0086"],"issn":["0006-3495"]},"publication_status":"published","month":"10","intvolume":" 120","scopus_import":"1","main_file_link":[{"open_access":"1","url":"https://scholarlypublications.universiteitleiden.nl/access/item%3A3251048/view"}],"pmid":1,"oa_version":"Published Version","abstract":[{"lang":"eng","text":"Intercellular adhesion is the key to multicellularity, and its malfunction plays an important role in various developmental and disease-related processes. Although it has been intensively studied by both biologists and physicists, a commonly accepted definition of cell-cell adhesion is still being debated. Cell-cell adhesion has been described at the molecular scale as a function of adhesion receptors controlling binding affinity, at the cellular scale as resistance to detachment forces or modulation of surface tension, and at the tissue scale as a regulator of cellular rearrangements and morphogenesis. In this review, we aim to summarize and discuss recent advances in the molecular, cellular, and theoretical description of cell-cell adhesion, ranging from biomimetic models to the complexity of cells and tissues in an organismal context. In particular, we will focus on cadherin-mediated cell-cell adhesion and the role of adhesion signaling and mechanosensation therein, two processes central for understanding the biological and physical basis of cell-cell adhesion."}],"department":[{"_id":"CaHe"}],"date_updated":"2023-08-08T13:14:10Z","status":"public","type":"journal_article","article_type":"original","_id":"9350","date_published":"2021-10-05T00:00:00Z","doi":"10.1016/j.bpj.2021.03.025","date_created":"2021-04-25T22:01:30Z","page":"4182-4192","day":"05","publication":"Biophysical Journal","isi":1,"year":"2021","publisher":"Biophysical Society","quality_controlled":"1","oa":1,"acknowledgement":"T.S. acknowledges funding by the research program “The Active Matter Physics of Collective Metastasis,” which is financed by the Dutch Research Council (NWO).","title":"Holding it together: when cadherin meets cadherin","author":[{"full_name":"Arslan, Feyza N","orcid":"0000-0001-5809-9566","last_name":"Arslan","id":"49DA7910-F248-11E8-B48F-1D18A9856A87","first_name":"Feyza N"},{"first_name":"Julia","full_name":"Eckert, Julia","last_name":"Eckert"},{"full_name":"Schmidt, Thomas","last_name":"Schmidt","first_name":"Thomas"},{"first_name":"Carl-Philipp J","id":"39427864-F248-11E8-B48F-1D18A9856A87","full_name":"Heisenberg, Carl-Philipp J","orcid":"0000-0002-0912-4566","last_name":"Heisenberg"}],"external_id":{"pmid":["33794149"],"isi":["000704646900006"]},"article_processing_charge":"No","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","citation":{"mla":"Arslan, Feyza N., et al. “Holding It Together: When Cadherin Meets Cadherin.” Biophysical Journal, vol. 120, Biophysical Society, 2021, pp. 4182–92, doi:10.1016/j.bpj.2021.03.025.","apa":"Arslan, F. N., Eckert, J., Schmidt, T., & Heisenberg, C.-P. J. (2021). Holding it together: when cadherin meets cadherin. Biophysical Journal. Biophysical Society. https://doi.org/10.1016/j.bpj.2021.03.025","ama":"Arslan FN, Eckert J, Schmidt T, Heisenberg C-PJ. Holding it together: when cadherin meets cadherin. Biophysical Journal. 2021;120:4182-4192. doi:10.1016/j.bpj.2021.03.025","ieee":"F. N. Arslan, J. Eckert, T. Schmidt, and C.-P. J. Heisenberg, “Holding it together: when cadherin meets cadherin,” Biophysical Journal, vol. 120. Biophysical Society, pp. 4182–4192, 2021.","short":"F.N. Arslan, J. Eckert, T. Schmidt, C.-P.J. Heisenberg, Biophysical Journal 120 (2021) 4182–4192.","chicago":"Arslan, Feyza N, Julia Eckert, Thomas Schmidt, and Carl-Philipp J Heisenberg. “Holding It Together: When Cadherin Meets Cadherin.” Biophysical Journal. Biophysical Society, 2021. https://doi.org/10.1016/j.bpj.2021.03.025.","ista":"Arslan FN, Eckert J, Schmidt T, Heisenberg C-PJ. 2021. Holding it together: when cadherin meets cadherin. Biophysical Journal. 120, 4182–4192."}},{"volume":281,"issue":"3","language":[{"iso":"eng"}],"publication_status":"published","publication_identifier":{"eissn":["1096-0783"],"issn":["0022-1236"]},"intvolume":" 281","month":"04","main_file_link":[{"url":"https://arxiv.org/abs/1911.03187","open_access":"1"}],"scopus_import":"1","oa_version":"Preprint","abstract":[{"lang":"eng","text":"We consider the stochastic quantization of a quartic double-well energy functional in the semiclassical regime and derive optimal asymptotics for the exponentially small splitting of the ground state energy. Our result provides an infinite-dimensional version of some sharp tunneling estimates known in finite dimensions for semiclassical Witten Laplacians in degree zero. From a stochastic point of view it proves that the L2 spectral gap of the stochastic one-dimensional Allen-Cahn equation in finite volume satisfies a Kramers-type formula in the limit of vanishing noise. We work with finite-dimensional lattice approximations and establish semiclassical estimates which are uniform in the dimension. Our key estimate shows that the constant separating the two exponentially small eigenvalues from the rest of the spectrum can be taken independently of the dimension."}],"department":[{"_id":"RoSe"}],"date_updated":"2023-08-08T13:15:11Z","status":"public","article_type":"original","type":"journal_article","_id":"9348","date_created":"2021-04-25T22:01:29Z","doi":"10.1016/j.jfa.2021.109029","date_published":"2021-04-07T00:00:00Z","publication":"Journal of Functional Analysis","day":"07","year":"2021","isi":1,"oa":1,"publisher":"Elsevier","quality_controlled":"1","acknowledgement":"GDG gratefully acknowledges the financial support of HIM Bonn in the framework of the 2019 Junior Trimester Programs “Kinetic Theory” and “Randomness, PDEs and Nonlinear Fluctuations” and the hospitality at the University of Rome La Sapienza during his frequent visits.","title":"Sharp tunneling estimates for a double-well model in infinite dimension","article_processing_charge":"No","external_id":{"arxiv":["1911.03187"],"isi":["000644702800005"]},"author":[{"first_name":"Morris","id":"B7ECF9FC-AA38-11E9-AC9A-0930E6697425","full_name":"Brooks, Morris","orcid":"0000-0002-6249-0928","last_name":"Brooks"},{"first_name":"Giacomo","full_name":"Di Gesù, Giacomo","last_name":"Di Gesù"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","citation":{"chicago":"Brooks, Morris, and Giacomo Di Gesù. “Sharp Tunneling Estimates for a Double-Well Model in Infinite Dimension.” Journal of Functional Analysis. Elsevier, 2021. https://doi.org/10.1016/j.jfa.2021.109029.","ista":"Brooks M, Di Gesù G. 2021. Sharp tunneling estimates for a double-well model in infinite dimension. Journal of Functional Analysis. 281(3), 109029.","mla":"Brooks, Morris, and Giacomo Di Gesù. “Sharp Tunneling Estimates for a Double-Well Model in Infinite Dimension.” Journal of Functional Analysis, vol. 281, no. 3, 109029, Elsevier, 2021, doi:10.1016/j.jfa.2021.109029.","ama":"Brooks M, Di Gesù G. Sharp tunneling estimates for a double-well model in infinite dimension. Journal of Functional Analysis. 2021;281(3). doi:10.1016/j.jfa.2021.109029","apa":"Brooks, M., & Di Gesù, G. (2021). Sharp tunneling estimates for a double-well model in infinite dimension. Journal of Functional Analysis. Elsevier. https://doi.org/10.1016/j.jfa.2021.109029","short":"M. Brooks, G. Di Gesù, Journal of Functional Analysis 281 (2021).","ieee":"M. Brooks and G. Di Gesù, “Sharp tunneling estimates for a double-well model in infinite dimension,” Journal of Functional Analysis, vol. 281, no. 3. Elsevier, 2021."},"article_number":"109029"},{"status":"public","type":"journal_article","article_type":"original","_id":"9352","department":[{"_id":"JuFi"}],"date_updated":"2023-08-08T13:13:37Z","intvolume":" 59","month":"03","main_file_link":[{"url":"https://arxiv.org/abs/1912.11646","open_access":"1"}],"scopus_import":"1","oa_version":"Preprint","abstract":[{"lang":"eng","text":"This paper provides an a priori error analysis of a localized orthogonal decomposition method for the numerical stochastic homogenization of a model random diffusion problem. If the uniformly elliptic and bounded random coefficient field of the model problem is stationary and satisfies a quantitative decorrelation assumption in the form of the spectral gap inequality, then the expected $L^2$ error of the method can be estimated, up to logarithmic factors, by $H+(\\varepsilon/H)^{d/2}$, $\\varepsilon$ being the small correlation length of the random coefficient and $H$ the width of the coarse finite element mesh that determines the spatial resolution. The proof bridges recent results of numerical homogenization and quantitative stochastic homogenization."}],"volume":59,"issue":"2","language":[{"iso":"eng"}],"publication_status":"published","publication_identifier":{"issn":["0036-1429"]},"title":"A priori error analysis of a numerical stochastic homogenization method","external_id":{"arxiv":["1912.11646"],"isi":["000646030400003"]},"article_processing_charge":"No","author":[{"first_name":"Julian L","id":"2C12A0B0-F248-11E8-B48F-1D18A9856A87","full_name":"Fischer, Julian L","orcid":"0000-0002-0479-558X","last_name":"Fischer"},{"first_name":"Dietmar","last_name":"Gallistl","full_name":"Gallistl, Dietmar"},{"full_name":"Peterseim, Dietmar","last_name":"Peterseim","first_name":"Dietmar"}],"user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","citation":{"mla":"Fischer, Julian L., et al. “A Priori Error Analysis of a Numerical Stochastic Homogenization Method.” SIAM Journal on Numerical Analysis, vol. 59, no. 2, Society for Industrial and Applied Mathematics, 2021, pp. 660–74, doi:10.1137/19M1308992.","short":"J.L. Fischer, D. Gallistl, D. Peterseim, SIAM Journal on Numerical Analysis 59 (2021) 660–674.","ieee":"J. L. Fischer, D. Gallistl, and D. Peterseim, “A priori error analysis of a numerical stochastic homogenization method,” SIAM Journal on Numerical Analysis, vol. 59, no. 2. Society for Industrial and Applied Mathematics, pp. 660–674, 2021.","ama":"Fischer JL, Gallistl D, Peterseim D. A priori error analysis of a numerical stochastic homogenization method. SIAM Journal on Numerical Analysis. 2021;59(2):660-674. doi:10.1137/19M1308992","apa":"Fischer, J. L., Gallistl, D., & Peterseim, D. (2021). A priori error analysis of a numerical stochastic homogenization method. SIAM Journal on Numerical Analysis. Society for Industrial and Applied Mathematics. https://doi.org/10.1137/19M1308992","chicago":"Fischer, Julian L, Dietmar Gallistl, and Dietmar Peterseim. “A Priori Error Analysis of a Numerical Stochastic Homogenization Method.” SIAM Journal on Numerical Analysis. Society for Industrial and Applied Mathematics, 2021. https://doi.org/10.1137/19M1308992.","ista":"Fischer JL, Gallistl D, Peterseim D. 2021. A priori error analysis of a numerical stochastic homogenization method. SIAM Journal on Numerical Analysis. 59(2), 660–674."},"oa":1,"quality_controlled":"1","publisher":"Society for Industrial and Applied Mathematics","acknowledgement":"This work was initiated while the authors enjoyed the kind hospitality of the Hausdorff Institute for Mathematics in Bonn during the trimester program Multiscale Problems: Algorithms, Numerical Analysis, and Computation. D. Peterseim would like to acknowledge the kind hospitality of the Erwin Schrödinger International Institute for Mathematics and Physics (ESI), where parts of this research were developed under the frame of the thematic program Numerical Analysis of Complex PDE Models in the Sciences.","date_created":"2021-04-25T22:01:31Z","doi":"10.1137/19M1308992","date_published":"2021-03-09T00:00:00Z","page":"660-674","publication":"SIAM Journal on Numerical Analysis","day":"09","year":"2021","isi":1}]