--- _id: '11794' abstract: - lang: eng text: We study individual rational, Pareto optimal, and incentive compatible mechanisms for auctions with heterogeneous items and budget limits. For multi-dimensional valuations we show that there can be no deterministic mechanism with these properties for divisible items. We use this to show that there can also be no randomized mechanism that achieves this for either divisible or indivisible items. For single-dimensional valuations we show that there can be no deterministic mechanism with these properties for indivisible items, but that there is a randomized mechanism that achieves this for either divisible or indivisible items. The impossibility results hold for public budgets, while the mechanism allows private budgets, which is in both cases the harder variant to show. While all positive results are polynomial-time algorithms, all negative results hold independent of complexity considerations. alternative_title: - LNCS article_processing_charge: No author: - first_name: Paul full_name: Dütting, Paul last_name: Dütting - first_name: Monika H full_name: Henzinger, Monika H id: 540c9bbd-f2de-11ec-812d-d04a5be85630 last_name: Henzinger orcid: 0000-0002-5008-6530 - first_name: Martin full_name: Starnberger, Martin last_name: Starnberger citation: ama: 'Dütting P, Henzinger MH, Starnberger M. Auctions with heterogeneous items and budget limits. In: 8th International Workshop on Internet and Network Economics. Vol 7695. Springer Nature; 2012:44–57. doi:10.1007/978-3-642-35311-6_4' apa: 'Dütting, P., Henzinger, M. H., & Starnberger, M. (2012). Auctions with heterogeneous items and budget limits. In 8th International Workshop on Internet and Network Economics (Vol. 7695, pp. 44–57). Liverpool, United Kingdom: Springer Nature. https://doi.org/10.1007/978-3-642-35311-6_4' chicago: Dütting, Paul, Monika H Henzinger, and Martin Starnberger. “Auctions with Heterogeneous Items and Budget Limits.” In 8th International Workshop on Internet and Network Economics, 7695:44–57. Springer Nature, 2012. https://doi.org/10.1007/978-3-642-35311-6_4. ieee: P. Dütting, M. H. Henzinger, and M. Starnberger, “Auctions with heterogeneous items and budget limits,” in 8th International Workshop on Internet and Network Economics, Liverpool, United Kingdom, 2012, vol. 7695, pp. 44–57. ista: 'Dütting P, Henzinger MH, Starnberger M. 2012. Auctions with heterogeneous items and budget limits. 8th International Workshop on Internet and Network Economics. WINE: International Conference on Web and Internet Economics, LNCS, vol. 7695, 44–57.' mla: Dütting, Paul, et al. “Auctions with Heterogeneous Items and Budget Limits.” 8th International Workshop on Internet and Network Economics, vol. 7695, Springer Nature, 2012, pp. 44–57, doi:10.1007/978-3-642-35311-6_4. short: P. Dütting, M.H. Henzinger, M. Starnberger, in:, 8th International Workshop on Internet and Network Economics, Springer Nature, 2012, pp. 44–57. conference: end_date: 2012-12-14 location: Liverpool, United Kingdom name: 'WINE: International Conference on Web and Internet Economics' start_date: 2012-12-11 date_created: 2022-08-11T11:32:25Z date_published: 2012-12-01T00:00:00Z date_updated: 2023-02-21T16:28:29Z day: '01' doi: 10.1007/978-3-642-35311-6_4 extern: '1' external_id: arxiv: - '1209.6448' intvolume: ' 7695' language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/1209.6448 month: '12' oa: 1 oa_version: Preprint page: 44–57 publication: 8th International Workshop on Internet and Network Economics publication_identifier: isbn: - '9783642353109' issn: - 1611-3349 publication_status: published publisher: Springer Nature quality_controlled: '1' related_material: record: - id: '11794' relation: later_version status: public scopus_import: '1' status: public title: Auctions with heterogeneous items and budget limits type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 7695 year: '2012' ... --- _id: '11795' abstract: - lang: eng text: "We study multiple keyword sponsored search auctions with budgets. Each keyword has multiple ad slots with a click-through rate. The bidders have additive valuations, which are linear in the click-through rates, and budgets, which are restricting their overall payments. Additionally, the number of slots per keyword assigned to a bidder is bounded.\r\n\r\nWe show the following results: (1) We give the first mechanism for multiple keywords, where click-through rates differ among slots. Our mechanism is incentive compatible in expectation, individually rational in expectation, and Pareto optimal. (2) We study the combinatorial setting, where each bidder is only interested in a subset of the keywords. We give an incentive compatible, individually rational, Pareto optimal, and deterministic mechanism for identical click-through rates. (3) We give an impossibility result for incentive compatible, individually rational, Pareto optimal, and deterministic mechanisms for bidders with diminishing marginal valuations." alternative_title: - LNCS article_processing_charge: No author: - first_name: Riccardo full_name: Colini-Baldeschi, Riccardo last_name: Colini-Baldeschi - first_name: Monika H full_name: Henzinger, Monika H id: 540c9bbd-f2de-11ec-812d-d04a5be85630 last_name: Henzinger orcid: 0000-0002-5008-6530 - first_name: Stefano full_name: Leonardi, Stefano last_name: Leonardi - first_name: Martin full_name: Starnberger, Martin last_name: Starnberger citation: ama: 'Colini-Baldeschi R, Henzinger MH, Leonardi S, Starnberger M. On multiple keyword sponsored search auctions with budgets. In: 39th International Colloquium on Automata, Languages, and Programming. Vol 7392. Springer Nature; 2012:1–12. doi:10.1007/978-3-642-31585-5_1' apa: 'Colini-Baldeschi, R., Henzinger, M. H., Leonardi, S., & Starnberger, M. (2012). On multiple keyword sponsored search auctions with budgets. In 39th International Colloquium on Automata, Languages, and Programming (Vol. 7392, pp. 1–12). Warwick, United Kingdom: Springer Nature. https://doi.org/10.1007/978-3-642-31585-5_1' chicago: Colini-Baldeschi, Riccardo, Monika H Henzinger, Stefano Leonardi, and Martin Starnberger. “On Multiple Keyword Sponsored Search Auctions with Budgets.” In 39th International Colloquium on Automata, Languages, and Programming, 7392:1–12. Springer Nature, 2012. https://doi.org/10.1007/978-3-642-31585-5_1. ieee: R. Colini-Baldeschi, M. H. Henzinger, S. Leonardi, and M. Starnberger, “On multiple keyword sponsored search auctions with budgets,” in 39th International Colloquium on Automata, Languages, and Programming, Warwick, United Kingdom, 2012, vol. 7392, pp. 1–12. ista: 'Colini-Baldeschi R, Henzinger MH, Leonardi S, Starnberger M. 2012. On multiple keyword sponsored search auctions with budgets. 39th International Colloquium on Automata, Languages, and Programming. ICALP: International Colloquium on Automata, Languages, and Programming, LNCS, vol. 7392, 1–12.' mla: Colini-Baldeschi, Riccardo, et al. “On Multiple Keyword Sponsored Search Auctions with Budgets.” 39th International Colloquium on Automata, Languages, and Programming, vol. 7392, Springer Nature, 2012, pp. 1–12, doi:10.1007/978-3-642-31585-5_1. short: R. Colini-Baldeschi, M.H. Henzinger, S. Leonardi, M. Starnberger, in:, 39th International Colloquium on Automata, Languages, and Programming, Springer Nature, 2012, pp. 1–12. conference: end_date: 2012-07-13 location: Warwick, United Kingdom name: 'ICALP: International Colloquium on Automata, Languages, and Programming' start_date: 2012-07-09 date_created: 2022-08-11T11:46:51Z date_published: 2012-07-01T00:00:00Z date_updated: 2023-02-21T16:28:31Z day: '01' doi: 10.1007/978-3-642-31585-5_1 extern: '1' intvolume: ' 7392' language: - iso: eng month: '07' oa_version: None page: 1–12 publication: 39th International Colloquium on Automata, Languages, and Programming publication_identifier: isbn: - '9783642315848' issn: - 0302-9743 publication_status: published publisher: Springer Nature quality_controlled: '1' related_material: record: - id: '11795' relation: later_version status: public scopus_import: '1' status: public title: On multiple keyword sponsored search auctions with budgets type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 7392 year: '2012' ... --- _id: '11964' abstract: - lang: eng text: A detailed investigation on the direct arylation of benzene with aryl bromides by using first-row transition metals under high-temperature/high-pressure (high-T/p) conditions is described. By employing a parallel reactor platform for rapid reaction screening and discovery at elevated temperatures, various metal/ligand/base combinations were evaluated for their ability to enable biaryl formation through C-H activation. The combination of cobalt(III) acetylacetonate and lithium bis(trimethylsilyl)amide was subjected to further process intensification at 200 °C (15 bar), allowing a significant reduction of the catalyst/base loading and a dramatic increase in catalytic efficiency (turnover frequency) by a factor of 1000 compared to traditional protocols. The high-throughput screening additionally identified novel nickel- and copper-based metal/ligand combinations that favored an amination pathway competing with C-H activation, with the addition of ligands, such as 1,10-phenanthroline, having a profound influence on the selectivity. In addition to metal-based catalysts, high-T/p process windows were also successfully applied to transition-metal-free systems, utilizing 1,10-phenanthroline as organocatalyst. article_processing_charge: No article_type: original author: - first_name: Bartholomäus full_name: Pieber, Bartholomäus id: 93e5e5b2-0da6-11ed-8a41-af589a024726 last_name: Pieber orcid: 0000-0001-8689-388X - first_name: David full_name: Cantillo, David last_name: Cantillo - first_name: C. Oliver full_name: Kappe, C. Oliver last_name: Kappe citation: ama: 'Pieber B, Cantillo D, Kappe CO. Direct arylation of benzene with aryl bromides using high‐temperature/high‐pressure process windows: Expanding the scope of C-H activation chemistry. Chemistry – A European Journal. 2012;18(16):5047-5055. doi:10.1002/chem.201103748' apa: 'Pieber, B., Cantillo, D., & Kappe, C. O. (2012). Direct arylation of benzene with aryl bromides using high‐temperature/high‐pressure process windows: Expanding the scope of C-H activation chemistry. Chemistry – A European Journal. Wiley. https://doi.org/10.1002/chem.201103748' chicago: 'Pieber, Bartholomäus, David Cantillo, and C. Oliver Kappe. “Direct Arylation of Benzene with Aryl Bromides Using High‐temperature/High‐pressure Process Windows: Expanding the Scope of C-H Activation Chemistry.” Chemistry – A European Journal. Wiley, 2012. https://doi.org/10.1002/chem.201103748.' ieee: 'B. Pieber, D. Cantillo, and C. O. Kappe, “Direct arylation of benzene with aryl bromides using high‐temperature/high‐pressure process windows: Expanding the scope of C-H activation chemistry,” Chemistry – A European Journal, vol. 18, no. 16. Wiley, pp. 5047–5055, 2012.' ista: 'Pieber B, Cantillo D, Kappe CO. 2012. Direct arylation of benzene with aryl bromides using high‐temperature/high‐pressure process windows: Expanding the scope of C-H activation chemistry. Chemistry – A European Journal. 18(16), 5047–5055.' mla: 'Pieber, Bartholomäus, et al. “Direct Arylation of Benzene with Aryl Bromides Using High‐temperature/High‐pressure Process Windows: Expanding the Scope of C-H Activation Chemistry.” Chemistry – A European Journal, vol. 18, no. 16, Wiley, 2012, pp. 5047–55, doi:10.1002/chem.201103748.' short: B. Pieber, D. Cantillo, C.O. Kappe, Chemistry – A European Journal 18 (2012) 5047–5055. date_created: 2022-08-24T12:48:28Z date_published: 2012-04-16T00:00:00Z date_updated: 2023-02-21T10:09:35Z day: '16' doi: 10.1002/chem.201103748 extern: '1' external_id: pmid: - '22396386' intvolume: ' 18' issue: '16' language: - iso: eng month: '04' oa_version: None page: 5047-5055 pmid: 1 publication: Chemistry – A European Journal publication_identifier: eissn: - 1521-3765 issn: - 0947-6539 publication_status: published publisher: Wiley quality_controlled: '1' scopus_import: '1' status: public title: 'Direct arylation of benzene with aryl bromides using high‐temperature/high‐pressure process windows: Expanding the scope of C-H activation chemistry' type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 18 year: '2012' ... --- _id: '11963' abstract: - lang: eng text: 'Peroxides and ethers in flow: 2-Carbonyl-substituted phenols and β-ketoesters react safely with ethers in a microreactor environment using a copper catalyst and an organic peroxide (TBHP). This protocol results in unsymmetrical acetal scaffolds not easily available otherwise (see scheme).' article_processing_charge: No article_type: letter_note author: - first_name: G. Sathish full_name: Kumar, G. Sathish last_name: Kumar - first_name: Bartholomäus full_name: Pieber, Bartholomäus id: 93e5e5b2-0da6-11ed-8a41-af589a024726 last_name: Pieber orcid: 0000-0001-8689-388X - first_name: K. Rajender full_name: Reddy, K. Rajender last_name: Reddy - first_name: C. Oliver full_name: Kappe, C. Oliver last_name: Kappe citation: ama: Kumar GS, Pieber B, Reddy KR, Kappe CO. Copper-catalyzed formation of C-O bonds by direct α-C-H bond activation of ethers using stoichiometric amounts of peroxide in batch and continuous-flow formats. Chemistry - A European Journal. 2012;18(20):6124-6128. doi:10.1002/chem.201200815 apa: Kumar, G. S., Pieber, B., Reddy, K. R., & Kappe, C. O. (2012). Copper-catalyzed formation of C-O bonds by direct α-C-H bond activation of ethers using stoichiometric amounts of peroxide in batch and continuous-flow formats. Chemistry - A European Journal. Wiley. https://doi.org/10.1002/chem.201200815 chicago: Kumar, G. Sathish, Bartholomäus Pieber, K. Rajender Reddy, and C. Oliver Kappe. “Copper-Catalyzed Formation of C-O Bonds by Direct α-C-H Bond Activation of Ethers Using Stoichiometric Amounts of Peroxide in Batch and Continuous-Flow Formats.” Chemistry - A European Journal. Wiley, 2012. https://doi.org/10.1002/chem.201200815. ieee: G. S. Kumar, B. Pieber, K. R. Reddy, and C. O. Kappe, “Copper-catalyzed formation of C-O bonds by direct α-C-H bond activation of ethers using stoichiometric amounts of peroxide in batch and continuous-flow formats,” Chemistry - A European Journal, vol. 18, no. 20. Wiley, pp. 6124–6128, 2012. ista: Kumar GS, Pieber B, Reddy KR, Kappe CO. 2012. Copper-catalyzed formation of C-O bonds by direct α-C-H bond activation of ethers using stoichiometric amounts of peroxide in batch and continuous-flow formats. Chemistry - A European Journal. 18(20), 6124–6128. mla: Kumar, G. Sathish, et al. “Copper-Catalyzed Formation of C-O Bonds by Direct α-C-H Bond Activation of Ethers Using Stoichiometric Amounts of Peroxide in Batch and Continuous-Flow Formats.” Chemistry - A European Journal, vol. 18, no. 20, Wiley, 2012, pp. 6124–28, doi:10.1002/chem.201200815. short: G.S. Kumar, B. Pieber, K.R. Reddy, C.O. Kappe, Chemistry - A European Journal 18 (2012) 6124–6128. date_created: 2022-08-24T12:33:05Z date_published: 2012-05-14T00:00:00Z date_updated: 2023-02-21T10:09:33Z day: '14' doi: 10.1002/chem.201200815 extern: '1' external_id: pmid: - '22492535' intvolume: ' 18' issue: '20' language: - iso: eng month: '05' oa_version: None page: 6124-6128 pmid: 1 publication: Chemistry - A European Journal publication_identifier: eissn: - 1521-3765 issn: - 0947-6539 publication_status: published publisher: Wiley quality_controlled: '1' scopus_import: '1' status: public title: Copper-catalyzed formation of C-O bonds by direct α-C-H bond activation of ethers using stoichiometric amounts of peroxide in batch and continuous-flow formats type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 18 year: '2012' ... --- _id: '12644' abstract: - lang: eng text: In the Dry Andes of central Chile, summer water resources originate mostly from snowmelt and ice melt. We use the physically based, spatially distributed hydrological model TOPKAPI to study the exchange between glaciers and climate in the upper Aconcagua River Basin during the summer season and identify the model parameters that are robust and transferable and those that are more dependent on calibration. TOPKAPI has recently been adapted to incorporate an enhanced temperature index approach for snow and ice melting. We suggest a calibration procedure that allows calibration of parameters in three steps by separating parameters governing distinct processes. We evaluate the parameters' transferability in time and in space by applying the model at two spatial scales. TOPKAPI's ability to simulate the relevant processes is tested against meteorological, ablation, and glacier runoff data measured on Juncal Norte Glacier during two glacier ablation seasons. The model was applied successfully to the climatic setting of the Dry Andes once its parameters were recalibrated. We found a clear distinction between parameters that are stable in time and those that need recalibration. The parameters of the melt model are transferable from one season to the other, while the parameters governing the extrapolation of meteorological input data and the routing of glacier meltwater need recalibration from one season to the other. Sensitivity analysis revealed that the model is most sensitive to the temperature lapse rate governing the extrapolation of air temperature from point measurements to the glacier scale and to the melt parameter that multiplies the shortwave radiation balance. article_number: W03509 article_processing_charge: No article_type: original author: - first_name: S. full_name: Ragettli, S. last_name: Ragettli - first_name: Francesca full_name: Pellicciotti, Francesca id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70 last_name: Pellicciotti citation: ama: 'Ragettli S, Pellicciotti F. Calibration of a physically based, spatially distributed hydrological model in a glacierized basin: On the use of knowledge from glaciometeorological processes to constrain model parameters. Water Resources Research. 2012;48(3). doi:10.1029/2011wr010559' apa: 'Ragettli, S., & Pellicciotti, F. (2012). Calibration of a physically based, spatially distributed hydrological model in a glacierized basin: On the use of knowledge from glaciometeorological processes to constrain model parameters. Water Resources Research. American Geophysical Union. https://doi.org/10.1029/2011wr010559' chicago: 'Ragettli, S., and Francesca Pellicciotti. “Calibration of a Physically Based, Spatially Distributed Hydrological Model in a Glacierized Basin: On the Use of Knowledge from Glaciometeorological Processes to Constrain Model Parameters.” Water Resources Research. American Geophysical Union, 2012. https://doi.org/10.1029/2011wr010559.' ieee: 'S. Ragettli and F. Pellicciotti, “Calibration of a physically based, spatially distributed hydrological model in a glacierized basin: On the use of knowledge from glaciometeorological processes to constrain model parameters,” Water Resources Research, vol. 48, no. 3. American Geophysical Union, 2012.' ista: 'Ragettli S, Pellicciotti F. 2012. Calibration of a physically based, spatially distributed hydrological model in a glacierized basin: On the use of knowledge from glaciometeorological processes to constrain model parameters. Water Resources Research. 48(3), W03509.' mla: 'Ragettli, S., and Francesca Pellicciotti. “Calibration of a Physically Based, Spatially Distributed Hydrological Model in a Glacierized Basin: On the Use of Knowledge from Glaciometeorological Processes to Constrain Model Parameters.” Water Resources Research, vol. 48, no. 3, W03509, American Geophysical Union, 2012, doi:10.1029/2011wr010559.' short: S. Ragettli, F. Pellicciotti, Water Resources Research 48 (2012). date_created: 2023-02-20T08:17:39Z date_published: 2012-03-01T00:00:00Z date_updated: 2023-02-21T09:38:36Z day: '01' doi: 10.1029/2011wr010559 extern: '1' intvolume: ' 48' issue: '3' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1029/2011WR010559 month: '03' oa: 1 oa_version: Published Version publication: Water Resources Research publication_identifier: issn: - 0043-1397 publication_status: published publisher: American Geophysical Union quality_controlled: '1' scopus_import: '1' status: public title: 'Calibration of a physically based, spatially distributed hydrological model in a glacierized basin: On the use of knowledge from glaciometeorological processes to constrain model parameters' type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 48 year: '2012' ... --- _id: '12646' abstract: - lang: eng text: Assessment of water resources from remote mountainous catchments plays a crucial role for the development of rural areas in or in the vicinity of mountain ranges. The scarcity of data, however, prevents the application of standard approaches that are based on data-driven models. The Hindu Kush–Karakoram–Himalaya mountain range is a crucial area in terms of water resources, but our understanding of the response of its high-elevation catchments to a changing climate is hindered by lack of hydro-meteorological and cryospheric data. Hydrological modeling is challenging here because internal inconsistencies—such as an underestimation of precipitation input that can be compensated for by an overestimation of meltwater—might be hidden due to the complexity of feedback mechanisms that govern melt and runoff generation in such basins. Data scarcity adds to this difficulty by preventing the application of systematic calibration procedures that would allow identification of the parameter set that could guarantee internal consistency in the simulation of the single hydrological components. In this work, we use simulations from the Hunza River Basin in the Karakoram region obtained with the hydrological model TOPKAPI to quantify the predictive power of discharge and snow-cover data sets, as well as the combination of both. We also show that short-term measurements of meteorological variables such as radiative fluxes, wind speed, relative humidity, and air temperature from glacio-meteorological experiments are crucial for a correct parameterization of surface melt processes. They enable detailed simulations of the energy fluxes governing glacier–atmosphere interaction and the resulting ablation through energy-balance modeling. These simulations are used to derive calibrated parameters for the simplified snow and glacier routines in TOPKAPI. We demonstrate that such parameters are stable in space and time in similar climatic regions, thus reducing the number of parameters requiring calibration. article_processing_charge: No article_type: original author: - first_name: Francesca full_name: Pellicciotti, Francesca id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70 last_name: Pellicciotti - first_name: Cyrill full_name: Buergi, Cyrill last_name: Buergi - first_name: Walter Willem full_name: Immerzeel, Walter Willem last_name: Immerzeel - first_name: Markus full_name: Konz, Markus last_name: Konz - first_name: Arun B. full_name: Shrestha, Arun B. last_name: Shrestha citation: ama: 'Pellicciotti F, Buergi C, Immerzeel WW, Konz M, Shrestha AB. Challenges and uncertainties in hydrological modeling of remote Hindu Kush–Karakoram–Himalayan (HKH) basins: Suggestions for calibration strategies. Mountain Research and Development. 2012;32(1):39-50. doi:10.1659/mrd-journal-d-11-00092.1' apa: 'Pellicciotti, F., Buergi, C., Immerzeel, W. W., Konz, M., & Shrestha, A. B. (2012). Challenges and uncertainties in hydrological modeling of remote Hindu Kush–Karakoram–Himalayan (HKH) basins: Suggestions for calibration strategies. Mountain Research and Development. International Mountain Society. https://doi.org/10.1659/mrd-journal-d-11-00092.1' chicago: 'Pellicciotti, Francesca, Cyrill Buergi, Walter Willem Immerzeel, Markus Konz, and Arun B. Shrestha. “Challenges and Uncertainties in Hydrological Modeling of Remote Hindu Kush–Karakoram–Himalayan (HKH) Basins: Suggestions for Calibration Strategies.” Mountain Research and Development. International Mountain Society, 2012. https://doi.org/10.1659/mrd-journal-d-11-00092.1.' ieee: 'F. Pellicciotti, C. Buergi, W. W. Immerzeel, M. Konz, and A. B. Shrestha, “Challenges and uncertainties in hydrological modeling of remote Hindu Kush–Karakoram–Himalayan (HKH) basins: Suggestions for calibration strategies,” Mountain Research and Development, vol. 32, no. 1. International Mountain Society, pp. 39–50, 2012.' ista: 'Pellicciotti F, Buergi C, Immerzeel WW, Konz M, Shrestha AB. 2012. Challenges and uncertainties in hydrological modeling of remote Hindu Kush–Karakoram–Himalayan (HKH) basins: Suggestions for calibration strategies. Mountain Research and Development. 32(1), 39–50.' mla: 'Pellicciotti, Francesca, et al. “Challenges and Uncertainties in Hydrological Modeling of Remote Hindu Kush–Karakoram–Himalayan (HKH) Basins: Suggestions for Calibration Strategies.” Mountain Research and Development, vol. 32, no. 1, International Mountain Society, 2012, pp. 39–50, doi:10.1659/mrd-journal-d-11-00092.1.' short: F. Pellicciotti, C. Buergi, W.W. Immerzeel, M. Konz, A.B. Shrestha, Mountain Research and Development 32 (2012) 39–50. date_created: 2023-02-20T08:17:47Z date_published: 2012-02-01T00:00:00Z date_updated: 2023-02-21T09:31:54Z day: '01' doi: 10.1659/mrd-journal-d-11-00092.1 extern: '1' intvolume: ' 32' issue: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1659/MRD-JOURNAL-D-11-00092.1 month: '02' oa: 1 oa_version: Published Version page: 39-50 publication: Mountain Research and Development publication_identifier: eissn: - 1994-7151 issn: - 0276-4741 publication_status: published publisher: International Mountain Society quality_controlled: '1' scopus_import: '1' status: public title: 'Challenges and uncertainties in hydrological modeling of remote Hindu Kush–Karakoram–Himalayan (HKH) basins: Suggestions for calibration strategies' type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 32 year: '2012' ... --- _id: '12647' abstract: - lang: eng text: Accurate quantification of the spatial distribution of precipitation in mountain regions is crucial for assessments of water resources and for the understanding of high-altitude hydrology, yet it is one of the largest unknowns due to the lack of high-altitude observations. The Hunza basin in Pakistan contains very large glacier systems, which, given the melt, cannot persist unless precipitation (snow input) is much higher than what is observed at the meteorological stations, mostly located in mountain valleys. Several studies, therefore, suggest strong positive vertical precipitation lapse rates; in the present study, we quantify this lapse rate by using glaciers as a proxy. We assume a neutral mass balance for the glaciers for the period from 2001 to 2003, and we inversely model the precipitation lapse by balancing the total accumulation in the catchment area and the ablation over the glacier area for the 50 largest glacier systems in the Hunza basin in the Karakoram. Our results reveal a vertical precipitation lapse rate that equals 0.21 ± 0.12% m−1, with a maximum precipitation at an elevation of 5500 masl. We showed that the total annual basin precipitation (828 mm) is 260% higher than what is estimated based on interpolated observations (319 mm); this has major consequences for hydrological modeling and water resource assessments in general. Our results were validated by using previously published studies on individual glaciers as well as the water balance of the Hunza basin. The approach is more widely applicable in mountain ranges where precipitation measurements at high altitude are lacking. article_processing_charge: No article_type: original author: - first_name: Walter Willem full_name: Immerzeel, Walter Willem last_name: Immerzeel - first_name: Francesca full_name: Pellicciotti, Francesca id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70 last_name: Pellicciotti - first_name: Arun B. full_name: Shrestha, Arun B. last_name: Shrestha citation: ama: Immerzeel WW, Pellicciotti F, Shrestha AB. Glaciers as a proxy to quantify the spatial distribution of precipitation in the Hunza basin. Mountain Research and Development. 2012;32(1):30-38. doi:10.1659/mrd-journal-d-11-00097.1 apa: Immerzeel, W. W., Pellicciotti, F., & Shrestha, A. B. (2012). Glaciers as a proxy to quantify the spatial distribution of precipitation in the Hunza basin. Mountain Research and Development. International Mountain Society. https://doi.org/10.1659/mrd-journal-d-11-00097.1 chicago: Immerzeel, Walter Willem, Francesca Pellicciotti, and Arun B. Shrestha. “Glaciers as a Proxy to Quantify the Spatial Distribution of Precipitation in the Hunza Basin.” Mountain Research and Development. International Mountain Society, 2012. https://doi.org/10.1659/mrd-journal-d-11-00097.1. ieee: W. W. Immerzeel, F. Pellicciotti, and A. B. Shrestha, “Glaciers as a proxy to quantify the spatial distribution of precipitation in the Hunza basin,” Mountain Research and Development, vol. 32, no. 1. International Mountain Society, pp. 30–38, 2012. ista: Immerzeel WW, Pellicciotti F, Shrestha AB. 2012. Glaciers as a proxy to quantify the spatial distribution of precipitation in the Hunza basin. Mountain Research and Development. 32(1), 30–38. mla: Immerzeel, Walter Willem, et al. “Glaciers as a Proxy to Quantify the Spatial Distribution of Precipitation in the Hunza Basin.” Mountain Research and Development, vol. 32, no. 1, International Mountain Society, 2012, pp. 30–38, doi:10.1659/mrd-journal-d-11-00097.1. short: W.W. Immerzeel, F. Pellicciotti, A.B. Shrestha, Mountain Research and Development 32 (2012) 30–38. date_created: 2023-02-20T08:17:52Z date_published: 2012-02-01T00:00:00Z date_updated: 2023-02-21T08:56:29Z day: '01' doi: 10.1659/mrd-journal-d-11-00097.1 extern: '1' intvolume: ' 32' issue: '1' keyword: - General Environmental Science - Development - Environmental Chemistry language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1659/MRD-JOURNAL-D-11-00097.1 month: '02' oa: 1 oa_version: Published Version page: 30-38 publication: Mountain Research and Development publication_identifier: eissn: - 1994-7151 issn: - 0276-4741 publication_status: published publisher: International Mountain Society quality_controlled: '1' scopus_import: '1' status: public title: Glaciers as a proxy to quantify the spatial distribution of precipitation in the Hunza basin type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 32 year: '2012' ... --- _id: '12648' abstract: - lang: eng text: Distributed glacier melt models generally assume that the glacier surface consists of bare exposed ice and snow. In reality, many glaciers are wholly or partially covered in layers of debris that tend to suppress ablation rates. In this paper, an existing physically based point model for the ablation of debris-covered ice is incorporated in a distributed melt model and applied to Haut Glacier d'Arolla, Switzerland, which has three large patches of debris cover on its surface. The model is based on a 10 m resolution digital elevation model (DEM) of the area; each glacier pixel in the DEM is defined as either bare or debris-covered ice, and may be covered in snow that must be melted off before ice ablation is assumed to occur. Each debris-covered pixel is assigned a debris thickness value using probability distributions based on over 1000 manual thickness measurements. Locally observed meteorological data are used to run energy balance calculations in every pixel, using an approach suitable for snow, bare ice or debris-covered ice as appropriate. The use of the debris model significantly reduces the total ablation in the debris-covered areas, however the precise reduction is sensitive to the temperature extrapolation used in the model distribution because air near the debris surface tends to be slightly warmer than over bare ice. Overall results suggest that the debris patches, which cover 10% of the glacierized area, reduce total runoff from the glacierized part of the basin by up to 7%. article_number: D18105 article_processing_charge: No article_type: original author: - first_name: T. D. full_name: Reid, T. D. last_name: Reid - first_name: M. full_name: Carenzo, M. last_name: Carenzo - first_name: Francesca full_name: Pellicciotti, Francesca id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70 last_name: Pellicciotti - first_name: B. W. full_name: Brock, B. W. last_name: Brock citation: ama: 'Reid TD, Carenzo M, Pellicciotti F, Brock BW. Including debris cover effects in a distributed model of glacier ablation. Journal of Geophysical Research: Atmospheres. 2012;117(D18). doi:10.1029/2012jd017795' apa: 'Reid, T. D., Carenzo, M., Pellicciotti, F., & Brock, B. W. (2012). Including debris cover effects in a distributed model of glacier ablation. Journal of Geophysical Research: Atmospheres. American Geophysical Union. https://doi.org/10.1029/2012jd017795' chicago: 'Reid, T. D., M. Carenzo, Francesca Pellicciotti, and B. W. Brock. “Including Debris Cover Effects in a Distributed Model of Glacier Ablation.” Journal of Geophysical Research: Atmospheres. American Geophysical Union, 2012. https://doi.org/10.1029/2012jd017795.' ieee: 'T. D. Reid, M. Carenzo, F. Pellicciotti, and B. W. Brock, “Including debris cover effects in a distributed model of glacier ablation,” Journal of Geophysical Research: Atmospheres, vol. 117, no. D18. American Geophysical Union, 2012.' ista: 'Reid TD, Carenzo M, Pellicciotti F, Brock BW. 2012. Including debris cover effects in a distributed model of glacier ablation. Journal of Geophysical Research: Atmospheres. 117(D18), D18105.' mla: 'Reid, T. D., et al. “Including Debris Cover Effects in a Distributed Model of Glacier Ablation.” Journal of Geophysical Research: Atmospheres, vol. 117, no. D18, D18105, American Geophysical Union, 2012, doi:10.1029/2012jd017795.' short: 'T.D. Reid, M. Carenzo, F. Pellicciotti, B.W. Brock, Journal of Geophysical Research: Atmospheres 117 (2012).' date_created: 2023-02-20T08:17:57Z date_published: 2012-09-27T00:00:00Z date_updated: 2023-02-20T10:57:31Z day: '27' doi: 10.1029/2012jd017795 extern: '1' intvolume: ' 117' issue: D18 keyword: - Paleontology - Space and Planetary Science - Earth and Planetary Sciences (miscellaneous) - Atmospheric Science - Earth-Surface Processes - Geochemistry and Petrology - Soil Science - Water Science and Technology - Ecology - Aquatic Science - Forestry - Oceanography - Geophysics language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1029/2012JD017795 month: '09' oa: 1 oa_version: Published Version publication: 'Journal of Geophysical Research: Atmospheres' publication_identifier: issn: - 0148-0227 publication_status: published publisher: American Geophysical Union quality_controlled: '1' scopus_import: '1' status: public title: Including debris cover effects in a distributed model of glacier ablation type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 117 year: '2012' ... --- _id: '1384' abstract: - lang: eng text: 'Software model checking, as an undecidable problem, has three possible outcomes: (1) the program satisfies the specification, (2) the program does not satisfy the specification, and (3) the model checker fails. The third outcome usually manifests itself in a space-out, time-out, or one component of the verification tool giving up; in all of these failing cases, significant computation is performed by the verification tool before the failure, but no result is reported. We propose to reformulate the model-checking problem as follows, in order to have the verification tool report a summary of the performed work even in case of failure: given a program and a specification, the model checker returns a condition Ψ - usually a state predicate - such that the program satisfies the specification under the condition Ψ - that is, as long as the program does not leave the states in which Ψ is satisfied. In our experiments, we investigated as one major application of conditional model checking the sequential combination of model checkers with information passing. We give the condition that one model checker produces, as input to a second conditional model checker, such that the verification problem for the second is restricted to the part of the state space that is not covered by the condition, i.e., the second model checker works on the problems that the first model checker could not solve. Our experiments demonstrate that repeated application of conditional model checkers, passing information from one model checker to the next, can significantly improve the verification results and performance, i.e., we can now verify programs that we could not verify before.' acknowledgement: This research was supported by the Canadian NSERC grant RGPIN 341819-07, the ERC Advanced Grant QUAREM, and the Austrian Science Fund NFN RiSE. article_number: '57' author: - first_name: Dirk full_name: Beyer, Dirk last_name: Beyer - first_name: Thomas A full_name: Henzinger, Thomas A id: 40876CD8-F248-11E8-B48F-1D18A9856A87 last_name: Henzinger orcid: 0000−0002−2985−7724 - first_name: Mehmet full_name: Keremoglu, Mehmet last_name: Keremoglu - first_name: Philipp full_name: Wendler, Philipp last_name: Wendler citation: ama: 'Beyer D, Henzinger TA, Keremoglu M, Wendler P. Conditional model checking: A technique to pass information between verifiers. In: Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering. ACM; 2012. doi:10.1145/2393596.2393664' apa: 'Beyer, D., Henzinger, T. A., Keremoglu, M., & Wendler, P. (2012). Conditional model checking: A technique to pass information between verifiers. In Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering. Cary, NC, USA: ACM. https://doi.org/10.1145/2393596.2393664' chicago: 'Beyer, Dirk, Thomas A Henzinger, Mehmet Keremoglu, and Philipp Wendler. “Conditional Model Checking: A Technique to Pass Information between Verifiers.” In Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering. ACM, 2012. https://doi.org/10.1145/2393596.2393664.' ieee: 'D. Beyer, T. A. Henzinger, M. Keremoglu, and P. Wendler, “Conditional model checking: A technique to pass information between verifiers,” in Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering, Cary, NC, USA, 2012.' ista: 'Beyer D, Henzinger TA, Keremoglu M, Wendler P. 2012. Conditional model checking: A technique to pass information between verifiers. Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering. FSE: Foundations of Software Engineering, 57.' mla: 'Beyer, Dirk, et al. “Conditional Model Checking: A Technique to Pass Information between Verifiers.” Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering, 57, ACM, 2012, doi:10.1145/2393596.2393664.' short: D. Beyer, T.A. Henzinger, M. Keremoglu, P. Wendler, in:, Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering, ACM, 2012. conference: end_date: 2012-11-16 location: Cary, NC, USA name: 'FSE: Foundations of Software Engineering' start_date: 2012-11-11 date_created: 2018-12-11T11:51:42Z date_published: 2012-11-01T00:00:00Z date_updated: 2021-01-12T06:50:18Z day: '01' department: - _id: ToHe doi: 10.1145/2393596.2393664 ec_funded: 1 language: - iso: eng main_file_link: - open_access: '1' url: http://arxiv.org/abs/1109.6926 month: '11' oa: 1 oa_version: Preprint project: - _id: 25EE3708-B435-11E9-9278-68D0E5697425 call_identifier: FP7 grant_number: '267989' name: Quantitative Reactive Modeling - _id: 25832EC2-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: S 11407_N23 name: Rigorous Systems Engineering publication: Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering publication_status: published publisher: ACM publist_id: '5826' quality_controlled: '1' scopus_import: 1 status: public title: 'Conditional model checking: A technique to pass information between verifiers' type: conference user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87 year: '2012' ... --- _id: '1472' abstract: - lang: eng text: For G = GL 2, PGL 2, SL 2 we prove that the perverse filtration associated with the Hitchin map on the rational cohomology of the moduli space of twisted G-Higgs bundles on a compact Riemann surface C agrees with the weight filtration on the rational cohomology of the twisted G character variety of C when the cohomologies are identified via non-Abelian Hodge theory. The proof is accomplished by means of a study of the topology of the Hitchin map over the locus of integral spectral curves. acknowledgement: Mark Andrea A. de Cataldo was partially supported by N.S.A. and N.S.F. Tamás Hausel was supported by a Royal Society University Research Fellowship. Luca Migliorini was partially supported by PRIN 2007 project "Spazi di moduli e teoria di Lie" author: - first_name: Mark full_name: De Cataldo, Mark A last_name: De Cataldo - first_name: Tamas full_name: Tamas Hausel id: 4A0666D8-F248-11E8-B48F-1D18A9856A87 last_name: Hausel - first_name: Luca full_name: Migliorini, Luca last_name: Migliorini citation: ama: 'De Cataldo M, Hausel T, Migliorini L. Topology of hitchin systems and Hodge theory of character varieties: The case A 1. Annals of Mathematics. 2012;175(3):1329-1407. doi:10.4007/annals.2012.175.3.7' apa: 'De Cataldo, M., Hausel, T., & Migliorini, L. (2012). Topology of hitchin systems and Hodge theory of character varieties: The case A 1. Annals of Mathematics. Princeton University Press. https://doi.org/10.4007/annals.2012.175.3.7' chicago: 'De Cataldo, Mark, Tamás Hausel, and Luca Migliorini. “Topology of Hitchin Systems and Hodge Theory of Character Varieties: The Case A 1.” Annals of Mathematics. Princeton University Press, 2012. https://doi.org/10.4007/annals.2012.175.3.7.' ieee: 'M. De Cataldo, T. Hausel, and L. Migliorini, “Topology of hitchin systems and Hodge theory of character varieties: The case A 1,” Annals of Mathematics, vol. 175, no. 3. Princeton University Press, pp. 1329–1407, 2012.' ista: 'De Cataldo M, Hausel T, Migliorini L. 2012. Topology of hitchin systems and Hodge theory of character varieties: The case A 1. Annals of Mathematics. 175(3), 1329–1407.' mla: 'De Cataldo, Mark, et al. “Topology of Hitchin Systems and Hodge Theory of Character Varieties: The Case A 1.” Annals of Mathematics, vol. 175, no. 3, Princeton University Press, 2012, pp. 1329–407, doi:10.4007/annals.2012.175.3.7.' short: M. De Cataldo, T. Hausel, L. Migliorini, Annals of Mathematics 175 (2012) 1329–1407. date_created: 2018-12-11T11:52:13Z date_published: 2012-05-01T00:00:00Z date_updated: 2021-01-12T06:50:59Z day: '01' doi: 10.4007/annals.2012.175.3.7 extern: 1 intvolume: ' 175' issue: '3' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1004.1420 month: '05' oa: 1 page: 1329 - 1407 publication: Annals of Mathematics publication_status: published publisher: Princeton University Press publist_id: '5727' quality_controlled: 0 status: public title: 'Topology of hitchin systems and Hodge theory of character varieties: The case A 1' type: journal_article volume: 175 year: '2012' ... --- _id: '1471' abstract: - lang: eng text: 'Given a possibly reducible and non-reduced spectral cover π: X → C over a smooth projective complex curve C we determine the group of connected components of the Prym variety Prym(X/C). As an immediate application we show that the finite group of n-torsion points of the Jacobian of C acts trivially on the cohomology of the twisted SL n-Higgs moduli space up to the degree which is predicted by topological mirror symmetry. In particular this yields a new proof of a result of Harder-Narasimhan, showing that this finite group acts trivially on the cohomology of the twisted SL n stable bundle moduli space.' author: - first_name: Tamas full_name: Tamas Hausel id: 4A0666D8-F248-11E8-B48F-1D18A9856A87 last_name: Hausel - first_name: Christian full_name: Pauly, Christian last_name: Pauly citation: ama: Hausel T, Pauly C. Prym varieties of spectral covers. Geometry and Topology. 2012;16(3):1609-1638. doi:10.2140/gt.2012.16.1609 apa: Hausel, T., & Pauly, C. (2012). Prym varieties of spectral covers. Geometry and Topology. University of Warwick. https://doi.org/10.2140/gt.2012.16.1609 chicago: Hausel, Tamás, and Christian Pauly. “Prym Varieties of Spectral Covers.” Geometry and Topology. University of Warwick, 2012. https://doi.org/10.2140/gt.2012.16.1609. ieee: T. Hausel and C. Pauly, “Prym varieties of spectral covers,” Geometry and Topology, vol. 16, no. 3. University of Warwick, pp. 1609–1638, 2012. ista: Hausel T, Pauly C. 2012. Prym varieties of spectral covers. Geometry and Topology. 16(3), 1609–1638. mla: Hausel, Tamás, and Christian Pauly. “Prym Varieties of Spectral Covers.” Geometry and Topology, vol. 16, no. 3, University of Warwick, 2012, pp. 1609–38, doi:10.2140/gt.2012.16.1609. short: T. Hausel, C. Pauly, Geometry and Topology 16 (2012) 1609–1638. date_created: 2018-12-11T11:52:13Z date_published: 2012-08-01T00:00:00Z date_updated: 2021-01-12T06:50:58Z day: '01' doi: 10.2140/gt.2012.16.1609 extern: 1 intvolume: ' 16' issue: '3' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1012.4748 month: '08' oa: 1 page: 1609 - 1638 publication: Geometry and Topology publication_status: published publisher: University of Warwick publist_id: '5726' quality_controlled: 0 status: public title: Prym varieties of spectral covers type: journal_article volume: 16 year: '2012' ... --- _id: '171' abstract: - lang: eng text: For given non-zero integers a, b, q we investigate the density of solutions (x, y) ∈ ℤ2 to the binary cubic congruence ax2 + by3 ≡ 0 mod q, and use it to establish the Manin conjecture for a singular del Pezzo surface of degree 2 defined over ℚ. author: - first_name: Timothy D full_name: Timothy Browning id: 35827D50-F248-11E8-B48F-1D18A9856A87 last_name: Browning orcid: 0000-0002-8314-0177 - first_name: Stephan full_name: Baier, Stephan last_name: Baier citation: ama: Browning TD, Baier S. Inhomogeneous cubic congruences and rational points on del Pezzo surfaces. Journal fur die Reine und Angewandte Mathematik. 2012;2013(680):1-65. doi:https://doi.org/10.1515/crelle.2012.039 apa: Browning, T. D., & Baier, S. (2012). Inhomogeneous cubic congruences and rational points on del Pezzo surfaces. Journal Fur Die Reine Und Angewandte Mathematik. Walter de Gruyter. https://doi.org/10.1515/crelle.2012.039 chicago: Browning, Timothy D, and Stephan Baier. “Inhomogeneous Cubic Congruences and Rational Points on Del Pezzo Surfaces.” Journal Fur Die Reine Und Angewandte Mathematik. Walter de Gruyter, 2012. https://doi.org/10.1515/crelle.2012.039. ieee: T. D. Browning and S. Baier, “Inhomogeneous cubic congruences and rational points on del Pezzo surfaces,” Journal fur die Reine und Angewandte Mathematik, vol. 2013, no. 680. Walter de Gruyter, pp. 1–65, 2012. ista: Browning TD, Baier S. 2012. Inhomogeneous cubic congruences and rational points on del Pezzo surfaces. Journal fur die Reine und Angewandte Mathematik. 2013(680), 1–65. mla: Browning, Timothy D., and Stephan Baier. “Inhomogeneous Cubic Congruences and Rational Points on Del Pezzo Surfaces.” Journal Fur Die Reine Und Angewandte Mathematik, vol. 2013, no. 680, Walter de Gruyter, 2012, pp. 1–65, doi:https://doi.org/10.1515/crelle.2012.039. short: T.D. Browning, S. Baier, Journal Fur Die Reine Und Angewandte Mathematik 2013 (2012) 1–65. date_created: 2018-12-11T11:45:00Z date_published: 2012-04-03T00:00:00Z date_updated: 2021-01-12T06:52:41Z day: '03' doi: https://doi.org/10.1515/crelle.2012.039 extern: 1 intvolume: ' 2013' issue: '680' main_file_link: - open_access: '1' url: https://arxiv.org/abs/1011.3434 month: '04' oa: 1 page: 1 - 65 publication: Journal fur die Reine und Angewandte Mathematik publication_status: published publisher: Walter de Gruyter publist_id: '7750' quality_controlled: 0 status: public title: Inhomogeneous cubic congruences and rational points on del Pezzo surfaces type: journal_article volume: 2013 year: '2012' ... --- _id: '1725' abstract: - lang: eng text: The spatial organization of cell fates during development involves the interpretation of morphogen gradients by cellular signaling cascades and transcriptional networks. Recent studies use biophysical models, genetics, and quantitative imaging to unravel how tissue-level morphogen behavior arises from subcellular events. Moreover, data from several systems show that morphogen gradients, downstream signaling, and the activity of cell-intrinsic transcriptional networks change dynamically during pattern formation. Studies from Drosophila and now also vertebrates suggest that transcriptional network dynamics are central to the generation of gene expression patterns. Together, this leads to the view that pattern formation is an emergent behavior that results from the coordination of events occurring across molecular, cellular, and tissue scales. The development of novel approaches to study this complex process remains a challenge. acknowledgement: 'Funding provided by the Medical Research Council (UK). ' author: - first_name: Anna full_name: Anna Kicheva id: 3959A2A0-F248-11E8-B48F-1D18A9856A87 last_name: Kicheva orcid: 0000-0003-4509-4998 - first_name: Michael full_name: Cohen, Michael H last_name: Cohen - first_name: James full_name: Briscoe, James last_name: Briscoe citation: ama: 'Kicheva A, Cohen M, Briscoe J. Developmental pattern formation: Insights from physics and biology. Science. 2012;338(6104):210-212. doi:10.1126/science.1225182' apa: 'Kicheva, A., Cohen, M., & Briscoe, J. (2012). Developmental pattern formation: Insights from physics and biology. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1225182' chicago: 'Kicheva, Anna, Michael Cohen, and James Briscoe. “Developmental Pattern Formation: Insights from Physics and Biology.” Science. American Association for the Advancement of Science, 2012. https://doi.org/10.1126/science.1225182.' ieee: 'A. Kicheva, M. Cohen, and J. Briscoe, “Developmental pattern formation: Insights from physics and biology,” Science, vol. 338, no. 6104. American Association for the Advancement of Science, pp. 210–212, 2012.' ista: 'Kicheva A, Cohen M, Briscoe J. 2012. Developmental pattern formation: Insights from physics and biology. Science. 338(6104), 210–212.' mla: 'Kicheva, Anna, et al. “Developmental Pattern Formation: Insights from Physics and Biology.” Science, vol. 338, no. 6104, American Association for the Advancement of Science, 2012, pp. 210–12, doi:10.1126/science.1225182.' short: A. Kicheva, M. Cohen, J. Briscoe, Science 338 (2012) 210–212. date_created: 2018-12-11T11:53:40Z date_published: 2012-10-12T00:00:00Z date_updated: 2021-01-12T06:52:47Z day: '12' doi: 10.1126/science.1225182 extern: 1 intvolume: ' 338' issue: '6104' month: '10' page: 210 - 212 publication: Science publication_status: published publisher: American Association for the Advancement of Science publist_id: '5404' quality_controlled: 0 status: public title: 'Developmental pattern formation: Insights from physics and biology' type: journal_article volume: 338 year: '2012' ... --- _id: '1757' abstract: - lang: eng text: Self-assembled Ge wires with a height of only 3 unit cells and a length of up to 2 micrometers were grown on Si(001) by means of a catalyst-free method based on molecular beam epitaxy. The wires grow horizontally along either the [100] or the [010] direction. On atomically flat surfaces, they exhibit a highly uniform, triangular cross section. A simple thermodynamic model accounts for the existence of a preferential base width for longitudinal expansion, in quantitative agreement with the experimental findings. Despite the absence of intentional doping, the first transistor-type devices made from single wires show low-resistive electrical contacts and single-hole transport at sub-Kelvin temperatures. In view of their exceptionally small and self-defined cross section, these Ge wires hold promise for the realization of hole systems with exotic properties and provide a new development route for silicon-based nanoelectronics. acknowledgement: We acknowledge the financial support by the DFG SPP1386, P. Chen and D. J. Thurmer for MBE assistance, R. Wacquez for providing the ultrathin SOI wafers, and G. Bauer, Y. Hu, X. Jehl, S. Kiravittaya, C. Klöffel, E. J. H. Lee, F. Liu, D. Loss, and S. Mahapatra for helpful discussions. G. K. acknowledges support from the European commission via a Marie Curie Carrer Integration Grant. S. D. F. acknowledges support from the European Research Council through the starting grant program author: - first_name: Jianjun full_name: Zhang, Jianjun last_name: Zhang - first_name: Georgios full_name: Georgios Katsaros id: 38DB5788-F248-11E8-B48F-1D18A9856A87 last_name: Katsaros - first_name: Francesco full_name: Montalenti, Francesco last_name: Montalenti - first_name: Daniele full_name: Scopece, Daniele last_name: Scopece - first_name: Roman full_name: Rezaev, Roman O last_name: Rezaev - first_name: Christine full_name: Mickel, Christine H last_name: Mickel - first_name: Bernd full_name: Rellinghaus, Bernd last_name: Rellinghaus - first_name: Leo full_name: Miglio, Leo P last_name: Miglio - first_name: Silvano full_name: De Franceschi, Silvano last_name: De Franceschi - first_name: Armando full_name: Rastelli, Armando last_name: Rastelli - first_name: Oliver full_name: Schmidt, Oliver G last_name: Schmidt citation: ama: Zhang J, Katsaros G, Montalenti F, et al. Monolithic growth of ultrathin Ge nanowires on Si(001) . Physical Review Letters. 2012;109(8). doi:10.1103/PhysRevLett.109.085502 apa: Zhang, J., Katsaros, G., Montalenti, F., Scopece, D., Rezaev, R., Mickel, C., … Schmidt, O. (2012). Monolithic growth of ultrathin Ge nanowires on Si(001) . Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.109.085502 chicago: Zhang, Jianjun, Georgios Katsaros, Francesco Montalenti, Daniele Scopece, Roman Rezaev, Christine Mickel, Bernd Rellinghaus, et al. “Monolithic Growth of Ultrathin Ge Nanowires on Si(001) .” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/PhysRevLett.109.085502. ieee: J. Zhang et al., “Monolithic growth of ultrathin Ge nanowires on Si(001) ,” Physical Review Letters, vol. 109, no. 8. American Physical Society, 2012. ista: Zhang J, Katsaros G, Montalenti F, Scopece D, Rezaev R, Mickel C, Rellinghaus B, Miglio L, De Franceschi S, Rastelli A, Schmidt O. 2012. Monolithic growth of ultrathin Ge nanowires on Si(001) . Physical Review Letters. 109(8). mla: Zhang, Jianjun, et al. “Monolithic Growth of Ultrathin Ge Nanowires on Si(001) .” Physical Review Letters, vol. 109, no. 8, American Physical Society, 2012, doi:10.1103/PhysRevLett.109.085502. short: J. Zhang, G. Katsaros, F. Montalenti, D. Scopece, R. Rezaev, C. Mickel, B. Rellinghaus, L. Miglio, S. De Franceschi, A. Rastelli, O. Schmidt, Physical Review Letters 109 (2012). date_created: 2018-12-11T11:53:51Z date_published: 2012-08-23T00:00:00Z date_updated: 2021-01-12T06:53:00Z day: '23' doi: 10.1103/PhysRevLett.109.085502 extern: 1 intvolume: ' 109' issue: '8' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1208.0666 month: '08' oa: 1 publication: Physical Review Letters publication_status: published publisher: American Physical Society publist_id: '5367' quality_controlled: 0 status: public title: 'Monolithic growth of ultrathin Ge nanowires on Si(001) ' type: journal_article volume: 109 year: '2012' ... --- _id: '1758' abstract: - lang: eng text: We studied the low-energy states of spin-1/2 quantum dots defined in InAs/InP nanowires and coupled to aluminum superconducting leads. By varying the superconducting gap Δ with a magnetic field B we investigated the transition from strong coupling Δ≪T K to weak-coupling Δ≫T K, where T K is the Kondo temperature. Below the critical field, we observe a persisting zero-bias Kondo resonance that vanishes only for low B or higher temperatures, leaving the room to more robust subgap structures at bias voltages between Δ and 2Δ. For strong and approximately symmetric tunnel couplings, a Josephson supercurrent is observed in addition to the Kondo peak. We ascribe the coexistence of a Kondo resonance and a superconducting gap to a significant density of intragap quasiparticle states, and the finite-bias subgap structures to tunneling through Shiba states. Our results, supported by numerical calculations, own relevance also in relation to tunnel-spectroscopy experiments aiming at the observation of Majorana fermions in hybrid nanostructures. acknowledgement: This work was supported by the EU Marie Curie program and by the Agence Nationale de la Recherche. R. A. acknowledges support from the Spanish Ministry of Science and Innovation through Grant No. FIS2009-08744 author: - first_name: Eduardo full_name: Lee, Eduardo J last_name: Lee - first_name: Xiaocheng full_name: Jiang, Xiaocheng last_name: Jiang - first_name: Ramón full_name: Aguado, Ramón last_name: Aguado - first_name: Georgios full_name: Georgios Katsaros id: 38DB5788-F248-11E8-B48F-1D18A9856A87 last_name: Katsaros - first_name: Charles full_name: Lieber, Charles M last_name: Lieber - first_name: Silvano full_name: De Franceschi, Silvano last_name: De Franceschi citation: ama: Lee E, Jiang X, Aguado R, Katsaros G, Lieber C, De Franceschi S. Zero-bias anomaly in a nanowire quantum dot coupled to superconductors. Physical Review Letters. 2012;109(18). doi:10.1103/PhysRevLett.109.186802 apa: Lee, E., Jiang, X., Aguado, R., Katsaros, G., Lieber, C., & De Franceschi, S. (2012). Zero-bias anomaly in a nanowire quantum dot coupled to superconductors. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.109.186802 chicago: Lee, Eduardo, Xiaocheng Jiang, Ramón Aguado, Georgios Katsaros, Charles Lieber, and Silvano De Franceschi. “Zero-Bias Anomaly in a Nanowire Quantum Dot Coupled to Superconductors.” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/PhysRevLett.109.186802. ieee: E. Lee, X. Jiang, R. Aguado, G. Katsaros, C. Lieber, and S. De Franceschi, “Zero-bias anomaly in a nanowire quantum dot coupled to superconductors,” Physical Review Letters, vol. 109, no. 18. American Physical Society, 2012. ista: Lee E, Jiang X, Aguado R, Katsaros G, Lieber C, De Franceschi S. 2012. Zero-bias anomaly in a nanowire quantum dot coupled to superconductors. Physical Review Letters. 109(18). mla: Lee, Eduardo, et al. “Zero-Bias Anomaly in a Nanowire Quantum Dot Coupled to Superconductors.” Physical Review Letters, vol. 109, no. 18, American Physical Society, 2012, doi:10.1103/PhysRevLett.109.186802. short: E. Lee, X. Jiang, R. Aguado, G. Katsaros, C. Lieber, S. De Franceschi, Physical Review Letters 109 (2012). date_created: 2018-12-11T11:53:51Z date_published: 2012-10-31T00:00:00Z date_updated: 2021-01-12T06:53:01Z day: '31' doi: 10.1103/PhysRevLett.109.186802 extern: 1 intvolume: ' 109' issue: '18' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1207.1259 month: '10' oa: 1 publication: Physical Review Letters publication_status: published publisher: American Physical Society publist_id: '5366' quality_controlled: 0 status: public title: Zero-bias anomaly in a nanowire quantum dot coupled to superconductors type: journal_article volume: 109 year: '2012' ... --- _id: '1756' abstract: - lang: eng text: We report on the electronic transport properties of multiple-gate devices fabricated from undoped silicon nanowires. Understanding and control of the relevant transport mechanisms was achieved by means of local electrostatic gating and temperature-dependent measurements. The roles of the source/drain contacts and of the silicon channel could be independently evaluated and tuned. Wrap gates surrounding the silicide-silicon contact interfaces were proved to be effective in inducing a full suppression of the contact Schottky barriers, thereby enabling carrier injection down to liquid helium temperature. By independently tuning the effective Schottky barrier heights, a variety of reconfigurable device functionalities could be obtained. In particular, the same nanowire device could be configured to work as a Schottky barrier transistor, a Schottky diode, or a p-n diode with tunable polarities. This versatility was eventually exploited to realize a NAND logic gate with gain well above one. acknowledgement: This work was supported by the Agence Nationale de la Recherche (ANR) through the ACCESS and COHESION projects and by the European Commission through the Chemtronics program MEST-CT-2005-020513 author: - first_name: Massimo full_name: Mongillo, Massimo last_name: Mongillo - first_name: Panayotis full_name: Spathis, Panayotis N last_name: Spathis - first_name: Georgios full_name: Georgios Katsaros id: 38DB5788-F248-11E8-B48F-1D18A9856A87 last_name: Katsaros - first_name: Pascal full_name: Gentile, Pascal last_name: Gentile - first_name: Silvano full_name: De Franceschi, Silvano last_name: De Franceschi citation: ama: Mongillo M, Spathis P, Katsaros G, Gentile P, De Franceschi S. Multifunctional devices and logic gates with undoped silicon nanowires. Nano Letters. 2012;12(6):3074-3079. doi:10.1021/nl300930m apa: Mongillo, M., Spathis, P., Katsaros, G., Gentile, P., & De Franceschi, S. (2012). Multifunctional devices and logic gates with undoped silicon nanowires. Nano Letters. American Chemical Society. https://doi.org/10.1021/nl300930m chicago: Mongillo, Massimo, Panayotis Spathis, Georgios Katsaros, Pascal Gentile, and Silvano De Franceschi. “Multifunctional Devices and Logic Gates with Undoped Silicon Nanowires.” Nano Letters. American Chemical Society, 2012. https://doi.org/10.1021/nl300930m. ieee: M. Mongillo, P. Spathis, G. Katsaros, P. Gentile, and S. De Franceschi, “Multifunctional devices and logic gates with undoped silicon nanowires,” Nano Letters, vol. 12, no. 6. American Chemical Society, pp. 3074–3079, 2012. ista: Mongillo M, Spathis P, Katsaros G, Gentile P, De Franceschi S. 2012. Multifunctional devices and logic gates with undoped silicon nanowires. Nano Letters. 12(6), 3074–3079. mla: Mongillo, Massimo, et al. “Multifunctional Devices and Logic Gates with Undoped Silicon Nanowires.” Nano Letters, vol. 12, no. 6, American Chemical Society, 2012, pp. 3074–79, doi:10.1021/nl300930m. short: M. Mongillo, P. Spathis, G. Katsaros, P. Gentile, S. De Franceschi, Nano Letters 12 (2012) 3074–3079. date_created: 2018-12-11T11:53:50Z date_published: 2012-06-13T00:00:00Z date_updated: 2021-01-12T06:53:00Z day: '13' doi: 10.1021/nl300930m extern: 1 intvolume: ' 12' issue: '6' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1208.1465 month: '06' oa: 1 page: 3074 - 3079 publication: Nano Letters publication_status: published publisher: American Chemical Society publist_id: '5368' quality_controlled: 0 status: public title: Multifunctional devices and logic gates with undoped silicon nanowires type: journal_article volume: 12 year: '2012' ... --- _id: '1783' abstract: - lang: eng text: Nonlinearity and entanglement are two important properties by which physical systems can be identified as nonclassical. We study the dynamics of the resonant interaction of up to N=3 two-level systems and a single mode of the electromagnetic field sharing a single excitation dynamically. We observe coherent vacuum Rabi oscillations and their nonlinear √N speedup by tracking the populations of all qubits and the resonator in time. We use quantum state tomography to show explicitly that the dynamics generates maximally entangled states of the W class in a time limited only by the collective interaction rate. We use an entanglement witness and the 3-tangle to characterize the state whose fidelity F=78% is limited in our experiments by crosstalk arising during the simultaneous qubit manipulations which is absent in a sequential approach with F=91%. acknowledgement: This work was supported by the Swiss National Science Foundation (SNF) and the EU IP SOLID author: - first_name: Jonas full_name: Mlynek, Jonas A last_name: Mlynek - first_name: Abdufarrukh full_name: Abdumalikov, Abdufarrukh A last_name: Abdumalikov - first_name: Johannes M full_name: Johannes Fink id: 4B591CBA-F248-11E8-B48F-1D18A9856A87 last_name: Fink orcid: 0000-0001-8112-028X - first_name: L. full_name: Steffen, L. Kraig last_name: Steffen - first_name: Matthias full_name: Baur, Matthias P last_name: Baur - first_name: C full_name: Lang, C last_name: Lang - first_name: Arjan full_name: Van Loo, Arjan F last_name: Van Loo - first_name: Andreas full_name: Wallraff, Andreas last_name: Wallraff citation: ama: Mlynek J, Abdumalikov A, Fink JM, et al. Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics. Physical Review A - Atomic, Molecular, and Optical Physics. 2012;86(5). doi:10.1103/PhysRevA.86.053838 apa: Mlynek, J., Abdumalikov, A., Fink, J. M., Steffen, L., Baur, M., Lang, C., … Wallraff, A. (2012). Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics. Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society. https://doi.org/10.1103/PhysRevA.86.053838 chicago: Mlynek, Jonas, Abdufarrukh Abdumalikov, Johannes M Fink, L. Steffen, Matthias Baur, C Lang, Arjan Van Loo, and Andreas Wallraff. “Demonstrating W-Type Entanglement of Dicke States in Resonant Cavity Quantum Electrodynamics.” Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society, 2012. https://doi.org/10.1103/PhysRevA.86.053838. ieee: J. Mlynek et al., “Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics,” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 86, no. 5. American Physical Society, 2012. ista: Mlynek J, Abdumalikov A, Fink JM, Steffen L, Baur M, Lang C, Van Loo A, Wallraff A. 2012. Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics. Physical Review A - Atomic, Molecular, and Optical Physics. 86(5). mla: Mlynek, Jonas, et al. “Demonstrating W-Type Entanglement of Dicke States in Resonant Cavity Quantum Electrodynamics.” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 86, no. 5, American Physical Society, 2012, doi:10.1103/PhysRevA.86.053838. short: J. Mlynek, A. Abdumalikov, J.M. Fink, L. Steffen, M. Baur, C. Lang, A. Van Loo, A. Wallraff, Physical Review A - Atomic, Molecular, and Optical Physics 86 (2012). date_created: 2018-12-11T11:53:59Z date_published: 2012-11-30T00:00:00Z date_updated: 2021-01-12T06:53:10Z day: '30' doi: 10.1103/PhysRevA.86.053838 extern: 1 intvolume: ' 86' issue: '5' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1202.5191 month: '11' oa: 1 publication: Physical Review A - Atomic, Molecular, and Optical Physics publication_status: published publisher: American Physical Society publist_id: '5332' quality_controlled: 0 status: public title: Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics type: journal_article volume: 86 year: '2012' ... --- _id: '1782' abstract: - lang: eng text: Steering a quantum harmonic oscillator state along cyclic trajectories leads to a path-dependent geometric phase. Here we describe its experimental observation in an electronic harmonic oscillator. We use a superconducting qubit as a nonlinear probe of the phase, which is otherwise unobservable due to the linearity of the oscillator. We show that the geometric phase is, for a variety of cyclic paths, proportional to the area enclosed in the quadrature plane. At the transition to the nonadiabatic regime, we study corrections to the phase and dephasing of the qubit caused by qubit-resonator entanglement. In particular, we identify parameters for which this dephasing mechanism is negligible even in the nonadiabatic regime. The demonstrated controllability makes our system a versatile tool to study geometric phases in open quantum systems and to investigate their potential for quantum information processing. acknowledgement: This work is supported by the EU project GEOMDISS, the Austrian Science Foundation (S. F.), and the Swiss National Science Foundation (SNSF) author: - first_name: M full_name: Pechal, M last_name: Pechal - first_name: Stefan full_name: Berger, Stefan T last_name: Berger - first_name: Abdufarrukh full_name: Abdumalikov, Abdufarrukh A last_name: Abdumalikov - first_name: Johannes M full_name: Johannes Fink id: 4B591CBA-F248-11E8-B48F-1D18A9856A87 last_name: Fink orcid: 0000-0001-8112-028X - first_name: Jonas full_name: Mlynek, Jonas A last_name: Mlynek - first_name: L. full_name: Steffen, L. Kraig last_name: Steffen - first_name: Andreas full_name: Wallraff, Andreas last_name: Wallraff - first_name: Stefan full_name: Filipp, Stefan last_name: Filipp citation: ama: Pechal M, Berger S, Abdumalikov A, et al. Geometric phase and nonadiabatic effects in an electronic harmonic oscillator. Physical Review Letters. 2012;108(17). doi:10.1103/PhysRevLett.108.170401 apa: Pechal, M., Berger, S., Abdumalikov, A., Fink, J. M., Mlynek, J., Steffen, L., … Filipp, S. (2012). Geometric phase and nonadiabatic effects in an electronic harmonic oscillator. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.108.170401 chicago: Pechal, M, Stefan Berger, Abdufarrukh Abdumalikov, Johannes M Fink, Jonas Mlynek, L. Steffen, Andreas Wallraff, and Stefan Filipp. “Geometric Phase and Nonadiabatic Effects in an Electronic Harmonic Oscillator.” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/PhysRevLett.108.170401. ieee: M. Pechal et al., “Geometric phase and nonadiabatic effects in an electronic harmonic oscillator,” Physical Review Letters, vol. 108, no. 17. American Physical Society, 2012. ista: Pechal M, Berger S, Abdumalikov A, Fink JM, Mlynek J, Steffen L, Wallraff A, Filipp S. 2012. Geometric phase and nonadiabatic effects in an electronic harmonic oscillator. Physical Review Letters. 108(17). mla: Pechal, M., et al. “Geometric Phase and Nonadiabatic Effects in an Electronic Harmonic Oscillator.” Physical Review Letters, vol. 108, no. 17, American Physical Society, 2012, doi:10.1103/PhysRevLett.108.170401. short: M. Pechal, S. Berger, A. Abdumalikov, J.M. Fink, J. Mlynek, L. Steffen, A. Wallraff, S. Filipp, Physical Review Letters 108 (2012). date_created: 2018-12-11T11:53:59Z date_published: 2012-04-23T00:00:00Z date_updated: 2021-01-12T06:53:10Z day: '23' doi: 10.1103/PhysRevLett.108.170401 extern: 1 intvolume: ' 108' issue: '17' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1109.1157 month: '04' oa: 1 publication: Physical Review Letters publication_status: published publisher: American Physical Society publist_id: '5333' quality_controlled: 0 status: public title: Geometric phase and nonadiabatic effects in an electronic harmonic oscillator type: journal_article volume: 108 year: '2012' ... --- _id: '1784' abstract: - lang: eng text: A localized qubit entangled with a propagating quantum field is well suited to study nonlocal aspects of quantum mechanics and may also provide a channel to communicate between spatially separated nodes in a quantum network. Here, we report the on-demand generation and characterization of Bell-type entangled states between a superconducting qubit and propagating microwave fields composed of zero-, one-, and two-photon Fock states. Using low noise linear amplification and efficient data acquisition we extract all relevant correlations between the qubit and the photon states and demonstrate entanglement with high fidelity. acknowledgement: This work was supported by the European Research Council (ERC) through a Starting Grant and by ETHZ author: - first_name: Christopher full_name: Eichler, Christopher last_name: Eichler - first_name: C full_name: Lang, C last_name: Lang - first_name: Johannes M full_name: Johannes Fink id: 4B591CBA-F248-11E8-B48F-1D18A9856A87 last_name: Fink orcid: 0000-0001-8112-028X - first_name: J full_name: Govenius, J last_name: Govenius - first_name: Stefan full_name: Filipp, Stefan last_name: Filipp - first_name: Andreas full_name: Wallraff, Andreas last_name: Wallraff citation: ama: Eichler C, Lang C, Fink JM, Govenius J, Filipp S, Wallraff A. Observation of entanglement between itinerant microwave photons and a superconducting qubit. Physical Review Letters. 2012;109(24). doi:10.1103/PhysRevLett.109.240501 apa: Eichler, C., Lang, C., Fink, J. M., Govenius, J., Filipp, S., & Wallraff, A. (2012). Observation of entanglement between itinerant microwave photons and a superconducting qubit. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.109.240501 chicago: Eichler, Christopher, C Lang, Johannes M Fink, J Govenius, Stefan Filipp, and Andreas Wallraff. “Observation of Entanglement between Itinerant Microwave Photons and a Superconducting Qubit.” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/PhysRevLett.109.240501. ieee: C. Eichler, C. Lang, J. M. Fink, J. Govenius, S. Filipp, and A. Wallraff, “Observation of entanglement between itinerant microwave photons and a superconducting qubit,” Physical Review Letters, vol. 109, no. 24. American Physical Society, 2012. ista: Eichler C, Lang C, Fink JM, Govenius J, Filipp S, Wallraff A. 2012. Observation of entanglement between itinerant microwave photons and a superconducting qubit. Physical Review Letters. 109(24). mla: Eichler, Christopher, et al. “Observation of Entanglement between Itinerant Microwave Photons and a Superconducting Qubit.” Physical Review Letters, vol. 109, no. 24, American Physical Society, 2012, doi:10.1103/PhysRevLett.109.240501. short: C. Eichler, C. Lang, J.M. Fink, J. Govenius, S. Filipp, A. Wallraff, Physical Review Letters 109 (2012). date_created: 2018-12-11T11:53:59Z date_published: 2012-12-10T00:00:00Z date_updated: 2021-01-12T06:53:10Z day: '10' doi: 10.1103/PhysRevLett.109.240501 extern: 1 intvolume: ' 109' issue: '24' main_file_link: - open_access: '0' url: http://arxiv.org/abs/1209.0441 month: '12' publication: Physical Review Letters publication_status: published publisher: American Physical Society publist_id: '5330' quality_controlled: 0 status: public title: Observation of entanglement between itinerant microwave photons and a superconducting qubit type: journal_article volume: 109 year: '2012' ... --- _id: '1801' abstract: - lang: eng text: Brain circuits are assembled from a large variety of morphologically and functionally diverse cell types. It is not known how the intermingled cell types of an individual adult brain region differ in their expressed genomes. Here we describe an atlas of cell type transcriptomes in one brain region, the mouse retina. We found that each adult cell type expressed a specific set of genes, including a unique set of transcription factors, forming a 'barcode' for cell identity. Cell type transcriptomes carried enough information to categorize cells into morphological classes and types. Several genes that were specifically expressed in particular retinal circuit elements, such as inhibitory neuron types, are associated with eye diseases. The resource described here allows gene expression to be compared across adult retinal cell types, experimenting with specific transcription factors to differentiate stem or somatic cells to retinal cell types, and predicting cellular targets of newly discovered disease-associated genes. acknowledgement: The study was supported by Friedrich Miescher Institute funds, Alcon award, a National Center of Competence in Research Genetics grant, a European Research Council grant, a Swiss-Hungarian grant, and RETICIRC, TREATRUSH, SEEBETTER and OPTONEURO grants from the European Union to B.R. author: - first_name: Sandra full_name: Sandra Siegert id: 36ACD32E-F248-11E8-B48F-1D18A9856A87 last_name: Siegert orcid: 0000-0001-8635-0877 - first_name: Erik full_name: Cabuy, Erik last_name: Cabuy - first_name: Brigitte full_name: Scherf, Brigitte G last_name: Scherf - first_name: Hubertus full_name: Kohler, Hubertus last_name: Kohler - first_name: Satchidananda full_name: Panda, Satchidananda last_name: Panda - first_name: Yunzheng full_name: Le, Yunzheng last_name: Le - first_name: Hans full_name: Fehling, Hans J last_name: Fehling - first_name: Dimos full_name: Gaidatzis, Dimos last_name: Gaidatzis - first_name: Michael full_name: Stadler, Michael B last_name: Stadler - first_name: Botond full_name: Roska, Botond M last_name: Roska citation: ama: Siegert S, Cabuy E, Scherf B, et al. Transcriptional code and disease map for adult retinal cell types. Nature Neuroscience. 2012;15(3):487-495. doi:10.1038/nn.3032 apa: Siegert, S., Cabuy, E., Scherf, B., Kohler, H., Panda, S., Le, Y., … Roska, B. (2012). Transcriptional code and disease map for adult retinal cell types. Nature Neuroscience. Nature Publishing Group. https://doi.org/10.1038/nn.3032 chicago: Siegert, Sandra, Erik Cabuy, Brigitte Scherf, Hubertus Kohler, Satchidananda Panda, Yunzheng Le, Hans Fehling, Dimos Gaidatzis, Michael Stadler, and Botond Roska. “Transcriptional Code and Disease Map for Adult Retinal Cell Types.” Nature Neuroscience. Nature Publishing Group, 2012. https://doi.org/10.1038/nn.3032. ieee: S. Siegert et al., “Transcriptional code and disease map for adult retinal cell types,” Nature Neuroscience, vol. 15, no. 3. Nature Publishing Group, pp. 487–495, 2012. ista: Siegert S, Cabuy E, Scherf B, Kohler H, Panda S, Le Y, Fehling H, Gaidatzis D, Stadler M, Roska B. 2012. Transcriptional code and disease map for adult retinal cell types. Nature Neuroscience. 15(3), 487–495. mla: Siegert, Sandra, et al. “Transcriptional Code and Disease Map for Adult Retinal Cell Types.” Nature Neuroscience, vol. 15, no. 3, Nature Publishing Group, 2012, pp. 487–95, doi:10.1038/nn.3032. short: S. Siegert, E. Cabuy, B. Scherf, H. Kohler, S. Panda, Y. Le, H. Fehling, D. Gaidatzis, M. Stadler, B. Roska, Nature Neuroscience 15 (2012) 487–495. date_created: 2018-12-11T11:54:05Z date_published: 2012-03-01T00:00:00Z date_updated: 2021-01-12T06:53:17Z day: '01' doi: 10.1038/nn.3032 extern: 1 intvolume: ' 15' issue: '3' month: '03' page: 487 - 495 publication: Nature Neuroscience publication_status: published publisher: Nature Publishing Group publist_id: '5309' quality_controlled: 0 status: public title: Transcriptional code and disease map for adult retinal cell types type: journal_article volume: 15 year: '2012' ... --- _id: '1976' abstract: - lang: eng text: 'Complex I is a key enzyme of the respiratory chain in many organisms. This multi-protein complex with an intricate evolutionary history originated from the unification of prebuilt modules of hydrogenases and transporters. Using recently determined crystallographic structures of complex I we reanalyzed evolutionarily related complexes that couple oxidoreduction to trans-membrane ion translocation. Our analysis points to the previously unnoticed structural homology of the electron input module of formate dehydrogenlyases and subunit NuoG of complex I. We also show that all related to complex I hydrogenases likely operate via a conformation driven mechanism with structural changes generated in the conserved coupling site located at the interface of subunits NuoB/D/H. The coupling apparently originated once in evolutionary history, together with subunit NuoH joining hydrogenase and transport modules. Analysis of quinone oxidoreduction properties and the structure of complex I allows us to suggest a fully reversible coupling mechanism. Our model predicts that: 1) proton access to the ketone groups of the bound quinone is rigorously controlled by the protein, 2) the negative electric charge of the anionic ubiquinol head group is a major driving force for conformational changes.' acknowledgement: The work in authors' laboratory was funded by the Medical Research Council. author: - first_name: Rouslan full_name: Efremov, Rouslan G last_name: Efremov - first_name: Leonid A full_name: Leonid Sazanov id: 338D39FE-F248-11E8-B48F-1D18A9856A87 last_name: Sazanov orcid: 0000-0002-0977-7989 citation: ama: Efremov R, Sazanov LA. The coupling mechanism of respiratory complex i - A structural and evolutionary perspective. Biochimica et Biophysica Acta - Bioenergetics. 2012;1817(10):1785-1795. doi:10.1016/j.bbabio.2012.02.015 apa: Efremov, R., & Sazanov, L. A. (2012). The coupling mechanism of respiratory complex i - A structural and evolutionary perspective. Biochimica et Biophysica Acta - Bioenergetics. Elsevier. https://doi.org/10.1016/j.bbabio.2012.02.015 chicago: Efremov, Rouslan, and Leonid A Sazanov. “The Coupling Mechanism of Respiratory Complex i - A Structural and Evolutionary Perspective.” Biochimica et Biophysica Acta - Bioenergetics. Elsevier, 2012. https://doi.org/10.1016/j.bbabio.2012.02.015. ieee: R. Efremov and L. A. Sazanov, “The coupling mechanism of respiratory complex i - A structural and evolutionary perspective,” Biochimica et Biophysica Acta - Bioenergetics, vol. 1817, no. 10. Elsevier, pp. 1785–1795, 2012. ista: Efremov R, Sazanov LA. 2012. The coupling mechanism of respiratory complex i - A structural and evolutionary perspective. Biochimica et Biophysica Acta - Bioenergetics. 1817(10), 1785–1795. mla: Efremov, Rouslan, and Leonid A. Sazanov. “The Coupling Mechanism of Respiratory Complex i - A Structural and Evolutionary Perspective.” Biochimica et Biophysica Acta - Bioenergetics, vol. 1817, no. 10, Elsevier, 2012, pp. 1785–95, doi:10.1016/j.bbabio.2012.02.015. short: R. Efremov, L.A. Sazanov, Biochimica et Biophysica Acta - Bioenergetics 1817 (2012) 1785–1795. date_created: 2018-12-11T11:55:00Z date_published: 2012-10-01T00:00:00Z date_updated: 2019-04-26T07:22:06Z day: '01' doi: 10.1016/j.bbabio.2012.02.015 extern: 1 intvolume: ' 1817' issue: '10' month: '10' page: 1785 - 1795 publication: Biochimica et Biophysica Acta - Bioenergetics publication_status: published publisher: Elsevier publist_id: '5108' quality_controlled: 0 status: public title: The coupling mechanism of respiratory complex i - A structural and evolutionary perspective type: review volume: 1817 year: '2012' ... --- _id: '1972' abstract: - lang: eng text: Outer membrane protein F, a major component of the Escherichia coli outer membrane, was crystallized for the first time in lipidic mesophase of monoolein in novel space groups, P1 and H32. Due to ease of its purification and crystallization OmpF can be used as a benchmark protein for establishing membrane protein crystallization in meso, as a "membrane lyzozyme" The packing of porin trimers in the crystals of space group H32 is similar to natural outer membranes, providing the first high-resolution insight into the close to native packing of OmpF. Surprisingly, interaction between trimers is mediated exclusively by lipids, without direct protein-protein contacts. Multiple ordered lipids are observed and many of them occupy identical positions independently of the space group, identifying preferential interaction sites of lipid acyl chains. Presence of ordered aliphatic chains close to a positively charged area on the porin surface suggests a position for a lipopolysaccharide binding site on the surface of the major E. coli porins. acknowledgement: This work was funded by the Medical Research Council. author: - first_name: Rouslan full_name: Efremov, Rouslan G last_name: Efremov - first_name: Leonid A full_name: Leonid Sazanov id: 338D39FE-F248-11E8-B48F-1D18A9856A87 last_name: Sazanov orcid: 0000-0002-0977-7989 citation: ama: Efremov R, Sazanov LA. Structure of Escherichia coli OmpF porin from lipidic mesophase. Journal of Structural Biology. 2012;178(3):311-318. doi:10.1016/j.jsb.2012.03.005 apa: Efremov, R., & Sazanov, L. A. (2012). Structure of Escherichia coli OmpF porin from lipidic mesophase. Journal of Structural Biology. Academic Press. https://doi.org/10.1016/j.jsb.2012.03.005 chicago: Efremov, Rouslan, and Leonid A Sazanov. “Structure of Escherichia Coli OmpF Porin from Lipidic Mesophase.” Journal of Structural Biology. Academic Press, 2012. https://doi.org/10.1016/j.jsb.2012.03.005. ieee: R. Efremov and L. A. Sazanov, “Structure of Escherichia coli OmpF porin from lipidic mesophase,” Journal of Structural Biology, vol. 178, no. 3. Academic Press, pp. 311–318, 2012. ista: Efremov R, Sazanov LA. 2012. Structure of Escherichia coli OmpF porin from lipidic mesophase. Journal of Structural Biology. 178(3), 311–318. mla: Efremov, Rouslan, and Leonid A. Sazanov. “Structure of Escherichia Coli OmpF Porin from Lipidic Mesophase.” Journal of Structural Biology, vol. 178, no. 3, Academic Press, 2012, pp. 311–18, doi:10.1016/j.jsb.2012.03.005. short: R. Efremov, L.A. Sazanov, Journal of Structural Biology 178 (2012) 311–318. date_created: 2018-12-11T11:54:59Z date_published: 2012-06-01T00:00:00Z date_updated: 2021-01-12T06:54:26Z day: '01' doi: 10.1016/j.jsb.2012.03.005 extern: 1 intvolume: ' 178' issue: '3' month: '06' page: 311 - 318 publication: Journal of Structural Biology publication_status: published publisher: Academic Press publist_id: '5109' quality_controlled: 0 status: public title: Structure of Escherichia coli OmpF porin from lipidic mesophase type: journal_article volume: 178 year: '2012' ... --- _id: '1987' abstract: - lang: eng text: | In the living cell, proteins are able to organize space much larger than their dimensions. In return, changes of intracellular space can influence biochemical reactions, allowing cells to sense their size and shape. Despite the possibility to reconstitute protein self-organization with only a few purified components, we still lack knowledge of how geometrical boundaries affect spatiotemporal protein patterns. Following a minimal systems approach, we used purified proteins and photolithographically patterned membranes to study the influence of spatial confinement on the self-organization of the Min system, a spatial regulator of bacterial cytokinesis, in vitro. We found that the emerging protein pattern responds even to the lateral, two-dimensional geometry of the membrane such that, as in the three-dimensional cell, Min protein waves travel along the longest axis of the membrane patch. This shows that for spatial sensing the Min system does not need to be enclosed in a three-dimensional compartment. Using a computational model we quantitatively analyzed our experimental findings and identified persistent binding of MinE to the membrane as requirement for the Min system to sense geometry. Our results give insight into the interplay between geometrical confinement and biochemical patterns emerging from a nonlinear reaction-diffusion system. acknowledgement: 'This work was supported by the Max-Planck-Society (P.S. and M.L.) and by the German Research Foundation as part of the Research Training Group “Nano- and Biotechnologies for Electronic Device Packaging” (GRK 1401) (J.S.) and by the Leibniz-Award (P.S.). ' author: - first_name: Jakob full_name: Schweizer, Jakob last_name: Schweizer - first_name: Martin full_name: Martin Loose id: 462D4284-F248-11E8-B48F-1D18A9856A87 last_name: Loose orcid: 0000-0001-7309-9724 - first_name: Mike full_name: 'Bonny, Mike ' last_name: Bonny - first_name: Karsten full_name: Kruse, Karsten last_name: Kruse - first_name: Ingolf full_name: Mönch, Ingolf last_name: Mönch - first_name: Petra full_name: 'Schwille, Petra ' last_name: Schwille citation: ama: Schweizer J, Loose M, Bonny M, Kruse K, Mönch I, Schwille P. Geometry sensing by self-organized protein patterns. PNAS. 2012;109(38):15283-15288. doi:10.1073/pnas.1206953109 apa: Schweizer, J., Loose, M., Bonny, M., Kruse, K., Mönch, I., & Schwille, P. (2012). Geometry sensing by self-organized protein patterns. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.1206953109 chicago: Schweizer, Jakob, Martin Loose, Mike Bonny, Karsten Kruse, Ingolf Mönch, and Petra Schwille. “Geometry Sensing by Self-Organized Protein Patterns.” PNAS. National Academy of Sciences, 2012. https://doi.org/10.1073/pnas.1206953109. ieee: J. Schweizer, M. Loose, M. Bonny, K. Kruse, I. Mönch, and P. Schwille, “Geometry sensing by self-organized protein patterns,” PNAS, vol. 109, no. 38. National Academy of Sciences, pp. 15283–15288, 2012. ista: Schweizer J, Loose M, Bonny M, Kruse K, Mönch I, Schwille P. 2012. Geometry sensing by self-organized protein patterns. PNAS. 109(38), 15283–15288. mla: Schweizer, Jakob, et al. “Geometry Sensing by Self-Organized Protein Patterns.” PNAS, vol. 109, no. 38, National Academy of Sciences, 2012, pp. 15283–88, doi:10.1073/pnas.1206953109. short: J. Schweizer, M. Loose, M. Bonny, K. Kruse, I. Mönch, P. Schwille, PNAS 109 (2012) 15283–15288. date_created: 2018-12-11T11:55:04Z date_published: 2012-09-18T00:00:00Z date_updated: 2021-01-12T06:54:31Z day: '18' doi: 10.1073/pnas.1206953109 extern: 1 intvolume: ' 109' issue: '38' month: '09' page: 15283 - 15288 publication: PNAS publication_status: published publisher: National Academy of Sciences publist_id: '5096' quality_controlled: 0 status: public title: Geometry sensing by self-organized protein patterns type: journal_article volume: 109 year: '2012' ... --- _id: '2048' abstract: - lang: eng text: Leakage resilient cryptography attempts to incorporate side-channel leakage into the black-box security model and designs cryptographic schemes that are provably secure within it. Informally, a scheme is leakage-resilient if it remains secure even if an adversary learns a bounded amount of arbitrary information about the schemes internal state. Unfortunately, most leakage resilient schemes are unnecessarily complicated in order to achieve strong provable security guarantees. As advocated by Yu et al. [CCS’10], this mostly is an artefact of the security proof and in practice much simpler construction may already suffice to protect against realistic side-channel attacks. In this paper, we show that indeed for simpler constructions leakage-resilience can be obtained when we aim for relaxed security notions where the leakage-functions and/or the inputs to the primitive are chosen non-adaptively. For example, we show that a three round Feistel network instantiated with a leakage resilient PRF yields a leakage resilient PRP if the inputs are chosen non-adaptively (This complements the result of Dodis and Pietrzak [CRYPTO’10] who show that if a adaptive queries are allowed, a superlogarithmic number of rounds is necessary.) We also show that a minor variation of the classical GGM construction gives a leakage resilient PRF if both, the leakage-function and the inputs, are chosen non-adaptively. acknowledgement: "Sebastian Faust acknowledges support from the Danish National Research Foundation and The National Science Foundation of China (under the grant 61061130540) for the Sino-Danish Center for the Theory of Interactive Computation, within part of this work was performed; and from the CFEM research center, supported by the Danish Strategic Research Council. \r\nSupported by the European Research Council/ERC Starting Grant 259668-PSPC.\r\n" alternative_title: - LNCS author: - first_name: Sebastian full_name: Faust, Sebastian last_name: Faust - first_name: Krzysztof Z full_name: Pietrzak, Krzysztof Z id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87 last_name: Pietrzak orcid: 0000-0002-9139-1654 - first_name: Joachim full_name: Schipper, Joachim id: 7BE863D4-E9CF-11E9-9EDB-90527418172C last_name: Schipper citation: ama: 'Faust S, Pietrzak KZ, Schipper J. Practical leakage-resilient symmetric cryptography. In: Conference Proceedings CHES 2012. Vol 7428. Springer; 2012:213-232. doi:10.1007/978-3-642-33027-8_13' apa: 'Faust, S., Pietrzak, K. Z., & Schipper, J. (2012). Practical leakage-resilient symmetric cryptography. In Conference proceedings CHES 2012 (Vol. 7428, pp. 213–232). Leuven, Belgium: Springer. https://doi.org/10.1007/978-3-642-33027-8_13' chicago: Faust, Sebastian, Krzysztof Z Pietrzak, and Joachim Schipper. “Practical Leakage-Resilient Symmetric Cryptography.” In Conference Proceedings CHES 2012, 7428:213–32. Springer, 2012. https://doi.org/10.1007/978-3-642-33027-8_13. ieee: S. Faust, K. Z. Pietrzak, and J. Schipper, “Practical leakage-resilient symmetric cryptography,” in Conference proceedings CHES 2012, Leuven, Belgium, 2012, vol. 7428, pp. 213–232. ista: 'Faust S, Pietrzak KZ, Schipper J. 2012. Practical leakage-resilient symmetric cryptography. Conference proceedings CHES 2012. CHES: Cryptographic Hardware and Embedded Systems, LNCS, vol. 7428, 213–232.' mla: Faust, Sebastian, et al. “Practical Leakage-Resilient Symmetric Cryptography.” Conference Proceedings CHES 2012, vol. 7428, Springer, 2012, pp. 213–32, doi:10.1007/978-3-642-33027-8_13. short: S. Faust, K.Z. Pietrzak, J. Schipper, in:, Conference Proceedings CHES 2012, Springer, 2012, pp. 213–232. conference: end_date: 2012-09-12 location: Leuven, Belgium name: 'CHES: Cryptographic Hardware and Embedded Systems' start_date: 2012-09-09 date_created: 2018-12-11T11:55:25Z date_published: 2012-09-01T00:00:00Z date_updated: 2021-01-12T06:54:58Z day: '01' department: - _id: KrPi doi: 10.1007/978-3-642-33027-8_13 ec_funded: 1 intvolume: ' 7428' language: - iso: eng main_file_link: - open_access: '1' url: http://www.iacr.org/archive/ches2012/74280211/74280211.pdf month: '09' oa: 1 oa_version: Preprint page: 213 - 232 project: - _id: 258C570E-B435-11E9-9278-68D0E5697425 call_identifier: FP7 grant_number: '259668' name: Provable Security for Physical Cryptography publication: ' Conference proceedings CHES 2012' publication_status: published publisher: Springer publist_id: '5003' quality_controlled: '1' scopus_import: 1 status: public title: Practical leakage-resilient symmetric cryptography type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 7428 year: '2012' ... --- _id: '2049' abstract: - lang: eng text: "We propose a new authentication protocol that is provably secure based on a ring variant of the learning parity with noise (LPN) problem. The protocol follows the design principle of the LPN-based protocol from Eurocrypt’11 (Kiltz et al.), and like it, is a two round protocol secure against active attacks. Moreover, our protocol has small communication complexity and a very small footprint which makes it applicable in scenarios that involve low-cost, resource-constrained devices.\r\n\r\nPerformance-wise, our protocol is more efficient than previous LPN-based schemes, such as the many variants of the Hopper-Blum (HB) protocol and the aforementioned protocol from Eurocrypt’11. Our implementation results show that it is even comparable to the standard challenge-and-response protocols based on the AES block-cipher. Our basic protocol is roughly 20 times slower than AES, but with the advantage of having 10 times smaller code size. Furthermore, if a few hundred bytes of non-volatile memory are available to allow the storage of some off-line pre-computations, then the online phase of our protocols is only twice as slow as AES.\r\n" acknowledgement: "Supported by the European Research Council / ERC Starting Grant (259668- PSPC)\r\nWe would like to thank the anonymous referees of this confer- ence and those of the ECRYPT Workshop on Lightweight Cryptography for very useful comments, and in particular for the suggestion that the scheme is somewhat vulnerable to a man-in-the-middle attack whenever an adversary observes two reader challenges that are the same. We hope that the attack we described in Appendix A corresponds to what the reviewer had in mind. We also thank Tanja Lange for pointing us to the pa- per of [Kir11] and for discussions of some of her recent work. " alternative_title: - LNCS author: - first_name: Stefan full_name: Heyse, Stefan last_name: Heyse - first_name: Eike full_name: Kiltz, Eike last_name: Kiltz - first_name: Vadim full_name: Lyubashevsky, Vadim last_name: Lyubashevsky - first_name: Christof full_name: Paar, Christof last_name: Paar - first_name: Krzysztof Z full_name: Pietrzak, Krzysztof Z id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87 last_name: Pietrzak orcid: 0000-0002-9139-1654 citation: ama: 'Heyse S, Kiltz E, Lyubashevsky V, Paar C, Pietrzak KZ. Lapin: An efficient authentication protocol based on ring-LPN. In: Conference Proceedings FSE 2012. Vol 7549. Springer; 2012:346-365. doi:10.1007/978-3-642-34047-5_20' apa: 'Heyse, S., Kiltz, E., Lyubashevsky, V., Paar, C., & Pietrzak, K. Z. (2012). Lapin: An efficient authentication protocol based on ring-LPN. In Conference proceedings FSE 2012 (Vol. 7549, pp. 346–365). Washington, DC, USA: Springer. https://doi.org/10.1007/978-3-642-34047-5_20' chicago: 'Heyse, Stefan, Eike Kiltz, Vadim Lyubashevsky, Christof Paar, and Krzysztof Z Pietrzak. “Lapin: An Efficient Authentication Protocol Based on Ring-LPN.” In Conference Proceedings FSE 2012, 7549:346–65. Springer, 2012. https://doi.org/10.1007/978-3-642-34047-5_20.' ieee: 'S. Heyse, E. Kiltz, V. Lyubashevsky, C. Paar, and K. Z. Pietrzak, “Lapin: An efficient authentication protocol based on ring-LPN,” in Conference proceedings FSE 2012, Washington, DC, USA, 2012, vol. 7549, pp. 346–365.' ista: 'Heyse S, Kiltz E, Lyubashevsky V, Paar C, Pietrzak KZ. 2012. Lapin: An efficient authentication protocol based on ring-LPN. Conference proceedings FSE 2012. FSE: Fast Software Encryption, LNCS, vol. 7549, 346–365.' mla: 'Heyse, Stefan, et al. “Lapin: An Efficient Authentication Protocol Based on Ring-LPN.” Conference Proceedings FSE 2012, vol. 7549, Springer, 2012, pp. 346–65, doi:10.1007/978-3-642-34047-5_20.' short: S. Heyse, E. Kiltz, V. Lyubashevsky, C. Paar, K.Z. Pietrzak, in:, Conference Proceedings FSE 2012, Springer, 2012, pp. 346–365. conference: end_date: 2012-03-21 location: Washington, DC, USA name: 'FSE: Fast Software Encryption' start_date: 2012-03-19 date_created: 2018-12-11T11:55:25Z date_published: 2012-03-01T00:00:00Z date_updated: 2021-01-12T06:54:58Z day: '01' department: - _id: KrPi doi: 10.1007/978-3-642-34047-5_20 ec_funded: 1 intvolume: ' 7549' language: - iso: eng main_file_link: - open_access: '1' url: http://www.iacr.org/archive/fse2012/75490350/75490350.pdf month: '03' oa: 1 oa_version: Preprint page: 346 - 365 project: - _id: 258C570E-B435-11E9-9278-68D0E5697425 call_identifier: FP7 grant_number: '259668' name: Provable Security for Physical Cryptography publication: ' Conference proceedings FSE 2012' publication_status: published publisher: Springer publist_id: '5002' quality_controlled: '1' scopus_import: 1 status: public title: 'Lapin: An efficient authentication protocol based on ring-LPN' type: conference user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87 volume: 7549 year: '2012' ... --- _id: '2073' abstract: - lang: eng text: 'Background: Drosophila albomicans is a unique model organism for studying both sex chromosome and B chromosome evolution. A pair of its autosomes comprising roughly 40% of the whole genome has fused to the ancient X and Y chromosomes only about 0.12 million years ago, thereby creating the youngest and most gene-rich neo-sex system reported to date. This species also possesses recently derived B chromosomes that show non-Mendelian inheritance and significantly influence fertility.Methods: We sequenced male flies with B chromosomes at 124.5-fold genome coverage using next-generation sequencing. To characterize neo-Y specific changes and B chromosome sequences, we also sequenced inbred female flies derived from the same strain but without B''s at 28.5-fold.Results: We assembled a female genome and placed 53% of the sequence and 85% of the annotated proteins into specific chromosomes, by comparison with the 12 Drosophila genomes. Despite its very recent origin, the non-recombining neo-Y chromosome shows various signs of degeneration, including a significant enrichment of non-functional genes compared to the neo-X, and an excess of tandem duplications relative to other chromosomes. We also characterized a B-chromosome linked scaffold that contains an actively transcribed unit and shows sequence similarity to the subcentromeric regions of both the ancient X and the neo-X chromosome.Conclusions: Our results provide novel insights into the very early stages of sex chromosome evolution and B chromosome origination, and suggest an unprecedented connection between the births of these two systems in D. albomicans.' author: - first_name: Qi full_name: Zhou, Qi last_name: Zhou - first_name: Hongmei full_name: Zhu, Hongmei last_name: Zhu - first_name: Quanfei full_name: Huang, Quanfei last_name: Huang - first_name: Li full_name: Zhao, Li last_name: Zhao - first_name: Guo full_name: Zhang, Guo J last_name: Zhang - first_name: Scott full_name: Roy, Scott W last_name: Roy - first_name: Beatriz full_name: Beatriz Vicoso id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87 last_name: Vicoso orcid: 0000-0002-4579-8306 - first_name: Zhaolin full_name: Xuan, Zhaolin last_name: Xuan - first_name: Jue full_name: Ruan, Jue last_name: Ruan - first_name: Yue full_name: Zhang, Yue last_name: Zhang - first_name: Ruoping full_name: Zhao, Ruoping last_name: Zhao - first_name: Chen full_name: Ye, Chen last_name: Ye - first_name: Xiuqing full_name: Zhang, Xiuqing last_name: Zhang - first_name: Jùn full_name: Wang, Jùn last_name: Wang - first_name: Wen full_name: Wang, Wen last_name: Wang - first_name: Doris full_name: Bachtrog, Doris last_name: Bachtrog citation: ama: Zhou Q, Zhu H, Huang Q, et al. Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans. BMC Genomics. 2012;13(1). doi:10.1186/1471-2164-13-109 apa: Zhou, Q., Zhu, H., Huang, Q., Zhao, L., Zhang, G., Roy, S., … Bachtrog, D. (2012). Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans. BMC Genomics. BioMed Central. https://doi.org/10.1186/1471-2164-13-109 chicago: Zhou, Qi, Hongmei Zhu, Quanfei Huang, Li Zhao, Guo Zhang, Scott Roy, Beatriz Vicoso, et al. “Deciphering Neo-Sex and B Chromosome Evolution by the Draft Genome of Drosophila Albomicans.” BMC Genomics. BioMed Central, 2012. https://doi.org/10.1186/1471-2164-13-109. ieee: Q. Zhou et al., “Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans,” BMC Genomics, vol. 13, no. 1. BioMed Central, 2012. ista: Zhou Q, Zhu H, Huang Q, Zhao L, Zhang G, Roy S, Vicoso B, Xuan Z, Ruan J, Zhang Y, Zhao R, Ye C, Zhang X, Wang J, Wang W, Bachtrog D. 2012. Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans. BMC Genomics. 13(1). mla: Zhou, Qi, et al. “Deciphering Neo-Sex and B Chromosome Evolution by the Draft Genome of Drosophila Albomicans.” BMC Genomics, vol. 13, no. 1, BioMed Central, 2012, doi:10.1186/1471-2164-13-109. short: Q. Zhou, H. Zhu, Q. Huang, L. Zhao, G. Zhang, S. Roy, B. Vicoso, Z. Xuan, J. Ruan, Y. Zhang, R. Zhao, C. Ye, X. Zhang, J. Wang, W. Wang, D. Bachtrog, BMC Genomics 13 (2012). date_created: 2018-12-11T11:55:33Z date_published: 2012-03-22T00:00:00Z date_updated: 2021-01-12T06:55:08Z day: '22' doi: 10.1186/1471-2164-13-109 extern: 1 intvolume: ' 13' issue: '1' license: https://creativecommons.org/licenses/by/4.0/ month: '03' publication: BMC Genomics publication_status: published publisher: BioMed Central publist_id: '4965' quality_controlled: 0 status: public title: Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article volume: 13 year: '2012' ... --- _id: '2079' abstract: - lang: eng text: We introduce an algorithm and representation for fabricating 3D shape abstractions using mutually intersecting planar cut-outs. The planes have prefabricated slits at their intersections and are assembled by sliding them together. Often such abstractions are used as a sculptural art form or in architecture and are colloquially called ‘cardboard sculptures’. Based on an analysis of construction rules, we propose an extended binary space partitioning tree as an efficient representation of such cardboard models which allows us to quickly evaluate the feasibility of newly added planar elements. The complexity of insertion order quickly increases with the number of planar elements and manual analysis becomes intractable. We provide tools for generating cardboard sculptures with guaranteed constructibility. In combination with a simple optimization and sampling strategy for new elements, planar shape abstraction models can be designed by iteratively adding elements. As an output, we obtain a fabrication plan that can be printed or sent to a laser cutter. We demonstrate the complete process by designing and fabricating cardboard models of various well-known 3D shapes. author: - first_name: Kristian full_name: Hildebrand, Kristian last_name: Hildebrand - first_name: Bernd full_name: Bernd Bickel id: 49876194-F248-11E8-B48F-1D18A9856A87 last_name: Bickel orcid: 0000-0001-6511-9385 - first_name: Marc full_name: Alexa, Marc last_name: Alexa citation: ama: 'Hildebrand K, Bickel B, Alexa M. crdbrd: Shape fabrication by sliding planar slices. Computer Graphics Forum. 2012;31(2pt3):583-592. doi:10.1111/j.1467-8659.2012.03037.x' apa: 'Hildebrand, K., Bickel, B., & Alexa, M. (2012). crdbrd: Shape fabrication by sliding planar slices. Computer Graphics Forum. Wiley-Blackwell. https://doi.org/10.1111/j.1467-8659.2012.03037.x' chicago: 'Hildebrand, Kristian, Bernd Bickel, and Marc Alexa. “Crdbrd: Shape Fabrication by Sliding Planar Slices.” Computer Graphics Forum. Wiley-Blackwell, 2012. https://doi.org/10.1111/j.1467-8659.2012.03037.x.' ieee: 'K. Hildebrand, B. Bickel, and M. Alexa, “crdbrd: Shape fabrication by sliding planar slices,” Computer Graphics Forum, vol. 31, no. 2pt3. Wiley-Blackwell, pp. 583–592, 2012.' ista: 'Hildebrand K, Bickel B, Alexa M. 2012. crdbrd: Shape fabrication by sliding planar slices. Computer Graphics Forum. 31(2pt3), 583–592.' mla: 'Hildebrand, Kristian, et al. “Crdbrd: Shape Fabrication by Sliding Planar Slices.” Computer Graphics Forum, vol. 31, no. 2pt3, Wiley-Blackwell, 2012, pp. 583–92, doi:10.1111/j.1467-8659.2012.03037.x.' short: K. Hildebrand, B. Bickel, M. Alexa, Computer Graphics Forum 31 (2012) 583–592. date_created: 2018-12-11T11:55:35Z date_published: 2012-05-01T00:00:00Z date_updated: 2021-01-12T06:55:10Z day: '01' doi: 10.1111/j.1467-8659.2012.03037.x extern: 1 intvolume: ' 31' issue: 2pt3 month: '05' page: 583 - 592 publication: Computer Graphics Forum publication_status: published publisher: Wiley-Blackwell publist_id: '4959' quality_controlled: 0 status: public title: 'crdbrd: Shape fabrication by sliding planar slices' type: journal_article volume: 31 year: '2012' ... --- _id: '2103' abstract: - lang: eng text: Although facial hair plays an important role in individual expression, facial-hair reconstruction is not addressed by current facecapture systems. Our research addresses this limitation with an algorithm that treats hair and skin surface capture together in a coupled fashion so that a high-quality representation of hair fibers as well as the underlying skin surface can be reconstructed. We propose a passive, camera-based system that is robust against arbitrary motion since all data is acquired within the time period of a single exposure. Our reconstruction algorithm detects and traces hairs in the captured images and reconstructs them in 3D using a multiview stereo approach. Our coupled skin-reconstruction algorithm uses information about the detected hairs to deliver a skin surface that lies underneath all hairs irrespective of occlusions. In dense regions like eyebrows, we employ a hair-synthesis method to create hair fibers that plausibly match the image data. We demonstrate our scanning system on a number of individuals and show that it can successfully reconstruct a variety of facial-hair styles together with the underlying skin surface. author: - first_name: Thabo full_name: Beeler, Thabo last_name: Beeler - first_name: Bernd full_name: Bernd Bickel id: 49876194-F248-11E8-B48F-1D18A9856A87 last_name: Bickel orcid: 0000-0001-6511-9385 - first_name: Gioacchino full_name: Noris, Gioacchino last_name: Noris - first_name: Paul full_name: Beardsley, Paul A last_name: Beardsley - first_name: Steve full_name: Marschner, Steve last_name: Marschner - first_name: Robert full_name: Sumner, Robert W last_name: Sumner - first_name: Markus full_name: Groß, Markus S last_name: Groß citation: ama: Beeler T, Bickel B, Noris G, et al. Coupled 3D reconstruction of sparse facial hair and skin. ACM Transactions on Graphics. 2012;31(4). doi:10.1145/2185520.2185613 apa: Beeler, T., Bickel, B., Noris, G., Beardsley, P., Marschner, S., Sumner, R., & Groß, M. (2012). Coupled 3D reconstruction of sparse facial hair and skin. ACM Transactions on Graphics. ACM. https://doi.org/10.1145/2185520.2185613 chicago: Beeler, Thabo, Bernd Bickel, Gioacchino Noris, Paul Beardsley, Steve Marschner, Robert Sumner, and Markus Groß. “Coupled 3D Reconstruction of Sparse Facial Hair and Skin.” ACM Transactions on Graphics. ACM, 2012. https://doi.org/10.1145/2185520.2185613. ieee: T. Beeler et al., “Coupled 3D reconstruction of sparse facial hair and skin,” ACM Transactions on Graphics, vol. 31, no. 4. ACM, 2012. ista: Beeler T, Bickel B, Noris G, Beardsley P, Marschner S, Sumner R, Groß M. 2012. Coupled 3D reconstruction of sparse facial hair and skin. ACM Transactions on Graphics. 31(4). mla: Beeler, Thabo, et al. “Coupled 3D Reconstruction of Sparse Facial Hair and Skin.” ACM Transactions on Graphics, vol. 31, no. 4, ACM, 2012, doi:10.1145/2185520.2185613. short: T. Beeler, B. Bickel, G. Noris, P. Beardsley, S. Marschner, R. Sumner, M. Groß, ACM Transactions on Graphics 31 (2012). date_created: 2018-12-11T11:55:44Z date_published: 2012-01-01T00:00:00Z date_updated: 2021-01-12T06:55:20Z day: '01' doi: 10.1145/2185520.2185613 extern: 1 intvolume: ' 31' issue: '4' month: '01' publication: ACM Transactions on Graphics publication_status: published publisher: ACM publist_id: '4932' quality_controlled: 0 status: public title: Coupled 3D reconstruction of sparse facial hair and skin type: journal_article volume: 31 year: '2012' ... --- _id: '2101' abstract: - lang: eng text: 'Articulated deformable characters are widespread in computer animation. Unfortunately, we lack methods for their automatic fabrication using modern additive manufacturing (AM) technologies. We propose a method that takes a skinned mesh as input, then estimates a fabricatable single-material model that approximates the 3D kinematics of the corresponding virtual articulated character in a piecewise linear manner. We first extract a set of potential joint locations. From this set, together with optional, user-specified range constraints, we then estimate mechanical friction joints that satisfy inter-joint non-penetration and other fabrication constraints. To avoid brittle joint designs, we place joint centers on an approximate medial axis representation of the input geometry, and maximize each joint''s minimal cross-sectional area. We provide several demonstrations, manufactured as single, assembled pieces using 3D printers. ' acknowledgement: This work was partially supported by NSF grant IIS-1116619. Doug James acknowledges support from Pixar and a fellowship from the John Simon Guggenheim Memorial Foundation author: - first_name: Moritz full_name: Bac̈her, Moritz last_name: Bac̈Her - first_name: Bernd full_name: Bernd Bickel id: 49876194-F248-11E8-B48F-1D18A9856A87 last_name: Bickel orcid: 0000-0001-6511-9385 - first_name: Doug full_name: James, Doug L last_name: James - first_name: Hanspeter full_name: Pfister, Hanspeter last_name: Pfister citation: ama: Bac̈Her M, Bickel B, James D, Pfister H. Fabricating articulated characters from skinned meshes. ACM Transactions on Graphics. 2012;31(4). doi:10.1145/2185520.2185543 apa: Bac̈Her, M., Bickel, B., James, D., & Pfister, H. (2012). Fabricating articulated characters from skinned meshes. ACM Transactions on Graphics. ACM. https://doi.org/10.1145/2185520.2185543 chicago: Bac̈Her, Moritz, Bernd Bickel, Doug James, and Hanspeter Pfister. “Fabricating Articulated Characters from Skinned Meshes.” ACM Transactions on Graphics. ACM, 2012. https://doi.org/10.1145/2185520.2185543. ieee: M. Bac̈Her, B. Bickel, D. James, and H. Pfister, “Fabricating articulated characters from skinned meshes,” ACM Transactions on Graphics, vol. 31, no. 4. ACM, 2012. ista: Bac̈Her M, Bickel B, James D, Pfister H. 2012. Fabricating articulated characters from skinned meshes. ACM Transactions on Graphics. 31(4). mla: Bac̈Her, Moritz, et al. “Fabricating Articulated Characters from Skinned Meshes.” ACM Transactions on Graphics, vol. 31, no. 4, ACM, 2012, doi:10.1145/2185520.2185543. short: M. Bac̈Her, B. Bickel, D. James, H. Pfister, ACM Transactions on Graphics 31 (2012). date_created: 2018-12-11T11:55:43Z date_published: 2012-01-01T00:00:00Z date_updated: 2021-01-12T06:55:19Z day: '01' doi: 10.1145/2185520.2185543 extern: 1 intvolume: ' 31' issue: '4' month: '01' publication: ACM Transactions on Graphics publication_status: published publisher: ACM publist_id: '4933' quality_controlled: 0 status: public title: Fabricating articulated characters from skinned meshes type: journal_article volume: 31 year: '2012' ... --- _id: '2102' abstract: - lang: eng text: 'We propose a complete process for designing, simulating, and fabricating synthetic skin for an animatronics character that mimics the face of a given subject and its expressions. The process starts with measuring the elastic properties of a material used to manufacture synthetic soft tissue. Given these measurements we use physicsbased simulation to predict the behavior of a face when it is driven by the underlying robotic actuation. Next, we capture 3D facial expressions for a given target subject. As the key component of our process, we present a novel optimization scheme that determines the shape of the synthetic skin as well as the actuation parameters that provide the best match to the target expressions. We demonstrate this computational skin design by physically cloning a real human face onto an animatronics figure. ' acknowledgement: This work was supported in part by the NCCR Co-Me of the Swiss NSF author: - first_name: Bernd full_name: Bernd Bickel id: 49876194-F248-11E8-B48F-1D18A9856A87 last_name: Bickel orcid: 0000-0001-6511-9385 - first_name: Peter full_name: Kaufmann, Peter last_name: Kaufmann - first_name: Mélina full_name: Skouras, Mélina last_name: Skouras - first_name: Bernhard full_name: Thomaszewski, Bernhard last_name: Thomaszewski - first_name: Derek full_name: Bradley, Derek J last_name: Bradley - first_name: Thabo full_name: Beeler, Thabo last_name: Beeler - first_name: Philip full_name: Jackson, Philip V last_name: Jackson - first_name: Steve full_name: Marschner, Steve last_name: Marschner - first_name: Wojciech full_name: Matusik, Wojciech last_name: Matusik - first_name: Markus full_name: Groß, Markus S last_name: Groß citation: ama: Bickel B, Kaufmann P, Skouras M, et al. Physical face cloning. ACM Transactions on Graphics. 2012;31(4). doi:10.1145/2185520.2185614 apa: Bickel, B., Kaufmann, P., Skouras, M., Thomaszewski, B., Bradley, D., Beeler, T., … Groß, M. (2012). Physical face cloning. ACM Transactions on Graphics. ACM. https://doi.org/10.1145/2185520.2185614 chicago: Bickel, Bernd, Peter Kaufmann, Mélina Skouras, Bernhard Thomaszewski, Derek Bradley, Thabo Beeler, Philip Jackson, Steve Marschner, Wojciech Matusik, and Markus Groß. “Physical Face Cloning.” ACM Transactions on Graphics. ACM, 2012. https://doi.org/10.1145/2185520.2185614. ieee: B. Bickel et al., “Physical face cloning,” ACM Transactions on Graphics, vol. 31, no. 4. ACM, 2012. ista: Bickel B, Kaufmann P, Skouras M, Thomaszewski B, Bradley D, Beeler T, Jackson P, Marschner S, Matusik W, Groß M. 2012. Physical face cloning. ACM Transactions on Graphics. 31(4). mla: Bickel, Bernd, et al. “Physical Face Cloning.” ACM Transactions on Graphics, vol. 31, no. 4, ACM, 2012, doi:10.1145/2185520.2185614. short: B. Bickel, P. Kaufmann, M. Skouras, B. Thomaszewski, D. Bradley, T. Beeler, P. Jackson, S. Marschner, W. Matusik, M. Groß, ACM Transactions on Graphics 31 (2012). date_created: 2018-12-11T11:55:43Z date_published: 2012-07-04T00:00:00Z date_updated: 2021-01-12T06:55:19Z day: '04' doi: 10.1145/2185520.2185614 extern: 1 intvolume: ' 31' issue: '4' month: '07' publication: ACM Transactions on Graphics publication_status: published publisher: ACM publist_id: '4931' quality_controlled: 0 status: public title: Physical face cloning type: journal_article volume: 31 year: '2012' ... --- _id: '2106' abstract: - lang: eng text: Progress in cloth simulation for computer animation and apparel design has led to a multitude of deformation models, each with its own way of relating geometry, deformation, and forces. As simulators improve, differences between these models become more important, but it is difficult to choose a model and a set of parameters to match a given real material simply by looking at simulation results. This paper provides measurement and fitting methods that allow nonlinear models to be fit to the observed deformation of a particular cloth sample. Unlike standard textile testing, our system measures complex 3D deformations of a sheet of cloth, not just one-dimensional force-displacement curves, so it works under a wider range of deformation conditions. The fitted models are then evaluated by comparison to measured deformations with motions very different from those used for fitting. acknowledgement: This work was funded in part by the Spanish Ministry of Science and Innovation, project TIN2009-07942, and by the European Research Council, project ERC-2011-StG-280135 Animetrics. author: - first_name: Eder full_name: Miguel, Eder last_name: Miguel - first_name: Derek full_name: Bradley, Derek J last_name: Bradley - first_name: Bernhard full_name: Thomaszewski, Bernhard last_name: Thomaszewski - first_name: Bernd full_name: Bernd Bickel id: 49876194-F248-11E8-B48F-1D18A9856A87 last_name: Bickel orcid: 0000-0001-6511-9385 - first_name: Wojciech full_name: Matusik, Wojciech last_name: Matusik - first_name: Miguel full_name: Otaduy, Miguel A last_name: Otaduy - first_name: Steve full_name: Marschner, Steve last_name: Marschner citation: ama: 'Miguel E, Bradley D, Thomaszewski B, et al. Data-driven estimation of cloth simulation models. In: Vol 31. Wiley-Blackwell; 2012:519-528. doi:10.1111/j.1467-8659.2012.03031.x' apa: Miguel, E., Bradley, D., Thomaszewski, B., Bickel, B., Matusik, W., Otaduy, M., & Marschner, S. (2012). Data-driven estimation of cloth simulation models (Vol. 31, pp. 519–528). Presented at the Computer Graphics Forum, Wiley-Blackwell. https://doi.org/10.1111/j.1467-8659.2012.03031.x chicago: Miguel, Eder, Derek Bradley, Bernhard Thomaszewski, Bernd Bickel, Wojciech Matusik, Miguel Otaduy, and Steve Marschner. “Data-Driven Estimation of Cloth Simulation Models,” 31:519–28. Wiley-Blackwell, 2012. https://doi.org/10.1111/j.1467-8659.2012.03031.x. ieee: E. Miguel et al., “Data-driven estimation of cloth simulation models,” presented at the Computer Graphics Forum, 2012, vol. 31, no. 2, pp. 519–528. ista: Miguel E, Bradley D, Thomaszewski B, Bickel B, Matusik W, Otaduy M, Marschner S. 2012. Data-driven estimation of cloth simulation models. Computer Graphics Forum vol. 31, 519–528. mla: Miguel, Eder, et al. Data-Driven Estimation of Cloth Simulation Models. Vol. 31, no. 2, Wiley-Blackwell, 2012, pp. 519–28, doi:10.1111/j.1467-8659.2012.03031.x. short: E. Miguel, D. Bradley, B. Thomaszewski, B. Bickel, W. Matusik, M. Otaduy, S. Marschner, in:, Wiley-Blackwell, 2012, pp. 519–528. conference: name: Computer Graphics Forum date_created: 2018-12-11T11:55:45Z date_published: 2012-05-01T00:00:00Z date_updated: 2021-01-12T06:55:21Z day: '01' doi: 10.1111/j.1467-8659.2012.03031.x extern: 1 intvolume: ' 31' issue: '2' month: '05' page: 519 - 528 publication_status: published publisher: Wiley-Blackwell publist_id: '4929' quality_controlled: 0 status: public title: Data-driven estimation of cloth simulation models type: conference volume: 31 year: '2012' ... --- _id: '2104' abstract: - lang: eng text: 'In recent years, various methods have been introduced to exploit pre-recorded data to improve the performance and/or realism of dynamic deformations, but their differences and similarities have not been adequately analyzed or discussed. So far, the proposed methods have been explored mainly in the research context. They have not been adopted by the computer graphics industry. This course bridges the gap between research labs and industry to present a unifying theory and understanding of data-driven methods for dynamic deformations that may inspire development of novel solutions. It focuses on application of data-driven methods to three areas of computer animation: dynamic deformation of faces, soft volumetric tissue, and cloth. And it describes how to approach these challenges in a data-driven manner, classifies the various methods, and demonstrates how data-driven methods can work in other settings. ' author: - first_name: Miguel full_name: Otaduy, Miguel A last_name: Otaduy - first_name: Bernd full_name: Bernd Bickel id: 49876194-F248-11E8-B48F-1D18A9856A87 last_name: Bickel orcid: 0000-0001-6511-9385 - first_name: Derek full_name: Bradley, Derek J last_name: Bradley - first_name: Huamin full_name: Wang, Huamin last_name: Wang citation: ama: 'Otaduy M, Bickel B, Bradley D, Wang H. Data-driven simulation methods in computer graphics: Cloth, tissue and faces. In: ACM; 2012. doi:10.1145/2343483.2343495' apa: 'Otaduy, M., Bickel, B., Bradley, D., & Wang, H. (2012). Data-driven simulation methods in computer graphics: Cloth, tissue and faces. Presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, ACM. https://doi.org/10.1145/2343483.2343495' chicago: 'Otaduy, Miguel, Bernd Bickel, Derek Bradley, and Huamin Wang. “Data-Driven Simulation Methods in Computer Graphics: Cloth, Tissue and Faces.” ACM, 2012. https://doi.org/10.1145/2343483.2343495.' ieee: 'M. Otaduy, B. Bickel, D. Bradley, and H. Wang, “Data-driven simulation methods in computer graphics: Cloth, tissue and faces,” presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, 2012.' ista: 'Otaduy M, Bickel B, Bradley D, Wang H. 2012. Data-driven simulation methods in computer graphics: Cloth, tissue and faces. SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques.' mla: 'Otaduy, Miguel, et al. Data-Driven Simulation Methods in Computer Graphics: Cloth, Tissue and Faces. ACM, 2012, doi:10.1145/2343483.2343495.' short: M. Otaduy, B. Bickel, D. Bradley, H. Wang, in:, ACM, 2012. conference: name: 'SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques' date_created: 2018-12-11T11:55:44Z date_published: 2012-01-01T00:00:00Z date_updated: 2021-01-12T06:55:20Z day: '01' doi: 10.1145/2343483.2343495 extern: 1 month: '01' publication_status: published publisher: ACM publist_id: '4930' quality_controlled: 0 status: public title: 'Data-driven simulation methods in computer graphics: Cloth, tissue and faces' type: conference year: '2012' ... --- _id: '2105' acknowledgement: Mélina Skouras was partially supported by the NCCR Co-Me of the Swiss National Science Foundation. author: - first_name: Mélina full_name: Skouras, Mélina last_name: Skouras - first_name: Bernhard full_name: Thomaszewski, Bernhard last_name: Thomaszewski - first_name: Bernd full_name: Bernd Bickel id: 49876194-F248-11E8-B48F-1D18A9856A87 last_name: Bickel orcid: 0000-0001-6511-9385 - first_name: Markus full_name: Groß, Markus S last_name: Groß citation: ama: 'Skouras M, Thomaszewski B, Bickel B, Groß M. Computational design of rubber balloons. In: Vol 31. Wiley-Blackwell; 2012:835-844. doi:10.1111/j.1467-8659.2012.03064.x' apa: 'Skouras, M., Thomaszewski, B., Bickel, B., & Groß, M. (2012). Computational design of rubber balloons (Vol. 31, pp. 835–844). Presented at the EUROGRAPHICS: European Association for Computer Graphics, Wiley-Blackwell. https://doi.org/10.1111/j.1467-8659.2012.03064.x' chicago: Skouras, Mélina, Bernhard Thomaszewski, Bernd Bickel, and Markus Groß. “Computational Design of Rubber Balloons,” 31:835–44. Wiley-Blackwell, 2012. https://doi.org/10.1111/j.1467-8659.2012.03064.x. ieee: 'M. Skouras, B. Thomaszewski, B. Bickel, and M. Groß, “Computational design of rubber balloons,” presented at the EUROGRAPHICS: European Association for Computer Graphics, 2012, vol. 31, no. 2, pp. 835–844.' ista: 'Skouras M, Thomaszewski B, Bickel B, Groß M. 2012. Computational design of rubber balloons. EUROGRAPHICS: European Association for Computer Graphics vol. 31, 835–844.' mla: Skouras, Mélina, et al. Computational Design of Rubber Balloons. Vol. 31, no. 2, Wiley-Blackwell, 2012, pp. 835–44, doi:10.1111/j.1467-8659.2012.03064.x. short: M. Skouras, B. Thomaszewski, B. Bickel, M. Groß, in:, Wiley-Blackwell, 2012, pp. 835–844. conference: name: 'EUROGRAPHICS: European Association for Computer Graphics' date_created: 2018-12-11T11:55:45Z date_published: 2012-05-01T00:00:00Z date_updated: 2021-01-12T06:55:20Z day: '01' doi: 10.1111/j.1467-8659.2012.03064.x extern: 1 intvolume: ' 31' issue: '2' month: '05' page: 835 - 844 publication_status: published publisher: Wiley-Blackwell publist_id: '4928' quality_controlled: 0 status: public title: Computational design of rubber balloons type: conference volume: 31 year: '2012' ... --- _id: '2125' abstract: - lang: eng text: We consider a class of stochastic PDEs of Burgers type in spatial dimension 1, driven by space–time white noise. Even though it is well known that these equations are well posed, it turns out that if one performs a spatial discretization of the nonlinearity in the “wrong” way, then the sequence of approximate equations does converge to a limit, but this limit exhibits an additional correction term. This correction term is proportional to the local quadratic cross-variation (in space) of the gradient of the conserved quantity with the solution itself. This can be understood as a consequence of the fact that for any fixed time, the law of the solution is locally equivalent to Wiener measure, where space plays the role of time. In this sense, the correction term is similar to the usual Itô–Stratonovich correction term that arises when one considers different temporal discretizations of stochastic ODEs. acknowledgement: Supported by Rubicon Grant 680-50-0901 of the Netherlands Organisation for Scientific Research (NWO). Supported by the EPSRC Grants EP/E002269/1 and EP/D071593/1, a Wolfson Research Merit Award of the Royal Society and a Philip Leverhulme prize of the Lev author: - first_name: Martin full_name: Hairer, Martin M last_name: Hairer - first_name: Jan full_name: Jan Maas id: 4C5696CE-F248-11E8-B48F-1D18A9856A87 last_name: Maas orcid: 0000-0002-0845-1338 citation: ama: Hairer M, Maas J. A spatial version of the Itô-Stratonovich correction. Annals of Probability. 2012;40(4):1675-1714. doi:10.1214/11-AOP662 apa: Hairer, M., & Maas, J. (2012). A spatial version of the Itô-Stratonovich correction. Annals of Probability. Institute of Mathematical Statistics. https://doi.org/10.1214/11-AOP662 chicago: Hairer, Martin, and Jan Maas. “A Spatial Version of the Itô-Stratonovich Correction.” Annals of Probability. Institute of Mathematical Statistics, 2012. https://doi.org/10.1214/11-AOP662. ieee: M. Hairer and J. Maas, “A spatial version of the Itô-Stratonovich correction,” Annals of Probability, vol. 40, no. 4. Institute of Mathematical Statistics, pp. 1675–1714, 2012. ista: Hairer M, Maas J. 2012. A spatial version of the Itô-Stratonovich correction. Annals of Probability. 40(4), 1675–1714. mla: Hairer, Martin, and Jan Maas. “A Spatial Version of the Itô-Stratonovich Correction.” Annals of Probability, vol. 40, no. 4, Institute of Mathematical Statistics, 2012, pp. 1675–714, doi:10.1214/11-AOP662. short: M. Hairer, J. Maas, Annals of Probability 40 (2012) 1675–1714. date_created: 2018-12-11T11:55:51Z date_published: 2012-07-01T00:00:00Z date_updated: 2021-01-12T06:55:27Z day: '01' doi: 10.1214/11-AOP662 extern: 1 intvolume: ' 40' issue: '4' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1011.0966 month: '07' oa: 1 page: 1675 - 1714 publication: Annals of Probability publication_status: published publisher: Institute of Mathematical Statistics publist_id: '4908' quality_controlled: 0 status: public title: A spatial version of the Itô-Stratonovich correction type: journal_article volume: 40 year: '2012' ... --- _id: '2127' abstract: - lang: eng text: We study a new notion of Ricci curvature that applies to Markov chains on discrete spaces. This notion relies on geodesic convexity of the entropy and is analogous to the one introduced by Lott, Sturm, and Villani for geodesic measure spaces. In order to apply to the discrete setting, the role of the Wasserstein metric is taken over by a different metric, having the property that continuous time Markov chains are gradient flows of the entropy. Using this notion of Ricci curvature we prove discrete analogues of fundamental results by Bakry–Émery and Otto–Villani. Further, we show that Ricci curvature bounds are preserved under tensorisation. As a special case we obtain the sharp Ricci curvature lower bound for the discrete hypercube. acknowledgement: Jan Maas is supported by Rubicon subsidy 680-50-0901 of the Netherlands Organisation for Scientific Research (NWO). author: - first_name: Matthias full_name: Erbar, Matthias last_name: Erbar - first_name: Jan full_name: Jan Maas id: 4C5696CE-F248-11E8-B48F-1D18A9856A87 last_name: Maas orcid: 0000-0002-0845-1338 citation: ama: Erbar M, Maas J. Ricci curvature of finite Markov chains via convexity of the entropy. Archive for Rational Mechanics and Analysis. 2012;206(3):997-1038. doi:10.1007/s00205-012-0554-z apa: Erbar, M., & Maas, J. (2012). Ricci curvature of finite Markov chains via convexity of the entropy. Archive for Rational Mechanics and Analysis. Springer. https://doi.org/10.1007/s00205-012-0554-z chicago: Erbar, Matthias, and Jan Maas. “Ricci Curvature of Finite Markov Chains via Convexity of the Entropy.” Archive for Rational Mechanics and Analysis. Springer, 2012. https://doi.org/10.1007/s00205-012-0554-z. ieee: M. Erbar and J. Maas, “Ricci curvature of finite Markov chains via convexity of the entropy,” Archive for Rational Mechanics and Analysis, vol. 206, no. 3. Springer, pp. 997–1038, 2012. ista: Erbar M, Maas J. 2012. Ricci curvature of finite Markov chains via convexity of the entropy. Archive for Rational Mechanics and Analysis. 206(3), 997–1038. mla: Erbar, Matthias, and Jan Maas. “Ricci Curvature of Finite Markov Chains via Convexity of the Entropy.” Archive for Rational Mechanics and Analysis, vol. 206, no. 3, Springer, 2012, pp. 997–1038, doi:10.1007/s00205-012-0554-z. short: M. Erbar, J. Maas, Archive for Rational Mechanics and Analysis 206 (2012) 997–1038. date_created: 2018-12-11T11:55:52Z date_published: 2012-12-01T00:00:00Z date_updated: 2021-01-12T06:55:28Z day: '01' doi: 10.1007/s00205-012-0554-z extern: 1 intvolume: ' 206' issue: '3' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1111.2687 month: '12' oa: 1 page: 997 - 1038 publication: Archive for Rational Mechanics and Analysis publication_status: published publisher: Springer publist_id: '4906' quality_controlled: 0 status: public title: Ricci curvature of finite Markov chains via convexity of the entropy type: journal_article volume: 206 year: '2012' ... --- _id: '2128' abstract: - lang: eng text: We introduce a technique for handling Whitney decompositions in Gaussian harmonic analysis and apply it to the study of Gaussian analogues of the classical tent spaces T 1,q of Coifman–Meyer–Stein. acknowledgement: J. Maas was supported by Rubicon subsidy 680-50-0901 of the Netherlands Organisation for Scientific Research (NWO). J. van Neerven was supported by VICI subsidy 639.033.604 of the Netherlands Organisation for Scientific Research (NWO). author: - first_name: Jan full_name: Jan Maas id: 4C5696CE-F248-11E8-B48F-1D18A9856A87 last_name: Maas orcid: 0000-0002-0845-1338 - first_name: Jan full_name: van Neerven, Jan M last_name: Van Neerven - first_name: Pierre full_name: Portal, Pierre last_name: Portal citation: ama: Maas J, Van Neerven J, Portal P. Whitney coverings and the tent spaces T 1,q (γ) for the Gaussian measure. Arkiv för Matematik. 2012;50(2):379-395. doi:10.1007/s11512-010-0143-z apa: Maas, J., Van Neerven, J., & Portal, P. (2012). Whitney coverings and the tent spaces T 1,q (γ) for the Gaussian measure. Arkiv För Matematik. Springer. https://doi.org/10.1007/s11512-010-0143-z chicago: Maas, Jan, Jan Van Neerven, and Pierre Portal. “Whitney Coverings and the Tent Spaces T 1,q (γ) for the Gaussian Measure.” Arkiv För Matematik. Springer, 2012. https://doi.org/10.1007/s11512-010-0143-z. ieee: J. Maas, J. Van Neerven, and P. Portal, “Whitney coverings and the tent spaces T 1,q (γ) for the Gaussian measure,” Arkiv för Matematik, vol. 50, no. 2. Springer, pp. 379–395, 2012. ista: Maas J, Van Neerven J, Portal P. 2012. Whitney coverings and the tent spaces T 1,q (γ) for the Gaussian measure. Arkiv för Matematik. 50(2), 379–395. mla: Maas, Jan, et al. “Whitney Coverings and the Tent Spaces T 1,q (γ) for the Gaussian Measure.” Arkiv För Matematik, vol. 50, no. 2, Springer, 2012, pp. 379–95, doi:10.1007/s11512-010-0143-z. short: J. Maas, J. Van Neerven, P. Portal, Arkiv För Matematik 50 (2012) 379–395. date_created: 2018-12-11T11:55:52Z date_published: 2012-10-01T00:00:00Z date_updated: 2021-01-12T06:55:28Z day: '01' doi: 10.1007/s11512-010-0143-z extern: 1 intvolume: ' 50' issue: '2' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1002.4911 month: '10' oa: 1 page: 379 - 395 publication: Arkiv för Matematik publication_status: published publisher: Springer publist_id: '4907' quality_controlled: 0 status: public title: Whitney coverings and the tent spaces T 1,q (γ) for the Gaussian measure type: journal_article volume: 50 year: '2012' ... --- _id: '2203' abstract: - lang: eng text: We show that the electric dipole-dipole interaction between a pair of polar molecules undergoes an all-out transformation when superimposed by a far-off-resonant optical field. The combined interaction potential becomes tunable by variation of wavelength, polarisation and intensity of the optical field and its dependence on the intermolecular separation exhibits a crossover from an inverse-power to an oscillating behaviour. The ability thereby offered to control molecular interactions opens up avenues toward the creation and manipulation of novel phases of ultracold polar gases among whose characteristics is a long-range entanglement of the dipoles' mutual orientation. We devised an accurate analytic model of such optical-field-dressed dipole-dipole interaction potentials, which enables a straightforward access to the optical-field parameters required for the design of intermolecular interactions in the laboratory. author: - first_name: Mikhail full_name: Mikhail Lemeshko id: 37CB05FA-F248-11E8-B48F-1D18A9856A87 last_name: Lemeshko orcid: 0000-0002-6990-7802 - first_name: Břetislav full_name: Friedrich, Břetislav last_name: Friedrich citation: ama: 'Lemeshko M, Friedrich B. Interaction between polar molecules subject to a far-off-resonant optical field: Entangled dipoles up- or down-holding each other. Molecular Physics. 2012;110(15-16):1873-1881. doi:10.1080/00268976.2012.689868' apa: 'Lemeshko, M., & Friedrich, B. (2012). Interaction between polar molecules subject to a far-off-resonant optical field: Entangled dipoles up- or down-holding each other. Molecular Physics. Taylor & Francis. https://doi.org/10.1080/00268976.2012.689868' chicago: 'Lemeshko, Mikhail, and Břetislav Friedrich. “Interaction between Polar Molecules Subject to a Far-off-Resonant Optical Field: Entangled Dipoles up- or down-Holding Each Other.” Molecular Physics. Taylor & Francis, 2012. https://doi.org/10.1080/00268976.2012.689868.' ieee: 'M. Lemeshko and B. Friedrich, “Interaction between polar molecules subject to a far-off-resonant optical field: Entangled dipoles up- or down-holding each other,” Molecular Physics, vol. 110, no. 15–16. Taylor & Francis, pp. 1873–1881, 2012.' ista: 'Lemeshko M, Friedrich B. 2012. Interaction between polar molecules subject to a far-off-resonant optical field: Entangled dipoles up- or down-holding each other. Molecular Physics. 110(15–16), 1873–1881.' mla: 'Lemeshko, Mikhail, and Břetislav Friedrich. “Interaction between Polar Molecules Subject to a Far-off-Resonant Optical Field: Entangled Dipoles up- or down-Holding Each Other.” Molecular Physics, vol. 110, no. 15–16, Taylor & Francis, 2012, pp. 1873–81, doi:10.1080/00268976.2012.689868.' short: M. Lemeshko, B. Friedrich, Molecular Physics 110 (2012) 1873–1881. date_created: 2018-12-11T11:56:18Z date_published: 2012-01-01T00:00:00Z date_updated: 2021-01-12T06:55:58Z day: '01' doi: 10.1080/00268976.2012.689868 extern: 1 intvolume: ' 110' issue: 15-16 main_file_link: - open_access: '1' url: http://arxiv.org/abs/1108.4583 month: '01' oa: 1 page: 1873 - 1881 publication: Molecular Physics publication_status: published publisher: Taylor & Francis publist_id: '4770' quality_controlled: 0 status: public title: 'Interaction between polar molecules subject to a far-off-resonant optical field: Entangled dipoles up- or down-holding each other' type: journal_article volume: 110 year: '2012' ... --- _id: '2201' abstract: - lang: eng text: We study the growth dynamics of ordered structures of strongly interacting polar molecules in optical lattices. Using a dipole blockade of microwave excitations, we map the system onto an interacting spin-1/2 model possessing ground states with crystalline order, and describe a way to prepare these states by nonadiabatically driving the transitions between molecular rotational levels. The proposed technique bypasses the need to cross a phase transition and allows for the creation of ordered domains of considerably larger size compared to approaches relying on adiabatic preparation. article_processing_charge: No author: - first_name: Mikhail full_name: Lemeshko, Mikhail id: 37CB05FA-F248-11E8-B48F-1D18A9856A87 last_name: Lemeshko orcid: 0000-0002-6990-7802 - first_name: Roman full_name: Krems, Roman last_name: Krems - first_name: Hendrik full_name: Weimer, Hendrik last_name: Weimer citation: ama: Lemeshko M, Krems R, Weimer H. Nonadiabatic preparation of spin crystals with ultracold polar molecules. Physical Review Letters. 2012;109(3). doi:10.1103/PhysRevLett.109.035301 apa: Lemeshko, M., Krems, R., & Weimer, H. (2012). Nonadiabatic preparation of spin crystals with ultracold polar molecules. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.109.035301 chicago: Lemeshko, Mikhail, Roman Krems, and Hendrik Weimer. “Nonadiabatic Preparation of Spin Crystals with Ultracold Polar Molecules.” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/PhysRevLett.109.035301. ieee: M. Lemeshko, R. Krems, and H. Weimer, “Nonadiabatic preparation of spin crystals with ultracold polar molecules,” Physical Review Letters, vol. 109, no. 3. American Physical Society, 2012. ista: Lemeshko M, Krems R, Weimer H. 2012. Nonadiabatic preparation of spin crystals with ultracold polar molecules. Physical Review Letters. 109(3). mla: Lemeshko, Mikhail, et al. “Nonadiabatic Preparation of Spin Crystals with Ultracold Polar Molecules.” Physical Review Letters, vol. 109, no. 3, American Physical Society, 2012, doi:10.1103/PhysRevLett.109.035301. short: M. Lemeshko, R. Krems, H. Weimer, Physical Review Letters 109 (2012). date_created: 2018-12-11T11:56:17Z date_published: 2012-07-16T00:00:00Z date_updated: 2021-11-16T08:01:02Z day: '16' doi: 10.1103/PhysRevLett.109.035301 extern: '1' intvolume: ' 109' issue: '3' language: - iso: eng main_file_link: - open_access: '1' url: http://arxiv.org/abs/1203.0010 month: '07' oa: 1 oa_version: None publication: Physical Review Letters publication_status: published publisher: American Physical Society publist_id: '4772' related_material: link: - relation: erratum url: https://doi.org/10.1103/PhysRevLett.109.049901 status: public title: Nonadiabatic preparation of spin crystals with ultracold polar molecules type: journal_article user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9 volume: 109 year: '2012' ... --- _id: '2202' abstract: - lang: eng text: We propose a method for sensitive parallel detection of low-frequency electromagnetic fields based on the fine structure interactions in paramagnetic polar molecules. Compared to the recently implemented scheme employing ultracold 87Rb atoms by Böhi, the technique based on molecules offers a 100-fold higher sensitivity, the possibility to measure both the electric and magnetic field components, and a probe of a wide range of frequencies from the dc limit to the THz regime. author: - first_name: Sergey full_name: Alyabyshev, Sergey V last_name: Alyabyshev - first_name: Mikhail full_name: Mikhail Lemeshko id: 37CB05FA-F248-11E8-B48F-1D18A9856A87 last_name: Lemeshko orcid: 0000-0002-6990-7802 - first_name: Roman full_name: Krems, Roman V last_name: Krems citation: ama: Alyabyshev S, Lemeshko M, Krems R. Sensitive imaging of electromagnetic fields with paramagnetic polar molecules. Physical Review A - Atomic, Molecular, and Optical Physics. 2012;86(1). doi:10.1103/PhysRevA.86.013409 apa: Alyabyshev, S., Lemeshko, M., & Krems, R. (2012). Sensitive imaging of electromagnetic fields with paramagnetic polar molecules. Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society. https://doi.org/10.1103/PhysRevA.86.013409 chicago: Alyabyshev, Sergey, Mikhail Lemeshko, and Roman Krems. “Sensitive Imaging of Electromagnetic Fields with Paramagnetic Polar Molecules.” Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society, 2012. https://doi.org/10.1103/PhysRevA.86.013409. ieee: S. Alyabyshev, M. Lemeshko, and R. Krems, “Sensitive imaging of electromagnetic fields with paramagnetic polar molecules,” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 86, no. 1. American Physical Society, 2012. ista: Alyabyshev S, Lemeshko M, Krems R. 2012. Sensitive imaging of electromagnetic fields with paramagnetic polar molecules. Physical Review A - Atomic, Molecular, and Optical Physics. 86(1). mla: Alyabyshev, Sergey, et al. “Sensitive Imaging of Electromagnetic Fields with Paramagnetic Polar Molecules.” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 86, no. 1, American Physical Society, 2012, doi:10.1103/PhysRevA.86.013409. short: S. Alyabyshev, M. Lemeshko, R. Krems, Physical Review A - Atomic, Molecular, and Optical Physics 86 (2012). date_created: 2018-12-11T11:56:18Z date_published: 2012-07-13T00:00:00Z date_updated: 2021-01-12T06:55:57Z day: '13' doi: 10.1103/PhysRevA.86.013409 extern: 1 intvolume: ' 86' issue: '1' main_file_link: - open_access: '1' url: http://arxiv.org/abs/1202.1857 month: '07' oa: 1 publication: Physical Review A - Atomic, Molecular, and Optical Physics publication_status: published publisher: American Physical Society publist_id: '4773' quality_controlled: 0 status: public title: Sensitive imaging of electromagnetic fields with paramagnetic polar molecules type: journal_article volume: 86 year: '2012' ... --- _id: '2263' abstract: - lang: eng text: Nestin-cre transgenic mice have been widely used to direct recombination to neural stem cells (NSCs) and intermediate neural progenitor cells (NPCs). Here we report that a readily utilized, and the only commercially available, Nestin-cre line is insufficient for directing recombination in early embryonic NSCs and NPCs. Analysis of recombination efficiency in multiple cre-dependent reporters and a genetic mosaic line revealed consistent temporal and spatial patterns of recombination in NSCs and NPCs. For comparison we utilized a knock-in Emx1cre line and found robust recombination in NSCs and NPCs in ventricular and subventricular zones of the cerebral cortices as early as embryonic day 12.5. In addition we found that the rate of Nestin-cre driven recombination only reaches sufficiently high levels in NSCs and NPCs during late embryonic and early postnatal periods. These findings are important when commercially available cre lines are considered for directing recombination to embryonic NSCs and NPCs. author: - first_name: Huixuan full_name: Liang, Huixuan last_name: Liang - first_name: Simon full_name: Hippenmeyer, Simon id: 37B36620-F248-11E8-B48F-1D18A9856A87 last_name: Hippenmeyer orcid: 0000-0003-2279-1061 - first_name: H. full_name: Ghashghaei, H. last_name: Ghashghaei citation: ama: Liang H, Hippenmeyer S, Ghashghaei H. A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors. Biology open. 2012;1(12):1200-1203. doi:10.1242/bio.20122287 apa: Liang, H., Hippenmeyer, S., & Ghashghaei, H. (2012). A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors. Biology Open. The Company of Biologists. https://doi.org/10.1242/bio.20122287 chicago: Liang, Huixuan, Simon Hippenmeyer, and H. Ghashghaei. “A Nestin-Cre Transgenic Mouse Is Insufficient for Recombination in Early Embryonic Neural Progenitors.” Biology Open. The Company of Biologists, 2012. https://doi.org/10.1242/bio.20122287. ieee: H. Liang, S. Hippenmeyer, and H. Ghashghaei, “A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors,” Biology open, vol. 1, no. 12. The Company of Biologists, pp. 1200–1203, 2012. ista: Liang H, Hippenmeyer S, Ghashghaei H. 2012. A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors. Biology open. 1(12), 1200–1203. mla: Liang, Huixuan, et al. “A Nestin-Cre Transgenic Mouse Is Insufficient for Recombination in Early Embryonic Neural Progenitors.” Biology Open, vol. 1, no. 12, The Company of Biologists, 2012, pp. 1200–03, doi:10.1242/bio.20122287. short: H. Liang, S. Hippenmeyer, H. Ghashghaei, Biology Open 1 (2012) 1200–1203. date_created: 2018-12-11T11:56:38Z date_published: 2012-12-15T00:00:00Z date_updated: 2021-01-12T06:56:23Z day: '15' ddc: - '576' department: - _id: SiHi doi: 10.1242/bio.20122287 file: - access_level: open_access checksum: 605a1800b81227848c361fd6ba7d22ba content_type: application/pdf creator: system date_created: 2018-12-12T10:13:09Z date_updated: 2020-07-14T12:45:35Z file_id: '4990' file_name: IST-2015-387-v1+1_1200.full.pdf file_size: 726695 relation: main_file file_date_updated: 2020-07-14T12:45:35Z has_accepted_license: '1' intvolume: ' 1' issue: '12' language: - iso: eng license: https://creativecommons.org/licenses/by-nc-sa/4.0/ month: '12' oa: 1 oa_version: Published Version page: 1200 - 1203 publication: Biology open publication_status: published publisher: The Company of Biologists publist_id: '4682' pubrep_id: '387' quality_controlled: '1' scopus_import: 1 status: public title: A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors tmp: image: /images/cc_by_nc_sa.png legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) short: CC BY-NC-SA (4.0) type: journal_article user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87 volume: 1 year: '2012' ... --- _id: '2267' abstract: - lang: eng text: 'Capturing real-world objects with laser-scanning technology has become an everyday task. Recently, the acquisition of dynamic scenes at interactive frame rates has become feasible. A high-quality visualization of the resulting point cloud stream would require a per-frame reconstruction of object surfaces. Unfortunately, reconstruction computations are still too time-consuming to be applied interactively. In this paper we present a local surface reconstruction and visualization technique that provides interactive feedback for reasonably sized point clouds, while achieving high image quality. Our method is performed entirely on the GPU and in screen pace, exploiting the efficiency of the common rasterization pipeline. The approach is very general, as no assumption is made about point connectivity or sampling density. This naturally allows combining the outputs of multiple scanners in a single visualization, which is useful for many virtual and augmented reality applications. ' author: - first_name: Reinhold full_name: Preiner, Reinhold last_name: Preiner - first_name: Stefan full_name: Jeschke, Stefan id: 44D6411A-F248-11E8-B48F-1D18A9856A87 last_name: Jeschke - first_name: Michael full_name: Wimmer, Michael last_name: Wimmer citation: ama: 'Preiner R, Jeschke S, Wimmer M. Auto splats: Dynamic point cloud visualization on the GPU. In: Eurographics Association; 2012:139-148. doi:10.2312/EGPGV/EGPGV12/139-148' apa: 'Preiner, R., Jeschke, S., & Wimmer, M. (2012). Auto splats: Dynamic point cloud visualization on the GPU (pp. 139–148). Presented at the EGPGV: Eurographics Symposium on Parallel Graphics and Visualization, Calgari, Italy: Eurographics Association. https://doi.org/10.2312/EGPGV/EGPGV12/139-148' chicago: 'Preiner, Reinhold, Stefan Jeschke, and Michael Wimmer. “Auto Splats: Dynamic Point Cloud Visualization on the GPU,” 139–48. Eurographics Association, 2012. https://doi.org/10.2312/EGPGV/EGPGV12/139-148.' ieee: 'R. Preiner, S. Jeschke, and M. Wimmer, “Auto splats: Dynamic point cloud visualization on the GPU,” presented at the EGPGV: Eurographics Symposium on Parallel Graphics and Visualization, Calgari, Italy, 2012, pp. 139–148.' ista: 'Preiner R, Jeschke S, Wimmer M. 2012. Auto splats: Dynamic point cloud visualization on the GPU. EGPGV: Eurographics Symposium on Parallel Graphics and Visualization, 139–148.' mla: 'Preiner, Reinhold, et al. Auto Splats: Dynamic Point Cloud Visualization on the GPU. Eurographics Association, 2012, pp. 139–48, doi:10.2312/EGPGV/EGPGV12/139-148.' short: R. Preiner, S. Jeschke, M. Wimmer, in:, Eurographics Association, 2012, pp. 139–148. conference: end_date: 2012-05-14 location: Calgari, Italy name: 'EGPGV: Eurographics Symposium on Parallel Graphics and Visualization' start_date: 2012-05-13 date_created: 2018-12-11T11:56:40Z date_published: 2012-05-13T00:00:00Z date_updated: 2021-01-12T06:56:24Z day: '13' ddc: - '000' doi: 10.2312/EGPGV/EGPGV12/139-148 extern: '1' file: - access_level: open_access checksum: 5495bb6ee8662cd401b34afb04dfb40f content_type: application/pdf creator: system date_created: 2018-12-12T10:11:13Z date_updated: 2020-07-14T12:45:35Z file_id: '4866' file_name: IST-2016-572-v1+1_preiner_2012_AS-draft.pdf file_size: 14903860 relation: main_file file_date_updated: 2020-07-14T12:45:35Z has_accepted_license: '1' language: - iso: eng month: '05' oa: 1 oa_version: Submitted Version page: 139 - 148 publication_status: published publisher: Eurographics Association publist_id: '4677' pubrep_id: '572' quality_controlled: '1' status: public title: 'Auto splats: Dynamic point cloud visualization on the GPU' type: conference user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87 year: '2012' ... --- _id: '2262' abstract: - lang: eng text: 'Mosaic Analysis with Double Markers (MADM) is a method for generating genetically mosaic mice, in which sibling mutant and wild-type cells are labeled with different fluorescent markers. It is a powerful tool that enables analysis of gene function at the single cell level in vivo. It requires transgenic cassettes to be located between the centromere and the mutation in the gene of interest on the same chromosome. Here we compare procedures for introduction of MADM cassettes into new loci in the mouse genome, and describe new approaches for expanding the utility of MADM. We show that: 1) Targeted homologous recombination outperforms random transgenesis in generation of reliably expressed MADM cassettes, 2) MADM cassettes in new genomic loci need to be validated for biallelic and ubiquitous expression, 3) Recombination between MADM cassettes on different chromosomes can be used to study reciprocal chromosomal deletions/duplications, and 4) MADM can be modified to permit transgene expression by combining it with a binary expression system. The advances described in this study expand current, and enable new and more versatile applications of MADM.' acknowledgement: This work was supported by a National Institutes of Health grant to LL (R01-NS050835). BT was a Damon Runyon Fellow and was supported by the Damon Runyon Cancer Research Foundation Grant DRG-1819-04. KM was supported by the Japan Society for the Promotion of Science program for Research Abroad and Human Frontier Science Program Organization (LT00300/2007-L). SH was supported by postdoctoral fellowships from the European Molecular Biology Organization (ALTF 851-2005), Human Frontier Science Program Organization (LT00805/2006-L), and Swiss National Science Foundation (PA00P3_124160 and PA00P3_136482). HZ is a Pew Scholar in Biomedical Sciences, supported by The Pew Charitable Trusts. LL is an investigator of the Howard Hughes Medical Institute. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. author: - first_name: Bosiljka full_name: Tasic, Bosiljka last_name: Tasic - first_name: Kazunari full_name: Miyamichi, Kazunari last_name: Miyamichi - first_name: Simon full_name: Simon Hippenmeyer id: 37B36620-F248-11E8-B48F-1D18A9856A87 last_name: Hippenmeyer orcid: 0000-0003-2279-1061 - first_name: Vardhan full_name: Dani, Vardhan S. last_name: Dani - first_name: H. full_name: Zeng, H. last_name: Zeng - first_name: William full_name: Joo, William last_name: Joo - first_name: Hui full_name: Zong, Hui last_name: Zong - first_name: Yanru full_name: Chen-Tsai, Yanru last_name: Chen Tsai - first_name: Liqun full_name: Luo, Liqun last_name: Luo citation: ama: Tasic B, Miyamichi K, Hippenmeyer S, et al. Extensions of MADM (Mosaic Analysis with Double Markers) in Mice . PLoS One. 2012;7(3). doi:10.1371/journal.pone.0033332 apa: Tasic, B., Miyamichi, K., Hippenmeyer, S., Dani, V., Zeng, H., Joo, W., … Luo, L. (2012). Extensions of MADM (Mosaic Analysis with Double Markers) in Mice . PLoS One. Public Library of Science. https://doi.org/10.1371/journal.pone.0033332 chicago: Tasic, Bosiljka, Kazunari Miyamichi, Simon Hippenmeyer, Vardhan Dani, H. Zeng, William Joo, Hui Zong, Yanru Chen Tsai, and Liqun Luo. “Extensions of MADM (Mosaic Analysis with Double Markers) in Mice .” PLoS One. Public Library of Science, 2012. https://doi.org/10.1371/journal.pone.0033332. ieee: B. Tasic et al., “Extensions of MADM (Mosaic Analysis with Double Markers) in Mice ,” PLoS One, vol. 7, no. 3. Public Library of Science, 2012. ista: Tasic B, Miyamichi K, Hippenmeyer S, Dani V, Zeng H, Joo W, Zong H, Chen Tsai Y, Luo L. 2012. Extensions of MADM (Mosaic Analysis with Double Markers) in Mice . PLoS One. 7(3). mla: Tasic, Bosiljka, et al. “Extensions of MADM (Mosaic Analysis with Double Markers) in Mice .” PLoS One, vol. 7, no. 3, Public Library of Science, 2012, doi:10.1371/journal.pone.0033332. short: B. Tasic, K. Miyamichi, S. Hippenmeyer, V. Dani, H. Zeng, W. Joo, H. Zong, Y. Chen Tsai, L. Luo, PLoS One 7 (2012). date_created: 2018-12-11T11:56:38Z date_published: 2012-03-27T00:00:00Z date_updated: 2021-01-12T06:56:22Z day: '27' doi: 10.1371/journal.pone.0033332 extern: 1 intvolume: ' 7' issue: '3' month: '03' publication: PLoS One publication_status: published publisher: Public Library of Science publist_id: '4683' quality_controlled: 0 status: public title: 'Extensions of MADM (Mosaic Analysis with Double Markers) in Mice ' tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article volume: 7 year: '2012' ... --- _id: '2268' abstract: - lang: eng text: 'This paper presents an analytic formulation for anti-aliased sampling of 2D polygons and 3D polyhedra. Our framework allows the exact evaluation of the convolution integral with a linear function defined on the polytopes. The filter is a spherically symmetric polynomial of any order, supporting approximations to refined variants such as the Mitchell-Netravali filter family. This enables high-quality rasterization of triangles and tetrahedra with linearly interpolated vertex values to regular and non-regular grids. A closed form solution of the convolution is presented and an efficient implementation on the GPU using DirectX and CUDA C is described. ' acknowledgement: |- Funding was provided by the FWF grant P20768-N13. We want to thank the reviewers for their insightful and helpful remarks, Hang Si for making available TetGen and Stefan Bruckner for VolumeShop. alternative_title: - Computer Graphics Forum author: - first_name: Thomas full_name: Thomas Auzinger id: 4718F954-F248-11E8-B48F-1D18A9856A87 last_name: Auzinger orcid: 0000-0002-1546-3265 - first_name: Michael full_name: Guthe, Michael last_name: Guthe - first_name: Stefan full_name: Stefan Jeschke id: 44D6411A-F248-11E8-B48F-1D18A9856A87 last_name: Jeschke citation: ama: 'Auzinger T, Guthe M, Jeschke S. Analytic anti-aliasing of linear functions on polytopes. In: Vol 31. Wiley-Blackwell; 2012:335-344. doi:http://dx.doi.org/10.1111/j.1467-8659.2012.03012.x' apa: 'Auzinger, T., Guthe, M., & Jeschke, S. (2012). Analytic anti-aliasing of linear functions on polytopes (Vol. 31, pp. 335–344). Presented at the EUROGRAPHICS: European Association for Computer Graphics, Wiley-Blackwell. http://dx.doi.org/10.1111/j.1467-8659.2012.03012.x' chicago: Auzinger, Thomas, Michael Guthe, and Stefan Jeschke. “Analytic Anti-Aliasing of Linear Functions on Polytopes,” 31:335–44. Wiley-Blackwell, 2012. http://dx.doi.org/10.1111/j.1467-8659.2012.03012.x. ieee: 'T. Auzinger, M. Guthe, and S. Jeschke, “Analytic anti-aliasing of linear functions on polytopes,” presented at the EUROGRAPHICS: European Association for Computer Graphics, 2012, vol. 31, no. 121, pp. 335–344.' ista: 'Auzinger T, Guthe M, Jeschke S. 2012. Analytic anti-aliasing of linear functions on polytopes. EUROGRAPHICS: European Association for Computer Graphics, Computer Graphics Forum, vol. 31, 335–344.' mla: Auzinger, Thomas, et al. Analytic Anti-Aliasing of Linear Functions on Polytopes. Vol. 31, no. 121, Wiley-Blackwell, 2012, pp. 335–44, doi:http://dx.doi.org/10.1111/j.1467-8659.2012.03012.x. short: T. Auzinger, M. Guthe, S. Jeschke, in:, Wiley-Blackwell, 2012, pp. 335–344. conference: name: 'EUROGRAPHICS: European Association for Computer Graphics' date_created: 2018-12-11T11:56:40Z date_published: 2012-05-13T00:00:00Z date_updated: 2021-01-12T06:56:24Z day: '13' doi: http://dx.doi.org/10.1111/j.1467-8659.2012.03012.x extern: 1 intvolume: ' 31' issue: 121 main_file_link: - open_access: '1' url: https://www.cg.tuwien.ac.at/research/publications/2012/Auzinger_2012_AAA/ month: '05' oa: 1 page: 335 - 344 publication_status: published publisher: Wiley-Blackwell publist_id: '4676' quality_controlled: 0 status: public title: Analytic anti-aliasing of linear functions on polytopes type: conference volume: 31 year: '2012' ... --- _id: '2302' abstract: - lang: eng text: 'We introduce propagation models (PMs), a formalism able to express several kinds of equations that describe the behavior of biochemical reaction networks. Furthermore, we introduce the propagation abstract data type (PADT), which separates concerns regarding different numerical algorithms for the transient analysis of biochemical reaction networks from concerns regarding their implementation, thus allowing for portable and efficient solutions. The state of a propagation abstract data type is given by a vector that assigns mass values to a set of nodes, and its (next) operator propagates mass values through this set of nodes. We propose an approximate implementation of the (next) operator, based on threshold abstraction, which propagates only "significant" mass values and thus achieves a compromise between efficiency and accuracy. Finally, we give three use cases for propagation models: the chemical master equation (CME), the reaction rate equation (RRE), and a hybrid method that combines these two equations. These three applications use propagation models in order to propagate probabilities and/or expected values and variances of the model''s variables.' author: - first_name: Thomas A full_name: Henzinger, Thomas A id: 40876CD8-F248-11E8-B48F-1D18A9856A87 last_name: Henzinger orcid: 0000−0002−2985−7724 - first_name: Maria full_name: Mateescu, Maria id: 3B43276C-F248-11E8-B48F-1D18A9856A87 last_name: Mateescu citation: ama: Henzinger TA, Mateescu M. The propagation approach for computing biochemical reaction networks. IEEE ACM Transactions on Computational Biology and Bioinformatics. 2012;10(2):310-322. doi:10.1109/TCBB.2012.91 apa: Henzinger, T. A., & Mateescu, M. (2012). The propagation approach for computing biochemical reaction networks. IEEE ACM Transactions on Computational Biology and Bioinformatics. IEEE. https://doi.org/10.1109/TCBB.2012.91 chicago: Henzinger, Thomas A, and Maria Mateescu. “The Propagation Approach for Computing Biochemical Reaction Networks.” IEEE ACM Transactions on Computational Biology and Bioinformatics. IEEE, 2012. https://doi.org/10.1109/TCBB.2012.91. ieee: T. A. Henzinger and M. Mateescu, “The propagation approach for computing biochemical reaction networks,” IEEE ACM Transactions on Computational Biology and Bioinformatics, vol. 10, no. 2. IEEE, pp. 310–322, 2012. ista: Henzinger TA, Mateescu M. 2012. The propagation approach for computing biochemical reaction networks. IEEE ACM Transactions on Computational Biology and Bioinformatics. 10(2), 310–322. mla: Henzinger, Thomas A., and Maria Mateescu. “The Propagation Approach for Computing Biochemical Reaction Networks.” IEEE ACM Transactions on Computational Biology and Bioinformatics, vol. 10, no. 2, IEEE, 2012, pp. 310–22, doi:10.1109/TCBB.2012.91. short: T.A. Henzinger, M. Mateescu, IEEE ACM Transactions on Computational Biology and Bioinformatics 10 (2012) 310–322. date_created: 2018-12-11T11:56:52Z date_published: 2012-07-03T00:00:00Z date_updated: 2021-01-12T06:56:38Z day: '03' department: - _id: ToHe - _id: CaGu doi: 10.1109/TCBB.2012.91 ec_funded: 1 external_id: pmid: - '22778152' intvolume: ' 10' issue: '2' language: - iso: eng month: '07' oa_version: None page: 310 - 322 pmid: 1 project: - _id: 25EE3708-B435-11E9-9278-68D0E5697425 call_identifier: FP7 grant_number: '267989' name: Quantitative Reactive Modeling publication: IEEE ACM Transactions on Computational Biology and Bioinformatics publication_status: published publisher: IEEE publist_id: '4625' quality_controlled: '1' scopus_import: 1 status: public title: The propagation approach for computing biochemical reaction networks type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 10 year: '2012' ... --- _id: '2313' abstract: - lang: eng text: The translation of "next-generation" sequencing directly to the clinic is still being assessed but has the potential for genetic diseases to reduce costs, advance accuracy, and point to unsuspected yet treatable conditions. To study its capability in the clinic, we performed whole-exome sequencing in 118 probands with a diagnosis of a pediatric-onset neurodevelopmental disease in which most known causes had been excluded. Twenty-two genes not previously identified as disease-causing were identified in this study (19% of cohort), further establishing exome sequencing as a useful tool for gene discovery. New genes identified included EXOC8 in Joubert syndrome and GFM2 in a patient with microcephaly, simplified gyral pattern, and insulin-dependent diabetes. Exome sequencing uncovered 10 probands (8% of cohort) with mutations in genes known to cause a disease different from the initial diagnosis. Upon further medical evaluation, these mutations were found to account for each proband's disease, leading to a change in diagnosis, some of which led to changes in patient management. Our data provide proof of principle that genomic strategies are useful in clarifying diagnosis in a proportion of patients with neurodevelopmental disorders. author: - first_name: Tracy full_name: Dixon-Salazar, Tracy J last_name: Dixon Salazar - first_name: Jennifer full_name: Silhavy, Jennifer L last_name: Silhavy - first_name: Nitin full_name: Udpa, Nitin last_name: Udpa - first_name: Jana full_name: Schroth, Jana last_name: Schroth - first_name: Stephanie full_name: Bielas, Stephanie L last_name: Bielas - first_name: Ashleigh full_name: Schaffer, Ashleigh E last_name: Schaffer - first_name: Jesus full_name: Olvera, Jesus last_name: Olvera - first_name: Vineet full_name: Bafna, Vineet K last_name: Bafna - first_name: Maha full_name: Zaki, Maha S last_name: Zaki - first_name: Ghada full_name: Abdel-Salam, Ghada M last_name: Abdel Salam - first_name: Lobna full_name: Mansour, Lobna A last_name: Mansour - first_name: Laila full_name: Selim, Laila A last_name: Selim - first_name: Sawsan full_name: Abdel-Hadi, Sawsan S last_name: Abdel Hadi - first_name: Naima full_name: Marzouki, Naima last_name: Marzouki - first_name: Tawfeg full_name: Ben-Omran, Tawfeg I last_name: Ben Omran - first_name: Nouriya full_name: Al-Saana, Nouriya A last_name: Al Saana - first_name: Fatma full_name: Sönmez, Fatma M last_name: Sönmez - first_name: Figen full_name: Celep, Figen last_name: Celep - first_name: Matloob full_name: Azam, Matloob last_name: Azam - first_name: Kiley full_name: Hill, Kiley J last_name: Hill - first_name: Adrienne full_name: Collazo, Adrienne last_name: Collazo - first_name: Ali full_name: Fenstermaker, Ali G last_name: Fenstermaker - first_name: Gaia full_name: Gaia Novarino id: 3E57A680-F248-11E8-B48F-1D18A9856A87 last_name: Novarino orcid: 0000-0002-7673-7178 - first_name: Naiara full_name: Akizu, Naiara last_name: Akizu - first_name: Kiran full_name: Garimella, Kiran V last_name: Garimella - first_name: Carrie full_name: Sougnez, Carrie L last_name: Sougnez - first_name: Carsten full_name: Russ, Carsten last_name: Russ - first_name: Stacey full_name: Gabriel, Stacey B last_name: Gabriel - first_name: Joseph full_name: Gleeson, Joseph G last_name: Gleeson citation: ama: Dixon Salazar T, Silhavy J, Udpa N, et al. Exome sequencing can improve diagnosis and alter patient management. Science Translational Medicine. 2012;4(138). doi:10.1126/scitranslmed.3003544 apa: Dixon Salazar, T., Silhavy, J., Udpa, N., Schroth, J., Bielas, S., Schaffer, A., … Gleeson, J. (2012). Exome sequencing can improve diagnosis and alter patient management. Science Translational Medicine. American Association for the Advancement of Science. https://doi.org/10.1126/scitranslmed.3003544 chicago: Dixon Salazar, Tracy, Jennifer Silhavy, Nitin Udpa, Jana Schroth, Stephanie Bielas, Ashleigh Schaffer, Jesus Olvera, et al. “Exome Sequencing Can Improve Diagnosis and Alter Patient Management.” Science Translational Medicine. American Association for the Advancement of Science, 2012. https://doi.org/10.1126/scitranslmed.3003544. ieee: T. Dixon Salazar et al., “Exome sequencing can improve diagnosis and alter patient management,” Science Translational Medicine, vol. 4, no. 138. American Association for the Advancement of Science, 2012. ista: Dixon Salazar T, Silhavy J, Udpa N, Schroth J, Bielas S, Schaffer A, Olvera J, Bafna V, Zaki M, Abdel Salam G, Mansour L, Selim L, Abdel Hadi S, Marzouki N, Ben Omran T, Al Saana N, Sönmez F, Celep F, Azam M, Hill K, Collazo A, Fenstermaker A, Novarino G, Akizu N, Garimella K, Sougnez C, Russ C, Gabriel S, Gleeson J. 2012. Exome sequencing can improve diagnosis and alter patient management. Science Translational Medicine. 4(138). mla: Dixon Salazar, Tracy, et al. “Exome Sequencing Can Improve Diagnosis and Alter Patient Management.” Science Translational Medicine, vol. 4, no. 138, American Association for the Advancement of Science, 2012, doi:10.1126/scitranslmed.3003544. short: T. Dixon Salazar, J. Silhavy, N. Udpa, J. Schroth, S. Bielas, A. Schaffer, J. Olvera, V. Bafna, M. Zaki, G. Abdel Salam, L. Mansour, L. Selim, S. Abdel Hadi, N. Marzouki, T. Ben Omran, N. Al Saana, F. Sönmez, F. Celep, M. Azam, K. Hill, A. Collazo, A. Fenstermaker, G. Novarino, N. Akizu, K. Garimella, C. Sougnez, C. Russ, S. Gabriel, J. Gleeson, Science Translational Medicine 4 (2012). date_created: 2018-12-11T11:56:56Z date_published: 2012-06-13T00:00:00Z date_updated: 2021-01-12T06:56:43Z day: '13' doi: 10.1126/scitranslmed.3003544 extern: 1 intvolume: ' 4' issue: '138' month: '06' publication: Science Translational Medicine publication_status: published publisher: American Association for the Advancement of Science publist_id: '4614' quality_controlled: 0 status: public title: Exome sequencing can improve diagnosis and alter patient management type: journal_article volume: 4 year: '2012' ... --- _id: '2314' abstract: - lang: eng text: Autism spectrum disorders are a genetically heterogeneous constellation of syndromes characterized by impairments in reciprocal social interaction. Available somatic treatments have limited efficacy. We have identified inactivating mutations in the gene BCKDK (Branched Chain Ketoacid Dehydrogenase Kinase) in consanguineous families with autism, epilepsy, and intellectual disability. The encoded protein is responsible for phosphorylation-mediated inactivation of the E1α subunit of branched-chain ketoacid dehydrogenase (BCKDH). Patients with homozygous BCKDK mutations display reductions in BCKDK messenger RNA and protein, E1α phosphorylation, and plasma branched-chain amino acids. Bckdk knockout mice show abnormal brain amino acid profiles and neurobehavioral deficits that respond to dietary supplementation. Thus, autism presenting with intellectual disability and epilepsy caused by BCKDK mutations represents a potentially treatable syndrome. author: - first_name: Gaia full_name: Gaia Novarino id: 3E57A680-F248-11E8-B48F-1D18A9856A87 last_name: Novarino orcid: 0000-0002-7673-7178 - first_name: Paul full_name: El-Fishawy, Paul last_name: El Fishawy - first_name: Hülya full_name: Kayserili, Hülya last_name: Kayserili - first_name: Nagwa full_name: Meguid, Nagwa A last_name: Meguid - first_name: Eric full_name: Scott, Eric M last_name: Scott - first_name: Jana full_name: Schroth, Jana last_name: Schroth - first_name: Jennifer full_name: Silhavy, Jennifer L last_name: Silhavy - first_name: Majdi full_name: Kara, Majdi last_name: Kara - first_name: Rehab full_name: Khalil, Rehab O last_name: Khalil - first_name: Tawfeg full_name: Ben-Omran, Tawfeg I last_name: Ben Omran - first_name: Adife full_name: Ercan-Sencicek, Adife G last_name: Ercan Sencicek - first_name: Adel full_name: Hashish, Adel F last_name: Hashish - first_name: Stephan full_name: Sanders, Stephan J last_name: Sanders - first_name: Abha full_name: Gupta, Abha R last_name: Gupta - first_name: Hebatalla full_name: Hashem, Hebatalla S last_name: Hashem - first_name: Dietrich full_name: Matern, Dietrich last_name: Matern - first_name: Stacey full_name: Gabriel, Stacey B last_name: Gabriel - first_name: Lawrence full_name: Sweetman, Lawrence last_name: Sweetman - first_name: Yasmeen full_name: Rahimi, Yasmeen last_name: Rahimi - first_name: Robert full_name: Harris, Robert A last_name: Harris - first_name: Matthew full_name: State, Matthew W last_name: State - first_name: Joseph full_name: Gleeson, Joseph G last_name: Gleeson citation: ama: Novarino G, El Fishawy P, Kayserili H, et al. Mutations in BCKD-kinase lead to a potentially treatable form of autism with epilepsy. Science. 2012;338(6105):394-397. doi:10.1126/science.1224631 apa: Novarino, G., El Fishawy, P., Kayserili, H., Meguid, N., Scott, E., Schroth, J., … Gleeson, J. (2012). Mutations in BCKD-kinase lead to a potentially treatable form of autism with epilepsy. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1224631 chicago: Novarino, Gaia, Paul El Fishawy, Hülya Kayserili, Nagwa Meguid, Eric Scott, Jana Schroth, Jennifer Silhavy, et al. “Mutations in BCKD-Kinase Lead to a Potentially Treatable Form of Autism with Epilepsy.” Science. American Association for the Advancement of Science, 2012. https://doi.org/10.1126/science.1224631. ieee: G. Novarino et al., “Mutations in BCKD-kinase lead to a potentially treatable form of autism with epilepsy,” Science, vol. 338, no. 6105. American Association for the Advancement of Science, pp. 394–397, 2012. ista: Novarino G, El Fishawy P, Kayserili H, Meguid N, Scott E, Schroth J, Silhavy J, Kara M, Khalil R, Ben Omran T, Ercan Sencicek A, Hashish A, Sanders S, Gupta A, Hashem H, Matern D, Gabriel S, Sweetman L, Rahimi Y, Harris R, State M, Gleeson J. 2012. Mutations in BCKD-kinase lead to a potentially treatable form of autism with epilepsy. Science. 338(6105), 394–397. mla: Novarino, Gaia, et al. “Mutations in BCKD-Kinase Lead to a Potentially Treatable Form of Autism with Epilepsy.” Science, vol. 338, no. 6105, American Association for the Advancement of Science, 2012, pp. 394–97, doi:10.1126/science.1224631. short: G. Novarino, P. El Fishawy, H. Kayserili, N. Meguid, E. Scott, J. Schroth, J. Silhavy, M. Kara, R. Khalil, T. Ben Omran, A. Ercan Sencicek, A. Hashish, S. Sanders, A. Gupta, H. Hashem, D. Matern, S. Gabriel, L. Sweetman, Y. Rahimi, R. Harris, M. State, J. Gleeson, Science 338 (2012) 394–397. date_created: 2018-12-11T11:56:56Z date_published: 2012-10-19T00:00:00Z date_updated: 2021-01-12T06:56:43Z day: '19' doi: 10.1126/science.1224631 extern: 1 intvolume: ' 338' issue: '6105' month: '10' page: 394 - 397 publication: Science publication_status: published publisher: American Association for the Advancement of Science publist_id: '4613' quality_controlled: 0 status: public title: Mutations in BCKD-kinase lead to a potentially treatable form of autism with epilepsy type: journal_article volume: 338 year: '2012' ... --- _id: '2318' abstract: - lang: eng text: 'We show that bosons interacting via pair potentials with negative scattering length form bound states for a suitable number of particles. In other words, the absence of many-particle bound states of any kind implies the non-negativity of the scattering length of the interaction potential. ' acknowledgement: 'Partial financial support by NSERC ' author: - first_name: Robert full_name: Seiringer, Robert id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 citation: ama: Seiringer R. Absence of bound states implies non-negativity of the scattering length. Journal of Spectral Theory. 2012;2(3):321-328. doi:10.4171/JST/31 apa: Seiringer, R. (2012). Absence of bound states implies non-negativity of the scattering length. Journal of Spectral Theory. European Mathematical Society. https://doi.org/10.4171/JST/31 chicago: Seiringer, Robert. “Absence of Bound States Implies Non-Negativity of the Scattering Length.” Journal of Spectral Theory. European Mathematical Society, 2012. https://doi.org/10.4171/JST/31. ieee: R. Seiringer, “Absence of bound states implies non-negativity of the scattering length,” Journal of Spectral Theory, vol. 2, no. 3. European Mathematical Society, pp. 321–328, 2012. ista: Seiringer R. 2012. Absence of bound states implies non-negativity of the scattering length. Journal of Spectral Theory. 2(3), 321–328. mla: Seiringer, Robert. “Absence of Bound States Implies Non-Negativity of the Scattering Length.” Journal of Spectral Theory, vol. 2, no. 3, European Mathematical Society, 2012, pp. 321–28, doi:10.4171/JST/31. short: R. Seiringer, Journal of Spectral Theory 2 (2012) 321–328. date_created: 2018-12-11T11:56:58Z date_published: 2012-06-24T00:00:00Z date_updated: 2021-01-12T06:56:44Z day: '24' department: - _id: RoSe doi: 10.4171/JST/31 intvolume: ' 2' issue: '3' language: - iso: eng main_file_link: - open_access: '1' url: http://arxiv.org/abs/1204.0435 month: '06' oa: 1 oa_version: Preprint page: 321-328 publication: Journal of Spectral Theory publication_status: published publisher: European Mathematical Society publist_id: '4609' quality_controlled: '1' status: public title: Absence of bound states implies non-negativity of the scattering length type: journal_article user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87 volume: 2 year: '2012' ... --- _id: '2317' abstract: - lang: eng text: 'We present a summary of our recent rigorous derivation of the celebrated Ginzburg-Landau (GL) theory, starting from the microscopic Bardeen-Cooper-Schrieffer (BCS) model. Close to the critical temperature, GL arises as an effective theory on the macroscopic scale. The relevant scaling limit is semiclassical in nature, and semiclassical analysis, with minimal regularity assumptions, plays an important part in our proof. ' author: - first_name: Rupert full_name: Frank, Rupert L last_name: Frank - first_name: Christian full_name: Hainzl, Christian last_name: Hainzl - first_name: Robert full_name: Robert Seiringer id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 - first_name: Jan full_name: Solovej, Jan P last_name: Solovej citation: ama: 'Frank R, Hainzl C, Seiringer R, Solovej J. Microscopic derivation of the Ginzburg-Landau model. In: World Scientific Publishing; 2012:575-583. doi:10.1142/9789814449243_0060' apa: 'Frank, R., Hainzl, C., Seiringer, R., & Solovej, J. (2012). Microscopic derivation of the Ginzburg-Landau model (pp. 575–583). Presented at the ICMP: International Congress on Mathematical Physics, World Scientific Publishing. https://doi.org/10.1142/9789814449243_0060' chicago: Frank, Rupert, Christian Hainzl, Robert Seiringer, and Jan Solovej. “Microscopic Derivation of the Ginzburg-Landau Model,” 575–83. World Scientific Publishing, 2012. https://doi.org/10.1142/9789814449243_0060. ieee: 'R. Frank, C. Hainzl, R. Seiringer, and J. Solovej, “Microscopic derivation of the Ginzburg-Landau model,” presented at the ICMP: International Congress on Mathematical Physics, 2012, pp. 575–583.' ista: 'Frank R, Hainzl C, Seiringer R, Solovej J. 2012. Microscopic derivation of the Ginzburg-Landau model. ICMP: International Congress on Mathematical Physics, 575–583.' mla: Frank, Rupert, et al. Microscopic Derivation of the Ginzburg-Landau Model. World Scientific Publishing, 2012, pp. 575–83, doi:10.1142/9789814449243_0060. short: R. Frank, C. Hainzl, R. Seiringer, J. Solovej, in:, World Scientific Publishing, 2012, pp. 575–583. conference: name: 'ICMP: International Congress on Mathematical Physics' date_created: 2018-12-11T11:56:57Z date_published: 2012-08-01T00:00:00Z date_updated: 2021-01-12T06:56:44Z day: '01' doi: 10.1142/9789814449243_0060 extern: 1 main_file_link: - open_access: '1' url: http://arxiv.org/abs/1209.1080 month: '08' oa: 1 page: 575 - 583 publication_status: published publisher: World Scientific Publishing publist_id: '4610' quality_controlled: 0 status: public title: Microscopic derivation of the Ginzburg-Landau model type: conference year: '2012' ... --- _id: '2316' abstract: - lang: eng text: 'We summarize our recent results on the ground state energy of multi-polaron systems. In particular, we discuss stability and existence of the thermodynamic limit, and we discuss the absence of binding in the case of large Coulomb repulsion and the corresponding binding-unbinding transition. We also consider the Pekar-Tomasevich approximation to the ground state energy and we study radial symmetry of the ground state density. ' author: - first_name: Rupert full_name: Frank, Rupert L last_name: Frank - first_name: Élliott full_name: Lieb, Élliott H last_name: Lieb - first_name: Robert full_name: Robert Seiringer id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 - first_name: Lawrence full_name: Thomas, Lawrence E last_name: Thomas citation: ama: 'Frank R, Lieb É, Seiringer R, Thomas L. Ground state properties of multi-polaron systems. In: World Scientific Publishing; 2012:477-485. doi:10.1142/9789814449243_0045' apa: 'Frank, R., Lieb, É., Seiringer, R., & Thomas, L. (2012). Ground state properties of multi-polaron systems (pp. 477–485). Presented at the ICMP: International Congress on Mathematical Physics, World Scientific Publishing. https://doi.org/10.1142/9789814449243_0045' chicago: Frank, Rupert, Élliott Lieb, Robert Seiringer, and Lawrence Thomas. “Ground State Properties of Multi-Polaron Systems,” 477–85. World Scientific Publishing, 2012. https://doi.org/10.1142/9789814449243_0045. ieee: 'R. Frank, É. Lieb, R. Seiringer, and L. Thomas, “Ground state properties of multi-polaron systems,” presented at the ICMP: International Congress on Mathematical Physics, 2012, pp. 477–485.' ista: 'Frank R, Lieb É, Seiringer R, Thomas L. 2012. Ground state properties of multi-polaron systems. ICMP: International Congress on Mathematical Physics, 477–485.' mla: Frank, Rupert, et al. Ground State Properties of Multi-Polaron Systems. World Scientific Publishing, 2012, pp. 477–85, doi:10.1142/9789814449243_0045. short: R. Frank, É. Lieb, R. Seiringer, L. Thomas, in:, World Scientific Publishing, 2012, pp. 477–485. conference: name: 'ICMP: International Congress on Mathematical Physics' date_created: 2018-12-11T11:56:57Z date_published: 2012-08-01T00:00:00Z date_updated: 2021-01-12T06:56:44Z day: '01' doi: 10.1142/9789814449243_0045 extern: 1 main_file_link: - open_access: '1' url: http://arxiv.org/abs/1209.3717 month: '08' oa: 1 page: 477 - 485 publication_status: published publisher: World Scientific Publishing publist_id: '4611' quality_controlled: 0 status: public title: Ground state properties of multi-polaron systems type: conference year: '2012' ... --- _id: '237' abstract: - lang: eng text: The Manin conjecture is established for Châtelet surfaces over Q aris-ing as minimal proper smooth models of the surface Y 2 + Z 2 = f(X) in A 3 Q, where f ∈ Z[X] is a totally reducible polynomial of degree 3 without repeated roots. These surfaces do not satisfy weak approximation. acknowledgement: "EP/E053262/1\tEngineering and Physical Sciences Research Council" author: - first_name: Régis full_name: de la Bretèche, Régis last_name: De La Bretèche - first_name: Timothy D full_name: Timothy Browning id: 35827D50-F248-11E8-B48F-1D18A9856A87 last_name: Browning orcid: 0000-0002-8314-0177 - first_name: Emmanuel full_name: Peyre, Emmanuel last_name: Peyre citation: ama: De La Bretèche R, Browning TD, Peyre E. On Manin’s conjecture for a family of Châtelet surfaces. Annals of Mathematics. 2012;175(1):297-343. doi:10.4007/annals.2012.175.1.8 apa: De La Bretèche, R., Browning, T. D., & Peyre, E. (2012). On Manin’s conjecture for a family of Châtelet surfaces. Annals of Mathematics. Princeton University Press. https://doi.org/10.4007/annals.2012.175.1.8 chicago: De La Bretèche, Régis, Timothy D Browning, and Emmanuel Peyre. “On Manin’s Conjecture for a Family of Châtelet Surfaces.” Annals of Mathematics. Princeton University Press, 2012. https://doi.org/10.4007/annals.2012.175.1.8. ieee: R. De La Bretèche, T. D. Browning, and E. Peyre, “On Manin’s conjecture for a family of Châtelet surfaces,” Annals of Mathematics, vol. 175, no. 1. Princeton University Press, pp. 297–343, 2012. ista: De La Bretèche R, Browning TD, Peyre E. 2012. On Manin’s conjecture for a family of Châtelet surfaces. Annals of Mathematics. 175(1), 297–343. mla: De La Bretèche, Régis, et al. “On Manin’s Conjecture for a Family of Châtelet Surfaces.” Annals of Mathematics, vol. 175, no. 1, Princeton University Press, 2012, pp. 297–343, doi:10.4007/annals.2012.175.1.8. short: R. De La Bretèche, T.D. Browning, E. Peyre, Annals of Mathematics 175 (2012) 297–343. date_created: 2018-12-11T11:45:22Z date_published: 2012-01-01T00:00:00Z date_updated: 2021-01-12T06:57:04Z day: '01' doi: 10.4007/annals.2012.175.1.8 extern: 1 intvolume: ' 175' issue: '1' month: '01' page: 297 - 343 publication: Annals of Mathematics publication_status: published publisher: Princeton University Press publist_id: '7667' quality_controlled: 0 status: public title: On Manin's conjecture for a family of Châtelet surfaces type: journal_article volume: 175 year: '2012' ...