[{"month":"07","day":"09","article_processing_charge":"No","date_published":"2015-07-09T00:00:00Z","doi":"10.5061/dryad.7kc79","oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.5061/dryad.7kc79"}],"citation":{"ama":"Westhus C, Ugelvig LV, Tourdot E, Heinze J, Doums C, Cremer S. Data from: Increased grooming after repeated brood care provides sanitary benefits in a clonal ant. 2015. doi:10.5061/dryad.7kc79","ista":"Westhus C, Ugelvig LV, Tourdot E, Heinze J, Doums C, Cremer S. 2015. Data from: Increased grooming after repeated brood care provides sanitary benefits in a clonal ant, Dryad, 10.5061/dryad.7kc79.","ieee":"C. Westhus, L. V. Ugelvig, E. Tourdot, J. Heinze, C. Doums, and S. Cremer, “Data from: Increased grooming after repeated brood care provides sanitary benefits in a clonal ant.” Dryad, 2015.","apa":"Westhus, C., Ugelvig, L. V., Tourdot, E., Heinze, J., Doums, C., & Cremer, S. (2015). Data from: Increased grooming after repeated brood care provides sanitary benefits in a clonal ant. Dryad. https://doi.org/10.5061/dryad.7kc79","mla":"Westhus, Claudia, et al. Data from: Increased Grooming after Repeated Brood Care Provides Sanitary Benefits in a Clonal Ant. Dryad, 2015, doi:10.5061/dryad.7kc79.","short":"C. Westhus, L.V. Ugelvig, E. Tourdot, J. Heinze, C. Doums, S. Cremer, (2015).","chicago":"Westhus, Claudia, Line V Ugelvig, Edouard Tourdot, Jürgen Heinze, Claudie Doums, and Sylvia Cremer. “Data from: Increased Grooming after Repeated Brood Care Provides Sanitary Benefits in a Clonal Ant.” Dryad, 2015. https://doi.org/10.5061/dryad.7kc79."},"abstract":[{"lang":"eng","text":"Repeated pathogen exposure is a common threat in colonies of social insects, posing selection pressures on colony members to respond with improved disease-defense performance. We here tested whether experience gained by repeated tending of low-level fungus-exposed (Metarhizium robertsii) larvae may alter the performance of sanitary brood care in the clonal ant, Platythyrea punctata. We trained ants individually over nine consecutive trials to either sham-treated or fungus-exposed larvae. We then compared the larval grooming behavior of naive and trained ants and measured how effectively they removed infectious fungal conidiospores from the fungus-exposed larvae. We found that the ants changed the duration of larval grooming in response to both, larval treatment and their level of experience: (1) sham-treated larvae received longer grooming than the fungus-exposed larvae and (2) trained ants performed less self-grooming but longer larval grooming than naive ants, which was true for both, ants trained to fungus-exposed and also to sham-treated larvae. Ants that groomed the fungus-exposed larvae for longer periods removed a higher number of fungal conidiospores from the surface of the fungus-exposed larvae. As experienced ants performed longer larval grooming, they were more effective in fungal removal, thus making them better caretakers under pathogen attack of the colony. By studying this clonal ant, we can thus conclude that even in the absence of genetic variation between colony members, differences in experience levels of brood care may affect performance of sanitary brood care in social insects."}],"type":"research_data_reference","date_updated":"2023-02-23T10:30:52Z","date_created":"2021-07-28T08:52:53Z","oa_version":"Published Version","author":[{"full_name":"Westhus, Claudia","last_name":"Westhus","first_name":"Claudia"},{"last_name":"Ugelvig","first_name":"Line V","orcid":"0000-0003-1832-8883","id":"3DC97C8E-F248-11E8-B48F-1D18A9856A87","full_name":"Ugelvig, Line V"},{"full_name":"Tourdot, Edouard","last_name":"Tourdot","first_name":"Edouard"},{"last_name":"Heinze","first_name":"Jürgen","full_name":"Heinze, Jürgen"},{"full_name":"Doums, Claudie","last_name":"Doums","first_name":"Claudie"},{"full_name":"Cremer, Sylvia","last_name":"Cremer","first_name":"Sylvia","orcid":"0000-0002-2193-3868","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87"}],"related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"2161"}]},"status":"public","title":"Data from: Increased grooming after repeated brood care provides sanitary benefits in a clonal ant","department":[{"_id":"SyCr"}],"publisher":"Dryad","year":"2015","_id":"9742","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf"},{"article_processing_charge":"No","month":"11","day":"18","doi":"10.1371/journal.pbio.1002299.s008","date_published":"2015-11-18T00:00:00Z","citation":{"chicago":"Chevereau, Guillaume, Marta Lukacisinova, Tugce Batur, Aysegul Guvenek, Dilay Hazal Ayhan, Erdal Toprak, and Mark Tobias Bollenbach. “Gene Ontology Enrichment Analysis for the Most Sensitive Gene Deletion Strains for All Drugs.” Public Library of Science, 2015. https://doi.org/10.1371/journal.pbio.1002299.s008.","short":"G. Chevereau, M. Lukacisinova, T. Batur, A. Guvenek, D.H. Ayhan, E. Toprak, M.T. Bollenbach, (2015).","mla":"Chevereau, Guillaume, et al. Gene Ontology Enrichment Analysis for the Most Sensitive Gene Deletion Strains for All Drugs. Public Library of Science, 2015, doi:10.1371/journal.pbio.1002299.s008.","apa":"Chevereau, G., Lukacisinova, M., Batur, T., Guvenek, A., Ayhan, D. H., Toprak, E., & Bollenbach, M. T. (2015). Gene ontology enrichment analysis for the most sensitive gene deletion strains for all drugs. Public Library of Science. https://doi.org/10.1371/journal.pbio.1002299.s008","ieee":"G. Chevereau et al., “Gene ontology enrichment analysis for the most sensitive gene deletion strains for all drugs.” Public Library of Science, 2015.","ista":"Chevereau G, Lukacisinova M, Batur T, Guvenek A, Ayhan DH, Toprak E, Bollenbach MT. 2015. Gene ontology enrichment analysis for the most sensitive gene deletion strains for all drugs, Public Library of Science, 10.1371/journal.pbio.1002299.s008.","ama":"Chevereau G, Lukacisinova M, Batur T, et al. Gene ontology enrichment analysis for the most sensitive gene deletion strains for all drugs. 2015. doi:10.1371/journal.pbio.1002299.s008"},"type":"research_data_reference","oa_version":"Published Version","date_created":"2021-08-03T07:05:16Z","date_updated":"2023-02-23T10:07:02Z","related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"1619"}]},"author":[{"id":"424D78A0-F248-11E8-B48F-1D18A9856A87","first_name":"Guillaume","last_name":"Chevereau","full_name":"Chevereau, Guillaume"},{"first_name":"Marta","last_name":"Lukacisinova","id":"4342E402-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2519-8004","full_name":"Lukacisinova, Marta"},{"full_name":"Batur, Tugce","first_name":"Tugce","last_name":"Batur"},{"last_name":"Guvenek","first_name":"Aysegul","full_name":"Guvenek, Aysegul"},{"full_name":"Ayhan, Dilay Hazal","first_name":"Dilay Hazal","last_name":"Ayhan"},{"full_name":"Toprak, Erdal","last_name":"Toprak","first_name":"Erdal"},{"orcid":"0000-0003-4398-476X","id":"3E6DB97A-F248-11E8-B48F-1D18A9856A87","last_name":"Bollenbach","first_name":"Mark Tobias","full_name":"Bollenbach, Mark Tobias"}],"publisher":"Public Library of Science","department":[{"_id":"ToBo"}],"status":"public","title":"Gene ontology enrichment analysis for the most sensitive gene deletion strains for all drugs","_id":"9765","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","year":"2015"},{"extern":"1","year":"2015","publisher":"Elsevier","publication_status":"published","author":[{"first_name":"S.","last_name":"Ragettli","full_name":"Ragettli, S."},{"last_name":"Pellicciotti","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca"},{"full_name":"Immerzeel, W.W.","first_name":"W.W.","last_name":"Immerzeel"},{"last_name":"Miles","first_name":"E.S.","full_name":"Miles, E.S."},{"full_name":"Petersen, L.","first_name":"L.","last_name":"Petersen"},{"first_name":"M.","last_name":"Heynen","full_name":"Heynen, M."},{"full_name":"Shea, J.M.","first_name":"J.M.","last_name":"Shea"},{"full_name":"Stumm, D.","first_name":"D.","last_name":"Stumm"},{"full_name":"Joshi, S.","last_name":"Joshi","first_name":"S."},{"full_name":"Shrestha, A.","first_name":"A.","last_name":"Shrestha"}],"volume":78,"date_created":"2023-02-20T08:16:21Z","date_updated":"2023-02-24T09:28:04Z","publication_identifier":{"issn":["0309-1708"]},"month":"04","quality_controlled":"1","doi":"10.1016/j.advwatres.2015.01.013","language":[{"iso":"eng"}],"type":"journal_article","issue":"4","abstract":[{"text":"The hydrology of high-elevation watersheds of the Hindu Kush-Himalaya region (HKH) is poorly known. The correct representation of internal states and process dynamics in glacio-hydrological models can often not be verified due to missing in situ measurements. We use a new set of detailed ground data from the upper Langtang valley in Nepal to systematically guide a state-of-the art glacio-hydrological model through a parameter assigning process with the aim to understand the hydrology of the catchment and contribution of snow and ice processes to runoff. 14 parameters are directly calculated on the basis of local data, and 13 parameters are calibrated against 5 different datasets of in situ or remote sensing data. Spatial fields of debris thickness are reconstructed through a novel approach that employs data from an Unmanned Aerial Vehicle (UAV), energy balance modeling and statistical techniques. The model is validated against measured catchment runoff (Nash–Sutcliffe efficiency 0.87) and modeled snow cover is compared to Landsat snow cover. The advanced representation of processes allowed assessing the role played by avalanching for runoff for the first time for a Himalayan catchment (5% of annual water inputs to the hydrological system are due to snow redistribution) and to quantify the hydrological significance of sub-debris ice melt (9% of annual water inputs). Snowmelt is the most important contributor to total runoff during the hydrological year 2012/2013 (representing 40% of all sources), followed by rainfall (34%) and ice melt (26%). A sensitivity analysis is used to assess the efficiency of the monitoring network and identify the timing and location of field measurements that constrain model uncertainty. The methodology to set up a glacio-hydrological model in high-elevation regions presented in this study can be regarded as a benchmark for modelers in the HKH seeking to evaluate their calibration approach, their experimental setup and thus to reduce the predictive model uncertainty.\r\n\r\n","lang":"eng"}],"_id":"12630","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 78","title":"Unraveling the hydrology of a Himalayan catchment through integration of high resolution in situ data and remote sensing with an advanced simulation model","status":"public","oa_version":"None","scopus_import":"1","keyword":["Water Science and Technology"],"article_processing_charge":"No","day":"01","citation":{"ama":"Ragettli S, Pellicciotti F, Immerzeel WW, et al. Unraveling the hydrology of a Himalayan catchment through integration of high resolution in situ data and remote sensing with an advanced simulation model. Advances in Water Resources. 2015;78(4):94-111. doi:10.1016/j.advwatres.2015.01.013","ista":"Ragettli S, Pellicciotti F, Immerzeel WW, Miles ES, Petersen L, Heynen M, Shea JM, Stumm D, Joshi S, Shrestha A. 2015. Unraveling the hydrology of a Himalayan catchment through integration of high resolution in situ data and remote sensing with an advanced simulation model. Advances in Water Resources. 78(4), 94–111.","ieee":"S. Ragettli et al., “Unraveling the hydrology of a Himalayan catchment through integration of high resolution in situ data and remote sensing with an advanced simulation model,” Advances in Water Resources, vol. 78, no. 4. Elsevier, pp. 94–111, 2015.","apa":"Ragettli, S., Pellicciotti, F., Immerzeel, W. W., Miles, E. S., Petersen, L., Heynen, M., … Shrestha, A. (2015). Unraveling the hydrology of a Himalayan catchment through integration of high resolution in situ data and remote sensing with an advanced simulation model. Advances in Water Resources. Elsevier. https://doi.org/10.1016/j.advwatres.2015.01.013","mla":"Ragettli, S., et al. “Unraveling the Hydrology of a Himalayan Catchment through Integration of High Resolution in Situ Data and Remote Sensing with an Advanced Simulation Model.” Advances in Water Resources, vol. 78, no. 4, Elsevier, 2015, pp. 94–111, doi:10.1016/j.advwatres.2015.01.013.","short":"S. Ragettli, F. Pellicciotti, W.W. Immerzeel, E.S. Miles, L. Petersen, M. Heynen, J.M. Shea, D. Stumm, S. Joshi, A. Shrestha, Advances in Water Resources 78 (2015) 94–111.","chicago":"Ragettli, S., Francesca Pellicciotti, W.W. Immerzeel, E.S. Miles, L. Petersen, M. Heynen, J.M. Shea, D. Stumm, S. Joshi, and A. Shrestha. “Unraveling the Hydrology of a Himalayan Catchment through Integration of High Resolution in Situ Data and Remote Sensing with an Advanced Simulation Model.” Advances in Water Resources. Elsevier, 2015. https://doi.org/10.1016/j.advwatres.2015.01.013."},"publication":"Advances in Water Resources","page":"94-111","article_type":"original","date_published":"2015-04-01T00:00:00Z"},{"keyword":["Earth-Surface Processes"],"scopus_import":"1","day":"01","article_processing_charge":"No","article_type":"original","page":"373-386","publication":"Journal of Glaciology","citation":{"ama":"Pellicciotti F, Stephan C, Miles E, Herreid S, Immerzeel WW, Bolch T. Mass-balance changes of the debris-covered glaciers in the Langtang Himal, Nepal, from 1974 to 1999. Journal of Glaciology. 2015;61(226):373-386. doi:10.3189/2015jog13j237","ista":"Pellicciotti F, Stephan C, Miles E, Herreid S, Immerzeel WW, Bolch T. 2015. Mass-balance changes of the debris-covered glaciers in the Langtang Himal, Nepal, from 1974 to 1999. Journal of Glaciology. 61(226), 373–386.","ieee":"F. Pellicciotti, C. Stephan, E. Miles, S. Herreid, W. W. Immerzeel, and T. Bolch, “Mass-balance changes of the debris-covered glaciers in the Langtang Himal, Nepal, from 1974 to 1999,” Journal of Glaciology, vol. 61, no. 226. International Glaciological Society, pp. 373–386, 2015.","apa":"Pellicciotti, F., Stephan, C., Miles, E., Herreid, S., Immerzeel, W. W., & Bolch, T. (2015). Mass-balance changes of the debris-covered glaciers in the Langtang Himal, Nepal, from 1974 to 1999. Journal of Glaciology. International Glaciological Society. https://doi.org/10.3189/2015jog13j237","mla":"Pellicciotti, Francesca, et al. “Mass-Balance Changes of the Debris-Covered Glaciers in the Langtang Himal, Nepal, from 1974 to 1999.” Journal of Glaciology, vol. 61, no. 226, International Glaciological Society, 2015, pp. 373–86, doi:10.3189/2015jog13j237.","short":"F. Pellicciotti, C. Stephan, E. Miles, S. Herreid, W.W. Immerzeel, T. Bolch, Journal of Glaciology 61 (2015) 373–386.","chicago":"Pellicciotti, Francesca, Christa Stephan, Evan Miles, Sam Herreid, Walter W. Immerzeel, and Tobias Bolch. “Mass-Balance Changes of the Debris-Covered Glaciers in the Langtang Himal, Nepal, from 1974 to 1999.” Journal of Glaciology. International Glaciological Society, 2015. https://doi.org/10.3189/2015jog13j237."},"date_published":"2015-03-01T00:00:00Z","type":"journal_article","abstract":[{"text":"Thick debris cover on glaciers can significantly reduce ice melt. However, several studies have suggested that debris-covered glaciers in the Himalaya might have lost mass at a rate similar to debris-free glaciers. We reconstruct elevation and mass changes for the debris-covered glaciers of the upper Langtang valley, Nepalese Himalaya, using a digital elevation model (DEM) from 1974 stereo Hexagon satellite data and the 2000 SRTM (Shuttle Radar Topography Mission) DEM. Uncertainties are high in the accumulation areas, due to data gaps in the SRTM and difficulties with delineation of the glacier borders. Even with these uncertainties, we obtain thinning rates comparable to those of several other studies in the Himalaya. In particular, we obtain a total mass balance for the investigated debris-covered glaciers of the basin of –0.32 ± 0.18 m w.e. a−1. However, there are major spatial differences both between glaciers and within any single glacier, exhibiting a very distinct nonlinear mass-balance profile with elevation. Through analysis of surface velocities derived from Landsat ETM+ imagery, we show that thinning occurs in areas of low velocity and low slope. These areas are prone to a general, dynamic decay of surface features and to the development of supraglacial lakes and ice cliffs, which may be responsible for a considerable increase in overall glacier ablation.","lang":"eng"}],"issue":"226","title":"Mass-balance changes of the debris-covered glaciers in the Langtang Himal, Nepal, from 1974 to 1999","status":"public","intvolume":" 61","_id":"12628","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","oa_version":"Published Version","month":"03","publication_identifier":{"issn":["0022-1430"],"eissn":["1727-5652"]},"quality_controlled":"1","main_file_link":[{"url":"https://doi.org/10.3189/2015JoG13J237","open_access":"1"}],"oa":1,"language":[{"iso":"eng"}],"doi":"10.3189/2015jog13j237","extern":"1","publication_status":"published","publisher":"International Glaciological Society","year":"2015","date_created":"2023-02-20T08:16:11Z","date_updated":"2023-02-24T09:35:21Z","volume":61,"author":[{"first_name":"Francesca","last_name":"Pellicciotti","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca"},{"full_name":"Stephan, Christa","first_name":"Christa","last_name":"Stephan"},{"first_name":"Evan","last_name":"Miles","full_name":"Miles, Evan"},{"last_name":"Herreid","first_name":"Sam","full_name":"Herreid, Sam"},{"last_name":"Immerzeel","first_name":"Walter W.","full_name":"Immerzeel, Walter W."},{"first_name":"Tobias","last_name":"Bolch","full_name":"Bolch, Tobias"}]},{"date_published":"2015-04-18T00:00:00Z","publication":"Journal of Geophysical Research: Atmospheres","citation":{"short":"A. Ayala, F. Pellicciotti, J.M. Shea, Journal of Geophysical Research: Atmospheres 120 (2015) 3139–3157.","mla":"Ayala, A., et al. “Modeling 2 m Air Temperatures over Mountain Glaciers: Exploring the Influence of Katabatic Cooling and External Warming.” Journal of Geophysical Research: Atmospheres, vol. 120, no. 8, American Geophysical Union, 2015, pp. 3139–57, doi:10.1002/2015jd023137.","chicago":"Ayala, A., Francesca Pellicciotti, and J. M. Shea. “Modeling 2 m Air Temperatures over Mountain Glaciers: Exploring the Influence of Katabatic Cooling and External Warming.” Journal of Geophysical Research: Atmospheres. American Geophysical Union, 2015. https://doi.org/10.1002/2015jd023137.","ama":"Ayala A, Pellicciotti F, Shea JM. Modeling 2 m air temperatures over mountain glaciers: Exploring the influence of katabatic cooling and external warming. Journal of Geophysical Research: Atmospheres. 2015;120(8):3139-3157. doi:10.1002/2015jd023137","ieee":"A. Ayala, F. Pellicciotti, and J. M. Shea, “Modeling 2 m air temperatures over mountain glaciers: Exploring the influence of katabatic cooling and external warming,” Journal of Geophysical Research: Atmospheres, vol. 120, no. 8. American Geophysical Union, pp. 3139–3157, 2015.","apa":"Ayala, A., Pellicciotti, F., & Shea, J. M. (2015). Modeling 2 m air temperatures over mountain glaciers: Exploring the influence of katabatic cooling and external warming. Journal of Geophysical Research: Atmospheres. American Geophysical Union. https://doi.org/10.1002/2015jd023137","ista":"Ayala A, Pellicciotti F, Shea JM. 2015. Modeling 2 m air temperatures over mountain glaciers: Exploring the influence of katabatic cooling and external warming. Journal of Geophysical Research: Atmospheres. 120(8), 3139–3157."},"article_type":"original","page":"3139-3157","day":"18","article_processing_charge":"No","scopus_import":"1","keyword":["Space and Planetary Science","Earth and Planetary Sciences (miscellaneous)","Atmospheric Science","Geophysics"],"oa_version":"Published Version","_id":"12631","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","title":"Modeling 2 m air temperatures over mountain glaciers: Exploring the influence of katabatic cooling and external warming","status":"public","intvolume":" 120","abstract":[{"text":"Air temperature is one of the most relevant input variables for snow and ice melt calculations. However, local meteorological conditions, complex topography, and logistical concerns in glacierized regions make the measuring and modeling of air temperature a difficult task. In this study, we investigate the spatial distribution of 2 m air temperature over mountain glaciers and propose a modification to an existing model to improve its representation. Spatially distributed meteorological data from Haut Glacier d'Arolla (Switzerland), Place (Canada), and Juncal Norte (Chile) Glaciers are used to examine approximate flow line temperatures during their respective ablation seasons. During warm conditions (off-glacier temperatures well above 0°C), observed air temperatures in the upper reaches of Place Glacier and Haut Glacier d'Arolla decrease down glacier along the approximate flow line. At Juncal Norte and Haut Glacier d'Arolla, an increase in air temperature is observed over the glacier tongue. While the temperature behavior over the upper part can be explained by the cooling effect of the glacier surface, the temperature increase over the glacier tongue may be caused by several processes induced by the surrounding warm atmosphere. In order to capture the latter effect, we add an additional term to the Greuell and Böhm (GB) thermodynamic glacier wind model. For high off-glacier temperatures, the modified GB model reduces root-mean-square error up to 32% and provides a new approach for distributing air temperature over mountain glaciers as a function of off-glacier temperatures and approximate glacier flow lines.","lang":"eng"}],"issue":"8","type":"journal_article","doi":"10.1002/2015jd023137","language":[{"iso":"eng"}],"quality_controlled":"1","month":"04","publication_identifier":{"issn":["2169-897X"],"eissn":["2169-8996"]},"author":[{"full_name":"Ayala, A.","first_name":"A.","last_name":"Ayala"},{"first_name":"Francesca","last_name":"Pellicciotti","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca"},{"last_name":"Shea","first_name":"J. M.","full_name":"Shea, J. M."}],"date_updated":"2023-02-24T09:16:26Z","date_created":"2023-02-20T08:16:28Z","volume":120,"year":"2015","publication_status":"published","publisher":"American Geophysical Union","extern":"1"},{"year":"2015","publisher":"Taylor & Francis","publication_status":"published","author":[{"full_name":"Shea, J.M.","first_name":"J.M.","last_name":"Shea"},{"first_name":"P.","last_name":"Wagnon","full_name":"Wagnon, P."},{"full_name":"Immerzeel, W.W.","first_name":"W.W.","last_name":"Immerzeel"},{"last_name":"Biron","first_name":"R.","full_name":"Biron, R."},{"full_name":"Brun, F.","last_name":"Brun","first_name":"F."},{"full_name":"Pellicciotti, Francesca","first_name":"Francesca","last_name":"Pellicciotti","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"}],"volume":31,"date_updated":"2023-02-24T09:30:42Z","date_created":"2023-02-20T08:16:17Z","extern":"1","oa":1,"main_file_link":[{"url":"https://doi.org/10.1080/07900627.2015.1020417","open_access":"1"}],"quality_controlled":"1","doi":"10.1080/07900627.2015.1020417","language":[{"iso":"eng"}],"publication_identifier":{"issn":["0790-0627"],"eissn":["1360-0648"]},"month":"04","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12629","intvolume":" 31","status":"public","title":"A comparative high-altitude meteorological analysis from three catchments in the Nepalese Himalaya","oa_version":"Published Version","type":"journal_article","issue":"2","abstract":[{"text":"Meteorological studies in high-mountain environments form the basis of our understanding of catchment hydrology and glacier accumulation and melt processes, yet high-altitude (>4000 m above sea level, asl) observatories are rare. This research presents meteorological data recorded between December 2012 and November 2013 at seven stations in Nepal, ranging in elevation from 3860 to 5360 m asl. Seasonal and diurnal cycles in air temperature, vapour pressure, incoming short-wave and long-wave radiation, atmospheric transmissivity, wind speed, and precipitation are compared between sites. Solar radiation strongly affects diurnal temperature and vapour pressure cycles, but local topography and valley-scale circulations alter wind speed and precipitation cycles. The observed diurnal variability in vertical temperature gradients in all seasons highlights the importance of in situ measurements for melt modelling. The monsoon signal (progressive onset and sharp end) is visible in all data-sets, and the passage of the remnants of Typhoon Phailin in mid-October 2013 provides an interesting case study on the possible effects of such storms on glaciers in the region.","lang":"eng"}],"citation":{"chicago":"Shea, J.M., P. Wagnon, W.W. Immerzeel, R. Biron, F. Brun, and Francesca Pellicciotti. “A Comparative High-Altitude Meteorological Analysis from Three Catchments in the Nepalese Himalaya.” International Journal of Water Resources Development. Taylor & Francis, 2015. https://doi.org/10.1080/07900627.2015.1020417.","mla":"Shea, J. M., et al. “A Comparative High-Altitude Meteorological Analysis from Three Catchments in the Nepalese Himalaya.” International Journal of Water Resources Development, vol. 31, no. 2, Taylor & Francis, 2015, pp. 174–200, doi:10.1080/07900627.2015.1020417.","short":"J.M. Shea, P. Wagnon, W.W. Immerzeel, R. Biron, F. Brun, F. Pellicciotti, International Journal of Water Resources Development 31 (2015) 174–200.","ista":"Shea JM, Wagnon P, Immerzeel WW, Biron R, Brun F, Pellicciotti F. 2015. A comparative high-altitude meteorological analysis from three catchments in the Nepalese Himalaya. International Journal of Water Resources Development. 31(2), 174–200.","ieee":"J. M. Shea, P. Wagnon, W. W. Immerzeel, R. Biron, F. Brun, and F. Pellicciotti, “A comparative high-altitude meteorological analysis from three catchments in the Nepalese Himalaya,” International Journal of Water Resources Development, vol. 31, no. 2. Taylor & Francis, pp. 174–200, 2015.","apa":"Shea, J. M., Wagnon, P., Immerzeel, W. W., Biron, R., Brun, F., & Pellicciotti, F. (2015). A comparative high-altitude meteorological analysis from three catchments in the Nepalese Himalaya. International Journal of Water Resources Development. Taylor & Francis. https://doi.org/10.1080/07900627.2015.1020417","ama":"Shea JM, Wagnon P, Immerzeel WW, Biron R, Brun F, Pellicciotti F. A comparative high-altitude meteorological analysis from three catchments in the Nepalese Himalaya. International Journal of Water Resources Development. 2015;31(2):174-200. doi:10.1080/07900627.2015.1020417"},"publication":"International Journal of Water Resources Development","page":"174-200","article_type":"original","date_published":"2015-04-18T00:00:00Z","scopus_import":"1","keyword":["Water Science and Technology","Development"],"article_processing_charge":"No","day":"18"},{"scopus_import":"1","article_processing_charge":"No","day":"01","citation":{"ama":"Steiner JF, Pellicciotti F, Buri P, Miles ES, Immerzeel WW, Reid TD. Modelling ice-cliff backwasting on a debris-covered glacier in the Nepalese Himalaya. Journal of Glaciology. 2015;61(229):889-907. doi:10.3189/2015jog14j194","ista":"Steiner JF, Pellicciotti F, Buri P, Miles ES, Immerzeel WW, Reid TD. 2015. Modelling ice-cliff backwasting on a debris-covered glacier in the Nepalese Himalaya. Journal of Glaciology. 61(229), 889–907.","ieee":"J. F. Steiner, F. Pellicciotti, P. Buri, E. S. Miles, W. W. Immerzeel, and T. D. Reid, “Modelling ice-cliff backwasting on a debris-covered glacier in the Nepalese Himalaya,” Journal of Glaciology, vol. 61, no. 229. International Glaciological Society, pp. 889–907, 2015.","apa":"Steiner, J. F., Pellicciotti, F., Buri, P., Miles, E. S., Immerzeel, W. W., & Reid, T. D. (2015). Modelling ice-cliff backwasting on a debris-covered glacier in the Nepalese Himalaya. Journal of Glaciology. International Glaciological Society. https://doi.org/10.3189/2015jog14j194","mla":"Steiner, Jakob F., et al. “Modelling Ice-Cliff Backwasting on a Debris-Covered Glacier in the Nepalese Himalaya.” Journal of Glaciology, vol. 61, no. 229, International Glaciological Society, 2015, pp. 889–907, doi:10.3189/2015jog14j194.","short":"J.F. Steiner, F. Pellicciotti, P. Buri, E.S. Miles, W.W. Immerzeel, T.D. Reid, Journal of Glaciology 61 (2015) 889–907.","chicago":"Steiner, Jakob F., Francesca Pellicciotti, Pascal Buri, Evan S. Miles, Walter W. Immerzeel, and Tim D. Reid. “Modelling Ice-Cliff Backwasting on a Debris-Covered Glacier in the Nepalese Himalaya.” Journal of Glaciology. International Glaciological Society, 2015. https://doi.org/10.3189/2015jog14j194."},"publication":"Journal of Glaciology","page":"889-907","article_type":"original","date_published":"2015-07-01T00:00:00Z","type":"journal_article","issue":"229","abstract":[{"text":"Ice cliffs have been identified as a reason for higher ablation rates on debris-covered glaciers than are implied by the insulation effects of the debris. This study aims to improve our understanding of cliff backwasting, and the role of radiative fluxes in particular. An energy-balance model is forced with new data gathered in May and October 2013 on Lirung Glacier, Nepalese Himalaya. Observations show substantial variability in melt between cliffs, between locations on any cliff and between seasons. Using a high-resolution digital elevation model we calculate longwave fluxes incident to the cliff from surrounding terrain and include the effect of local shading on shortwave radiation. This is an advance over previous studies, that made simplified assumptions on cliff geometry and radiative fluxes. Measured melt rates varied between 3.25 and 8.6 cm d−1 in May and 0.18 and 1.34 cm d−1 in October. Model results reproduce the strong variability in space and time, suggesting considerable differences in radiative fluxes over one cliff. In October the model fails to reproduce stake readings, probably due to the lack of a refreezing component. Disregarding local topography can lead to overestimation of melt at the point scale by up to ∼9%.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"12626","intvolume":" 61","status":"public","title":"Modelling ice-cliff backwasting on a debris-covered glacier in the Nepalese Himalaya","oa_version":"Published Version","publication_identifier":{"eissn":["1727-5652"],"issn":["0022-1430"]},"month":"07","main_file_link":[{"open_access":"1","url":"https://doi.org/10.3189/2015JoG14J194"}],"oa":1,"quality_controlled":"1","doi":"10.3189/2015jog14j194","language":[{"iso":"eng"}],"extern":"1","year":"2015","publisher":"International Glaciological Society","publication_status":"published","author":[{"full_name":"Steiner, Jakob F.","first_name":"Jakob F.","last_name":"Steiner"},{"first_name":"Francesca","last_name":"Pellicciotti","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca"},{"full_name":"Buri, Pascal","last_name":"Buri","first_name":"Pascal"},{"first_name":"Evan S.","last_name":"Miles","full_name":"Miles, Evan S."},{"full_name":"Immerzeel, Walter W.","last_name":"Immerzeel","first_name":"Walter W."},{"first_name":"Tim D.","last_name":"Reid","full_name":"Reid, Tim D."}],"volume":61,"date_created":"2023-02-20T08:16:01Z","date_updated":"2023-02-24T09:43:14Z"},{"article_processing_charge":"No","day":"01","scopus_import":"1","date_published":"2015-05-01T00:00:00Z","page":"524-536","article_type":"original","citation":{"ama":"Herreid S, Pellicciotti F, Ayala A, et al. Satellite observations show no net change in the percentage of supraglacial debris-covered area in northern Pakistan from 1977 to 2014. Journal of Glaciology. 2015;61(227):524-536. doi:10.3189/2015jog14j227","apa":"Herreid, S., Pellicciotti, F., Ayala, A., Chesnokova, A., Kienholz, C., Shea, J., & Shrestha, A. (2015). Satellite observations show no net change in the percentage of supraglacial debris-covered area in northern Pakistan from 1977 to 2014. Journal of Glaciology. International Glaciological Society. https://doi.org/10.3189/2015jog14j227","ieee":"S. Herreid et al., “Satellite observations show no net change in the percentage of supraglacial debris-covered area in northern Pakistan from 1977 to 2014,” Journal of Glaciology, vol. 61, no. 227. International Glaciological Society, pp. 524–536, 2015.","ista":"Herreid S, Pellicciotti F, Ayala A, Chesnokova A, Kienholz C, Shea J, Shrestha A. 2015. Satellite observations show no net change in the percentage of supraglacial debris-covered area in northern Pakistan from 1977 to 2014. Journal of Glaciology. 61(227), 524–536.","short":"S. Herreid, F. Pellicciotti, A. Ayala, A. Chesnokova, C. Kienholz, J. Shea, A. Shrestha, Journal of Glaciology 61 (2015) 524–536.","mla":"Herreid, Sam, et al. “Satellite Observations Show No Net Change in the Percentage of Supraglacial Debris-Covered Area in Northern Pakistan from 1977 to 2014.” Journal of Glaciology, vol. 61, no. 227, International Glaciological Society, 2015, pp. 524–36, doi:10.3189/2015jog14j227.","chicago":"Herreid, Sam, Francesca Pellicciotti, Alvaro Ayala, Anna Chesnokova, Christian Kienholz, Joseph Shea, and Arun Shrestha. “Satellite Observations Show No Net Change in the Percentage of Supraglacial Debris-Covered Area in Northern Pakistan from 1977 to 2014.” Journal of Glaciology. International Glaciological Society, 2015. https://doi.org/10.3189/2015jog14j227."},"publication":"Journal of Glaciology","issue":"227","abstract":[{"text":"Spatial evolution of supraglacial debris cover on mountain glaciers is a largely unmonitored and poorly understood phenomenon that directly affects glacier melt. Supraglacial debris cover for 93 glaciers in the Karakoram, northern Pakistan, was mapped from Landsat imagery acquired in 1977, 1998, 2009 and 2014. Surge-type glaciers occupy 41% of the study area and were considered separately. The time series of debris-covered surface area change shows a mean value of zero or near-zero change for both surging and non-surging glaciers. An increase in debris-covered area is often associated with negative regional mass balances. We extend this logic to suggest that the stable regional mass balances in the Karakoram explain the zero or near-zero change in debris-covered area. This coupling of trends combined with our 37 year time series of data suggests the Karakoram anomaly extends further back in time than previously known.","lang":"eng"}],"type":"journal_article","oa_version":"Published Version","intvolume":" 61","title":"Satellite observations show no net change in the percentage of supraglacial debris-covered area in northern Pakistan from 1977 to 2014","status":"public","_id":"12627","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publication_identifier":{"issn":["0022-1430"],"eissn":["1727-5652"]},"month":"05","language":[{"iso":"eng"}],"doi":"10.3189/2015jog14j227","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.3189/2015JoG14J227"}],"oa":1,"extern":"1","volume":61,"date_created":"2023-02-20T08:16:06Z","date_updated":"2023-02-24T09:40:30Z","author":[{"full_name":"Herreid, Sam","first_name":"Sam","last_name":"Herreid"},{"first_name":"Francesca","last_name":"Pellicciotti","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca"},{"full_name":"Ayala, Alvaro","first_name":"Alvaro","last_name":"Ayala"},{"first_name":"Anna","last_name":"Chesnokova","full_name":"Chesnokova, Anna"},{"full_name":"Kienholz, Christian","first_name":"Christian","last_name":"Kienholz"},{"first_name":"Joseph","last_name":"Shea","full_name":"Shea, Joseph"},{"full_name":"Shrestha, Arun","last_name":"Shrestha","first_name":"Arun"}],"publisher":"International Glaciological Society","publication_status":"published","year":"2015"},{"publisher":"American Chemical Society","department":[{"_id":"MiSi"}],"publication_status":"published","pmid":1,"year":"2015","volume":54,"date_updated":"2023-03-30T11:32:57Z","date_created":"2018-12-11T11:53:03Z","author":[{"full_name":"Veldkamp, Christopher","first_name":"Christopher","last_name":"Veldkamp"},{"full_name":"Kiermaier, Eva","last_name":"Kiermaier","first_name":"Eva","orcid":"0000-0001-6165-5738","id":"3EB04B78-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Gabel Eissens","first_name":"Skylar","full_name":"Gabel Eissens, Skylar"},{"last_name":"Gillitzer","first_name":"Miranda","full_name":"Gillitzer, Miranda"},{"last_name":"Lippner","first_name":"David","full_name":"Lippner, David"},{"full_name":"Disilvio, Frank","first_name":"Frank","last_name":"Disilvio"},{"last_name":"Mueller","first_name":"Casey","full_name":"Mueller, Casey"},{"full_name":"Wantuch, Paeton","first_name":"Paeton","last_name":"Wantuch"},{"first_name":"Gary","last_name":"Chaffee","full_name":"Chaffee, Gary"},{"full_name":"Famiglietti, Michael","first_name":"Michael","last_name":"Famiglietti"},{"full_name":"Zgoba, Danielle","first_name":"Danielle","last_name":"Zgoba"},{"full_name":"Bailey, Asha","first_name":"Asha","last_name":"Bailey"},{"full_name":"Bah, Yaya","first_name":"Yaya","last_name":"Bah"},{"first_name":"Samantha","last_name":"Engebretson","full_name":"Engebretson, Samantha"},{"first_name":"David","last_name":"Graupner","full_name":"Graupner, David"},{"full_name":"Lackner, Emily","first_name":"Emily","last_name":"Lackner"},{"last_name":"Larosa","first_name":"Vincent","full_name":"Larosa, Vincent"},{"first_name":"Tysha","last_name":"Medeiros","full_name":"Medeiros, Tysha"},{"first_name":"Michael","last_name":"Olson","full_name":"Olson, Michael"},{"full_name":"Phillips, Andrew","last_name":"Phillips","first_name":"Andrew"},{"first_name":"Harley","last_name":"Pyles","full_name":"Pyles, Harley"},{"first_name":"Amanda","last_name":"Richard","full_name":"Richard, Amanda"},{"first_name":"Scott","last_name":"Schoeller","full_name":"Schoeller, Scott"},{"full_name":"Touzeau, Boris","first_name":"Boris","last_name":"Touzeau"},{"first_name":"Larry","last_name":"Williams","full_name":"Williams, Larry"},{"id":"41E9FBEA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6620-9179","first_name":"Michael K","last_name":"Sixt","full_name":"Sixt, Michael K"},{"first_name":"Francis","last_name":"Peterson","full_name":"Peterson, Francis"}],"publist_id":"5548","ec_funded":1,"project":[{"_id":"25A603A2-B435-11E9-9278-68D0E5697425","grant_number":"281556","name":"Cytoskeletal force generation and force transduction of migrating leukocytes (EU)","call_identifier":"FP7"}],"quality_controlled":"1","external_id":{"pmid":["26115234"]},"oa":1,"main_file_link":[{"open_access":"1","url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4809050/"}],"language":[{"iso":"eng"}],"doi":"10.1021/acs.biochem.5b00560","month":"06","intvolume":" 54","title":"Solution structure of CCL19 and identification of overlapping CCR7 and PSGL-1 binding sites","status":"public","_id":"1618","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","oa_version":"Submitted Version","type":"journal_article","issue":"27","abstract":[{"lang":"eng","text":"CCL19 and CCL21 are chemokines involved in the trafficking of immune cells, particularly within the lymphatic system, through activation of CCR7. Concurrent expression of PSGL-1 and CCR7 in naive T-cells enhances recruitment of these cells to secondary lymphoid organs by CCL19 and CCL21. Here the solution structure of CCL19 is reported. It contains a canonical chemokine domain. Chemical shift mapping shows the N-termini of PSGL-1 and CCR7 have overlapping binding sites for CCL19 and binding is competitive. Implications for the mechanism of PSGL-1's enhancement of resting T-cell recruitment are discussed."}],"page":"4163 - 4166","citation":{"ama":"Veldkamp C, Kiermaier E, Gabel Eissens S, et al. Solution structure of CCL19 and identification of overlapping CCR7 and PSGL-1 binding sites. Biochemistry. 2015;54(27):4163-4166. doi:10.1021/acs.biochem.5b00560","ista":"Veldkamp C, Kiermaier E, Gabel Eissens S, Gillitzer M, Lippner D, Disilvio F, Mueller C, Wantuch P, Chaffee G, Famiglietti M, Zgoba D, Bailey A, Bah Y, Engebretson S, Graupner D, Lackner E, Larosa V, Medeiros T, Olson M, Phillips A, Pyles H, Richard A, Schoeller S, Touzeau B, Williams L, Sixt MK, Peterson F. 2015. Solution structure of CCL19 and identification of overlapping CCR7 and PSGL-1 binding sites. Biochemistry. 54(27), 4163–4166.","ieee":"C. Veldkamp et al., “Solution structure of CCL19 and identification of overlapping CCR7 and PSGL-1 binding sites,” Biochemistry, vol. 54, no. 27. American Chemical Society, pp. 4163–4166, 2015.","apa":"Veldkamp, C., Kiermaier, E., Gabel Eissens, S., Gillitzer, M., Lippner, D., Disilvio, F., … Peterson, F. (2015). Solution structure of CCL19 and identification of overlapping CCR7 and PSGL-1 binding sites. Biochemistry. American Chemical Society. https://doi.org/10.1021/acs.biochem.5b00560","mla":"Veldkamp, Christopher, et al. “Solution Structure of CCL19 and Identification of Overlapping CCR7 and PSGL-1 Binding Sites.” Biochemistry, vol. 54, no. 27, American Chemical Society, 2015, pp. 4163–66, doi:10.1021/acs.biochem.5b00560.","short":"C. Veldkamp, E. Kiermaier, S. Gabel Eissens, M. Gillitzer, D. Lippner, F. Disilvio, C. Mueller, P. Wantuch, G. Chaffee, M. Famiglietti, D. Zgoba, A. Bailey, Y. Bah, S. Engebretson, D. Graupner, E. Lackner, V. Larosa, T. Medeiros, M. Olson, A. Phillips, H. Pyles, A. Richard, S. Schoeller, B. Touzeau, L. Williams, M.K. Sixt, F. Peterson, Biochemistry 54 (2015) 4163–4166.","chicago":"Veldkamp, Christopher, Eva Kiermaier, Skylar Gabel Eissens, Miranda Gillitzer, David Lippner, Frank Disilvio, Casey Mueller, et al. “Solution Structure of CCL19 and Identification of Overlapping CCR7 and PSGL-1 Binding Sites.” Biochemistry. American Chemical Society, 2015. https://doi.org/10.1021/acs.biochem.5b00560."},"publication":"Biochemistry","date_published":"2015-06-26T00:00:00Z","scopus_import":"1","article_processing_charge":"No","day":"26"},{"publication_identifier":{"isbn":["9780262330275"]},"month":"07","language":[{"iso":"eng"}],"doi":"10.7551/978-0-262-33027-5-ch018","conference":{"start_date":"2015-07-20","location":"York, United Kingdom","end_date":"2015-07-24","name":"ECAL: European Conference on Artificial Life"},"project":[{"_id":"25681D80-B435-11E9-9278-68D0E5697425","grant_number":"291734","call_identifier":"FP7","name":"International IST Postdoc Fellowship Programme"}],"quality_controlled":"1","oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"license":"https://creativecommons.org/licenses/by/4.0/","ec_funded":1,"file_date_updated":"2023-05-02T07:02:59Z","date_created":"2023-04-30T22:01:07Z","date_updated":"2023-05-02T07:06:21Z","author":[{"id":"3A276B68-F248-11E8-B48F-1D18A9856A87","last_name":"Martius","first_name":"Georg S","full_name":"Martius, Georg S"},{"first_name":"Eckehard","last_name":"Olbrich","full_name":"Olbrich, Eckehard"}],"department":[{"_id":"ChLa"}],"publisher":"MIT Press","publication_status":"published","acknowledgement":"This work was supported by the DFG (SPP 1527) and the EU (FP7, REA grant no 291734).","year":"2015","article_processing_charge":"No","has_accepted_license":"1","day":"01","scopus_import":"1","date_published":"2015-07-01T00:00:00Z","page":"78","citation":{"ama":"Martius GS, Olbrich E. Quantifying self-organizing behavior of autonomous robots. In: Proceedings of the 13th European Conference on Artificial Life. MIT Press; 2015:78. doi:10.7551/978-0-262-33027-5-ch018","ista":"Martius GS, Olbrich E. 2015. Quantifying self-organizing behavior of autonomous robots. Proceedings of the 13th European Conference on Artificial Life. ECAL: European Conference on Artificial Life, 78.","apa":"Martius, G. S., & Olbrich, E. (2015). Quantifying self-organizing behavior of autonomous robots. In Proceedings of the 13th European Conference on Artificial Life (p. 78). York, United Kingdom: MIT Press. https://doi.org/10.7551/978-0-262-33027-5-ch018","ieee":"G. S. Martius and E. Olbrich, “Quantifying self-organizing behavior of autonomous robots,” in Proceedings of the 13th European Conference on Artificial Life, York, United Kingdom, 2015, p. 78.","mla":"Martius, Georg S., and Eckehard Olbrich. “Quantifying Self-Organizing Behavior of Autonomous Robots.” Proceedings of the 13th European Conference on Artificial Life, MIT Press, 2015, p. 78, doi:10.7551/978-0-262-33027-5-ch018.","short":"G.S. Martius, E. Olbrich, in:, Proceedings of the 13th European Conference on Artificial Life, MIT Press, 2015, p. 78.","chicago":"Martius, Georg S, and Eckehard Olbrich. “Quantifying Self-Organizing Behavior of Autonomous Robots.” In Proceedings of the 13th European Conference on Artificial Life, 78. MIT Press, 2015. https://doi.org/10.7551/978-0-262-33027-5-ch018."},"publication":"Proceedings of the 13th European Conference on Artificial Life","type":"conference","file":[{"checksum":"880eabe59c9df12f06a882aa1bc4e600","success":1,"date_created":"2023-05-02T07:02:59Z","date_updated":"2023-05-02T07:02:59Z","relation":"main_file","file_id":"12882","file_size":1674241,"content_type":"application/pdf","creator":"dernst","access_level":"open_access","file_name":"2015_ECAL_Martius.pdf"}],"oa_version":"Published Version","title":"Quantifying self-organizing behavior of autonomous robots","ddc":["000"],"status":"public","_id":"12881","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"oa_version":"None","_id":"12196","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","title":"The chromatin remodeler SPLAYED negatively regulates SNC1-mediated immunity","intvolume":" 56","abstract":[{"lang":"eng","text":"SNC1 (SUPPRESSOR OF NPR1, CONSTITUTIVE 1) is one of a suite of intracellular Arabidopsis NOD-like receptor (NLR) proteins which, upon activation, result in the induction of defense responses. However, the molecular mechanisms underlying NLR activation and the subsequent provocation of immune responses are only partially characterized. To identify negative regulators of NLR-mediated immunity, a forward genetic screen was undertaken to search for enhancers of the dwarf, autoimmune gain-of-function snc1 mutant. To avoid lethality resulting from severe dwarfism, the screen was conducted using mos4 (modifier of snc1, 4) snc1 plants, which display wild-type-like morphology and resistance. M2 progeny were screened for mutant, snc1-enhancing (muse) mutants displaying a reversion to snc1-like phenotypes. The muse9 mos4 snc1 triple mutant was found to exhibit dwarf morphology, elevated expression of the pPR2-GUS defense marker reporter gene and enhanced resistance to the oomycete pathogen Hyaloperonospora arabidopsidis Noco2. Via map-based cloning and Illumina sequencing, it was determined that the muse9 mutation is in the gene encoding the SWI/SNF chromatin remodeler SYD (SPLAYED), and was thus renamed syd-10. The syd-10 single mutant has no observable alteration from wild-type-like resistance, although the syd-4 T-DNA insertion allele displays enhanced resistance to the bacterial pathogen Pseudomonas syringae pv. maculicola ES4326. Transcription of SNC1 is increased in both syd-4 and syd-10. These data suggest that SYD plays a subtle, specific role in the regulation of SNC1 expression and SNC1-mediated immunity. SYD may work with other proteins at the chromatin level to repress SNC1 transcription; such regulation is important for fine-tuning the expression of NLR-encoding genes to prevent unpropitious autoimmunity."}],"issue":"8","type":"journal_article","date_published":"2015-08-01T00:00:00Z","publication":"Plant and Cell Physiology","citation":{"ama":"Johnson KCM, Xia S, Feng X, Li X. The chromatin remodeler SPLAYED negatively regulates SNC1-mediated immunity. Plant and Cell Physiology. 2015;56(8):1616-1623. doi:10.1093/pcp/pcv087","ista":"Johnson KCM, Xia S, Feng X, Li X. 2015. The chromatin remodeler SPLAYED negatively regulates SNC1-mediated immunity. Plant and Cell Physiology. 56(8), 1616–1623.","apa":"Johnson, K. C. M., Xia, S., Feng, X., & Li, X. (2015). The chromatin remodeler SPLAYED negatively regulates SNC1-mediated immunity. Plant and Cell Physiology. Oxford University Press. https://doi.org/10.1093/pcp/pcv087","ieee":"K. C. M. Johnson, S. Xia, X. Feng, and X. Li, “The chromatin remodeler SPLAYED negatively regulates SNC1-mediated immunity,” Plant and Cell Physiology, vol. 56, no. 8. Oxford University Press, pp. 1616–1623, 2015.","mla":"Johnson, Kaeli C. M., et al. “The Chromatin Remodeler SPLAYED Negatively Regulates SNC1-Mediated Immunity.” Plant and Cell Physiology, vol. 56, no. 8, Oxford University Press, 2015, pp. 1616–23, doi:10.1093/pcp/pcv087.","short":"K.C.M. Johnson, S. Xia, X. Feng, X. Li, Plant and Cell Physiology 56 (2015) 1616–1623.","chicago":"Johnson, Kaeli C.M., Shitou Xia, Xiaoqi Feng, and Xin Li. “The Chromatin Remodeler SPLAYED Negatively Regulates SNC1-Mediated Immunity.” Plant and Cell Physiology. Oxford University Press, 2015. https://doi.org/10.1093/pcp/pcv087."},"article_type":"original","page":"1616-1623","article_processing_charge":"No","scopus_import":"1","keyword":["Cell Biology","Plant Science","Physiology","General Medicine"],"author":[{"first_name":"Kaeli C.M.","last_name":"Johnson","full_name":"Johnson, Kaeli C.M."},{"full_name":"Xia, Shitou","first_name":"Shitou","last_name":"Xia"},{"last_name":"Feng","first_name":"Xiaoqi","orcid":"0000-0002-4008-1234","id":"e0164712-22ee-11ed-b12a-d80fcdf35958","full_name":"Feng, Xiaoqi"},{"last_name":"Li","first_name":"Xin","full_name":"Li, Xin"}],"date_updated":"2023-05-08T11:03:23Z","date_created":"2023-01-16T09:20:22Z","volume":56,"acknowledgement":"This work was supported by the National Sciences and Engineering Research Council of Canada [Canada Graduate\r\nScholarship–Doctoral to K.J.; Discovery Grant to X.L.]; the department of Botany at the University of f British Columbia\r\n[the Dewar Cooper Memorial Fund to X.L.].The authors would like to thank Dr. Yuelin Zhang and Ms. Yan Li for their assistance with next-generation sequencing, and Mr. Charles Copeland for critical reading of the manuscript.","year":"2015","pmid":1,"publication_status":"published","publisher":"Oxford University Press","department":[{"_id":"XiFe"}],"extern":"1","doi":"10.1093/pcp/pcv087","language":[{"iso":"eng"}],"external_id":{"pmid":["26063389"]},"quality_controlled":"1","month":"08","publication_identifier":{"issn":["0032-0781","1471-9053"]}},{"publication_identifier":{"issn":["1748-3387"],"eissn":["1748-3395"]},"month":"11","quality_controlled":"1","external_id":{"pmid":["26595335"]},"language":[{"iso":"eng"}],"doi":"10.1038/nnano.2015.256","extern":"1","publisher":"Springer Nature","publication_status":"published","pmid":1,"year":"2015","volume":11,"date_created":"2023-08-01T09:44:04Z","date_updated":"2023-08-07T12:55:46Z","author":[{"last_name":"Zhao","first_name":"Hui","full_name":"Zhao, Hui"},{"full_name":"Sen, Soumyo","first_name":"Soumyo","last_name":"Sen"},{"last_name":"Udayabhaskararao","first_name":"T.","full_name":"Udayabhaskararao, T."},{"last_name":"Sawczyk","first_name":"Michał","full_name":"Sawczyk, Michał"},{"full_name":"Kučanda, Kristina","first_name":"Kristina","last_name":"Kučanda"},{"full_name":"Manna, Debasish","last_name":"Manna","first_name":"Debasish"},{"full_name":"Kundu, Pintu K.","first_name":"Pintu K.","last_name":"Kundu"},{"last_name":"Lee","first_name":"Ji-Woong","full_name":"Lee, Ji-Woong"},{"full_name":"Král, Petr","last_name":"Král","first_name":"Petr"},{"full_name":"Klajn, Rafal","first_name":"Rafal","last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b"}],"keyword":["Electrical and Electronic Engineering","Condensed Matter Physics","General Materials Science","Biomedical Engineering","Atomic and Molecular Physics","and Optics","Bioengineering"],"scopus_import":"1","article_processing_charge":"No","day":"23","page":"82-88","article_type":"original","citation":{"ama":"Zhao H, Sen S, Udayabhaskararao T, et al. Reversible trapping and reaction acceleration within dynamically self-assembling nanoflasks. Nature Nanotechnology. 2015;11:82-88. doi:10.1038/nnano.2015.256","ieee":"H. Zhao et al., “Reversible trapping and reaction acceleration within dynamically self-assembling nanoflasks,” Nature Nanotechnology, vol. 11. Springer Nature, pp. 82–88, 2015.","apa":"Zhao, H., Sen, S., Udayabhaskararao, T., Sawczyk, M., Kučanda, K., Manna, D., … Klajn, R. (2015). Reversible trapping and reaction acceleration within dynamically self-assembling nanoflasks. Nature Nanotechnology. Springer Nature. https://doi.org/10.1038/nnano.2015.256","ista":"Zhao H, Sen S, Udayabhaskararao T, Sawczyk M, Kučanda K, Manna D, Kundu PK, Lee J-W, Král P, Klajn R. 2015. Reversible trapping and reaction acceleration within dynamically self-assembling nanoflasks. Nature Nanotechnology. 11, 82–88.","short":"H. Zhao, S. Sen, T. Udayabhaskararao, M. Sawczyk, K. Kučanda, D. Manna, P.K. Kundu, J.-W. Lee, P. Král, R. Klajn, Nature Nanotechnology 11 (2015) 82–88.","mla":"Zhao, Hui, et al. “Reversible Trapping and Reaction Acceleration within Dynamically Self-Assembling Nanoflasks.” Nature Nanotechnology, vol. 11, Springer Nature, 2015, pp. 82–88, doi:10.1038/nnano.2015.256.","chicago":"Zhao, Hui, Soumyo Sen, T. Udayabhaskararao, Michał Sawczyk, Kristina Kučanda, Debasish Manna, Pintu K. Kundu, Ji-Woong Lee, Petr Král, and Rafal Klajn. “Reversible Trapping and Reaction Acceleration within Dynamically Self-Assembling Nanoflasks.” Nature Nanotechnology. Springer Nature, 2015. https://doi.org/10.1038/nnano.2015.256."},"publication":"Nature Nanotechnology","date_published":"2015-11-23T00:00:00Z","type":"journal_article","abstract":[{"lang":"eng","text":"The chemical behaviour of molecules can be significantly modified by confinement to volumes comparable to the dimensions of the molecules. Although such confined spaces can be found in various nanostructured materials, such as zeolites, nanoporous organic frameworks and colloidal nanocrystal assemblies, the slow diffusion of molecules in and out of these materials has greatly hampered studying the effect of confinement on their physicochemical properties. Here, we show that this diffusion limitation can be overcome by reversibly creating and destroying confined environments by means of ultraviolet and visible light irradiation. We use colloidal nanocrystals functionalized with light-responsive ligands that readily self-assemble and trap various molecules from the surrounding bulk solution. Once trapped, these molecules can undergo chemical reactions with increased rates and with stereoselectivities significantly different from those in bulk solution. Illumination with visible light disassembles these nanoflasks, releasing the product in solution and thereby establishes a catalytic cycle. These dynamic nanoflasks can be useful for studying chemical reactivities in confined environments and for synthesizing molecules that are otherwise hard to achieve in bulk solution."}],"intvolume":" 11","title":"Reversible trapping and reaction acceleration within dynamically self-assembling nanoflasks","status":"public","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13392","oa_version":"None"},{"oa_version":"None","_id":"13394","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","title":"Light-controlled self-assembly of non-photoresponsive nanoparticles","intvolume":" 7","abstract":[{"text":"The ability to guide the assembly of nanosized objects reversibly with external stimuli, in particular light, is of fundamental importance, and it contributes to the development of applications as diverse as nanofabrication and controlled drug delivery. However, all the systems described to date are based on nanoparticles (NPs) that are inherently photoresponsive, which makes their preparation cumbersome and can markedly hamper their performance. Here we describe a conceptually new methodology to assemble NPs reversibly using light that does not require the particles to be functionalized with light-responsive ligands. Our strategy is based on the use of a photoswitchable medium that responds to light in such a way that it modulates the interparticle interactions. NP assembly proceeds quantitatively and without apparent fatigue, both in solution and in gels. Exposing the gels to light in a spatially controlled manner allowed us to draw images that spontaneously disappeared after a specific period of time.","lang":"eng"}],"type":"journal_article","date_published":"2015-07-20T00:00:00Z","publication":"Nature Chemistry","citation":{"ama":"Kundu PK, Samanta D, Leizrowice R, et al. Light-controlled self-assembly of non-photoresponsive nanoparticles. Nature Chemistry. 2015;7:646-652. doi:10.1038/nchem.2303","apa":"Kundu, P. K., Samanta, D., Leizrowice, R., Margulis, B., Zhao, H., Börner, M., … Klajn, R. (2015). Light-controlled self-assembly of non-photoresponsive nanoparticles. Nature Chemistry. Springer Nature. https://doi.org/10.1038/nchem.2303","ieee":"P. K. Kundu et al., “Light-controlled self-assembly of non-photoresponsive nanoparticles,” Nature Chemistry, vol. 7. Springer Nature, pp. 646–652, 2015.","ista":"Kundu PK, Samanta D, Leizrowice R, Margulis B, Zhao H, Börner M, Udayabhaskararao T, Manna D, Klajn R. 2015. Light-controlled self-assembly of non-photoresponsive nanoparticles. Nature Chemistry. 7, 646–652.","short":"P.K. Kundu, D. Samanta, R. Leizrowice, B. Margulis, H. Zhao, M. Börner, T. Udayabhaskararao, D. Manna, R. Klajn, Nature Chemistry 7 (2015) 646–652.","mla":"Kundu, Pintu K., et al. “Light-Controlled Self-Assembly of Non-Photoresponsive Nanoparticles.” Nature Chemistry, vol. 7, Springer Nature, 2015, pp. 646–52, doi:10.1038/nchem.2303.","chicago":"Kundu, Pintu K., Dipak Samanta, Ron Leizrowice, Baruch Margulis, Hui Zhao, Martin Börner, T. Udayabhaskararao, Debasish Manna, and Rafal Klajn. “Light-Controlled Self-Assembly of Non-Photoresponsive Nanoparticles.” Nature Chemistry. Springer Nature, 2015. https://doi.org/10.1038/nchem.2303."},"article_type":"original","page":"646-652","day":"20","article_processing_charge":"No","scopus_import":"1","keyword":["General Chemical Engineering","General Chemistry"],"author":[{"full_name":"Kundu, Pintu K.","first_name":"Pintu K.","last_name":"Kundu"},{"full_name":"Samanta, Dipak","last_name":"Samanta","first_name":"Dipak"},{"last_name":"Leizrowice","first_name":"Ron","full_name":"Leizrowice, Ron"},{"last_name":"Margulis","first_name":"Baruch","full_name":"Margulis, Baruch"},{"full_name":"Zhao, Hui","last_name":"Zhao","first_name":"Hui"},{"first_name":"Martin","last_name":"Börner","full_name":"Börner, Martin"},{"full_name":"Udayabhaskararao, T.","first_name":"T.","last_name":"Udayabhaskararao"},{"last_name":"Manna","first_name":"Debasish","full_name":"Manna, Debasish"},{"full_name":"Klajn, Rafal","first_name":"Rafal","last_name":"Klajn","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b"}],"date_updated":"2023-08-07T13:00:15Z","date_created":"2023-08-01T09:44:33Z","volume":7,"year":"2015","pmid":1,"publication_status":"published","publisher":"Springer Nature","extern":"1","doi":"10.1038/nchem.2303","language":[{"iso":"eng"}],"external_id":{"pmid":["26201741"]},"quality_controlled":"1","month":"07","publication_identifier":{"issn":["1755-4330"],"eissn":["1755-4349"]}},{"month":"10","publication_identifier":{"eissn":["1521-3773"],"issn":["1433-7851"]},"external_id":{"pmid":["25959725"]},"quality_controlled":"1","doi":"10.1002/anie.201502419","language":[{"iso":"eng"}],"extern":"1","year":"2015","pmid":1,"publication_status":"published","publisher":"Wiley","author":[{"first_name":"Debasish","last_name":"Manna","full_name":"Manna, Debasish"},{"full_name":"Udayabhaskararao, Thumu","last_name":"Udayabhaskararao","first_name":"Thumu"},{"full_name":"Zhao, Hui","first_name":"Hui","last_name":"Zhao"},{"full_name":"Klajn, Rafal","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","first_name":"Rafal","last_name":"Klajn"}],"date_created":"2023-08-01T09:44:19Z","date_updated":"2023-08-07T12:58:29Z","volume":54,"scopus_import":"1","keyword":["General Chemistry","Catalysis"],"day":"01","article_processing_charge":"No","publication":"Angewandte Chemie International Edition","citation":{"apa":"Manna, D., Udayabhaskararao, T., Zhao, H., & Klajn, R. (2015). Orthogonal light-induced self-assembly of nanoparticles using differently substituted azobenzenes. Angewandte Chemie International Edition. Wiley. https://doi.org/10.1002/anie.201502419","ieee":"D. Manna, T. Udayabhaskararao, H. Zhao, and R. Klajn, “Orthogonal light-induced self-assembly of nanoparticles using differently substituted azobenzenes,” Angewandte Chemie International Edition, vol. 54, no. 42. Wiley, pp. 12394–12397, 2015.","ista":"Manna D, Udayabhaskararao T, Zhao H, Klajn R. 2015. Orthogonal light-induced self-assembly of nanoparticles using differently substituted azobenzenes. Angewandte Chemie International Edition. 54(42), 12394–12397.","ama":"Manna D, Udayabhaskararao T, Zhao H, Klajn R. Orthogonal light-induced self-assembly of nanoparticles using differently substituted azobenzenes. Angewandte Chemie International Edition. 2015;54(42):12394-12397. doi:10.1002/anie.201502419","chicago":"Manna, Debasish, Thumu Udayabhaskararao, Hui Zhao, and Rafal Klajn. “Orthogonal Light-Induced Self-Assembly of Nanoparticles Using Differently Substituted Azobenzenes.” Angewandte Chemie International Edition. Wiley, 2015. https://doi.org/10.1002/anie.201502419.","short":"D. Manna, T. Udayabhaskararao, H. Zhao, R. Klajn, Angewandte Chemie International Edition 54 (2015) 12394–12397.","mla":"Manna, Debasish, et al. “Orthogonal Light-Induced Self-Assembly of Nanoparticles Using Differently Substituted Azobenzenes.” Angewandte Chemie International Edition, vol. 54, no. 42, Wiley, 2015, pp. 12394–97, doi:10.1002/anie.201502419."},"article_type":"original","page":"12394-12397","date_published":"2015-10-01T00:00:00Z","type":"journal_article","abstract":[{"text":"Precise control of the self-assembly of selected components within complex mixtures is a challenging goal whose realization is important for fabricating novel nanomaterials. Herein we show that by decorating the surfaces of metallic nanoparticles with differently substituted azobenzenes, it is possible to modulate the wavelength of light at which the self-assembly of these nanoparticles is induced. Exposing a mixture of two types of nanoparticles, each functionalized with a different azobenzene, to UV or blue light induces the selective self-assembly of only one type of nanoparticles. Irradiation with the other wavelength triggers the disassembly of the aggregates, and the simultaneous self-assembly of nanoparticles of the other type. By placing both types of azobenzenes on the same nanoparticles, we created unique materials (“frustrated” nanoparticles) whose self-assembly is induced irrespective of the wavelength of the incident light.","lang":"eng"}],"issue":"42","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13393","status":"public","title":"Orthogonal light-induced self-assembly of nanoparticles using differently substituted azobenzenes","intvolume":" 54","oa_version":"None"},{"publication_identifier":{"issn":["1359-7345"],"eissn":["1364-548X"]},"month":"11","language":[{"iso":"eng"}],"doi":"10.1039/c4cc08541h","quality_controlled":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1039/C4CC08541H"}],"external_id":{"pmid":["25417754"]},"oa":1,"extern":"1","volume":51,"date_updated":"2023-08-07T13:01:53Z","date_created":"2023-08-01T09:44:48Z","author":[{"full_name":"Lee, Ji-Woong","last_name":"Lee","first_name":"Ji-Woong"},{"full_name":"Klajn, Rafal","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","last_name":"Klajn","first_name":"Rafal"}],"publisher":"Royal Society of Chemistry","publication_status":"published","pmid":1,"year":"2015","article_processing_charge":"No","day":"18","keyword":["Materials Chemistry","Metals and Alloys","Surfaces","Coatings and Films","General Chemistry","Ceramics and Composites","Electronic","Optical and Magnetic Materials","Catalysis"],"scopus_import":"1","date_published":"2015-11-18T00:00:00Z","page":"2036-2039","article_type":"original","citation":{"ama":"Lee J-W, Klajn R. Dual-responsive nanoparticles that aggregate under the simultaneous action of light and CO2. Chemical Communications. 2015;51(11):2036-2039. doi:10.1039/c4cc08541h","ista":"Lee J-W, Klajn R. 2015. Dual-responsive nanoparticles that aggregate under the simultaneous action of light and CO2. Chemical Communications. 51(11), 2036–2039.","ieee":"J.-W. Lee and R. Klajn, “Dual-responsive nanoparticles that aggregate under the simultaneous action of light and CO2,” Chemical Communications, vol. 51, no. 11. Royal Society of Chemistry, pp. 2036–2039, 2015.","apa":"Lee, J.-W., & Klajn, R. (2015). Dual-responsive nanoparticles that aggregate under the simultaneous action of light and CO2. Chemical Communications. Royal Society of Chemistry. https://doi.org/10.1039/c4cc08541h","mla":"Lee, Ji-Woong, and Rafal Klajn. “Dual-Responsive Nanoparticles That Aggregate under the Simultaneous Action of Light and CO2.” Chemical Communications, vol. 51, no. 11, Royal Society of Chemistry, 2015, pp. 2036–39, doi:10.1039/c4cc08541h.","short":"J.-W. Lee, R. Klajn, Chemical Communications 51 (2015) 2036–2039.","chicago":"Lee, Ji-Woong, and Rafal Klajn. “Dual-Responsive Nanoparticles That Aggregate under the Simultaneous Action of Light and CO2.” Chemical Communications. Royal Society of Chemistry, 2015. https://doi.org/10.1039/c4cc08541h."},"publication":"Chemical Communications","issue":"11","abstract":[{"lang":"eng","text":"Metallic nanoparticles co-functionalised with monolayers of UV- and CO2-sensitive ligands were prepared and shown to respond to these two types of stimuli reversibly and in an orthogonal fashion. The composition of the coating could be tailored to yield nanoparticles capable of aggregating exclusively when both UV and CO2 were applied at the same time, analogously to the behaviour of an AND logic gate."}],"type":"journal_article","oa_version":"Published Version","intvolume":" 51","title":"Dual-responsive nanoparticles that aggregate under the simultaneous action of light and CO2","status":"public","_id":"13395","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87"},{"year":"2015","pmid":1,"publication_status":"published","publisher":"American Chemical Society","author":[{"full_name":"Moldt, Thomas","first_name":"Thomas","last_name":"Moldt"},{"last_name":"Brete","first_name":"Daniel","full_name":"Brete, Daniel"},{"first_name":"Daniel","last_name":"Przyrembel","full_name":"Przyrembel, Daniel"},{"first_name":"Sanjib","last_name":"Das","full_name":"Das, Sanjib"},{"last_name":"Goldman","first_name":"Joel R.","full_name":"Goldman, Joel R."},{"last_name":"Kundu","first_name":"Pintu K.","full_name":"Kundu, Pintu K."},{"full_name":"Gahl, Cornelius","first_name":"Cornelius","last_name":"Gahl"},{"last_name":"Klajn","first_name":"Rafal","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","full_name":"Klajn, Rafal"},{"last_name":"Weinelt","first_name":"Martin","full_name":"Weinelt, Martin"}],"date_updated":"2023-08-07T13:05:04Z","date_created":"2023-08-01T09:45:02Z","volume":31,"extern":"1","external_id":{"pmid":["25544061"]},"quality_controlled":"1","doi":"10.1021/la504291n","language":[{"iso":"eng"}],"month":"01","publication_identifier":{"eissn":["1520-5827"],"issn":["0743-7463"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13396","status":"public","title":"Tailoring the properties of surface-immobilized azobenzenes by monolayer dilution and surface curvature","intvolume":" 31","oa_version":"None","type":"journal_article","abstract":[{"lang":"eng","text":"Photoswitching in densely packed azobenzene self-assembled monolayers (SAMs) is strongly affected by steric constraints and excitonic coupling between neighboring chromophores. Therefore, control of the chromophore density is essential for enhancing and manipulating the photoisomerization yield. We systematically compare two methods to achieve this goal: First, we assemble monocomponent azobenzene–alkanethiolate SAMs on gold nanoparticles of varying size. Second, we form mixed SAMs of azobenzene–alkanethiolates and “dummy” alkanethiolates on planar substrates. Both methods lead to a gradual decrease of the chromophore density and enable efficient photoswitching with low-power light sources. X-ray spectroscopy reveals that coadsorption from solution yields mixtures with tunable composition. The orientation of the chromophores with respect to the surface normal changes from a tilted to an upright position with increasing azobenzene density. For both systems, optical spectroscopy reveals a pronounced excitonic shift that increases with the chromophore density. In spite of exciting the optical transition of the monomer, the main spectral change in mixed SAMs occurs in the excitonic band. In addition, the photoisomerization yield decreases only slightly by increasing the azobenzene–alkanethiolate density, and we observed photoswitching even with minor dilutions. Unlike in solution, azobenzene in the planar SAM can be switched back almost completely by optical excitation from the cis to the original trans state within a short time scale. These observations indicate cooperativity in the photoswitching process of mixed SAMs."}],"issue":"3","publication":"Langmuir","citation":{"ama":"Moldt T, Brete D, Przyrembel D, et al. Tailoring the properties of surface-immobilized azobenzenes by monolayer dilution and surface curvature. Langmuir. 2015;31(3):1048-1057. doi:10.1021/la504291n","ista":"Moldt T, Brete D, Przyrembel D, Das S, Goldman JR, Kundu PK, Gahl C, Klajn R, Weinelt M. 2015. Tailoring the properties of surface-immobilized azobenzenes by monolayer dilution and surface curvature. Langmuir. 31(3), 1048–1057.","apa":"Moldt, T., Brete, D., Przyrembel, D., Das, S., Goldman, J. R., Kundu, P. K., … Weinelt, M. (2015). Tailoring the properties of surface-immobilized azobenzenes by monolayer dilution and surface curvature. Langmuir. American Chemical Society. https://doi.org/10.1021/la504291n","ieee":"T. Moldt et al., “Tailoring the properties of surface-immobilized azobenzenes by monolayer dilution and surface curvature,” Langmuir, vol. 31, no. 3. American Chemical Society, pp. 1048–1057, 2015.","mla":"Moldt, Thomas, et al. “Tailoring the Properties of Surface-Immobilized Azobenzenes by Monolayer Dilution and Surface Curvature.” Langmuir, vol. 31, no. 3, American Chemical Society, 2015, pp. 1048–57, doi:10.1021/la504291n.","short":"T. Moldt, D. Brete, D. Przyrembel, S. Das, J.R. Goldman, P.K. Kundu, C. Gahl, R. Klajn, M. Weinelt, Langmuir 31 (2015) 1048–1057.","chicago":"Moldt, Thomas, Daniel Brete, Daniel Przyrembel, Sanjib Das, Joel R. Goldman, Pintu K. Kundu, Cornelius Gahl, Rafal Klajn, and Martin Weinelt. “Tailoring the Properties of Surface-Immobilized Azobenzenes by Monolayer Dilution and Surface Curvature.” Langmuir. American Chemical Society, 2015. https://doi.org/10.1021/la504291n."},"article_type":"original","page":"1048-1057","date_published":"2015-01-27T00:00:00Z","scopus_import":"1","keyword":["Electrochemistry","Spectroscopy","Surfaces and Interfaces","Condensed Matter Physics","General Materials Science"],"day":"27","article_processing_charge":"No"},{"scopus_import":"1","keyword":["Physical and Theoretical Chemistry"],"day":"02","article_processing_charge":"No","publication":"Faraday Discussions","citation":{"ieee":"G. Singh et al., “Magnetic field-induced self-assembly of iron oxide nanocubes,” Faraday Discussions, vol. 181. Royal Society of Chemistry, pp. 403–421, 2015.","apa":"Singh, G., Chan, H., Udayabhaskararao, T., Gelman, E., Peddis, D., Baskin, A., … Klajn, R. (2015). Magnetic field-induced self-assembly of iron oxide nanocubes. Faraday Discussions. Royal Society of Chemistry. https://doi.org/10.1039/c4fd00265b","ista":"Singh G, Chan H, Udayabhaskararao T, Gelman E, Peddis D, Baskin A, Leitus G, Král P, Klajn R. 2015. Magnetic field-induced self-assembly of iron oxide nanocubes. Faraday Discussions. 181, 403–421.","ama":"Singh G, Chan H, Udayabhaskararao T, et al. Magnetic field-induced self-assembly of iron oxide nanocubes. Faraday Discussions. 2015;181:403-421. doi:10.1039/c4fd00265b","chicago":"Singh, Gurvinder, Henry Chan, T. Udayabhaskararao, Elijah Gelman, Davide Peddis, Artem Baskin, Gregory Leitus, Petr Král, and Rafal Klajn. “Magnetic Field-Induced Self-Assembly of Iron Oxide Nanocubes.” Faraday Discussions. Royal Society of Chemistry, 2015. https://doi.org/10.1039/c4fd00265b.","short":"G. Singh, H. Chan, T. Udayabhaskararao, E. Gelman, D. Peddis, A. Baskin, G. Leitus, P. Král, R. Klajn, Faraday Discussions 181 (2015) 403–421.","mla":"Singh, Gurvinder, et al. “Magnetic Field-Induced Self-Assembly of Iron Oxide Nanocubes.” Faraday Discussions, vol. 181, Royal Society of Chemistry, 2015, pp. 403–21, doi:10.1039/c4fd00265b."},"article_type":"original","page":"403-421","date_published":"2015-01-02T00:00:00Z","type":"journal_article","abstract":[{"text":"Self-assembly of inorganic nanoparticles has been studied extensively for particles having different sizes and compositions. However, relatively little attention has been devoted to how the shape and surface chemistry of magnetic nanoparticles affects their self-assembly properties. Here, we undertook a combined experiment–theory study aimed at better understanding of the self-assembly of cubic magnetite (Fe3O4) particles. We demonstrated that, depending on the experimental parameters, such as the direction of the magnetic field and nanoparticle density, a variety of superstructures can be obtained, including one-dimensional filaments and helices, as well as C-shaped assemblies described here for the first time. Furthermore, we functionalized the surfaces of the magnetic nanocubes with light-sensitive ligands. Using these modified nanoparticles, we were able to achieve orthogonal control of self-assembly using a magnetic field and light.","lang":"eng"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13397","title":"Magnetic field-induced self-assembly of iron oxide nanocubes","status":"public","intvolume":" 181","oa_version":"Published Version","month":"01","publication_identifier":{"eissn":["1364-5498"],"issn":["1359-6640"]},"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1039/C4FD00265B"}],"external_id":{"pmid":["25920522"]},"oa":1,"quality_controlled":"1","doi":"10.1039/c4fd00265b","language":[{"iso":"eng"}],"extern":"1","year":"2015","pmid":1,"publication_status":"published","publisher":"Royal Society of Chemistry","author":[{"last_name":"Singh","first_name":"Gurvinder","full_name":"Singh, Gurvinder"},{"last_name":"Chan","first_name":"Henry","full_name":"Chan, Henry"},{"full_name":"Udayabhaskararao, T.","first_name":"T.","last_name":"Udayabhaskararao"},{"full_name":"Gelman, Elijah","last_name":"Gelman","first_name":"Elijah"},{"last_name":"Peddis","first_name":"Davide","full_name":"Peddis, Davide"},{"full_name":"Baskin, Artem","first_name":"Artem","last_name":"Baskin"},{"first_name":"Gregory","last_name":"Leitus","full_name":"Leitus, Gregory"},{"full_name":"Král, Petr","last_name":"Král","first_name":"Petr"},{"last_name":"Klajn","first_name":"Rafal","id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","full_name":"Klajn, Rafal"}],"date_created":"2023-08-01T09:45:17Z","date_updated":"2023-08-07T13:06:23Z","volume":181},{"intvolume":" 181","status":"public","title":"Field-assisted self-assembly process: General discussion","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"13398","oa_version":"None","type":"journal_article","page":"463-479","article_type":"letter_note","citation":{"chicago":"Sun, Yugang, Leonardo Scarabelli, Nicholas Kotov, Moritz Tebbe, Xiao-Min Lin, Ward Brullot, Lucio Isa, et al. “Field-Assisted Self-Assembly Process: General Discussion.” Faraday Discussions. Royal Society of Chemistry, 2015. https://doi.org/10.1039/c5fd90041g.","short":"Y. Sun, L. Scarabelli, N. Kotov, M. Tebbe, X.-M. Lin, W. Brullot, L. Isa, P. Schurtenberger, H. Moehwald, I. Fedin, O. Velev, D. Faivre, C. Sorensen, R. Perzynski, M. Chanana, Z. Li, F. Bresme, P. Král, E. Firlar, D. Schiffrin, J.B. Souza Junior, A. Fery, E. Shevchenko, O. Tarhan, A.P. Alivisatos, S. Disch, R. Klajn, S. Ghosh, Faraday Discussions 181 (2015) 463–479.","mla":"Sun, Yugang, et al. “Field-Assisted Self-Assembly Process: General Discussion.” Faraday Discussions, vol. 181, Royal Society of Chemistry, 2015, pp. 463–79, doi:10.1039/c5fd90041g.","ieee":"Y. Sun et al., “Field-assisted self-assembly process: General discussion,” Faraday Discussions, vol. 181. Royal Society of Chemistry, pp. 463–479, 2015.","apa":"Sun, Y., Scarabelli, L., Kotov, N., Tebbe, M., Lin, X.-M., Brullot, W., … Ghosh, S. (2015). Field-assisted self-assembly process: General discussion. Faraday Discussions. Royal Society of Chemistry. https://doi.org/10.1039/c5fd90041g","ista":"Sun Y, Scarabelli L, Kotov N, Tebbe M, Lin X-M, Brullot W, Isa L, Schurtenberger P, Moehwald H, Fedin I, Velev O, Faivre D, Sorensen C, Perzynski R, Chanana M, Li Z, Bresme F, Král P, Firlar E, Schiffrin D, Souza Junior JB, Fery A, Shevchenko E, Tarhan O, Alivisatos AP, Disch S, Klajn R, Ghosh S. 2015. Field-assisted self-assembly process: General discussion. Faraday Discussions. 181, 463–479.","ama":"Sun Y, Scarabelli L, Kotov N, et al. Field-assisted self-assembly process: General discussion. Faraday Discussions. 2015;181:463-479. doi:10.1039/c5fd90041g"},"publication":"Faraday Discussions","date_published":"2015-07-07T00:00:00Z","keyword":["Physical and Theoretical Chemistry"],"scopus_import":"1","article_processing_charge":"No","day":"07","publisher":"Royal Society of Chemistry","publication_status":"published","pmid":1,"year":"2015","volume":181,"date_created":"2023-08-01T09:45:29Z","date_updated":"2023-08-08T07:16:20Z","author":[{"first_name":"Yugang","last_name":"Sun","full_name":"Sun, Yugang"},{"first_name":"Leonardo","last_name":"Scarabelli","full_name":"Scarabelli, Leonardo"},{"first_name":"Nicholas","last_name":"Kotov","full_name":"Kotov, Nicholas"},{"last_name":"Tebbe","first_name":"Moritz","full_name":"Tebbe, Moritz"},{"full_name":"Lin, Xiao-Min","last_name":"Lin","first_name":"Xiao-Min"},{"first_name":"Ward","last_name":"Brullot","full_name":"Brullot, Ward"},{"last_name":"Isa","first_name":"Lucio","full_name":"Isa, Lucio"},{"full_name":"Schurtenberger, Peter","first_name":"Peter","last_name":"Schurtenberger"},{"full_name":"Moehwald, Helmuth","last_name":"Moehwald","first_name":"Helmuth"},{"full_name":"Fedin, Igor","first_name":"Igor","last_name":"Fedin"},{"full_name":"Velev, Orlin","last_name":"Velev","first_name":"Orlin"},{"full_name":"Faivre, Damien","first_name":"Damien","last_name":"Faivre"},{"full_name":"Sorensen, Christopher","last_name":"Sorensen","first_name":"Christopher"},{"last_name":"Perzynski","first_name":"Régine","full_name":"Perzynski, Régine"},{"first_name":"Munish","last_name":"Chanana","full_name":"Chanana, Munish"},{"full_name":"Li, Zhihai","last_name":"Li","first_name":"Zhihai"},{"full_name":"Bresme, Fernando","last_name":"Bresme","first_name":"Fernando"},{"last_name":"Král","first_name":"Petr","full_name":"Král, Petr"},{"full_name":"Firlar, Emre","first_name":"Emre","last_name":"Firlar"},{"full_name":"Schiffrin, David","first_name":"David","last_name":"Schiffrin"},{"first_name":"Joao Batista","last_name":"Souza Junior","full_name":"Souza Junior, Joao Batista"},{"full_name":"Fery, Andreas","last_name":"Fery","first_name":"Andreas"},{"full_name":"Shevchenko, Elena","first_name":"Elena","last_name":"Shevchenko"},{"first_name":"Ozgur","last_name":"Tarhan","full_name":"Tarhan, Ozgur"},{"full_name":"Alivisatos, Armand Paul","first_name":"Armand Paul","last_name":"Alivisatos"},{"full_name":"Disch, Sabrina","last_name":"Disch","first_name":"Sabrina"},{"id":"8e84690e-1e48-11ed-a02b-a1e6fb8bb53b","last_name":"Klajn","first_name":"Rafal","full_name":"Klajn, Rafal"},{"full_name":"Ghosh, Suvojit","last_name":"Ghosh","first_name":"Suvojit"}],"extern":"1","quality_controlled":"1","external_id":{"pmid":["26149295"]},"language":[{"iso":"eng"}],"doi":"10.1039/c5fd90041g","publication_identifier":{"issn":["1359-6640"],"eissn":["1364-5498"]},"month":"07"},{"year":"2015","publication_status":"published","publisher":"American Physical Society","author":[{"last_name":"Zhang","first_name":"Song Bin","full_name":"Zhang, Song Bin"},{"full_name":"Baykusheva, Denitsa Rangelova","id":"71b4d059-2a03-11ee-914d-dfa3beed6530","first_name":"Denitsa Rangelova","last_name":"Baykusheva"},{"last_name":"Kraus","first_name":"Peter M.","full_name":"Kraus, Peter M."},{"last_name":"Wörner","first_name":"Hans Jakob","full_name":"Wörner, Hans Jakob"},{"full_name":"Rohringer, Nina","last_name":"Rohringer","first_name":"Nina"}],"date_created":"2023-08-10T06:38:10Z","date_updated":"2023-08-22T08:56:34Z","volume":91,"article_number":"023421","extern":"1","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1504.03933"}],"external_id":{"arxiv":["1504.03933"]},"oa":1,"quality_controlled":"1","doi":"10.1103/physreva.91.023421","language":[{"iso":"eng"}],"month":"02","publication_identifier":{"eissn":["1094-1622"],"issn":["1050-2947"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14017","title":"Theoretical study of molecular electronic and rotational coherences by high-order-harmonic generation","status":"public","intvolume":" 91","oa_version":"Preprint","type":"journal_article","abstract":[{"lang":"eng","text":"The detection of electron motion and electronic wave-packet dynamics is one of the core goals of attosecond science. Recently, choosing the nitric oxide molecule as an example, we have introduced and demonstrated an experimental approach to measure coupled valence electronic and rotational wave packets using high-order-harmonic-generation (HHG) spectroscopy [Kraus et al., Phys. Rev. Lett. 111, 243005 (2013)]. A short outline of the theory to describe the combination of the pump and HHG probe process was published together with an extensive discussion of experimental results [Baykusheva et al., Faraday Discuss. 171, 113 (2014)]. The comparison of theory and experiment showed good agreement on a quantitative level. Here, we present the theory in detail, which is based on a generalized density-matrix approach that describes the pump process and the subsequent probing of the wave packets by a semiclassical quantitative rescattering approach. An in-depth analysis of the different Raman scattering contributions to the creation of the coupled rotational and electronic spin-orbit wave packets is made. We present results for parallel and perpendicular linear polarizations of the pump and probe laser pulses. Furthermore, an analysis of the combined rotational-electronic density matrix in terms of irreducible components is presented that facilitates interpretation of the results."}],"issue":"2","publication":"Physical Review A","citation":{"ama":"Zhang SB, Baykusheva DR, Kraus PM, Wörner HJ, Rohringer N. Theoretical study of molecular electronic and rotational coherences by high-order-harmonic generation. Physical Review A. 2015;91(2). doi:10.1103/physreva.91.023421","ista":"Zhang SB, Baykusheva DR, Kraus PM, Wörner HJ, Rohringer N. 2015. Theoretical study of molecular electronic and rotational coherences by high-order-harmonic generation. Physical Review A. 91(2), 023421.","ieee":"S. B. Zhang, D. R. Baykusheva, P. M. Kraus, H. J. Wörner, and N. Rohringer, “Theoretical study of molecular electronic and rotational coherences by high-order-harmonic generation,” Physical Review A, vol. 91, no. 2. American Physical Society, 2015.","apa":"Zhang, S. B., Baykusheva, D. R., Kraus, P. M., Wörner, H. J., & Rohringer, N. (2015). Theoretical study of molecular electronic and rotational coherences by high-order-harmonic generation. Physical Review A. American Physical Society. https://doi.org/10.1103/physreva.91.023421","mla":"Zhang, Song Bin, et al. “Theoretical Study of Molecular Electronic and Rotational Coherences by High-Order-Harmonic Generation.” Physical Review A, vol. 91, no. 2, 023421, American Physical Society, 2015, doi:10.1103/physreva.91.023421.","short":"S.B. Zhang, D.R. Baykusheva, P.M. Kraus, H.J. Wörner, N. Rohringer, Physical Review A 91 (2015).","chicago":"Zhang, Song Bin, Denitsa Rangelova Baykusheva, Peter M. Kraus, Hans Jakob Wörner, and Nina Rohringer. “Theoretical Study of Molecular Electronic and Rotational Coherences by High-Order-Harmonic Generation.” Physical Review A. American Physical Society, 2015. https://doi.org/10.1103/physreva.91.023421."},"article_type":"original","date_published":"2015-02-19T00:00:00Z","scopus_import":"1","keyword":["Atomic and Molecular Physics","and Optics"],"day":"19","article_processing_charge":"No"},{"volume":6,"date_updated":"2023-08-22T08:52:56Z","date_created":"2023-08-10T06:38:01Z","author":[{"full_name":"Kraus, P. M.","last_name":"Kraus","first_name":"P. M."},{"full_name":"Tolstikhin, O. I.","last_name":"Tolstikhin","first_name":"O. I."},{"full_name":"Baykusheva, Denitsa Rangelova","id":"71b4d059-2a03-11ee-914d-dfa3beed6530","first_name":"Denitsa Rangelova","last_name":"Baykusheva"},{"full_name":"Rupenyan, A.","last_name":"Rupenyan","first_name":"A."},{"last_name":"Schneider","first_name":"J.","full_name":"Schneider, J."},{"full_name":"Bisgaard, C. Z.","first_name":"C. Z.","last_name":"Bisgaard"},{"full_name":"Morishita, T.","last_name":"Morishita","first_name":"T."},{"first_name":"F.","last_name":"Jensen","full_name":"Jensen, F."},{"full_name":"Madsen, L. B.","first_name":"L. B.","last_name":"Madsen"},{"full_name":"Wörner, H. J.","last_name":"Wörner","first_name":"H. J."}],"publisher":"Springer Nature","publication_status":"published","pmid":1,"year":"2015","extern":"1","article_number":"7039","language":[{"iso":"eng"}],"doi":"10.1038/ncomms8039","quality_controlled":"1","external_id":{"pmid":["25940229"]},"oa":1,"main_file_link":[{"open_access":"1","url":"https://doi.org/10.1038/ncomms8039"}],"publication_identifier":{"eissn":["2041-1723"]},"month":"05","oa_version":"Published Version","intvolume":" 6","status":"public","title":"Observation of laser-induced electronic structure in oriented polyatomic molecules","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"14016","abstract":[{"lang":"eng","text":"All attosecond time-resolved measurements have so far relied on the use of intense near-infrared laser pulses. In particular, attosecond streaking, laser-induced electron diffraction and high-harmonic generation all make use of non-perturbative light–matter interactions. Remarkably, the effect of the strong laser field on the studied sample has often been neglected in previous studies. Here we use high-harmonic spectroscopy to measure laser-induced modifications of the electronic structure of molecules. We study high-harmonic spectra of spatially oriented CH3F and CH3Br as generic examples of polar polyatomic molecules. We accurately measure intensity ratios of even and odd-harmonic orders, and of the emission from aligned and unaligned molecules. We show that these robust observables reveal a substantial modification of the molecular electronic structure by the external laser field. Our insights offer new challenges and opportunities for a range of emerging strong-field attosecond spectroscopies."}],"type":"journal_article","date_published":"2015-05-05T00:00:00Z","article_type":"original","citation":{"mla":"Kraus, P. M., et al. “Observation of Laser-Induced Electronic Structure in Oriented Polyatomic Molecules.” Nature Communications, vol. 6, 7039, Springer Nature, 2015, doi:10.1038/ncomms8039.","short":"P.M. Kraus, O.I. Tolstikhin, D.R. Baykusheva, A. Rupenyan, J. Schneider, C.Z. Bisgaard, T. Morishita, F. Jensen, L.B. Madsen, H.J. Wörner, Nature Communications 6 (2015).","chicago":"Kraus, P. M., O. I. Tolstikhin, Denitsa Rangelova Baykusheva, A. Rupenyan, J. Schneider, C. Z. Bisgaard, T. Morishita, F. Jensen, L. B. Madsen, and H. J. Wörner. “Observation of Laser-Induced Electronic Structure in Oriented Polyatomic Molecules.” Nature Communications. Springer Nature, 2015. https://doi.org/10.1038/ncomms8039.","ama":"Kraus PM, Tolstikhin OI, Baykusheva DR, et al. Observation of laser-induced electronic structure in oriented polyatomic molecules. Nature Communications. 2015;6. doi:10.1038/ncomms8039","ista":"Kraus PM, Tolstikhin OI, Baykusheva DR, Rupenyan A, Schneider J, Bisgaard CZ, Morishita T, Jensen F, Madsen LB, Wörner HJ. 2015. Observation of laser-induced electronic structure in oriented polyatomic molecules. Nature Communications. 6, 7039.","ieee":"P. M. Kraus et al., “Observation of laser-induced electronic structure in oriented polyatomic molecules,” Nature Communications, vol. 6. Springer Nature, 2015.","apa":"Kraus, P. M., Tolstikhin, O. I., Baykusheva, D. R., Rupenyan, A., Schneider, J., Bisgaard, C. Z., … Wörner, H. J. (2015). Observation of laser-induced electronic structure in oriented polyatomic molecules. Nature Communications. Springer Nature. https://doi.org/10.1038/ncomms8039"},"publication":"Nature Communications","article_processing_charge":"No","day":"05","keyword":["General Physics and Astronomy","General Biochemistry","Genetics and Molecular Biology","General Chemistry","Multidisciplinary"],"scopus_import":"1"}]