[{"oa":1,"quality_controlled":"1","publisher":"American Physical Society","date_created":"2021-11-29T14:08:00Z","date_published":"2012-10-31T00:00:00Z","doi":"10.1103/physrevlett.109.188101","year":"2012","publication":"Physical Review Letters","day":"31","article_number":"188101","external_id":{"arxiv":["1206.3528"],"pmid":["23215334"]},"article_processing_charge":"No","author":[{"last_name":"Šarić","full_name":"Šarić, Anđela","orcid":"0000-0002-7854-2139","first_name":"Anđela","id":"bf63d406-f056-11eb-b41d-f263a6566d8b"},{"first_name":"Angelo","last_name":"Cacciuto","full_name":"Cacciuto, Angelo"}],"title":"Mechanism of membrane tube formation induced by adhesive nanocomponents","citation":{"mla":"Šarić, Anđela, and Angelo Cacciuto. “Mechanism of Membrane Tube Formation Induced by Adhesive Nanocomponents.” Physical Review Letters, vol. 109, no. 18, 188101, American Physical Society, 2012, doi:10.1103/physrevlett.109.188101.","ieee":"A. Šarić and A. Cacciuto, “Mechanism of membrane tube formation induced by adhesive nanocomponents,” Physical Review Letters, vol. 109, no. 18. American Physical Society, 2012.","short":"A. Šarić, A. Cacciuto, Physical Review Letters 109 (2012).","apa":"Šarić, A., & Cacciuto, A. (2012). Mechanism of membrane tube formation induced by adhesive nanocomponents. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.109.188101","ama":"Šarić A, Cacciuto A. Mechanism of membrane tube formation induced by adhesive nanocomponents. Physical Review Letters. 2012;109(18). doi:10.1103/physrevlett.109.188101","chicago":"Šarić, Anđela, and Angelo Cacciuto. “Mechanism of Membrane Tube Formation Induced by Adhesive Nanocomponents.” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/physrevlett.109.188101.","ista":"Šarić A, Cacciuto A. 2012. Mechanism of membrane tube formation induced by adhesive nanocomponents. Physical Review Letters. 109(18), 188101."},"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1206.3528"}],"scopus_import":"1","intvolume":" 109","month":"10","abstract":[{"lang":"eng","text":"We report numerical simulations of membrane tubulation driven by large colloidal particles. Using Monte Carlo simulations we study how the process depends on particle size and binding strength, and present accurate free energy calculations to sort out how tube formation compares with the competing budding process. We find that tube formation is a result of the collective behavior of the particles adhering on the surface, and it occurs for binding strengths that are smaller than those required for budding. We also find that long linear aggregates of particles forming on the membrane surface act as nucleation seeds for tubulation by lowering the free energy barrier associated to the process."}],"oa_version":"Preprint","pmid":1,"issue":"18","volume":109,"publication_status":"published","publication_identifier":{"issn":["0031-9007"],"eissn":["1079-7114"]},"language":[{"iso":"eng"}],"article_type":"original","type":"journal_article","keyword":["general physics and astronomy"],"status":"public","_id":"10387","date_updated":"2021-11-29T14:29:25Z","extern":"1"},{"doi":"10.1103/physrevlett.108.118101","date_published":"2012-03-14T00:00:00Z","date_created":"2021-11-29T14:30:05Z","year":"2012","day":"14","publication":"Physical Review Letters","quality_controlled":"1","publisher":"American Physical Society","oa":1,"acknowledgement":"This work was supported by the National Science Foundation under Career Grant No. DMR-0846426.\r\n","author":[{"first_name":"Anđela","id":"bf63d406-f056-11eb-b41d-f263a6566d8b","last_name":"Šarić","orcid":"0000-0002-7854-2139","full_name":"Šarić, Anđela"},{"last_name":"Cacciuto","full_name":"Cacciuto, Angelo","first_name":"Angelo"}],"external_id":{"arxiv":["1201.0036"],"pmid":["22540513"]},"article_processing_charge":"No","title":"Fluid membranes can drive linear aggregation of adsorbed spherical nanoparticles","citation":{"short":"A. Šarić, A. Cacciuto, Physical Review Letters 108 (2012).","ieee":"A. Šarić and A. Cacciuto, “Fluid membranes can drive linear aggregation of adsorbed spherical nanoparticles,” Physical Review Letters, vol. 108, no. 11. American Physical Society, 2012.","apa":"Šarić, A., & Cacciuto, A. (2012). Fluid membranes can drive linear aggregation of adsorbed spherical nanoparticles. Physical Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.108.118101","ama":"Šarić A, Cacciuto A. Fluid membranes can drive linear aggregation of adsorbed spherical nanoparticles. Physical Review Letters. 2012;108(11). doi:10.1103/physrevlett.108.118101","mla":"Šarić, Anđela, and Angelo Cacciuto. “Fluid Membranes Can Drive Linear Aggregation of Adsorbed Spherical Nanoparticles.” Physical Review Letters, vol. 108, no. 11, 118101, American Physical Society, 2012, doi:10.1103/physrevlett.108.118101.","ista":"Šarić A, Cacciuto A. 2012. Fluid membranes can drive linear aggregation of adsorbed spherical nanoparticles. Physical Review Letters. 108(11), 118101.","chicago":"Šarić, Anđela, and Angelo Cacciuto. “Fluid Membranes Can Drive Linear Aggregation of Adsorbed Spherical Nanoparticles.” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/physrevlett.108.118101."},"user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","article_number":"118101","volume":108,"issue":"11","publication_identifier":{"eissn":["1079-7114"],"issn":["0031-9007"]},"publication_status":"published","language":[{"iso":"eng"}],"scopus_import":"1","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1201.0036"}],"month":"03","intvolume":" 108","abstract":[{"text":"Using computer simulations, we show that lipid membranes can mediate linear aggregation of spherical nanoparticles binding to it for a wide range of biologically relevant bending rigidities. This result is in net contrast with the isotropic aggregation of nanoparticles on fluid interfaces or the expected clustering of isotropic insertions in biological membranes. We present a phase diagram indicating where linear aggregation is expected and compute explicitly the free-energy barriers associated with linear and isotropic aggregation. Finally, we provide simple scaling arguments to explain this phenomenology.","lang":"eng"}],"pmid":1,"oa_version":"Preprint","date_updated":"2021-11-29T15:12:13Z","extern":"1","type":"journal_article","article_type":"original","status":"public","keyword":["general physics and astronomy"],"_id":"10388"},{"status":"public","type":"journal_article","_id":"1055","title":"Bulla in the lung","publist_id":"6333","author":[{"full_name":"Erne, Barbara","last_name":"Erne","first_name":"Barbara"},{"last_name":"Graff","full_name":"Graff, Mareike","first_name":"Mareike"},{"first_name":"Wolfram","full_name":"Klemm, Wolfram","last_name":"Klemm"},{"first_name":"Johann G","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8559-3973","full_name":"Danzl, Johann G","last_name":"Danzl"},{"full_name":"Leschber, Gunda","last_name":"Leschber","first_name":"Gunda"}],"article_processing_charge":"No","extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","date_updated":"2021-01-12T06:47:57Z","citation":{"chicago":"Erne, Barbara, Mareike Graff, Wolfram Klemm, Johann G Danzl, and Gunda Leschber. “Bulla in the Lung.” The Lancet. Elsevier, 2012. https://doi.org/10.1016/S0140-6736(12)60690-4.","ista":"Erne B, Graff M, Klemm W, Danzl JG, Leschber G. 2012. Bulla in the lung. The Lancet. 380(9849).","mla":"Erne, Barbara, et al. “Bulla in the Lung.” The Lancet, vol. 380, no. 9849, Elsevier, 2012, doi:10.1016/S0140-6736(12)60690-4.","ieee":"B. Erne, M. Graff, W. Klemm, J. G. Danzl, and G. Leschber, “Bulla in the lung,” The Lancet, vol. 380, no. 9849. Elsevier, 2012.","short":"B. Erne, M. Graff, W. Klemm, J.G. Danzl, G. Leschber, The Lancet 380 (2012).","ama":"Erne B, Graff M, Klemm W, Danzl JG, Leschber G. Bulla in the lung. The Lancet. 2012;380(9849). doi:10.1016/S0140-6736(12)60690-4","apa":"Erne, B., Graff, M., Klemm, W., Danzl, J. G., & Leschber, G. (2012). Bulla in the lung. The Lancet. Elsevier. https://doi.org/10.1016/S0140-6736(12)60690-4"},"month":"10","intvolume":" 380","publisher":"Elsevier","oa_version":"None","acknowledgement":"We thank the interdisciplinary team at the ELK Berlin Chest Hospital.","abstract":[{"lang":"eng","text":"In July, 2011, a 32-year-old man presented with thoracic pain radiating to the left arm and upper dorsum, shortness of breath, and palpitations. He had had upper back tension for 6 months. Medical history was unremarkable apart from moderate nicotine use (two pack-years). Echocardiography, electrocardiography, and laboratory tests were unremarkable, excluding a cardiac event. CT of the chest after chest radiography showed a large bulla of 16 cm diameter in the right hemithorax (figure A). We did not detect radiological evidence of underlying pulmonary disease. The bulla wall was unremarkable and no structures were seen within the bulla."}],"doi":"10.1016/S0140-6736(12)60690-4","issue":"9849","volume":380,"date_published":"2012-10-01T00:00:00Z","date_created":"2018-12-11T11:49:54Z","day":"01","publication":"The Lancet","language":[{"iso":"eng"}],"year":"2012","publication_status":"published"},{"type":"journal_article","status":"public","_id":"1056","publist_id":"6334","author":[{"full_name":"Mark, Manfred","last_name":"Mark","first_name":"Manfred"},{"last_name":"Haller","full_name":"Haller, Elmar","first_name":"Elmar"},{"full_name":"Lauber, Katharina","last_name":"Lauber","first_name":"Katharina"},{"orcid":"0000-0001-8559-3973","full_name":"Danzl, Johann G","last_name":"Danzl","id":"42EFD3B6-F248-11E8-B48F-1D18A9856A87","first_name":"Johann G"},{"first_name":"Alexander","full_name":"Janisch, Alexander","last_name":"Janisch"},{"last_name":"Büchler","full_name":"Büchler, Hans","first_name":"Hans"},{"last_name":"Daley","full_name":"Daley, Andrew","first_name":"Andrew"},{"first_name":"Hanns","last_name":"Nägerl","full_name":"Nägerl, Hanns"}],"article_processing_charge":"No","external_id":{"arxiv":["1201.1008"]},"title":"Preparation and spectroscopy of a metastable mott-insulator state with attractive interactions","date_updated":"2021-01-12T06:47:58Z","citation":{"ista":"Mark M, Haller E, Lauber K, Danzl JG, Janisch A, Büchler H, Daley A, Nägerl H. 2012. Preparation and spectroscopy of a metastable mott-insulator state with attractive interactions. Physical Review Letters. 108(21).","chicago":"Mark, Manfred, Elmar Haller, Katharina Lauber, Johann G Danzl, Alexander Janisch, Hans Büchler, Andrew Daley, and Hanns Nägerl. “Preparation and Spectroscopy of a Metastable Mott-Insulator State with Attractive Interactions.” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/PhysRevLett.108.215302.","apa":"Mark, M., Haller, E., Lauber, K., Danzl, J. G., Janisch, A., Büchler, H., … Nägerl, H. (2012). Preparation and spectroscopy of a metastable mott-insulator state with attractive interactions. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.108.215302","ama":"Mark M, Haller E, Lauber K, et al. Preparation and spectroscopy of a metastable mott-insulator state with attractive interactions. Physical Review Letters. 2012;108(21). doi:10.1103/PhysRevLett.108.215302","short":"M. Mark, E. Haller, K. Lauber, J.G. Danzl, A. Janisch, H. Büchler, A. Daley, H. Nägerl, Physical Review Letters 108 (2012).","ieee":"M. Mark et al., “Preparation and spectroscopy of a metastable mott-insulator state with attractive interactions,” Physical Review Letters, vol. 108, no. 21. American Physical Society, 2012.","mla":"Mark, Manfred, et al. “Preparation and Spectroscopy of a Metastable Mott-Insulator State with Attractive Interactions.” Physical Review Letters, vol. 108, no. 21, American Physical Society, 2012, doi:10.1103/PhysRevLett.108.215302."},"extern":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"American Physical Society","main_file_link":[{"url":"https://arxiv.org/abs/1201.1008","open_access":"1"}],"oa":1,"month":"05","intvolume":" 108","abstract":[{"lang":"eng","text":"We prepare and study a metastable attractive Mott-insulator state formed with bosonic atoms in a three-dimensional optical lattice. Starting from a Mott insulator with Cs atoms at weak repulsive interactions, we use a magnetic Feshbach resonance to tune the interactions to large attractive values and produce a metastable state pinned by attractive interactions with a lifetime on the order of 10 s. We probe the (de)excitation spectrum via lattice modulation spectroscopy, measuring the interaction dependence of two- and three-body bound-state energies. As a result of increased on-site three-body loss we observe resonance broadening and suppression of tunneling processes that produce three-body occupation."}],"oa_version":"Preprint","acknowledgement":"We are indebted to R. Grimm for generous support. We thank J. von Stecher, P. Johnson, and E. Tiesinga for fruitful discussions. We gratefully acknowledge funding by the Austrian Science Fund (FWF) within Project No. I153-N16 and within the framework of the European Science Foundation (ESF) EuroQUASAR collective research project QuDeGPM, and by the European Research Council (ERC) under Project No. 278417.","volume":108,"doi":"10.1103/PhysRevLett.108.215302","date_published":"2012-05-25T00:00:00Z","issue":"21","date_created":"2018-12-11T11:49:55Z","publication_status":"published","year":"2012","day":"25","publication":"Physical Review Letters","language":[{"iso":"eng"}]},{"article_number":"X21.00008","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","citation":{"chicago":"Polshyn, Hryhoriy, and Raffi Budakian. “Cantilever Torque Magnetometry Study of Multiply Connected BSCCO Arrays near Tc.” In APS March Meeting 2012, Vol. 57. American Physical Society, 2012.","ista":"Polshyn H, Budakian R. 2012. Cantilever torque magnetometry study of multiply connected BSCCO arrays near Tc. APS March Meeting 2012. APS: American Physical Society, Bulletin of the American Physical Society, vol. 57, X21.00008.","mla":"Polshyn, Hryhoriy, and Raffi Budakian. “Cantilever Torque Magnetometry Study of Multiply Connected BSCCO Arrays near Tc.” APS March Meeting 2012, vol. 57, no. 1, X21.00008, American Physical Society, 2012.","ieee":"H. Polshyn and R. Budakian, “Cantilever torque magnetometry study of multiply connected BSCCO arrays near Tc,” in APS March Meeting 2012, Boston, MA, United States, 2012, vol. 57, no. 1.","short":"H. Polshyn, R. Budakian, in:, APS March Meeting 2012, American Physical Society, 2012.","ama":"Polshyn H, Budakian R. Cantilever torque magnetometry study of multiply connected BSCCO arrays near Tc. In: APS March Meeting 2012. Vol 57. American Physical Society; 2012.","apa":"Polshyn, H., & Budakian, R. (2012). Cantilever torque magnetometry study of multiply connected BSCCO arrays near Tc. In APS March Meeting 2012 (Vol. 57). Boston, MA, United States: American Physical Society."},"title":"Cantilever torque magnetometry study of multiply connected BSCCO arrays near Tc","author":[{"first_name":"Hryhoriy","id":"edfc7cb1-526e-11ec-b05a-e6ecc27e4e48","last_name":"Polshyn","full_name":"Polshyn, Hryhoriy","orcid":"0000-0001-8223-8896"},{"full_name":"Budakian, Raffi","last_name":"Budakian","first_name":"Raffi"}],"article_processing_charge":"No","acknowledgement":"This work was supported by the Center for Emergent Superconductivity, an Energy Frontier Research Center funded by the U.S. DOE, Office of Science, under Award No. DE-AC0298CH1088.","quality_controlled":"1","publisher":"American Physical Society","oa":1,"day":"01","publication":"APS March Meeting 2012","year":"2012","date_published":"2012-02-01T00:00:00Z","date_created":"2022-02-08T10:39:08Z","_id":"10750","status":"public","type":"conference","conference":{"name":"APS: American Physical Society","start_date":"2012-02-27","end_date":"2012-03-02","location":"Boston, MA, United States"},"extern":"1","date_updated":"2022-02-08T10:48:01Z","oa_version":"Published Version","abstract":[{"text":"The goal of this work is to study the superconducting coherence length in the fluctuation regime in cuprate superconductors. In this work we present cantilever torque magnetometry measurements of micron-size BSCCO flakes patterned with arrays of nanometer scale rings or holes. Using ultrasensitive dynamic torque magnetometry, oscillations in magnetization are observed near Tc as a function of the applied magnetic flux threading the array. Special effort was made to detect the oscillations in magnetization at temperatures above Tc, where the Nernst effect and magnetization measurements suggest the possibility of pairing. To constrain the magnitude of the coherence length in the fluctuation regime, we will present the dependence of the amplitude of the h/2e period oscillations as a function of temperature and hole size.","lang":"eng"}],"month":"02","intvolume":" 57","alternative_title":["Bulletin of the American Physical Society"],"main_file_link":[{"open_access":"1","url":"https://meetings.aps.org/Meeting/MAR12/Event/167014"}],"language":[{"iso":"eng"}],"publication_identifier":{"issn":["0003-0503"]},"publication_status":"published","volume":57,"issue":"1"},{"date_created":"2022-03-21T07:16:12Z","date_published":"2012-07-23T00:00:00Z","doi":"10.1007/978-1-4614-3903-5_6","page":"109-129","language":[{"iso":"eng"}],"publication":"Adenosine","day":"23","publication_status":"published","year":"2012","publication_identifier":{"isbn":["9781461439028"],"eisbn":["9781461439035"]},"place":"New York","month":"07","edition":"1","quality_controlled":"1","scopus_import":"1","publisher":"Springer","acknowledgement":"We are grateful to Research into Ageing/Ageing UK and The Dunhill Trust for funding SzN’s graduate studies, and to Prof Nicholas Dale for his valuable input.","oa_version":"None","abstract":[{"lang":"eng","text":"Under physiological conditions the brain, via the purine salvage pathway, reuses the preformed purine bases hypoxanthine, derived from ATP degradation, and adenine (Ade), derived from polyamine synthesis, to restore its ATP pool. However, the massive degradation of ATP during ischemia, although providing valuable neuroprotective adenosine, results in the accumulation and loss of diffusible purine metabolites and thereby leads to a protracted reduction in the post-ischemic ATP pool size. In vivo, this may both limit the ability to deploy ATP-dependent reparative mechanisms and reduce the subsequent availability of adenosine, whilst in brain slices results in tissue with substantially lower levels of ATP than in vivo. In the present review, we describe the mechanisms by which brain tissue replenishes its ATP, how this can be improved with the clinically tolerated chemicals D-ribose and adenine, and the functional, and potential therapeutic, implications of doing so."}],"title":"The double-edged sword: Gaining Adenosine at the expense of ATP. How to balance the books","department":[{"_id":"HaJa"}],"editor":[{"first_name":"Susan","last_name":"Masino","full_name":"Masino, Susan"},{"first_name":"Detlev","full_name":"Boison, Detlev","last_name":"Boison"}],"article_processing_charge":"No","author":[{"first_name":"Stephanie","id":"3C77F464-F248-11E8-B48F-1D18A9856A87","last_name":"zur Nedden","full_name":"zur Nedden, Stephanie"},{"first_name":"Alexander S.","full_name":"Doney, Alexander S.","last_name":"Doney"},{"last_name":"Frenguelli","full_name":"Frenguelli, Bruno G.","first_name":"Bruno G."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"chicago":"Nedden, Stephanie zur, Alexander S. Doney, and Bruno G. Frenguelli. “The Double-Edged Sword: Gaining Adenosine at the Expense of ATP. How to Balance the Books.” In Adenosine, edited by Susan Masino and Detlev Boison, 1st ed., 109–29. New York: Springer, 2012. https://doi.org/10.1007/978-1-4614-3903-5_6.","ista":"zur Nedden S, Doney AS, Frenguelli BG. 2012.The double-edged sword: Gaining Adenosine at the expense of ATP. How to balance the books. In: Adenosine. , 109–129.","mla":"zur Nedden, Stephanie, et al. “The Double-Edged Sword: Gaining Adenosine at the Expense of ATP. How to Balance the Books.” Adenosine, edited by Susan Masino and Detlev Boison, 1st ed., Springer, 2012, pp. 109–29, doi:10.1007/978-1-4614-3903-5_6.","apa":"zur Nedden, S., Doney, A. S., & Frenguelli, B. G. (2012). The double-edged sword: Gaining Adenosine at the expense of ATP. How to balance the books. In S. Masino & D. Boison (Eds.), Adenosine (1st ed., pp. 109–129). New York: Springer. https://doi.org/10.1007/978-1-4614-3903-5_6","ama":"zur Nedden S, Doney AS, Frenguelli BG. The double-edged sword: Gaining Adenosine at the expense of ATP. How to balance the books. In: Masino S, Boison D, eds. Adenosine. 1st ed. New York: Springer; 2012:109-129. doi:10.1007/978-1-4614-3903-5_6","short":"S. zur Nedden, A.S. Doney, B.G. Frenguelli, in:, S. Masino, D. Boison (Eds.), Adenosine, 1st ed., Springer, New York, 2012, pp. 109–129.","ieee":"S. zur Nedden, A. S. Doney, and B. G. Frenguelli, “The double-edged sword: Gaining Adenosine at the expense of ATP. How to balance the books,” in Adenosine, 1st ed., S. Masino and D. Boison, Eds. New York: Springer, 2012, pp. 109–129."},"date_updated":"2022-06-21T11:51:58Z","status":"public","type":"book_chapter","_id":"10896"},{"year":"2012","day":"01","publication":"Current Opinion in Cell Biology","page":"775-783","date_published":"2012-12-01T00:00:00Z","doi":"10.1016/j.ceb.2012.08.008","date_created":"2022-04-07T07:51:37Z","publisher":"Elsevier","quality_controlled":"1","citation":{"ama":"Gomez-Cavazos JS, Hetzer M. Outfits for different occasions: tissue-specific roles of Nuclear Envelope proteins. Current Opinion in Cell Biology. 2012;24(6):775-783. doi:10.1016/j.ceb.2012.08.008","apa":"Gomez-Cavazos, J. S., & Hetzer, M. (2012). Outfits for different occasions: tissue-specific roles of Nuclear Envelope proteins. Current Opinion in Cell Biology. Elsevier. https://doi.org/10.1016/j.ceb.2012.08.008","short":"J.S. Gomez-Cavazos, M. Hetzer, Current Opinion in Cell Biology 24 (2012) 775–783.","ieee":"J. S. Gomez-Cavazos and M. Hetzer, “Outfits for different occasions: tissue-specific roles of Nuclear Envelope proteins,” Current Opinion in Cell Biology, vol. 24, no. 6. Elsevier, pp. 775–783, 2012.","mla":"Gomez-Cavazos, J. Sebastian, and Martin Hetzer. “Outfits for Different Occasions: Tissue-Specific Roles of Nuclear Envelope Proteins.” Current Opinion in Cell Biology, vol. 24, no. 6, Elsevier, 2012, pp. 775–83, doi:10.1016/j.ceb.2012.08.008.","ista":"Gomez-Cavazos JS, Hetzer M. 2012. Outfits for different occasions: tissue-specific roles of Nuclear Envelope proteins. Current Opinion in Cell Biology. 24(6), 775–783.","chicago":"Gomez-Cavazos, J Sebastian, and Martin Hetzer. “Outfits for Different Occasions: Tissue-Specific Roles of Nuclear Envelope Proteins.” Current Opinion in Cell Biology. Elsevier, 2012. https://doi.org/10.1016/j.ceb.2012.08.008."},"user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","author":[{"last_name":"Gomez-Cavazos","full_name":"Gomez-Cavazos, J Sebastian","first_name":"J Sebastian"},{"last_name":"HETZER","full_name":"HETZER, Martin W","orcid":"0000-0002-2111-992X","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","first_name":"Martin W"}],"external_id":{"pmid":["22995343"]},"article_processing_charge":"No","title":"Outfits for different occasions: tissue-specific roles of Nuclear Envelope proteins","publication_identifier":{"issn":["0955-0674"]},"publication_status":"published","language":[{"iso":"eng"}],"issue":"6","volume":24,"abstract":[{"lang":"eng","text":"The Nuclear Envelope (NE) contains over 100 different proteins that associate with nuclear components such as chromatin, the lamina and the transcription machinery. Mutations in genes encoding NE proteins have been shown to result in tissue-specific defects and disease, suggesting cell-type specific differences in NE composition and function. Consistent with these observations, recent studies have revealed unexpected functions for numerous NE associated proteins during cell differentiation and development. Here we review the latest insights into the roles played by the NE in cell differentiation, development, disease and aging, focusing primarily on inner nuclear membrane (INM) proteins and nuclear pore components."}],"oa_version":"None","pmid":1,"scopus_import":"1","month":"12","intvolume":" 24","date_updated":"2022-07-18T08:38:47Z","extern":"1","_id":"11089","type":"journal_article","article_type":"original","status":"public","keyword":["Cell Biology"]},{"day":"01","publication":"Nucleus","year":"2012","doi":"10.4161/nucl.18954","date_published":"2012-01-01T00:00:00Z","date_created":"2022-04-07T07:51:53Z","page":"88-100","publisher":"Taylor & Francis","quality_controlled":"1","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","citation":{"mla":"Vargas, Jesse D., et al. “Transient Nuclear Envelope Rupturing during Interphase in Human Cancer Cells.” Nucleus, vol. 3, no. 1, Taylor & Francis, 2012, pp. 88–100, doi:10.4161/nucl.18954.","ieee":"J. D. Vargas, E. M. Hatch, D. J. Anderson, and M. Hetzer, “Transient nuclear envelope rupturing during interphase in human cancer cells,” Nucleus, vol. 3, no. 1. Taylor & Francis, pp. 88–100, 2012.","short":"J.D. Vargas, E.M. Hatch, D.J. Anderson, M. Hetzer, Nucleus 3 (2012) 88–100.","ama":"Vargas JD, Hatch EM, Anderson DJ, Hetzer M. Transient nuclear envelope rupturing during interphase in human cancer cells. Nucleus. 2012;3(1):88-100. doi:10.4161/nucl.18954","apa":"Vargas, J. D., Hatch, E. M., Anderson, D. J., & Hetzer, M. (2012). Transient nuclear envelope rupturing during interphase in human cancer cells. Nucleus. Taylor & Francis. https://doi.org/10.4161/nucl.18954","chicago":"Vargas, Jesse D., Emily M. Hatch, Daniel J. Anderson, and Martin Hetzer. “Transient Nuclear Envelope Rupturing during Interphase in Human Cancer Cells.” Nucleus. Taylor & Francis, 2012. https://doi.org/10.4161/nucl.18954.","ista":"Vargas JD, Hatch EM, Anderson DJ, Hetzer M. 2012. Transient nuclear envelope rupturing during interphase in human cancer cells. Nucleus. 3(1), 88–100."},"title":"Transient nuclear envelope rupturing during interphase in human cancer cells","author":[{"first_name":"Jesse D.","last_name":"Vargas","full_name":"Vargas, Jesse D."},{"first_name":"Emily M.","last_name":"Hatch","full_name":"Hatch, Emily M."},{"full_name":"Anderson, Daniel J.","last_name":"Anderson","first_name":"Daniel J."},{"id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","first_name":"Martin W","orcid":"0000-0002-2111-992X","full_name":"HETZER, Martin W","last_name":"HETZER"}],"external_id":{"pmid":["22567193"]},"article_processing_charge":"No","language":[{"iso":"eng"}],"publication_identifier":{"eissn":["1949-1042"],"issn":["1949-1034"]},"publication_status":"published","volume":3,"issue":"1","pmid":1,"oa_version":"None","abstract":[{"lang":"eng","text":"Neoplastic cells are often characterized by specific morphological abnormalities of the nuclear envelope (NE), which have been used for cancer diagnosis for more than a century. The NE is a double phospholipid bilayer that encapsulates the nuclear genome, regulates all nuclear trafficking of RNAs and proteins and prevents the passive diffusion of macromolecules between the nucleoplasm and the cytoplasm. Whether there is a consequence to the proper functioning of the cell and loss of structural integrity of the nucleus remains unclear. Using live cell imaging, we characterize a phenomenon wherein nuclei of several proliferating human cancer cell lines become temporarily ruptured during interphase. Strikingly, NE rupturing was associated with the mislocalization of nucleoplasmic and cytoplasmic proteins and, in the most extreme cases, the entrapment of cytoplasmic organelles in the nuclear interior. In addition, we observed the formation of micronuclei-like structures during interphase and the movement of chromatin out of the nuclear space. The frequency of these NE rupturing events was higher in cells in which the nuclear lamina, a network of intermediate filaments providing mechanical support to the NE, was not properly formed. Our data uncover the existence of a NE instability that has the potential to change the genomic landscape of cancer cells."}],"month":"01","intvolume":" 3","scopus_import":"1","extern":"1","date_updated":"2022-07-18T08:52:53Z","_id":"11091","status":"public","keyword":["Cell Biology"],"type":"journal_article","article_type":"original"},{"language":[{"iso":"eng"}],"publication_status":"published","publication_identifier":{"issn":["1534-5807"]},"volume":22,"issue":"2","oa_version":"Published Version","pmid":1,"abstract":[{"lang":"eng","text":"Nuclear pore complexes (NPCs) are built from ∼30 different proteins called nucleoporins or Nups. Previous studies have shown that several Nups exhibit cell-type-specific expression and that mutations in NPC components result in tissue-specific diseases. Here we show that a specific change in NPC composition is required for both myogenic and neuronal differentiation. The transmembrane nucleoporin Nup210 is absent in proliferating myoblasts and embryonic stem cells (ESCs) but becomes expressed and incorporated into NPCs during cell differentiation. Preventing Nup210 production by RNAi blocks myogenesis and the differentiation of ESCs into neuroprogenitors. We found that the addition of Nup210 to NPCs does not affect nuclear transport but is required for the induction of genes that are essential for cell differentiation. Our results identify a single change in NPC composition as an essential step in cell differentiation and establish a role for Nup210 in gene expression regulation and cell fate determination."}],"intvolume":" 22","month":"01","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1016/j.devcel.2011.11.021"}],"scopus_import":"1","extern":"1","date_updated":"2022-07-18T08:53:16Z","_id":"11093","keyword":["Developmental Biology","Cell Biology","General Biochemistry","Genetics and Molecular Biology","Molecular Biology"],"status":"public","type":"journal_article","article_type":"original","publication":"Developmental Cell","day":"19","year":"2012","date_created":"2022-04-07T07:52:10Z","doi":"10.1016/j.devcel.2011.11.021","date_published":"2012-01-19T00:00:00Z","page":"446-458","oa":1,"publisher":"Elsevier","quality_controlled":"1","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","citation":{"ista":"D’Angelo MA, Gomez-Cavazos JS, Mei A, Lackner DH, Hetzer M. 2012. A change in nuclear pore complex composition regulates cell differentiation. Developmental Cell. 22(2), 446–458.","chicago":"D’Angelo, Maximiliano A., J. Sebastian Gomez-Cavazos, Arianna Mei, Daniel H. Lackner, and Martin Hetzer. “A Change in Nuclear Pore Complex Composition Regulates Cell Differentiation.” Developmental Cell. Elsevier, 2012. https://doi.org/10.1016/j.devcel.2011.11.021.","apa":"D’Angelo, M. A., Gomez-Cavazos, J. S., Mei, A., Lackner, D. H., & Hetzer, M. (2012). A change in nuclear pore complex composition regulates cell differentiation. Developmental Cell. Elsevier. https://doi.org/10.1016/j.devcel.2011.11.021","ama":"D’Angelo MA, Gomez-Cavazos JS, Mei A, Lackner DH, Hetzer M. A change in nuclear pore complex composition regulates cell differentiation. Developmental Cell. 2012;22(2):446-458. doi:10.1016/j.devcel.2011.11.021","short":"M.A. D’Angelo, J.S. Gomez-Cavazos, A. Mei, D.H. Lackner, M. Hetzer, Developmental Cell 22 (2012) 446–458.","ieee":"M. A. D’Angelo, J. S. Gomez-Cavazos, A. Mei, D. H. Lackner, and M. Hetzer, “A change in nuclear pore complex composition regulates cell differentiation,” Developmental Cell, vol. 22, no. 2. Elsevier, pp. 446–458, 2012.","mla":"D’Angelo, Maximiliano A., et al. “A Change in Nuclear Pore Complex Composition Regulates Cell Differentiation.” Developmental Cell, vol. 22, no. 2, Elsevier, 2012, pp. 446–58, doi:10.1016/j.devcel.2011.11.021."},"title":"A change in nuclear pore complex composition regulates cell differentiation","article_processing_charge":"No","external_id":{"pmid":["22264802"]},"author":[{"full_name":"D'Angelo, Maximiliano A.","last_name":"D'Angelo","first_name":"Maximiliano A."},{"last_name":"Gomez-Cavazos","full_name":"Gomez-Cavazos, J. Sebastian","first_name":"J. Sebastian"},{"last_name":"Mei","full_name":"Mei, Arianna","first_name":"Arianna"},{"first_name":"Daniel H.","last_name":"Lackner","full_name":"Lackner, Daniel H."},{"first_name":"Martin W","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","last_name":"HETZER","full_name":"HETZER, Martin W","orcid":"0000-0002-2111-992X"}]},{"language":[{"iso":"eng"}],"publication_status":"published","publication_identifier":{"issn":["0036-8075"],"eissn":["1095-9203"]},"volume":335,"issue":"6071","pmid":1,"oa_version":"None","abstract":[{"lang":"eng","text":"To combat the functional decline of the proteome, cells use the process of protein turnover to replace potentially impaired polypeptides with new functional copies. We found that extremely long-lived proteins (ELLPs) did not turn over in postmitotic cells of the rat central nervous system. These ELLPs were associated with chromatin and the nuclear pore complex, the central transport channels that mediate all molecular trafficking in and out of the nucleus. The longevity of these proteins would be expected to expose them to potentially harmful metabolites, putting them at risk of accumulating damage over extended periods of time. Thus, it is possible that failure to maintain proper levels and functional integrity of ELLPs in nonproliferative cells might contribute to age-related deterioration in cell and tissue function."}],"intvolume":" 335","month":"02","scopus_import":"1","extern":"1","date_updated":"2022-07-18T08:53:06Z","_id":"11092","keyword":["Multidisciplinary"],"status":"public","type":"journal_article","article_type":"letter_note","publication":"Science","day":"02","year":"2012","date_created":"2022-04-07T07:52:01Z","date_published":"2012-02-02T00:00:00Z","doi":"10.1126/science.1217421","page":"942-942","publisher":"American Association for the Advancement of Science","quality_controlled":"1","user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","citation":{"chicago":"Savas, Jeffrey N., Brandon H. Toyama, Tao Xu, John R. Yates, and Martin Hetzer. “Extremely Long-Lived Nuclear Pore Proteins in the Rat Brain.” Science. American Association for the Advancement of Science, 2012. https://doi.org/10.1126/science.1217421.","ista":"Savas JN, Toyama BH, Xu T, Yates JR, Hetzer M. 2012. Extremely long-lived nuclear pore proteins in the rat brain. Science. 335(6071), 942–942.","mla":"Savas, Jeffrey N., et al. “Extremely Long-Lived Nuclear Pore Proteins in the Rat Brain.” Science, vol. 335, no. 6071, American Association for the Advancement of Science, 2012, pp. 942–942, doi:10.1126/science.1217421.","ama":"Savas JN, Toyama BH, Xu T, Yates JR, Hetzer M. Extremely long-lived nuclear pore proteins in the rat brain. Science. 2012;335(6071):942-942. doi:10.1126/science.1217421","apa":"Savas, J. N., Toyama, B. H., Xu, T., Yates, J. R., & Hetzer, M. (2012). Extremely long-lived nuclear pore proteins in the rat brain. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1217421","short":"J.N. Savas, B.H. Toyama, T. Xu, J.R. Yates, M. Hetzer, Science 335 (2012) 942–942.","ieee":"J. N. Savas, B. H. Toyama, T. Xu, J. R. Yates, and M. Hetzer, “Extremely long-lived nuclear pore proteins in the rat brain,” Science, vol. 335, no. 6071. American Association for the Advancement of Science, pp. 942–942, 2012."},"title":"Extremely long-lived nuclear pore proteins in the rat brain","external_id":{"pmid":["22300851"]},"article_processing_charge":"No","author":[{"first_name":"Jeffrey N.","last_name":"Savas","full_name":"Savas, Jeffrey N."},{"first_name":"Brandon H.","full_name":"Toyama, Brandon H.","last_name":"Toyama"},{"first_name":"Tao","last_name":"Xu","full_name":"Xu, Tao"},{"last_name":"Yates","full_name":"Yates, John R.","first_name":"John R."},{"last_name":"HETZER","full_name":"HETZER, Martin W","orcid":"0000-0002-2111-992X","id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","first_name":"Martin W"}]},{"oa":1,"quality_controlled":"1","publisher":"Elsevier","year":"2012","publication":"Cell","day":"11","page":"733-735","date_created":"2022-04-07T07:51:45Z","doi":"10.1016/j.cell.2012.04.018","date_published":"2012-05-11T00:00:00Z","citation":{"apa":"Hatch, E. M., & Hetzer, M. (2012). RNP export by nuclear envelope budding. Cell. Elsevier. https://doi.org/10.1016/j.cell.2012.04.018","ama":"Hatch EM, Hetzer M. RNP export by nuclear envelope budding. Cell. 2012;149(4):733-735. doi:10.1016/j.cell.2012.04.018","short":"E.M. Hatch, M. Hetzer, Cell 149 (2012) 733–735.","ieee":"E. M. Hatch and M. Hetzer, “RNP export by nuclear envelope budding,” Cell, vol. 149, no. 4. Elsevier, pp. 733–735, 2012.","mla":"Hatch, Emily M., and Martin Hetzer. “RNP Export by Nuclear Envelope Budding.” Cell, vol. 149, no. 4, Elsevier, 2012, pp. 733–35, doi:10.1016/j.cell.2012.04.018.","ista":"Hatch EM, Hetzer M. 2012. RNP export by nuclear envelope budding. Cell. 149(4), 733–735.","chicago":"Hatch, Emily M., and Martin Hetzer. “RNP Export by Nuclear Envelope Budding.” Cell. Elsevier, 2012. https://doi.org/10.1016/j.cell.2012.04.018."},"user_id":"72615eeb-f1f3-11ec-aa25-d4573ddc34fd","external_id":{"pmid":["22579277"]},"article_processing_charge":"No","author":[{"full_name":"Hatch, Emily M.","last_name":"Hatch","first_name":"Emily M."},{"id":"86c0d31b-b4eb-11ec-ac5a-eae7b2e135ed","first_name":"Martin W","last_name":"HETZER","full_name":"HETZER, Martin W","orcid":"0000-0002-2111-992X"}],"title":"RNP export by nuclear envelope budding","abstract":[{"lang":"eng","text":"Nuclear export of mRNAs is thought to occur exclusively through nuclear pore complexes. In this issue of Cell, Speese et al. identify an alternate pathway for mRNA export in muscle cells where ribonucleoprotein complexes involved in forming neuromuscular junctions transit the nuclear envelope by fusing with and budding through the nuclear membrane."}],"oa_version":"Published Version","pmid":1,"main_file_link":[{"url":"https://doi.org/10.1016/j.cell.2012.04.018","open_access":"1"}],"scopus_import":"1","intvolume":" 149","month":"05","publication_status":"published","publication_identifier":{"issn":["0092-8674"]},"language":[{"iso":"eng"}],"issue":"4","volume":149,"_id":"11090","article_type":"letter_note","type":"journal_article","keyword":["General Biochemistry","Genetics and Molecular Biology"],"status":"public","date_updated":"2022-07-18T08:58:48Z","extern":"1"},{"date_updated":"2021-01-12T06:48:30Z","citation":{"ieee":"S. R. Waitukaitis and H. Jaeger, “Impact-activated solidification of dense suspensions via dynamic jamming fronts,” Nature, vol. 487, no. 7406. Nature Publishing Group, pp. 205–209, 2012.","short":"S.R. Waitukaitis, H. Jaeger, Nature 487 (2012) 205–209.","ama":"Waitukaitis SR, Jaeger H. Impact-activated solidification of dense suspensions via dynamic jamming fronts. Nature. 2012;487(7406):205-209. doi:10.1038/nature11187","apa":"Waitukaitis, S. R., & Jaeger, H. (2012). Impact-activated solidification of dense suspensions via dynamic jamming fronts. Nature. Nature Publishing Group. https://doi.org/10.1038/nature11187","mla":"Waitukaitis, Scott R., and Heinrich Jaeger. “Impact-Activated Solidification of Dense Suspensions via Dynamic Jamming Fronts.” Nature, vol. 487, no. 7406, Nature Publishing Group, 2012, pp. 205–09, doi:10.1038/nature11187.","ista":"Waitukaitis SR, Jaeger H. 2012. Impact-activated solidification of dense suspensions via dynamic jamming fronts. Nature. 487(7406), 205–209.","chicago":"Waitukaitis, Scott R, and Heinrich Jaeger. “Impact-Activated Solidification of Dense Suspensions via Dynamic Jamming Fronts.” Nature. Nature Publishing Group, 2012. https://doi.org/10.1038/nature11187."},"extern":"1","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","publist_id":"7941","author":[{"last_name":"Waitukaitis","orcid":"0000-0002-2299-3176","full_name":"Waitukaitis, Scott R","first_name":"Scott R","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Jaeger, Heinrich","last_name":"Jaeger","first_name":"Heinrich"}],"title":"Impact-activated solidification of dense suspensions via dynamic jamming fronts","_id":"113","type":"journal_article","status":"public","publication_status":"published","year":"2012","day":"12","publication":"Nature","language":[{"iso":"eng"}],"page":"205 - 209","volume":487,"date_published":"2012-07-12T00:00:00Z","issue":"7406","doi":"10.1038/nature11187","date_created":"2018-12-11T11:44:42Z","abstract":[{"text":"Although liquids typically flow around intruding objects, a counterintuitive phenomenon occurs in dense suspensions of micrometre-sized particles: they become liquid-like when perturbed lightly, but harden when driven strongly. Rheological experiments have investigated how such thickening arises under shear, and linked it to hydrodynamic interactions or granular dilation. However, neither of these mechanisms alone can explain the ability of suspensions to generate very large, positive normal stresses under impact. To illustrate the phenomenon, such stresses can be large enough to allow a person to run across a suspension without sinking, and far exceed the upper limit observed under shear or extension. Here we show that these stresses originate from an impact-generated solidification front that transforms an initially compressible particle matrix into a rapidly growing jammed region, ultimately leading to extraordinary amounts of momentum absorption. Using high-speed videography, embedded force sensing and X-ray imaging, we capture the detailed dynamics of this process as it decelerates a metal rod hitting a suspension of cornflour (cornstarch) in water. We develop a model for the dynamic solidification and its effect on the surrounding suspension that reproduces the observed behaviour quantitatively. Our findings suggest that prior interpretations of the impact resistance as dominated by shear thickening need to be revisited.","lang":"eng"}],"oa_version":"None","acknowledgement":"This work was supported by NSF through its MRSEC programme (DMR-0820054) and by the US Army Research Office through grant number W911NF-12-1-0182. S.R.W. acknowledges support from a Millikan fellowship.","publisher":"Nature Publishing Group","month":"07","intvolume":" 487"},{"type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","short":"CC BY-NC (4.0)"},"status":"public","_id":"114","file_date_updated":"2019-05-16T11:08:52Z","date_updated":"2021-01-12T06:48:34Z","extern":"1","ddc":["530"],"month":"08","intvolume":" 29","abstract":[{"text":"We report on an investigation of the solidification of a cornstarch and water suspension during normal impact on its surface. We find that a finite time after impact, the suspension displays characteristics reminiscent of a solid, including localized stress transmission, the development of a yield stress, and some elastic energy storage. The time dependence of these characteristics depends on the thickness of the cornstarch layer, showing that the solidification is a dynamic process driven by the impacting object. These findings confirm previous speculations that rapidly applied normal stress transforms the normally fluid-like suspension into a temporarily jammed solid and draw a clear distinction between the effects of normal stress and shear stress in dense suspensions.","lang":"eng"}],"oa_version":"Published Version","volume":29,"issue":"1E","license":"https://creativecommons.org/licenses/by-nc/4.0/","publication_status":"published","file":[{"creator":"kschuh","file_size":589776,"date_updated":"2019-05-16T11:08:52Z","file_name":"2012_RCF_Waitukaitis.pdf","date_created":"2019-05-16T11:08:52Z","relation":"main_file","access_level":"open_access","content_type":"application/pdf","success":1,"file_id":"6461"}],"language":[{"iso":"eng"}],"publist_id":"7940","author":[{"first_name":"Scott R","id":"3A1FFC16-F248-11E8-B48F-1D18A9856A87","last_name":"Waitukaitis","full_name":"Waitukaitis, Scott R","orcid":"0000-0002-2299-3176"},{"first_name":"Heinrich","last_name":"Jaeger","full_name":"Jaeger, Heinrich"}],"title":"Solidification of a cornstarch and water suspension","citation":{"ista":"Waitukaitis SR, Jaeger H. 2012. Solidification of a cornstarch and water suspension. Revista Cubana de Fisica. 29(1E), 1E31-1E33.","chicago":"Waitukaitis, Scott R, and Heinrich Jaeger. “Solidification of a Cornstarch and Water Suspension.” Revista Cubana de Fisica. Universidad de La Habana, 2012.","ama":"Waitukaitis SR, Jaeger H. Solidification of a cornstarch and water suspension. Revista Cubana de Fisica. 2012;29(1E):1E31-1E33.","apa":"Waitukaitis, S. R., & Jaeger, H. (2012). Solidification of a cornstarch and water suspension. Revista Cubana de Fisica. Universidad de La Habana.","short":"S.R. Waitukaitis, H. Jaeger, Revista Cubana de Fisica 29 (2012) 1E31-1E33.","ieee":"S. R. Waitukaitis and H. Jaeger, “Solidification of a cornstarch and water suspension,” Revista Cubana de Fisica, vol. 29, no. 1E. Universidad de La Habana, p. 1E31-1E33, 2012.","mla":"Waitukaitis, Scott R., and Heinrich Jaeger. “Solidification of a Cornstarch and Water Suspension.” Revista Cubana de Fisica, vol. 29, no. 1E, Universidad de La Habana, 2012, p. 1E31-1E33."},"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","quality_controlled":"1","publisher":"Universidad de La Habana","oa":1,"acknowledgement":"This work was supported by the NSF through its MRSEC program (DMR-0820054). S. R. W. acknowledges support from a Millikan fellowship.","page":"1E31 - 1E33","date_published":"2012-08-14T00:00:00Z","date_created":"2018-12-11T11:44:42Z","has_accepted_license":"1","year":"2012","day":"14","publication":"Revista Cubana de Fisica"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","extern":"1","date_updated":"2023-02-09T09:19:49Z","citation":{"chicago":"Dütting, Paul, Monika H Henzinger, and Ingmar Weber. “Maximizing Revenue from Strategic Recommendations under Decaying Trust.” In Proceedings of the 21st ACM International Conference on Information and Knowledge Management, 2268–86. Association for Computing Machinery, 2012. https://doi.org/10.1145/2396761.2398621.","ista":"Dütting P, Henzinger MH, Weber I. 2012. Maximizing revenue from strategic recommendations under decaying trust. Proceedings of the 21st ACM international conference on Information and knowledge management. CIKM: Conference on Information and Knowledge Management, 2268–2286.","mla":"Dütting, Paul, et al. “Maximizing Revenue from Strategic Recommendations under Decaying Trust.” Proceedings of the 21st ACM International Conference on Information and Knowledge Management, Association for Computing Machinery, 2012, pp. 2268–86, doi:10.1145/2396761.2398621.","short":"P. Dütting, M.H. Henzinger, I. Weber, in:, Proceedings of the 21st ACM International Conference on Information and Knowledge Management, Association for Computing Machinery, 2012, pp. 2268–2286.","ieee":"P. Dütting, M. H. Henzinger, and I. Weber, “Maximizing revenue from strategic recommendations under decaying trust,” in Proceedings of the 21st ACM international conference on Information and knowledge management, Maui, HI, United States, 2012, pp. 2268–2286.","apa":"Dütting, P., Henzinger, M. H., & Weber, I. (2012). Maximizing revenue from strategic recommendations under decaying trust. In Proceedings of the 21st ACM international conference on Information and knowledge management (pp. 2268–2286). Maui, HI, United States: Association for Computing Machinery. https://doi.org/10.1145/2396761.2398621","ama":"Dütting P, Henzinger MH, Weber I. Maximizing revenue from strategic recommendations under decaying trust. In: Proceedings of the 21st ACM International Conference on Information and Knowledge Management. Association for Computing Machinery; 2012:2268-2286. doi:10.1145/2396761.2398621"},"title":"Maximizing revenue from strategic recommendations under decaying trust","article_processing_charge":"No","author":[{"full_name":"Dütting, Paul","last_name":"Dütting","first_name":"Paul"},{"first_name":"Monika H","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","full_name":"Henzinger, Monika H","orcid":"0000-0002-5008-6530","last_name":"Henzinger"},{"last_name":"Weber","full_name":"Weber, Ingmar","first_name":"Ingmar"}],"_id":"11656","status":"public","conference":{"name":"CIKM: Conference on Information and Knowledge Management","start_date":"2012-10-29","end_date":"2012-11-02","location":"Maui, HI, United States"},"type":"conference","publication":"Proceedings of the 21st ACM international conference on Information and knowledge management","language":[{"iso":"eng"}],"day":"29","publication_status":"published","year":"2012","publication_identifier":{"isbn":["9781450311564"]},"date_created":"2022-07-27T06:47:53Z","doi":"10.1145/2396761.2398621","date_published":"2012-10-29T00:00:00Z","page":"2268-2286","oa_version":"None","abstract":[{"lang":"eng","text":"Suppose your sole interest in recommending a product to me is to maximize the amount paid to you by the seller for a sequence of recommendations. How should you recommend optimally if I become more inclined to ignore you with each irrelevant recommendation you make? Finding an answer to this question is a key challenge in all forms of marketing that rely on and explore social ties; ranging from personal recommendations to viral marketing.\r\n\r\nWe prove that even if the recommendee regains her initial trust on each successful recommendation, the expected revenue the recommender can make over an infinite period due to payments by the seller is bounded. This can only be overcome when the recommendee also incrementally regains trust during periods without any recommendation. Here, we see a connection to \"banner blindness,\" suggesting that showing fewer ads can lead to a higher long-term revenue."}],"month":"10","scopus_import":"1","quality_controlled":"1","publisher":"Association for Computing Machinery"},{"year":"2012","day":"01","publication":"Journal of Materials Science","page":"5729-5734","date_published":"2012-08-01T00:00:00Z","doi":"10.1007/s10853-012-6463-6","date_created":"2022-08-08T08:28:20Z","publisher":"Springer Nature","quality_controlled":"1","citation":{"chicago":"Lukas, K. C., G. Joshi, Kimberly A Modic, Z. F. Ren, and C. P. Opeil. “Thermoelectric Properties of Ho-Doped Bi0.88Sb0.12.” Journal of Materials Science. Springer Nature, 2012. https://doi.org/10.1007/s10853-012-6463-6.","ista":"Lukas KC, Joshi G, Modic KA, Ren ZF, Opeil CP. 2012. Thermoelectric properties of Ho-doped Bi0.88Sb0.12. Journal of Materials Science. 47(15), 5729–5734.","mla":"Lukas, K. C., et al. “Thermoelectric Properties of Ho-Doped Bi0.88Sb0.12.” Journal of Materials Science, vol. 47, no. 15, Springer Nature, 2012, pp. 5729–34, doi:10.1007/s10853-012-6463-6.","ama":"Lukas KC, Joshi G, Modic KA, Ren ZF, Opeil CP. Thermoelectric properties of Ho-doped Bi0.88Sb0.12. Journal of Materials Science. 2012;47(15):5729-5734. doi:10.1007/s10853-012-6463-6","apa":"Lukas, K. C., Joshi, G., Modic, K. A., Ren, Z. F., & Opeil, C. P. (2012). Thermoelectric properties of Ho-doped Bi0.88Sb0.12. Journal of Materials Science. Springer Nature. https://doi.org/10.1007/s10853-012-6463-6","ieee":"K. C. Lukas, G. Joshi, K. A. Modic, Z. F. Ren, and C. P. Opeil, “Thermoelectric properties of Ho-doped Bi0.88Sb0.12,” Journal of Materials Science, vol. 47, no. 15. Springer Nature, pp. 5729–5734, 2012.","short":"K.C. Lukas, G. Joshi, K.A. Modic, Z.F. Ren, C.P. Opeil, Journal of Materials Science 47 (2012) 5729–5734."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"first_name":"K. C.","full_name":"Lukas, K. C.","last_name":"Lukas"},{"first_name":"G.","last_name":"Joshi","full_name":"Joshi, G."},{"orcid":"0000-0001-9760-3147","full_name":"Modic, Kimberly A","last_name":"Modic","id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425","first_name":"Kimberly A"},{"first_name":"Z. F.","last_name":"Ren","full_name":"Ren, Z. F."},{"first_name":"C. P.","full_name":"Opeil, C. P.","last_name":"Opeil"}],"external_id":{"arxiv":["1201.6304"]},"article_processing_charge":"No","title":"Thermoelectric properties of Ho-doped Bi0.88Sb0.12","publication_identifier":{"eissn":["1573-4803"],"issn":["0022-2461"]},"publication_status":"published","language":[{"iso":"eng"}],"volume":47,"issue":"15","abstract":[{"text":"The Seebeck coefficients, electrical resistivities, total thermal conductivities, and magnetization are reported for temperatures between 5 and 350 K for n-type Bi0.88Sb0.12 nano-composite alloys made by Ho-doping at the 0, 1, and 3 % atomic levels. The alloys were prepared using a dc hot-pressing method, and are shown to be single phase for both Ho contents with grain sizes on the average of 900 nm. We find the parent compound has a maximum of ZT = 0.28 at 231 K, while doping 1 % Ho increases the maximum ZT to 0.31 at 221 K and the 3 % doped sample suppresses the maximum ZT = 0.24 at a temperature of 260 K.","lang":"eng"}],"oa_version":"Preprint","scopus_import":"1","month":"08","intvolume":" 47","date_updated":"2022-08-11T09:34:39Z","extern":"1","_id":"11751","type":"journal_article","article_type":"original","status":"public"},{"date_created":"2022-08-11T11:32:25Z","date_published":"2012-12-01T00:00:00Z","doi":"10.1007/978-3-642-35311-6_4","page":"44–57","publication":"8th International Workshop on Internet and Network Economics","day":"01","year":"2012","oa":1,"publisher":"Springer Nature","quality_controlled":"1","title":"Auctions with heterogeneous items and budget limits","external_id":{"arxiv":["1209.6448"]},"article_processing_charge":"No","author":[{"first_name":"Paul","full_name":"Dütting, Paul","last_name":"Dütting"},{"full_name":"Henzinger, Monika H","orcid":"0000-0002-5008-6530","last_name":"Henzinger","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","first_name":"Monika H"},{"last_name":"Starnberger","full_name":"Starnberger, Martin","first_name":"Martin"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ista":"Dütting P, Henzinger MH, Starnberger M. 2012. Auctions with heterogeneous items and budget limits. 8th International Workshop on Internet and Network Economics. WINE: International Conference on Web and Internet Economics, LNCS, vol. 7695, 44–57.","chicago":"Dütting, Paul, Monika H Henzinger, and Martin Starnberger. “Auctions with Heterogeneous Items and Budget Limits.” In 8th International Workshop on Internet and Network Economics, 7695:44–57. Springer Nature, 2012. https://doi.org/10.1007/978-3-642-35311-6_4.","ieee":"P. Dütting, M. H. Henzinger, and M. Starnberger, “Auctions with heterogeneous items and budget limits,” in 8th International Workshop on Internet and Network Economics, Liverpool, United Kingdom, 2012, vol. 7695, pp. 44–57.","short":"P. Dütting, M.H. Henzinger, M. Starnberger, in:, 8th International Workshop on Internet and Network Economics, Springer Nature, 2012, pp. 44–57.","ama":"Dütting P, Henzinger MH, Starnberger M. Auctions with heterogeneous items and budget limits. In: 8th International Workshop on Internet and Network Economics. Vol 7695. Springer Nature; 2012:44–57. doi:10.1007/978-3-642-35311-6_4","apa":"Dütting, P., Henzinger, M. H., & Starnberger, M. (2012). Auctions with heterogeneous items and budget limits. In 8th International Workshop on Internet and Network Economics (Vol. 7695, pp. 44–57). Liverpool, United Kingdom: Springer Nature. https://doi.org/10.1007/978-3-642-35311-6_4","mla":"Dütting, Paul, et al. “Auctions with Heterogeneous Items and Budget Limits.” 8th International Workshop on Internet and Network Economics, vol. 7695, Springer Nature, 2012, pp. 44–57, doi:10.1007/978-3-642-35311-6_4."},"volume":7695,"related_material":{"record":[{"relation":"later_version","id":"11794","status":"public"}]},"language":[{"iso":"eng"}],"publication_status":"published","publication_identifier":{"issn":["1611-3349"],"isbn":["9783642353109"]},"intvolume":" 7695","month":"12","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1209.6448"}],"scopus_import":"1","alternative_title":["LNCS"],"oa_version":"Preprint","abstract":[{"lang":"eng","text":"We study individual rational, Pareto optimal, and incentive compatible mechanisms for auctions with heterogeneous items and budget limits. For multi-dimensional valuations we show that there can be no deterministic mechanism with these properties for divisible items. We use this to show that there can also be no randomized mechanism that achieves this for either divisible or indivisible items. For single-dimensional valuations we show that there can be no deterministic mechanism with these properties for indivisible items, but that there is a randomized mechanism that achieves this for either divisible or indivisible items. The impossibility results hold for public budgets, while the mechanism allows private budgets, which is in both cases the harder variant to show. While all positive results are polynomial-time algorithms, all negative results hold independent of complexity considerations."}],"extern":"1","date_updated":"2023-02-21T16:28:29Z","status":"public","conference":{"end_date":"2012-12-14","location":"Liverpool, United Kingdom","start_date":"2012-12-11","name":"WINE: International Conference on Web and Internet Economics"},"type":"conference","_id":"11794"},{"title":"On multiple keyword sponsored search auctions with budgets","article_processing_charge":"No","author":[{"last_name":"Colini-Baldeschi","full_name":"Colini-Baldeschi, Riccardo","first_name":"Riccardo"},{"last_name":"Henzinger","orcid":"0000-0002-5008-6530","full_name":"Henzinger, Monika H","id":"540c9bbd-f2de-11ec-812d-d04a5be85630","first_name":"Monika H"},{"first_name":"Stefano","full_name":"Leonardi, Stefano","last_name":"Leonardi"},{"full_name":"Starnberger, Martin","last_name":"Starnberger","first_name":"Martin"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ista":"Colini-Baldeschi R, Henzinger MH, Leonardi S, Starnberger M. 2012. On multiple keyword sponsored search auctions with budgets. 39th International Colloquium on Automata, Languages, and Programming. ICALP: International Colloquium on Automata, Languages, and Programming, LNCS, vol. 7392, 1–12.","chicago":"Colini-Baldeschi, Riccardo, Monika H Henzinger, Stefano Leonardi, and Martin Starnberger. “On Multiple Keyword Sponsored Search Auctions with Budgets.” In 39th International Colloquium on Automata, Languages, and Programming, 7392:1–12. Springer Nature, 2012. https://doi.org/10.1007/978-3-642-31585-5_1.","apa":"Colini-Baldeschi, R., Henzinger, M. H., Leonardi, S., & Starnberger, M. (2012). On multiple keyword sponsored search auctions with budgets. In 39th International Colloquium on Automata, Languages, and Programming (Vol. 7392, pp. 1–12). Warwick, United Kingdom: Springer Nature. https://doi.org/10.1007/978-3-642-31585-5_1","ama":"Colini-Baldeschi R, Henzinger MH, Leonardi S, Starnberger M. On multiple keyword sponsored search auctions with budgets. In: 39th International Colloquium on Automata, Languages, and Programming. Vol 7392. Springer Nature; 2012:1–12. doi:10.1007/978-3-642-31585-5_1","short":"R. Colini-Baldeschi, M.H. Henzinger, S. Leonardi, M. Starnberger, in:, 39th International Colloquium on Automata, Languages, and Programming, Springer Nature, 2012, pp. 1–12.","ieee":"R. Colini-Baldeschi, M. H. Henzinger, S. Leonardi, and M. Starnberger, “On multiple keyword sponsored search auctions with budgets,” in 39th International Colloquium on Automata, Languages, and Programming, Warwick, United Kingdom, 2012, vol. 7392, pp. 1–12.","mla":"Colini-Baldeschi, Riccardo, et al. “On Multiple Keyword Sponsored Search Auctions with Budgets.” 39th International Colloquium on Automata, Languages, and Programming, vol. 7392, Springer Nature, 2012, pp. 1–12, doi:10.1007/978-3-642-31585-5_1."},"date_created":"2022-08-11T11:46:51Z","date_published":"2012-07-01T00:00:00Z","doi":"10.1007/978-3-642-31585-5_1","page":"1–12","publication":"39th International Colloquium on Automata, Languages, and Programming","day":"01","year":"2012","publisher":"Springer Nature","quality_controlled":"1","extern":"1","date_updated":"2023-02-21T16:28:31Z","status":"public","conference":{"name":"ICALP: International Colloquium on Automata, Languages, and Programming","start_date":"2012-07-09","end_date":"2012-07-13","location":"Warwick, United Kingdom"},"type":"conference","_id":"11795","volume":7392,"related_material":{"record":[{"id":"11795","status":"public","relation":"later_version"}]},"language":[{"iso":"eng"}],"publication_status":"published","publication_identifier":{"issn":["0302-9743"],"isbn":["9783642315848"]},"intvolume":" 7392","month":"07","alternative_title":["LNCS"],"scopus_import":"1","oa_version":"None","abstract":[{"text":"We study multiple keyword sponsored search auctions with budgets. Each keyword has multiple ad slots with a click-through rate. The bidders have additive valuations, which are linear in the click-through rates, and budgets, which are restricting their overall payments. Additionally, the number of slots per keyword assigned to a bidder is bounded.\r\n\r\nWe show the following results: (1) We give the first mechanism for multiple keywords, where click-through rates differ among slots. Our mechanism is incentive compatible in expectation, individually rational in expectation, and Pareto optimal. (2) We study the combinatorial setting, where each bidder is only interested in a subset of the keywords. We give an incentive compatible, individually rational, Pareto optimal, and deterministic mechanism for identical click-through rates. (3) We give an impossibility result for incentive compatible, individually rational, Pareto optimal, and deterministic mechanisms for bidders with diminishing marginal valuations.","lang":"eng"}]},{"quality_controlled":"1","publisher":"Wiley","year":"2012","day":"16","publication":"Chemistry – A European Journal","page":"5047-5055","date_published":"2012-04-16T00:00:00Z","doi":"10.1002/chem.201103748","date_created":"2022-08-24T12:48:28Z","citation":{"chicago":"Pieber, Bartholomäus, David Cantillo, and C. Oliver Kappe. “Direct Arylation of Benzene with Aryl Bromides Using High‐temperature/High‐pressure Process Windows: Expanding the Scope of C-H Activation Chemistry.” Chemistry – A European Journal. Wiley, 2012. https://doi.org/10.1002/chem.201103748.","ista":"Pieber B, Cantillo D, Kappe CO. 2012. Direct arylation of benzene with aryl bromides using high‐temperature/high‐pressure process windows: Expanding the scope of C-H activation chemistry. Chemistry – A European Journal. 18(16), 5047–5055.","mla":"Pieber, Bartholomäus, et al. “Direct Arylation of Benzene with Aryl Bromides Using High‐temperature/High‐pressure Process Windows: Expanding the Scope of C-H Activation Chemistry.” Chemistry – A European Journal, vol. 18, no. 16, Wiley, 2012, pp. 5047–55, doi:10.1002/chem.201103748.","short":"B. Pieber, D. Cantillo, C.O. Kappe, Chemistry – A European Journal 18 (2012) 5047–5055.","ieee":"B. Pieber, D. Cantillo, and C. O. Kappe, “Direct arylation of benzene with aryl bromides using high‐temperature/high‐pressure process windows: Expanding the scope of C-H activation chemistry,” Chemistry – A European Journal, vol. 18, no. 16. Wiley, pp. 5047–5055, 2012.","ama":"Pieber B, Cantillo D, Kappe CO. Direct arylation of benzene with aryl bromides using high‐temperature/high‐pressure process windows: Expanding the scope of C-H activation chemistry. Chemistry – A European Journal. 2012;18(16):5047-5055. doi:10.1002/chem.201103748","apa":"Pieber, B., Cantillo, D., & Kappe, C. O. (2012). Direct arylation of benzene with aryl bromides using high‐temperature/high‐pressure process windows: Expanding the scope of C-H activation chemistry. Chemistry – A European Journal. Wiley. https://doi.org/10.1002/chem.201103748"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"id":"93e5e5b2-0da6-11ed-8a41-af589a024726","first_name":"Bartholomäus","orcid":"0000-0001-8689-388X","full_name":"Pieber, Bartholomäus","last_name":"Pieber"},{"full_name":"Cantillo, David","last_name":"Cantillo","first_name":"David"},{"last_name":"Kappe","full_name":"Kappe, C. Oliver","first_name":"C. Oliver"}],"external_id":{"pmid":["22396386"]},"article_processing_charge":"No","title":"Direct arylation of benzene with aryl bromides using high‐temperature/high‐pressure process windows: Expanding the scope of C-H activation chemistry","abstract":[{"lang":"eng","text":"A detailed investigation on the direct arylation of benzene with aryl bromides by using first-row transition metals under high-temperature/high-pressure (high-T/p) conditions is described. By employing a parallel reactor platform for rapid reaction screening and discovery at elevated temperatures, various metal/ligand/base combinations were evaluated for their ability to enable biaryl formation through C-H activation. The combination of cobalt(III) acetylacetonate and lithium bis(trimethylsilyl)amide was subjected to further process intensification at 200 °C (15 bar), allowing a significant reduction of the catalyst/base loading and a dramatic increase in catalytic efficiency (turnover frequency) by a factor of 1000 compared to traditional protocols. The high-throughput screening additionally identified novel nickel- and copper-based metal/ligand combinations that favored an amination pathway competing with C-H activation, with the addition of ligands, such as 1,10-phenanthroline, having a profound influence on the selectivity. In addition to metal-based catalysts, high-T/p process windows were also successfully applied to transition-metal-free systems, utilizing 1,10-phenanthroline as organocatalyst."}],"pmid":1,"oa_version":"None","scopus_import":"1","month":"04","intvolume":" 18","publication_identifier":{"eissn":["1521-3765"],"issn":["0947-6539"]},"publication_status":"published","language":[{"iso":"eng"}],"volume":18,"issue":"16","_id":"11964","type":"journal_article","article_type":"original","status":"public","date_updated":"2023-02-21T10:09:35Z","extern":"1"},{"intvolume":" 18","month":"05","scopus_import":"1","oa_version":"None","pmid":1,"abstract":[{"text":"Peroxides and ethers in flow: 2-Carbonyl-substituted phenols and β-ketoesters react safely with ethers in a microreactor environment using a copper catalyst and an organic peroxide (TBHP). This protocol results in unsymmetrical acetal scaffolds not easily available otherwise (see scheme).","lang":"eng"}],"volume":18,"issue":"20","language":[{"iso":"eng"}],"publication_status":"published","publication_identifier":{"eissn":["1521-3765"],"issn":["0947-6539"]},"status":"public","type":"journal_article","article_type":"letter_note","_id":"11963","extern":"1","date_updated":"2023-02-21T10:09:33Z","quality_controlled":"1","publisher":"Wiley","date_created":"2022-08-24T12:33:05Z","date_published":"2012-05-14T00:00:00Z","doi":"10.1002/chem.201200815","page":"6124-6128","publication":"Chemistry - A European Journal","day":"14","year":"2012","title":"Copper-catalyzed formation of C-O bonds by direct α-C-H bond activation of ethers using stoichiometric amounts of peroxide in batch and continuous-flow formats","external_id":{"pmid":["22492535"]},"article_processing_charge":"No","author":[{"first_name":"G. Sathish","last_name":"Kumar","full_name":"Kumar, G. Sathish"},{"id":"93e5e5b2-0da6-11ed-8a41-af589a024726","first_name":"Bartholomäus","last_name":"Pieber","orcid":"0000-0001-8689-388X","full_name":"Pieber, Bartholomäus"},{"first_name":"K. Rajender","last_name":"Reddy","full_name":"Reddy, K. Rajender"},{"first_name":"C. Oliver","full_name":"Kappe, C. Oliver","last_name":"Kappe"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ista":"Kumar GS, Pieber B, Reddy KR, Kappe CO. 2012. Copper-catalyzed formation of C-O bonds by direct α-C-H bond activation of ethers using stoichiometric amounts of peroxide in batch and continuous-flow formats. Chemistry - A European Journal. 18(20), 6124–6128.","chicago":"Kumar, G. Sathish, Bartholomäus Pieber, K. Rajender Reddy, and C. Oliver Kappe. “Copper-Catalyzed Formation of C-O Bonds by Direct α-C-H Bond Activation of Ethers Using Stoichiometric Amounts of Peroxide in Batch and Continuous-Flow Formats.” Chemistry - A European Journal. Wiley, 2012. https://doi.org/10.1002/chem.201200815.","ieee":"G. S. Kumar, B. Pieber, K. R. Reddy, and C. O. Kappe, “Copper-catalyzed formation of C-O bonds by direct α-C-H bond activation of ethers using stoichiometric amounts of peroxide in batch and continuous-flow formats,” Chemistry - A European Journal, vol. 18, no. 20. Wiley, pp. 6124–6128, 2012.","short":"G.S. Kumar, B. Pieber, K.R. Reddy, C.O. Kappe, Chemistry - A European Journal 18 (2012) 6124–6128.","ama":"Kumar GS, Pieber B, Reddy KR, Kappe CO. Copper-catalyzed formation of C-O bonds by direct α-C-H bond activation of ethers using stoichiometric amounts of peroxide in batch and continuous-flow formats. Chemistry - A European Journal. 2012;18(20):6124-6128. doi:10.1002/chem.201200815","apa":"Kumar, G. S., Pieber, B., Reddy, K. R., & Kappe, C. O. (2012). Copper-catalyzed formation of C-O bonds by direct α-C-H bond activation of ethers using stoichiometric amounts of peroxide in batch and continuous-flow formats. Chemistry - A European Journal. Wiley. https://doi.org/10.1002/chem.201200815","mla":"Kumar, G. Sathish, et al. “Copper-Catalyzed Formation of C-O Bonds by Direct α-C-H Bond Activation of Ethers Using Stoichiometric Amounts of Peroxide in Batch and Continuous-Flow Formats.” Chemistry - A European Journal, vol. 18, no. 20, Wiley, 2012, pp. 6124–28, doi:10.1002/chem.201200815."}},{"type":"journal_article","article_type":"original","status":"public","_id":"12644","date_updated":"2023-02-21T09:38:36Z","extern":"1","scopus_import":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1029/2011WR010559"}],"month":"03","intvolume":" 48","abstract":[{"text":"In the Dry Andes of central Chile, summer water resources originate mostly from snowmelt and ice melt. We use the physically based, spatially distributed hydrological model TOPKAPI to study the exchange between glaciers and climate in the upper Aconcagua River Basin during the summer season and identify the model parameters that are robust and transferable and those that are more dependent on calibration. TOPKAPI has recently been adapted to incorporate an enhanced temperature index approach for snow and ice melting. We suggest a calibration procedure that allows calibration of parameters in three steps by separating parameters governing distinct processes. We evaluate the parameters' transferability in time and in space by applying the model at two spatial scales. TOPKAPI's ability to simulate the relevant processes is tested against meteorological, ablation, and glacier runoff data measured on Juncal Norte Glacier during two glacier ablation seasons. The model was applied successfully to the climatic setting of the Dry Andes once its parameters were recalibrated. We found a clear distinction between parameters that are stable in time and those that need recalibration. The parameters of the melt model are transferable from one season to the other, while the parameters governing the extrapolation of meteorological input data and the routing of glacier meltwater need recalibration from one season to the other. Sensitivity analysis revealed that the model is most sensitive to the temperature lapse rate governing the extrapolation of air temperature from point measurements to the glacier scale and to the melt parameter that multiplies the shortwave radiation balance.","lang":"eng"}],"oa_version":"Published Version","volume":48,"issue":"3","publication_identifier":{"issn":["0043-1397"]},"publication_status":"published","language":[{"iso":"eng"}],"article_number":"W03509","author":[{"last_name":"Ragettli","full_name":"Ragettli, S.","first_name":"S."},{"id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","first_name":"Francesca","full_name":"Pellicciotti, Francesca","last_name":"Pellicciotti"}],"article_processing_charge":"No","title":"Calibration of a physically based, spatially distributed hydrological model in a glacierized basin: On the use of knowledge from glaciometeorological processes to constrain model parameters","citation":{"mla":"Ragettli, S., and Francesca Pellicciotti. “Calibration of a Physically Based, Spatially Distributed Hydrological Model in a Glacierized Basin: On the Use of Knowledge from Glaciometeorological Processes to Constrain Model Parameters.” Water Resources Research, vol. 48, no. 3, W03509, American Geophysical Union, 2012, doi:10.1029/2011wr010559.","ama":"Ragettli S, Pellicciotti F. Calibration of a physically based, spatially distributed hydrological model in a glacierized basin: On the use of knowledge from glaciometeorological processes to constrain model parameters. Water Resources Research. 2012;48(3). doi:10.1029/2011wr010559","apa":"Ragettli, S., & Pellicciotti, F. (2012). Calibration of a physically based, spatially distributed hydrological model in a glacierized basin: On the use of knowledge from glaciometeorological processes to constrain model parameters. Water Resources Research. American Geophysical Union. https://doi.org/10.1029/2011wr010559","short":"S. Ragettli, F. Pellicciotti, Water Resources Research 48 (2012).","ieee":"S. Ragettli and F. Pellicciotti, “Calibration of a physically based, spatially distributed hydrological model in a glacierized basin: On the use of knowledge from glaciometeorological processes to constrain model parameters,” Water Resources Research, vol. 48, no. 3. American Geophysical Union, 2012.","chicago":"Ragettli, S., and Francesca Pellicciotti. “Calibration of a Physically Based, Spatially Distributed Hydrological Model in a Glacierized Basin: On the Use of Knowledge from Glaciometeorological Processes to Constrain Model Parameters.” Water Resources Research. American Geophysical Union, 2012. https://doi.org/10.1029/2011wr010559.","ista":"Ragettli S, Pellicciotti F. 2012. Calibration of a physically based, spatially distributed hydrological model in a glacierized basin: On the use of knowledge from glaciometeorological processes to constrain model parameters. Water Resources Research. 48(3), W03509."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","publisher":"American Geophysical Union","quality_controlled":"1","oa":1,"doi":"10.1029/2011wr010559","date_published":"2012-03-01T00:00:00Z","date_created":"2023-02-20T08:17:39Z","year":"2012","day":"01","publication":"Water Resources Research"},{"intvolume":" 32","month":"02","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1659/MRD-JOURNAL-D-11-00092.1"}],"scopus_import":"1","oa_version":"Published Version","abstract":[{"text":"Assessment of water resources from remote mountainous catchments plays a crucial role for the development of rural areas in or in the vicinity of mountain ranges. The scarcity of data, however, prevents the application of standard approaches that are based on data-driven models. The Hindu Kush–Karakoram–Himalaya mountain range is a crucial area in terms of water resources, but our understanding of the response of its high-elevation catchments to a changing climate is hindered by lack of hydro-meteorological and cryospheric data. Hydrological modeling is challenging here because internal inconsistencies—such as an underestimation of precipitation input that can be compensated for by an overestimation of meltwater—might be hidden due to the complexity of feedback mechanisms that govern melt and runoff generation in such basins. Data scarcity adds to this difficulty by preventing the application of systematic calibration procedures that would allow identification of the parameter set that could guarantee internal consistency in the simulation of the single hydrological components. In this work, we use simulations from the Hunza River Basin in the Karakoram region obtained with the hydrological model TOPKAPI to quantify the predictive power of discharge and snow-cover data sets, as well as the combination of both. We also show that short-term measurements of meteorological variables such as radiative fluxes, wind speed, relative humidity, and air temperature from glacio-meteorological experiments are crucial for a correct parameterization of surface melt processes. They enable detailed simulations of the energy fluxes governing glacier–atmosphere interaction and the resulting ablation through energy-balance modeling. These simulations are used to derive calibrated parameters for the simplified snow and glacier routines in TOPKAPI. We demonstrate that such parameters are stable in space and time in similar climatic regions, thus reducing the number of parameters requiring calibration.","lang":"eng"}],"volume":32,"issue":"1","language":[{"iso":"eng"}],"publication_status":"published","publication_identifier":{"issn":["0276-4741"],"eissn":["1994-7151"]},"status":"public","article_type":"original","type":"journal_article","_id":"12646","extern":"1","date_updated":"2023-02-21T09:31:54Z","oa":1,"quality_controlled":"1","publisher":"International Mountain Society","date_created":"2023-02-20T08:17:47Z","date_published":"2012-02-01T00:00:00Z","doi":"10.1659/mrd-journal-d-11-00092.1","page":"39-50","publication":"Mountain Research and Development","day":"01","year":"2012","title":"Challenges and uncertainties in hydrological modeling of remote Hindu Kush–Karakoram–Himalayan (HKH) basins: Suggestions for calibration strategies","article_processing_charge":"No","author":[{"last_name":"Pellicciotti","full_name":"Pellicciotti, Francesca","first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70"},{"first_name":"Cyrill","full_name":"Buergi, Cyrill","last_name":"Buergi"},{"last_name":"Immerzeel","full_name":"Immerzeel, Walter Willem","first_name":"Walter Willem"},{"first_name":"Markus","full_name":"Konz, Markus","last_name":"Konz"},{"last_name":"Shrestha","full_name":"Shrestha, Arun B.","first_name":"Arun B."}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"mla":"Pellicciotti, Francesca, et al. “Challenges and Uncertainties in Hydrological Modeling of Remote Hindu Kush–Karakoram–Himalayan (HKH) Basins: Suggestions for Calibration Strategies.” Mountain Research and Development, vol. 32, no. 1, International Mountain Society, 2012, pp. 39–50, doi:10.1659/mrd-journal-d-11-00092.1.","ieee":"F. Pellicciotti, C. Buergi, W. W. Immerzeel, M. Konz, and A. B. Shrestha, “Challenges and uncertainties in hydrological modeling of remote Hindu Kush–Karakoram–Himalayan (HKH) basins: Suggestions for calibration strategies,” Mountain Research and Development, vol. 32, no. 1. International Mountain Society, pp. 39–50, 2012.","short":"F. Pellicciotti, C. Buergi, W.W. Immerzeel, M. Konz, A.B. Shrestha, Mountain Research and Development 32 (2012) 39–50.","ama":"Pellicciotti F, Buergi C, Immerzeel WW, Konz M, Shrestha AB. Challenges and uncertainties in hydrological modeling of remote Hindu Kush–Karakoram–Himalayan (HKH) basins: Suggestions for calibration strategies. Mountain Research and Development. 2012;32(1):39-50. doi:10.1659/mrd-journal-d-11-00092.1","apa":"Pellicciotti, F., Buergi, C., Immerzeel, W. W., Konz, M., & Shrestha, A. B. (2012). Challenges and uncertainties in hydrological modeling of remote Hindu Kush–Karakoram–Himalayan (HKH) basins: Suggestions for calibration strategies. Mountain Research and Development. International Mountain Society. https://doi.org/10.1659/mrd-journal-d-11-00092.1","chicago":"Pellicciotti, Francesca, Cyrill Buergi, Walter Willem Immerzeel, Markus Konz, and Arun B. Shrestha. “Challenges and Uncertainties in Hydrological Modeling of Remote Hindu Kush–Karakoram–Himalayan (HKH) Basins: Suggestions for Calibration Strategies.” Mountain Research and Development. International Mountain Society, 2012. https://doi.org/10.1659/mrd-journal-d-11-00092.1.","ista":"Pellicciotti F, Buergi C, Immerzeel WW, Konz M, Shrestha AB. 2012. Challenges and uncertainties in hydrological modeling of remote Hindu Kush–Karakoram–Himalayan (HKH) basins: Suggestions for calibration strategies. Mountain Research and Development. 32(1), 39–50."}},{"publisher":"International Mountain Society","quality_controlled":"1","oa":1,"year":"2012","day":"01","publication":"Mountain Research and Development","page":"30-38","doi":"10.1659/mrd-journal-d-11-00097.1","date_published":"2012-02-01T00:00:00Z","date_created":"2023-02-20T08:17:52Z","citation":{"ista":"Immerzeel WW, Pellicciotti F, Shrestha AB. 2012. Glaciers as a proxy to quantify the spatial distribution of precipitation in the Hunza basin. Mountain Research and Development. 32(1), 30–38.","chicago":"Immerzeel, Walter Willem, Francesca Pellicciotti, and Arun B. Shrestha. “Glaciers as a Proxy to Quantify the Spatial Distribution of Precipitation in the Hunza Basin.” Mountain Research and Development. International Mountain Society, 2012. https://doi.org/10.1659/mrd-journal-d-11-00097.1.","ama":"Immerzeel WW, Pellicciotti F, Shrestha AB. Glaciers as a proxy to quantify the spatial distribution of precipitation in the Hunza basin. Mountain Research and Development. 2012;32(1):30-38. doi:10.1659/mrd-journal-d-11-00097.1","apa":"Immerzeel, W. W., Pellicciotti, F., & Shrestha, A. B. (2012). Glaciers as a proxy to quantify the spatial distribution of precipitation in the Hunza basin. Mountain Research and Development. International Mountain Society. https://doi.org/10.1659/mrd-journal-d-11-00097.1","ieee":"W. W. Immerzeel, F. Pellicciotti, and A. B. Shrestha, “Glaciers as a proxy to quantify the spatial distribution of precipitation in the Hunza basin,” Mountain Research and Development, vol. 32, no. 1. International Mountain Society, pp. 30–38, 2012.","short":"W.W. Immerzeel, F. Pellicciotti, A.B. Shrestha, Mountain Research and Development 32 (2012) 30–38.","mla":"Immerzeel, Walter Willem, et al. “Glaciers as a Proxy to Quantify the Spatial Distribution of Precipitation in the Hunza Basin.” Mountain Research and Development, vol. 32, no. 1, International Mountain Society, 2012, pp. 30–38, doi:10.1659/mrd-journal-d-11-00097.1."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","author":[{"first_name":"Walter Willem","full_name":"Immerzeel, Walter Willem","last_name":"Immerzeel"},{"first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","full_name":"Pellicciotti, Francesca","last_name":"Pellicciotti"},{"first_name":"Arun B.","full_name":"Shrestha, Arun B.","last_name":"Shrestha"}],"article_processing_charge":"No","title":"Glaciers as a proxy to quantify the spatial distribution of precipitation in the Hunza basin","abstract":[{"lang":"eng","text":"Accurate quantification of the spatial distribution of precipitation in mountain regions is crucial for assessments of water resources and for the understanding of high-altitude hydrology, yet it is one of the largest unknowns due to the lack of high-altitude observations. The Hunza basin in Pakistan contains very large glacier systems, which, given the melt, cannot persist unless precipitation (snow input) is much higher than what is observed at the meteorological stations, mostly located in mountain valleys. Several studies, therefore, suggest strong positive vertical precipitation lapse rates; in the present study, we quantify this lapse rate by using glaciers as a proxy. We assume a neutral mass balance for the glaciers for the period from 2001 to 2003, and we inversely model the precipitation lapse by balancing the total accumulation in the catchment area and the ablation over the glacier area for the 50 largest glacier systems in the Hunza basin in the Karakoram. Our results reveal a vertical precipitation lapse rate that equals 0.21 ± 0.12% m−1, with a maximum precipitation at an elevation of 5500 masl. We showed that the total annual basin precipitation (828 mm) is 260% higher than what is estimated based on interpolated observations (319 mm); this has major consequences for hydrological modeling and water resource assessments in general. Our results were validated by using previously published studies on individual glaciers as well as the water balance of the Hunza basin. The approach is more widely applicable in mountain ranges where precipitation measurements at high altitude are lacking."}],"oa_version":"Published Version","scopus_import":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1659/MRD-JOURNAL-D-11-00097.1"}],"month":"02","intvolume":" 32","publication_identifier":{"eissn":["1994-7151"],"issn":["0276-4741"]},"publication_status":"published","language":[{"iso":"eng"}],"issue":"1","volume":32,"_id":"12647","type":"journal_article","article_type":"original","status":"public","keyword":["General Environmental Science","Development","Environmental Chemistry"],"date_updated":"2023-02-21T08:56:29Z","extern":"1"},{"article_processing_charge":"No","author":[{"first_name":"T. D.","last_name":"Reid","full_name":"Reid, T. D."},{"full_name":"Carenzo, M.","last_name":"Carenzo","first_name":"M."},{"first_name":"Francesca","id":"b28f055a-81ea-11ed-b70c-a9fe7f7b0e70","last_name":"Pellicciotti","full_name":"Pellicciotti, Francesca"},{"first_name":"B. W.","full_name":"Brock, B. W.","last_name":"Brock"}],"title":"Including debris cover effects in a distributed model of glacier ablation","citation":{"apa":"Reid, T. D., Carenzo, M., Pellicciotti, F., & Brock, B. W. (2012). Including debris cover effects in a distributed model of glacier ablation. Journal of Geophysical Research: Atmospheres. American Geophysical Union. https://doi.org/10.1029/2012jd017795","ama":"Reid TD, Carenzo M, Pellicciotti F, Brock BW. Including debris cover effects in a distributed model of glacier ablation. Journal of Geophysical Research: Atmospheres. 2012;117(D18). doi:10.1029/2012jd017795","ieee":"T. D. Reid, M. Carenzo, F. Pellicciotti, and B. W. Brock, “Including debris cover effects in a distributed model of glacier ablation,” Journal of Geophysical Research: Atmospheres, vol. 117, no. D18. American Geophysical Union, 2012.","short":"T.D. Reid, M. Carenzo, F. Pellicciotti, B.W. Brock, Journal of Geophysical Research: Atmospheres 117 (2012).","mla":"Reid, T. D., et al. “Including Debris Cover Effects in a Distributed Model of Glacier Ablation.” Journal of Geophysical Research: Atmospheres, vol. 117, no. D18, D18105, American Geophysical Union, 2012, doi:10.1029/2012jd017795.","ista":"Reid TD, Carenzo M, Pellicciotti F, Brock BW. 2012. Including debris cover effects in a distributed model of glacier ablation. Journal of Geophysical Research: Atmospheres. 117(D18), D18105.","chicago":"Reid, T. D., M. Carenzo, Francesca Pellicciotti, and B. W. Brock. “Including Debris Cover Effects in a Distributed Model of Glacier Ablation.” Journal of Geophysical Research: Atmospheres. American Geophysical Union, 2012. https://doi.org/10.1029/2012jd017795."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"D18105","date_created":"2023-02-20T08:17:57Z","date_published":"2012-09-27T00:00:00Z","doi":"10.1029/2012jd017795","year":"2012","publication":"Journal of Geophysical Research: Atmospheres","day":"27","oa":1,"publisher":"American Geophysical Union","quality_controlled":"1","date_updated":"2023-02-20T10:57:31Z","extern":"1","type":"journal_article","article_type":"original","keyword":["Paleontology","Space and Planetary Science","Earth and Planetary Sciences (miscellaneous)","Atmospheric Science","Earth-Surface Processes","Geochemistry and Petrology","Soil Science","Water Science and Technology","Ecology","Aquatic Science","Forestry","Oceanography","Geophysics"],"status":"public","_id":"12648","volume":117,"issue":"D18","publication_status":"published","publication_identifier":{"issn":["0148-0227"]},"language":[{"iso":"eng"}],"main_file_link":[{"url":"https://doi.org/10.1029/2012JD017795","open_access":"1"}],"scopus_import":"1","intvolume":" 117","month":"09","abstract":[{"lang":"eng","text":"Distributed glacier melt models generally assume that the glacier surface consists of bare exposed ice and snow. In reality, many glaciers are wholly or partially covered in layers of debris that tend to suppress ablation rates. In this paper, an existing physically based point model for the ablation of debris-covered ice is incorporated in a distributed melt model and applied to Haut Glacier d'Arolla, Switzerland, which has three large patches of debris cover on its surface. The model is based on a 10 m resolution digital elevation model (DEM) of the area; each glacier pixel in the DEM is defined as either bare or debris-covered ice, and may be covered in snow that must be melted off before ice ablation is assumed to occur. Each debris-covered pixel is assigned a debris thickness value using probability distributions based on over 1000 manual thickness measurements. Locally observed meteorological data are used to run energy balance calculations in every pixel, using an approach suitable for snow, bare ice or debris-covered ice as appropriate. The use of the debris model significantly reduces the total ablation in the debris-covered areas, however the precise reduction is sensitive to the temperature extrapolation used in the model distribution because air near the debris surface tends to be slightly warmer than over bare ice. Overall results suggest that the debris patches, which cover 10% of the glacierized area, reduce total runoff from the glacierized part of the basin by up to 7%."}],"oa_version":"Published Version"},{"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","citation":{"ama":"Beyer D, Henzinger TA, Keremoglu M, Wendler P. Conditional model checking: A technique to pass information between verifiers. In: Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering. ACM; 2012. doi:10.1145/2393596.2393664","apa":"Beyer, D., Henzinger, T. A., Keremoglu, M., & Wendler, P. (2012). Conditional model checking: A technique to pass information between verifiers. In Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering. Cary, NC, USA: ACM. https://doi.org/10.1145/2393596.2393664","short":"D. Beyer, T.A. Henzinger, M. Keremoglu, P. Wendler, in:, Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering, ACM, 2012.","ieee":"D. Beyer, T. A. Henzinger, M. Keremoglu, and P. Wendler, “Conditional model checking: A technique to pass information between verifiers,” in Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering, Cary, NC, USA, 2012.","mla":"Beyer, Dirk, et al. “Conditional Model Checking: A Technique to Pass Information between Verifiers.” Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering, 57, ACM, 2012, doi:10.1145/2393596.2393664.","ista":"Beyer D, Henzinger TA, Keremoglu M, Wendler P. 2012. Conditional model checking: A technique to pass information between verifiers. Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering. FSE: Foundations of Software Engineering, 57.","chicago":"Beyer, Dirk, Thomas A Henzinger, Mehmet Keremoglu, and Philipp Wendler. “Conditional Model Checking: A Technique to Pass Information between Verifiers.” In Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering. ACM, 2012. https://doi.org/10.1145/2393596.2393664."},"title":"Conditional model checking: A technique to pass information between verifiers","publist_id":"5826","author":[{"full_name":"Beyer, Dirk","last_name":"Beyer","first_name":"Dirk"},{"first_name":"Thomas A","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","last_name":"Henzinger","full_name":"Henzinger, Thomas A","orcid":"0000−0002−2985−7724"},{"full_name":"Keremoglu, Mehmet","last_name":"Keremoglu","first_name":"Mehmet"},{"first_name":"Philipp","last_name":"Wendler","full_name":"Wendler, Philipp"}],"article_number":"57","project":[{"grant_number":"267989","name":"Quantitative Reactive Modeling","call_identifier":"FP7","_id":"25EE3708-B435-11E9-9278-68D0E5697425"},{"grant_number":"S 11407_N23","name":"Rigorous Systems Engineering","call_identifier":"FWF","_id":"25832EC2-B435-11E9-9278-68D0E5697425"}],"publication":"Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering","day":"01","year":"2012","date_created":"2018-12-11T11:51:42Z","date_published":"2012-11-01T00:00:00Z","doi":"10.1145/2393596.2393664","acknowledgement":"This research was supported by the Canadian NSERC grant RGPIN 341819-07, the ERC Advanced Grant QUAREM, and the Austrian Science Fund NFN RiSE.","oa":1,"publisher":"ACM","quality_controlled":"1","date_updated":"2021-01-12T06:50:18Z","department":[{"_id":"ToHe"}],"_id":"1384","status":"public","conference":{"start_date":"2012-11-11","end_date":"2012-11-16","location":"Cary, NC, USA","name":"FSE: Foundations of Software Engineering"},"type":"conference","language":[{"iso":"eng"}],"publication_status":"published","ec_funded":1,"oa_version":"Preprint","abstract":[{"text":"Software model checking, as an undecidable problem, has three possible outcomes: (1) the program satisfies the specification, (2) the program does not satisfy the specification, and (3) the model checker fails. The third outcome usually manifests itself in a space-out, time-out, or one component of the verification tool giving up; in all of these failing cases, significant computation is performed by the verification tool before the failure, but no result is reported. We propose to reformulate the model-checking problem as follows, in order to have the verification tool report a summary of the performed work even in case of failure: given a program and a specification, the model checker returns a condition Ψ - usually a state predicate - such that the program satisfies the specification under the condition Ψ - that is, as long as the program does not leave the states in which Ψ is satisfied. In our experiments, we investigated as one major application of conditional model checking the sequential combination of model checkers with information passing. We give the condition that one model checker produces, as input to a second conditional model checker, such that the verification problem for the second is restricted to the part of the state space that is not covered by the condition, i.e., the second model checker works on the problems that the first model checker could not solve. Our experiments demonstrate that repeated application of conditional model checkers, passing information from one model checker to the next, can significantly improve the verification results and performance, i.e., we can now verify programs that we could not verify before.","lang":"eng"}],"month":"11","main_file_link":[{"url":"http://arxiv.org/abs/1109.6926","open_access":"1"}],"scopus_import":1},{"day":"01","publication":"Annals of Mathematics","publication_status":"published","year":"2012","volume":175,"doi":"10.4007/annals.2012.175.3.7","issue":"3","date_published":"2012-05-01T00:00:00Z","date_created":"2018-12-11T11:52:13Z","page":"1329 - 1407","acknowledgement":"Mark Andrea A. de Cataldo was partially supported by N.S.A. and N.S.F. Tamás Hausel was supported by a Royal Society University Research Fellowship. Luca Migliorini was partially supported by PRIN 2007 project \"Spazi di moduli e teoria di Lie\"","abstract":[{"lang":"eng","text":"For G = GL 2, PGL 2, SL 2 we prove that the perverse filtration associated with the Hitchin map on the rational cohomology of the moduli space of twisted G-Higgs bundles on a compact Riemann surface C agrees with the weight filtration on the rational cohomology of the twisted G character variety of C when the cohomologies are identified via non-Abelian Hodge theory. The proof is accomplished by means of a study of the topology of the Hitchin map over the locus of integral spectral curves."}],"month":"05","intvolume":" 175","publisher":"Princeton University Press","quality_controlled":0,"main_file_link":[{"url":"http://arxiv.org/abs/1004.1420","open_access":"1"}],"oa":1,"extern":1,"date_updated":"2021-01-12T06:50:59Z","citation":{"apa":"De Cataldo, M., Hausel, T., & Migliorini, L. (2012). Topology of hitchin systems and Hodge theory of character varieties: The case A 1. Annals of Mathematics. Princeton University Press. https://doi.org/10.4007/annals.2012.175.3.7","ama":"De Cataldo M, Hausel T, Migliorini L. Topology of hitchin systems and Hodge theory of character varieties: The case A 1. Annals of Mathematics. 2012;175(3):1329-1407. doi:10.4007/annals.2012.175.3.7","ieee":"M. De Cataldo, T. Hausel, and L. Migliorini, “Topology of hitchin systems and Hodge theory of character varieties: The case A 1,” Annals of Mathematics, vol. 175, no. 3. Princeton University Press, pp. 1329–1407, 2012.","short":"M. De Cataldo, T. Hausel, L. Migliorini, Annals of Mathematics 175 (2012) 1329–1407.","mla":"De Cataldo, Mark, et al. “Topology of Hitchin Systems and Hodge Theory of Character Varieties: The Case A 1.” Annals of Mathematics, vol. 175, no. 3, Princeton University Press, 2012, pp. 1329–407, doi:10.4007/annals.2012.175.3.7.","ista":"De Cataldo M, Hausel T, Migliorini L. 2012. Topology of hitchin systems and Hodge theory of character varieties: The case A 1. Annals of Mathematics. 175(3), 1329–1407.","chicago":"De Cataldo, Mark, Tamás Hausel, and Luca Migliorini. “Topology of Hitchin Systems and Hodge Theory of Character Varieties: The Case A 1.” Annals of Mathematics. Princeton University Press, 2012. https://doi.org/10.4007/annals.2012.175.3.7."},"title":"Topology of hitchin systems and Hodge theory of character varieties: The case A 1","publist_id":"5727","author":[{"first_name":"Mark","last_name":"De Cataldo","full_name":"De Cataldo, Mark A"},{"first_name":"Tamas","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","full_name":"Tamas Hausel","last_name":"Hausel"},{"first_name":"Luca","last_name":"Migliorini","full_name":"Migliorini, Luca"}],"_id":"1472","status":"public","type":"journal_article"},{"abstract":[{"text":"Given a possibly reducible and non-reduced spectral cover π: X → C over a smooth projective complex curve C we determine the group of connected components of the Prym variety Prym(X/C). As an immediate application we show that the finite group of n-torsion points of the Jacobian of C acts trivially on the cohomology of the twisted SL n-Higgs moduli space up to the degree which is predicted by topological mirror symmetry. In particular this yields a new proof of a result of Harder-Narasimhan, showing that this finite group acts trivially on the cohomology of the twisted SL n stable bundle moduli space.","lang":"eng"}],"main_file_link":[{"url":"http://arxiv.org/abs/1012.4748","open_access":"1"}],"oa":1,"quality_controlled":0,"publisher":"University of Warwick","intvolume":" 16","month":"08","publication_status":"published","year":"2012","publication":"Geometry and Topology","day":"01","page":"1609 - 1638","date_created":"2018-12-11T11:52:13Z","issue":"3","volume":16,"date_published":"2012-08-01T00:00:00Z","doi":"10.2140/gt.2012.16.1609","_id":"1471","type":"journal_article","status":"public","date_updated":"2021-01-12T06:50:58Z","citation":{"chicago":"Hausel, Tamás, and Christian Pauly. “Prym Varieties of Spectral Covers.” Geometry and Topology. University of Warwick, 2012. https://doi.org/10.2140/gt.2012.16.1609.","ista":"Hausel T, Pauly C. 2012. Prym varieties of spectral covers. Geometry and Topology. 16(3), 1609–1638.","mla":"Hausel, Tamás, and Christian Pauly. “Prym Varieties of Spectral Covers.” Geometry and Topology, vol. 16, no. 3, University of Warwick, 2012, pp. 1609–38, doi:10.2140/gt.2012.16.1609.","ama":"Hausel T, Pauly C. Prym varieties of spectral covers. Geometry and Topology. 2012;16(3):1609-1638. doi:10.2140/gt.2012.16.1609","apa":"Hausel, T., & Pauly, C. (2012). Prym varieties of spectral covers. Geometry and Topology. University of Warwick. https://doi.org/10.2140/gt.2012.16.1609","short":"T. Hausel, C. Pauly, Geometry and Topology 16 (2012) 1609–1638.","ieee":"T. Hausel and C. Pauly, “Prym varieties of spectral covers,” Geometry and Topology, vol. 16, no. 3. University of Warwick, pp. 1609–1638, 2012."},"extern":1,"author":[{"last_name":"Hausel","full_name":"Tamas Hausel","id":"4A0666D8-F248-11E8-B48F-1D18A9856A87","first_name":"Tamas"},{"last_name":"Pauly","full_name":"Pauly, Christian","first_name":"Christian"}],"publist_id":"5726","title":"Prym varieties of spectral covers"},{"issue":"680","doi":"https://doi.org/10.1515/crelle.2012.039","volume":2013,"date_published":"2012-04-03T00:00:00Z","date_created":"2018-12-11T11:45:00Z","page":"1 - 65","day":"03","publication":"Journal fur die Reine und Angewandte Mathematik","publication_status":"published","year":"2012","month":"04","intvolume":" 2013","quality_controlled":0,"publisher":"Walter de Gruyter","main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1011.3434"}],"oa":1,"abstract":[{"lang":"eng","text":"For given non-zero integers a, b, q we investigate the density of solutions (x, y) ∈ ℤ2 to the binary cubic congruence ax2 + by3 ≡ 0 mod q, and use it to establish the Manin conjecture for a singular del Pezzo surface of degree 2 defined over ℚ."}],"title":"Inhomogeneous cubic congruences and rational points on del Pezzo surfaces","publist_id":"7750","author":[{"last_name":"Browning","orcid":"0000-0002-8314-0177","full_name":"Timothy Browning","id":"35827D50-F248-11E8-B48F-1D18A9856A87","first_name":"Timothy D"},{"first_name":"Stephan","full_name":"Baier, Stephan","last_name":"Baier"}],"extern":1,"date_updated":"2021-01-12T06:52:41Z","citation":{"mla":"Browning, Timothy D., and Stephan Baier. “Inhomogeneous Cubic Congruences and Rational Points on Del Pezzo Surfaces.” Journal Fur Die Reine Und Angewandte Mathematik, vol. 2013, no. 680, Walter de Gruyter, 2012, pp. 1–65, doi:https://doi.org/10.1515/crelle.2012.039.","short":"T.D. Browning, S. Baier, Journal Fur Die Reine Und Angewandte Mathematik 2013 (2012) 1–65.","ieee":"T. D. Browning and S. Baier, “Inhomogeneous cubic congruences and rational points on del Pezzo surfaces,” Journal fur die Reine und Angewandte Mathematik, vol. 2013, no. 680. Walter de Gruyter, pp. 1–65, 2012.","apa":"Browning, T. D., & Baier, S. (2012). Inhomogeneous cubic congruences and rational points on del Pezzo surfaces. Journal Fur Die Reine Und Angewandte Mathematik. Walter de Gruyter. https://doi.org/10.1515/crelle.2012.039","ama":"Browning TD, Baier S. Inhomogeneous cubic congruences and rational points on del Pezzo surfaces. Journal fur die Reine und Angewandte Mathematik. 2012;2013(680):1-65. doi:https://doi.org/10.1515/crelle.2012.039","chicago":"Browning, Timothy D, and Stephan Baier. “Inhomogeneous Cubic Congruences and Rational Points on Del Pezzo Surfaces.” Journal Fur Die Reine Und Angewandte Mathematik. Walter de Gruyter, 2012. https://doi.org/10.1515/crelle.2012.039.","ista":"Browning TD, Baier S. 2012. Inhomogeneous cubic congruences and rational points on del Pezzo surfaces. Journal fur die Reine und Angewandte Mathematik. 2013(680), 1–65."},"status":"public","type":"journal_article","_id":"171"},{"publist_id":"5404","author":[{"last_name":"Kicheva","orcid":"0000-0003-4509-4998","full_name":"Anna Kicheva","first_name":"Anna","id":"3959A2A0-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Michael","last_name":"Cohen","full_name":"Cohen, Michael H"},{"first_name":"James","last_name":"Briscoe","full_name":"Briscoe, James"}],"title":"Developmental pattern formation: Insights from physics and biology","date_updated":"2021-01-12T06:52:47Z","citation":{"chicago":"Kicheva, Anna, Michael Cohen, and James Briscoe. “Developmental Pattern Formation: Insights from Physics and Biology.” Science. American Association for the Advancement of Science, 2012. https://doi.org/10.1126/science.1225182.","ista":"Kicheva A, Cohen M, Briscoe J. 2012. Developmental pattern formation: Insights from physics and biology. Science. 338(6104), 210–212.","mla":"Kicheva, Anna, et al. “Developmental Pattern Formation: Insights from Physics and Biology.” Science, vol. 338, no. 6104, American Association for the Advancement of Science, 2012, pp. 210–12, doi:10.1126/science.1225182.","short":"A. Kicheva, M. Cohen, J. Briscoe, Science 338 (2012) 210–212.","ieee":"A. Kicheva, M. Cohen, and J. Briscoe, “Developmental pattern formation: Insights from physics and biology,” Science, vol. 338, no. 6104. American Association for the Advancement of Science, pp. 210–212, 2012.","ama":"Kicheva A, Cohen M, Briscoe J. Developmental pattern formation: Insights from physics and biology. Science. 2012;338(6104):210-212. doi:10.1126/science.1225182","apa":"Kicheva, A., Cohen, M., & Briscoe, J. (2012). Developmental pattern formation: Insights from physics and biology. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1225182"},"extern":1,"type":"journal_article","status":"public","_id":"1725","page":"210 - 212","date_published":"2012-10-12T00:00:00Z","volume":338,"doi":"10.1126/science.1225182","issue":"6104","date_created":"2018-12-11T11:53:40Z","year":"2012","publication_status":"published","day":"12","publication":"Science","publisher":"American Association for the Advancement of Science","quality_controlled":0,"month":"10","intvolume":" 338","abstract":[{"text":"The spatial organization of cell fates during development involves the interpretation of morphogen gradients by cellular signaling cascades and transcriptional networks. Recent studies use biophysical models, genetics, and quantitative imaging to unravel how tissue-level morphogen behavior arises from subcellular events. Moreover, data from several systems show that morphogen gradients, downstream signaling, and the activity of cell-intrinsic transcriptional networks change dynamically during pattern formation. Studies from Drosophila and now also vertebrates suggest that transcriptional network dynamics are central to the generation of gene expression patterns. Together, this leads to the view that pattern formation is an emergent behavior that results from the coordination of events occurring across molecular, cellular, and tissue scales. The development of novel approaches to study this complex process remains a challenge.","lang":"eng"}],"acknowledgement":"Funding provided by the Medical Research Council (UK). "},{"abstract":[{"lang":"eng","text":"Self-assembled Ge wires with a height of only 3 unit cells and a length of up to 2 micrometers were grown on Si(001) by means of a catalyst-free method based on molecular beam epitaxy. The wires grow horizontally along either the [100] or the [010] direction. On atomically flat surfaces, they exhibit a highly uniform, triangular cross section. A simple thermodynamic model accounts for the existence of a preferential base width for longitudinal expansion, in quantitative agreement with the experimental findings. Despite the absence of intentional doping, the first transistor-type devices made from single wires show low-resistive electrical contacts and single-hole transport at sub-Kelvin temperatures. In view of their exceptionally small and self-defined cross section, these Ge wires hold promise for the realization of hole systems with exotic properties and provide a new development route for silicon-based nanoelectronics."}],"acknowledgement":"We acknowledge the financial support by the DFG SPP1386, P. Chen and D. J. Thurmer for MBE assistance, R. Wacquez for providing the ultrathin SOI wafers, and G. Bauer, Y. Hu, X. Jehl, S. Kiravittaya, C. Klöffel, E. J. H. Lee, F. Liu, D. Loss, and S. Mahapatra for helpful discussions. G. K. acknowledges support from the European commission via a Marie Curie Carrer Integration Grant. S. D. F. acknowledges support from the European Research Council through the starting grant program","oa":1,"main_file_link":[{"url":"http://arxiv.org/abs/1208.0666","open_access":"1"}],"quality_controlled":0,"publisher":"American Physical Society","intvolume":" 109","month":"08","publication_status":"published","year":"2012","publication":"Physical Review Letters","day":"23","date_created":"2018-12-11T11:53:51Z","doi":"10.1103/PhysRevLett.109.085502","volume":109,"issue":"8","date_published":"2012-08-23T00:00:00Z","_id":"1757","type":"journal_article","status":"public","date_updated":"2021-01-12T06:53:00Z","citation":{"ista":"Zhang J, Katsaros G, Montalenti F, Scopece D, Rezaev R, Mickel C, Rellinghaus B, Miglio L, De Franceschi S, Rastelli A, Schmidt O. 2012. Monolithic growth of ultrathin Ge nanowires on Si(001) . Physical Review Letters. 109(8).","chicago":"Zhang, Jianjun, Georgios Katsaros, Francesco Montalenti, Daniele Scopece, Roman Rezaev, Christine Mickel, Bernd Rellinghaus, et al. “Monolithic Growth of Ultrathin Ge Nanowires on Si(001) .” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/PhysRevLett.109.085502.","ama":"Zhang J, Katsaros G, Montalenti F, et al. Monolithic growth of ultrathin Ge nanowires on Si(001) . Physical Review Letters. 2012;109(8). doi:10.1103/PhysRevLett.109.085502","apa":"Zhang, J., Katsaros, G., Montalenti, F., Scopece, D., Rezaev, R., Mickel, C., … Schmidt, O. (2012). Monolithic growth of ultrathin Ge nanowires on Si(001) . Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.109.085502","ieee":"J. Zhang et al., “Monolithic growth of ultrathin Ge nanowires on Si(001) ,” Physical Review Letters, vol. 109, no. 8. American Physical Society, 2012.","short":"J. Zhang, G. Katsaros, F. Montalenti, D. Scopece, R. Rezaev, C. Mickel, B. Rellinghaus, L. Miglio, S. De Franceschi, A. Rastelli, O. Schmidt, Physical Review Letters 109 (2012).","mla":"Zhang, Jianjun, et al. “Monolithic Growth of Ultrathin Ge Nanowires on Si(001) .” Physical Review Letters, vol. 109, no. 8, American Physical Society, 2012, doi:10.1103/PhysRevLett.109.085502."},"extern":1,"author":[{"first_name":"Jianjun","last_name":"Zhang","full_name":"Zhang, Jianjun"},{"id":"38DB5788-F248-11E8-B48F-1D18A9856A87","first_name":"Georgios","last_name":"Katsaros","full_name":"Georgios Katsaros"},{"last_name":"Montalenti","full_name":"Montalenti, Francesco","first_name":"Francesco"},{"last_name":"Scopece","full_name":"Scopece, Daniele","first_name":"Daniele"},{"first_name":"Roman","full_name":"Rezaev, Roman O","last_name":"Rezaev"},{"last_name":"Mickel","full_name":"Mickel, Christine H","first_name":"Christine"},{"last_name":"Rellinghaus","full_name":"Rellinghaus, Bernd","first_name":"Bernd"},{"first_name":"Leo","full_name":"Miglio, Leo P","last_name":"Miglio"},{"first_name":"Silvano","last_name":"De Franceschi","full_name":"De Franceschi, Silvano"},{"first_name":"Armando","full_name":"Rastelli, Armando","last_name":"Rastelli"},{"first_name":"Oliver","full_name":"Schmidt, Oliver G","last_name":"Schmidt"}],"publist_id":"5367","title":"Monolithic growth of ultrathin Ge nanowires on Si(001) "},{"_id":"1758","type":"journal_article","status":"public","date_updated":"2021-01-12T06:53:01Z","citation":{"chicago":"Lee, Eduardo, Xiaocheng Jiang, Ramón Aguado, Georgios Katsaros, Charles Lieber, and Silvano De Franceschi. “Zero-Bias Anomaly in a Nanowire Quantum Dot Coupled to Superconductors.” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/PhysRevLett.109.186802.","ista":"Lee E, Jiang X, Aguado R, Katsaros G, Lieber C, De Franceschi S. 2012. Zero-bias anomaly in a nanowire quantum dot coupled to superconductors. Physical Review Letters. 109(18).","mla":"Lee, Eduardo, et al. “Zero-Bias Anomaly in a Nanowire Quantum Dot Coupled to Superconductors.” Physical Review Letters, vol. 109, no. 18, American Physical Society, 2012, doi:10.1103/PhysRevLett.109.186802.","apa":"Lee, E., Jiang, X., Aguado, R., Katsaros, G., Lieber, C., & De Franceschi, S. (2012). Zero-bias anomaly in a nanowire quantum dot coupled to superconductors. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.109.186802","ama":"Lee E, Jiang X, Aguado R, Katsaros G, Lieber C, De Franceschi S. Zero-bias anomaly in a nanowire quantum dot coupled to superconductors. Physical Review Letters. 2012;109(18). doi:10.1103/PhysRevLett.109.186802","short":"E. Lee, X. Jiang, R. Aguado, G. Katsaros, C. Lieber, S. De Franceschi, Physical Review Letters 109 (2012).","ieee":"E. Lee, X. Jiang, R. Aguado, G. Katsaros, C. Lieber, and S. De Franceschi, “Zero-bias anomaly in a nanowire quantum dot coupled to superconductors,” Physical Review Letters, vol. 109, no. 18. American Physical Society, 2012."},"extern":1,"author":[{"last_name":"Lee","full_name":"Lee, Eduardo J","first_name":"Eduardo"},{"first_name":"Xiaocheng","last_name":"Jiang","full_name":"Jiang, Xiaocheng"},{"last_name":"Aguado","full_name":"Aguado, Ramón","first_name":"Ramón"},{"id":"38DB5788-F248-11E8-B48F-1D18A9856A87","first_name":"Georgios","full_name":"Georgios Katsaros","last_name":"Katsaros"},{"full_name":"Lieber, Charles M","last_name":"Lieber","first_name":"Charles"},{"first_name":"Silvano","full_name":"De Franceschi, Silvano","last_name":"De Franceschi"}],"publist_id":"5366","title":"Zero-bias anomaly in a nanowire quantum dot coupled to superconductors","abstract":[{"lang":"eng","text":"We studied the low-energy states of spin-1/2 quantum dots defined in InAs/InP nanowires and coupled to aluminum superconducting leads. By varying the superconducting gap Δ with a magnetic field B we investigated the transition from strong coupling Δ≪T K to weak-coupling Δ≫T K, where T K is the Kondo temperature. Below the critical field, we observe a persisting zero-bias Kondo resonance that vanishes only for low B or higher temperatures, leaving the room to more robust subgap structures at bias voltages between Δ and 2Δ. For strong and approximately symmetric tunnel couplings, a Josephson supercurrent is observed in addition to the Kondo peak. We ascribe the coexistence of a Kondo resonance and a superconducting gap to a significant density of intragap quasiparticle states, and the finite-bias subgap structures to tunneling through Shiba states. Our results, supported by numerical calculations, own relevance also in relation to tunnel-spectroscopy experiments aiming at the observation of Majorana fermions in hybrid nanostructures."}],"acknowledgement":"This work was supported by the EU Marie Curie program and by the Agence Nationale de la Recherche. R. A. acknowledges support from the Spanish Ministry of Science and Innovation through Grant No. FIS2009-08744","publisher":"American Physical Society","quality_controlled":0,"oa":1,"main_file_link":[{"url":"http://arxiv.org/abs/1207.1259","open_access":"1"}],"month":"10","intvolume":" 109","publication_status":"published","year":"2012","day":"31","publication":"Physical Review Letters","date_published":"2012-10-31T00:00:00Z","doi":"10.1103/PhysRevLett.109.186802","volume":109,"issue":"18","date_created":"2018-12-11T11:53:51Z"},{"title":"Multifunctional devices and logic gates with undoped silicon nanowires","author":[{"last_name":"Mongillo","full_name":"Mongillo, Massimo","first_name":"Massimo"},{"full_name":"Spathis, Panayotis N","last_name":"Spathis","first_name":"Panayotis"},{"id":"38DB5788-F248-11E8-B48F-1D18A9856A87","first_name":"Georgios","full_name":"Georgios Katsaros","last_name":"Katsaros"},{"first_name":"Pascal","full_name":"Gentile, Pascal","last_name":"Gentile"},{"first_name":"Silvano","full_name":"De Franceschi, Silvano","last_name":"De Franceschi"}],"publist_id":"5368","extern":1,"date_updated":"2021-01-12T06:53:00Z","citation":{"ieee":"M. Mongillo, P. Spathis, G. Katsaros, P. Gentile, and S. De Franceschi, “Multifunctional devices and logic gates with undoped silicon nanowires,” Nano Letters, vol. 12, no. 6. American Chemical Society, pp. 3074–3079, 2012.","short":"M. Mongillo, P. Spathis, G. Katsaros, P. Gentile, S. De Franceschi, Nano Letters 12 (2012) 3074–3079.","ama":"Mongillo M, Spathis P, Katsaros G, Gentile P, De Franceschi S. Multifunctional devices and logic gates with undoped silicon nanowires. Nano Letters. 2012;12(6):3074-3079. doi:10.1021/nl300930m","apa":"Mongillo, M., Spathis, P., Katsaros, G., Gentile, P., & De Franceschi, S. (2012). Multifunctional devices and logic gates with undoped silicon nanowires. Nano Letters. American Chemical Society. https://doi.org/10.1021/nl300930m","mla":"Mongillo, Massimo, et al. “Multifunctional Devices and Logic Gates with Undoped Silicon Nanowires.” Nano Letters, vol. 12, no. 6, American Chemical Society, 2012, pp. 3074–79, doi:10.1021/nl300930m.","ista":"Mongillo M, Spathis P, Katsaros G, Gentile P, De Franceschi S. 2012. Multifunctional devices and logic gates with undoped silicon nanowires. Nano Letters. 12(6), 3074–3079.","chicago":"Mongillo, Massimo, Panayotis Spathis, Georgios Katsaros, Pascal Gentile, and Silvano De Franceschi. “Multifunctional Devices and Logic Gates with Undoped Silicon Nanowires.” Nano Letters. American Chemical Society, 2012. https://doi.org/10.1021/nl300930m."},"status":"public","type":"journal_article","_id":"1756","issue":"6","doi":"10.1021/nl300930m","volume":12,"date_published":"2012-06-13T00:00:00Z","date_created":"2018-12-11T11:53:50Z","page":"3074 - 3079","day":"13","publication":"Nano Letters","year":"2012","publication_status":"published","month":"06","intvolume":" 12","quality_controlled":0,"publisher":"American Chemical Society","oa":1,"main_file_link":[{"url":"http://arxiv.org/abs/1208.1465","open_access":"1"}],"acknowledgement":"This work was supported by the Agence Nationale de la Recherche (ANR) through the ACCESS and COHESION projects and by the European Commission through the Chemtronics program MEST-CT-2005-020513","abstract":[{"text":"We report on the electronic transport properties of multiple-gate devices fabricated from undoped silicon nanowires. Understanding and control of the relevant transport mechanisms was achieved by means of local electrostatic gating and temperature-dependent measurements. The roles of the source/drain contacts and of the silicon channel could be independently evaluated and tuned. Wrap gates surrounding the silicide-silicon contact interfaces were proved to be effective in inducing a full suppression of the contact Schottky barriers, thereby enabling carrier injection down to liquid helium temperature. By independently tuning the effective Schottky barrier heights, a variety of reconfigurable device functionalities could be obtained. In particular, the same nanowire device could be configured to work as a Schottky barrier transistor, a Schottky diode, or a p-n diode with tunable polarities. This versatility was eventually exploited to realize a NAND logic gate with gain well above one.","lang":"eng"}]},{"abstract":[{"text":"Nonlinearity and entanglement are two important properties by which physical systems can be identified as nonclassical. We study the dynamics of the resonant interaction of up to N=3 two-level systems and a single mode of the electromagnetic field sharing a single excitation dynamically. We observe coherent vacuum Rabi oscillations and their nonlinear √N speedup by tracking the populations of all qubits and the resonator in time. We use quantum state tomography to show explicitly that the dynamics generates maximally entangled states of the W class in a time limited only by the collective interaction rate. We use an entanglement witness and the 3-tangle to characterize the state whose fidelity F=78% is limited in our experiments by crosstalk arising during the simultaneous qubit manipulations which is absent in a sequential approach with F=91%.","lang":"eng"}],"acknowledgement":"This work was supported by the Swiss National Science Foundation (SNF) and the EU IP SOLID","publisher":"American Physical Society","quality_controlled":0,"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1202.5191"}],"oa":1,"month":"11","intvolume":" 86","publication_status":"published","year":"2012","day":"30","publication":"Physical Review A - Atomic, Molecular, and Optical Physics","date_published":"2012-11-30T00:00:00Z","issue":"5","doi":"10.1103/PhysRevA.86.053838","volume":86,"date_created":"2018-12-11T11:53:59Z","_id":"1783","type":"journal_article","status":"public","date_updated":"2021-01-12T06:53:10Z","citation":{"short":"J. Mlynek, A. Abdumalikov, J.M. Fink, L. Steffen, M. Baur, C. Lang, A. Van Loo, A. Wallraff, Physical Review A - Atomic, Molecular, and Optical Physics 86 (2012).","ieee":"J. Mlynek et al., “Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics,” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 86, no. 5. American Physical Society, 2012.","ama":"Mlynek J, Abdumalikov A, Fink JM, et al. Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics. Physical Review A - Atomic, Molecular, and Optical Physics. 2012;86(5). doi:10.1103/PhysRevA.86.053838","apa":"Mlynek, J., Abdumalikov, A., Fink, J. M., Steffen, L., Baur, M., Lang, C., … Wallraff, A. (2012). Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics. Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society. https://doi.org/10.1103/PhysRevA.86.053838","mla":"Mlynek, Jonas, et al. “Demonstrating W-Type Entanglement of Dicke States in Resonant Cavity Quantum Electrodynamics.” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 86, no. 5, American Physical Society, 2012, doi:10.1103/PhysRevA.86.053838.","ista":"Mlynek J, Abdumalikov A, Fink JM, Steffen L, Baur M, Lang C, Van Loo A, Wallraff A. 2012. Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics. Physical Review A - Atomic, Molecular, and Optical Physics. 86(5).","chicago":"Mlynek, Jonas, Abdufarrukh Abdumalikov, Johannes M Fink, L. Steffen, Matthias Baur, C Lang, Arjan Van Loo, and Andreas Wallraff. “Demonstrating W-Type Entanglement of Dicke States in Resonant Cavity Quantum Electrodynamics.” Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society, 2012. https://doi.org/10.1103/PhysRevA.86.053838."},"extern":1,"publist_id":"5332","author":[{"full_name":"Mlynek, Jonas A","last_name":"Mlynek","first_name":"Jonas"},{"first_name":"Abdufarrukh","last_name":"Abdumalikov","full_name":"Abdumalikov, Abdufarrukh A"},{"orcid":"0000-0001-8112-028X","full_name":"Johannes Fink","last_name":"Fink","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","first_name":"Johannes M"},{"first_name":"L.","full_name":"Steffen, L. Kraig","last_name":"Steffen"},{"last_name":"Baur","full_name":"Baur, Matthias P","first_name":"Matthias"},{"first_name":"C","full_name":"Lang, C","last_name":"Lang"},{"last_name":"Van Loo","full_name":"Van Loo, Arjan F","first_name":"Arjan"},{"first_name":"Andreas","full_name":"Wallraff, Andreas","last_name":"Wallraff"}],"title":"Demonstrating W-type entanglement of Dicke states in resonant cavity quantum electrodynamics"},{"title":"Geometric phase and nonadiabatic effects in an electronic harmonic oscillator","publist_id":"5333","author":[{"first_name":"M","last_name":"Pechal","full_name":"Pechal, M"},{"first_name":"Stefan","full_name":"Berger, Stefan T","last_name":"Berger"},{"full_name":"Abdumalikov, Abdufarrukh A","last_name":"Abdumalikov","first_name":"Abdufarrukh"},{"full_name":"Johannes Fink","orcid":"0000-0001-8112-028X","last_name":"Fink","id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","first_name":"Johannes M"},{"first_name":"Jonas","last_name":"Mlynek","full_name":"Mlynek, Jonas A"},{"first_name":"L.","full_name":"Steffen, L. Kraig","last_name":"Steffen"},{"first_name":"Andreas","last_name":"Wallraff","full_name":"Wallraff, Andreas"},{"last_name":"Filipp","full_name":"Filipp, Stefan","first_name":"Stefan"}],"extern":1,"date_updated":"2021-01-12T06:53:10Z","citation":{"ieee":"M. Pechal et al., “Geometric phase and nonadiabatic effects in an electronic harmonic oscillator,” Physical Review Letters, vol. 108, no. 17. American Physical Society, 2012.","short":"M. Pechal, S. Berger, A. Abdumalikov, J.M. Fink, J. Mlynek, L. Steffen, A. Wallraff, S. Filipp, Physical Review Letters 108 (2012).","ama":"Pechal M, Berger S, Abdumalikov A, et al. Geometric phase and nonadiabatic effects in an electronic harmonic oscillator. Physical Review Letters. 2012;108(17). doi:10.1103/PhysRevLett.108.170401","apa":"Pechal, M., Berger, S., Abdumalikov, A., Fink, J. M., Mlynek, J., Steffen, L., … Filipp, S. (2012). Geometric phase and nonadiabatic effects in an electronic harmonic oscillator. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.108.170401","mla":"Pechal, M., et al. “Geometric Phase and Nonadiabatic Effects in an Electronic Harmonic Oscillator.” Physical Review Letters, vol. 108, no. 17, American Physical Society, 2012, doi:10.1103/PhysRevLett.108.170401.","ista":"Pechal M, Berger S, Abdumalikov A, Fink JM, Mlynek J, Steffen L, Wallraff A, Filipp S. 2012. Geometric phase and nonadiabatic effects in an electronic harmonic oscillator. Physical Review Letters. 108(17).","chicago":"Pechal, M, Stefan Berger, Abdufarrukh Abdumalikov, Johannes M Fink, Jonas Mlynek, L. Steffen, Andreas Wallraff, and Stefan Filipp. “Geometric Phase and Nonadiabatic Effects in an Electronic Harmonic Oscillator.” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/PhysRevLett.108.170401."},"status":"public","type":"journal_article","_id":"1782","date_published":"2012-04-23T00:00:00Z","volume":108,"doi":"10.1103/PhysRevLett.108.170401","issue":"17","date_created":"2018-12-11T11:53:59Z","day":"23","publication":"Physical Review Letters","year":"2012","publication_status":"published","month":"04","intvolume":" 108","publisher":"American Physical Society","quality_controlled":0,"oa":1,"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1109.1157"}],"acknowledgement":"This work is supported by the EU project GEOMDISS, the Austrian Science Foundation (S. F.), and the Swiss National Science Foundation (SNSF)","abstract":[{"lang":"eng","text":"Steering a quantum harmonic oscillator state along cyclic trajectories leads to a path-dependent geometric phase. Here we describe its experimental observation in an electronic harmonic oscillator. We use a superconducting qubit as a nonlinear probe of the phase, which is otherwise unobservable due to the linearity of the oscillator. We show that the geometric phase is, for a variety of cyclic paths, proportional to the area enclosed in the quadrature plane. At the transition to the nonadiabatic regime, we study corrections to the phase and dephasing of the qubit caused by qubit-resonator entanglement. In particular, we identify parameters for which this dephasing mechanism is negligible even in the nonadiabatic regime. The demonstrated controllability makes our system a versatile tool to study geometric phases in open quantum systems and to investigate their potential for quantum information processing."}]},{"year":"2012","publication_status":"published","day":"10","publication":"Physical Review Letters","issue":"24","doi":"10.1103/PhysRevLett.109.240501","volume":109,"date_published":"2012-12-10T00:00:00Z","date_created":"2018-12-11T11:53:59Z","abstract":[{"text":"A localized qubit entangled with a propagating quantum field is well suited to study nonlocal aspects of quantum mechanics and may also provide a channel to communicate between spatially separated nodes in a quantum network. Here, we report the on-demand generation and characterization of Bell-type entangled states between a superconducting qubit and propagating microwave fields composed of zero-, one-, and two-photon Fock states. Using low noise linear amplification and efficient data acquisition we extract all relevant correlations between the qubit and the photon states and demonstrate entanglement with high fidelity.","lang":"eng"}],"acknowledgement":"This work was supported by the European Research Council (ERC) through a Starting Grant and by ETHZ","publisher":"American Physical Society","quality_controlled":0,"main_file_link":[{"open_access":"0","url":"http://arxiv.org/abs/1209.0441"}],"month":"12","intvolume":" 109","citation":{"ista":"Eichler C, Lang C, Fink JM, Govenius J, Filipp S, Wallraff A. 2012. Observation of entanglement between itinerant microwave photons and a superconducting qubit. Physical Review Letters. 109(24).","chicago":"Eichler, Christopher, C Lang, Johannes M Fink, J Govenius, Stefan Filipp, and Andreas Wallraff. “Observation of Entanglement between Itinerant Microwave Photons and a Superconducting Qubit.” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/PhysRevLett.109.240501.","ama":"Eichler C, Lang C, Fink JM, Govenius J, Filipp S, Wallraff A. Observation of entanglement between itinerant microwave photons and a superconducting qubit. Physical Review Letters. 2012;109(24). doi:10.1103/PhysRevLett.109.240501","apa":"Eichler, C., Lang, C., Fink, J. M., Govenius, J., Filipp, S., & Wallraff, A. (2012). Observation of entanglement between itinerant microwave photons and a superconducting qubit. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.109.240501","short":"C. Eichler, C. Lang, J.M. Fink, J. Govenius, S. Filipp, A. Wallraff, Physical Review Letters 109 (2012).","ieee":"C. Eichler, C. Lang, J. M. Fink, J. Govenius, S. Filipp, and A. Wallraff, “Observation of entanglement between itinerant microwave photons and a superconducting qubit,” Physical Review Letters, vol. 109, no. 24. American Physical Society, 2012.","mla":"Eichler, Christopher, et al. “Observation of Entanglement between Itinerant Microwave Photons and a Superconducting Qubit.” Physical Review Letters, vol. 109, no. 24, American Physical Society, 2012, doi:10.1103/PhysRevLett.109.240501."},"date_updated":"2021-01-12T06:53:10Z","extern":1,"author":[{"first_name":"Christopher","full_name":"Eichler, Christopher","last_name":"Eichler"},{"last_name":"Lang","full_name":"Lang, C","first_name":"C"},{"id":"4B591CBA-F248-11E8-B48F-1D18A9856A87","first_name":"Johannes M","full_name":"Johannes Fink","orcid":"0000-0001-8112-028X","last_name":"Fink"},{"last_name":"Govenius","full_name":"Govenius, J","first_name":"J"},{"full_name":"Filipp, Stefan","last_name":"Filipp","first_name":"Stefan"},{"last_name":"Wallraff","full_name":"Wallraff, Andreas","first_name":"Andreas"}],"publist_id":"5330","title":"Observation of entanglement between itinerant microwave photons and a superconducting qubit","_id":"1784","type":"journal_article","status":"public"},{"_id":"1801","status":"public","type":"journal_article","extern":1,"date_updated":"2021-01-12T06:53:17Z","citation":{"ista":"Siegert S, Cabuy E, Scherf B, Kohler H, Panda S, Le Y, Fehling H, Gaidatzis D, Stadler M, Roska B. 2012. Transcriptional code and disease map for adult retinal cell types. Nature Neuroscience. 15(3), 487–495.","chicago":"Siegert, Sandra, Erik Cabuy, Brigitte Scherf, Hubertus Kohler, Satchidananda Panda, Yunzheng Le, Hans Fehling, Dimos Gaidatzis, Michael Stadler, and Botond Roska. “Transcriptional Code and Disease Map for Adult Retinal Cell Types.” Nature Neuroscience. Nature Publishing Group, 2012. https://doi.org/10.1038/nn.3032.","ieee":"S. Siegert et al., “Transcriptional code and disease map for adult retinal cell types,” Nature Neuroscience, vol. 15, no. 3. Nature Publishing Group, pp. 487–495, 2012.","short":"S. Siegert, E. Cabuy, B. Scherf, H. Kohler, S. Panda, Y. Le, H. Fehling, D. Gaidatzis, M. Stadler, B. Roska, Nature Neuroscience 15 (2012) 487–495.","ama":"Siegert S, Cabuy E, Scherf B, et al. Transcriptional code and disease map for adult retinal cell types. Nature Neuroscience. 2012;15(3):487-495. doi:10.1038/nn.3032","apa":"Siegert, S., Cabuy, E., Scherf, B., Kohler, H., Panda, S., Le, Y., … Roska, B. (2012). Transcriptional code and disease map for adult retinal cell types. Nature Neuroscience. Nature Publishing Group. https://doi.org/10.1038/nn.3032","mla":"Siegert, Sandra, et al. “Transcriptional Code and Disease Map for Adult Retinal Cell Types.” Nature Neuroscience, vol. 15, no. 3, Nature Publishing Group, 2012, pp. 487–95, doi:10.1038/nn.3032."},"title":"Transcriptional code and disease map for adult retinal cell types","author":[{"orcid":"0000-0001-8635-0877","full_name":"Sandra Siegert","last_name":"Siegert","first_name":"Sandra","id":"36ACD32E-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Cabuy, Erik","last_name":"Cabuy","first_name":"Erik"},{"first_name":"Brigitte","last_name":"Scherf","full_name":"Scherf, Brigitte G"},{"first_name":"Hubertus","full_name":"Kohler, Hubertus","last_name":"Kohler"},{"first_name":"Satchidananda","full_name":"Panda, Satchidananda","last_name":"Panda"},{"last_name":"Le","full_name":"Le, Yunzheng","first_name":"Yunzheng"},{"first_name":"Hans","last_name":"Fehling","full_name":"Fehling, Hans J"},{"last_name":"Gaidatzis","full_name":"Gaidatzis, Dimos","first_name":"Dimos"},{"full_name":"Stadler, Michael B","last_name":"Stadler","first_name":"Michael"},{"first_name":"Botond","last_name":"Roska","full_name":"Roska, Botond M"}],"publist_id":"5309","acknowledgement":"The study was supported by Friedrich Miescher Institute funds, Alcon award, a National Center of Competence in Research Genetics grant, a European Research Council grant, a Swiss-Hungarian grant, and RETICIRC, TREATRUSH, SEEBETTER and OPTONEURO grants from the European Union to B.R.","abstract":[{"text":"Brain circuits are assembled from a large variety of morphologically and functionally diverse cell types. It is not known how the intermingled cell types of an individual adult brain region differ in their expressed genomes. Here we describe an atlas of cell type transcriptomes in one brain region, the mouse retina. We found that each adult cell type expressed a specific set of genes, including a unique set of transcription factors, forming a 'barcode' for cell identity. Cell type transcriptomes carried enough information to categorize cells into morphological classes and types. Several genes that were specifically expressed in particular retinal circuit elements, such as inhibitory neuron types, are associated with eye diseases. The resource described here allows gene expression to be compared across adult retinal cell types, experimenting with specific transcription factors to differentiate stem or somatic cells to retinal cell types, and predicting cellular targets of newly discovered disease-associated genes.","lang":"eng"}],"intvolume":" 15","month":"03","publisher":"Nature Publishing Group","quality_controlled":0,"publication":"Nature Neuroscience","day":"01","year":"2012","publication_status":"published","date_created":"2018-12-11T11:54:05Z","volume":15,"date_published":"2012-03-01T00:00:00Z","doi":"10.1038/nn.3032","issue":"3","page":"487 - 495"},{"month":"10","intvolume":" 1817","quality_controlled":0,"publisher":"Elsevier","acknowledgement":"The work in authors' laboratory was funded by the Medical Research Council.","abstract":[{"text":"Complex I is a key enzyme of the respiratory chain in many organisms. This multi-protein complex with an intricate evolutionary history originated from the unification of prebuilt modules of hydrogenases and transporters. Using recently determined crystallographic structures of complex I we reanalyzed evolutionarily related complexes that couple oxidoreduction to trans-membrane ion translocation. Our analysis points to the previously unnoticed structural homology of the electron input module of formate dehydrogenlyases and subunit NuoG of complex I. We also show that all related to complex I hydrogenases likely operate via a conformation driven mechanism with structural changes generated in the conserved coupling site located at the interface of subunits NuoB/D/H. The coupling apparently originated once in evolutionary history, together with subunit NuoH joining hydrogenase and transport modules. Analysis of quinone oxidoreduction properties and the structure of complex I allows us to suggest a fully reversible coupling mechanism. Our model predicts that: 1) proton access to the ketone groups of the bound quinone is rigorously controlled by the protein, 2) the negative electric charge of the anionic ubiquinol head group is a major driving force for conformational changes.","lang":"eng"}],"volume":1817,"date_published":"2012-10-01T00:00:00Z","doi":"10.1016/j.bbabio.2012.02.015","issue":"10","date_created":"2018-12-11T11:55:00Z","page":"1785 - 1795","day":"01","publication":"Biochimica et Biophysica Acta - Bioenergetics","year":"2012","publication_status":"published","status":"public","type":"review","_id":"1976","title":"The coupling mechanism of respiratory complex i - A structural and evolutionary perspective","publist_id":"5108","author":[{"full_name":"Efremov, Rouslan G","last_name":"Efremov","first_name":"Rouslan"},{"orcid":"0000-0002-0977-7989","full_name":"Leonid Sazanov","last_name":"Sazanov","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","first_name":"Leonid A"}],"extern":1,"citation":{"ista":"Efremov R, Sazanov LA. 2012. The coupling mechanism of respiratory complex i - A structural and evolutionary perspective. Biochimica et Biophysica Acta - Bioenergetics. 1817(10), 1785–1795.","chicago":"Efremov, Rouslan, and Leonid A Sazanov. “The Coupling Mechanism of Respiratory Complex i - A Structural and Evolutionary Perspective.” Biochimica et Biophysica Acta - Bioenergetics. Elsevier, 2012. https://doi.org/10.1016/j.bbabio.2012.02.015.","apa":"Efremov, R., & Sazanov, L. A. (2012). The coupling mechanism of respiratory complex i - A structural and evolutionary perspective. Biochimica et Biophysica Acta - Bioenergetics. Elsevier. https://doi.org/10.1016/j.bbabio.2012.02.015","ama":"Efremov R, Sazanov LA. The coupling mechanism of respiratory complex i - A structural and evolutionary perspective. Biochimica et Biophysica Acta - Bioenergetics. 2012;1817(10):1785-1795. doi:10.1016/j.bbabio.2012.02.015","ieee":"R. Efremov and L. A. Sazanov, “The coupling mechanism of respiratory complex i - A structural and evolutionary perspective,” Biochimica et Biophysica Acta - Bioenergetics, vol. 1817, no. 10. Elsevier, pp. 1785–1795, 2012.","short":"R. Efremov, L.A. Sazanov, Biochimica et Biophysica Acta - Bioenergetics 1817 (2012) 1785–1795.","mla":"Efremov, Rouslan, and Leonid A. Sazanov. “The Coupling Mechanism of Respiratory Complex i - A Structural and Evolutionary Perspective.” Biochimica et Biophysica Acta - Bioenergetics, vol. 1817, no. 10, Elsevier, 2012, pp. 1785–95, doi:10.1016/j.bbabio.2012.02.015."},"date_updated":"2019-04-26T07:22:06Z"},{"citation":{"ista":"Efremov R, Sazanov LA. 2012. Structure of Escherichia coli OmpF porin from lipidic mesophase. Journal of Structural Biology. 178(3), 311–318.","chicago":"Efremov, Rouslan, and Leonid A Sazanov. “Structure of Escherichia Coli OmpF Porin from Lipidic Mesophase.” Journal of Structural Biology. Academic Press, 2012. https://doi.org/10.1016/j.jsb.2012.03.005.","ama":"Efremov R, Sazanov LA. Structure of Escherichia coli OmpF porin from lipidic mesophase. Journal of Structural Biology. 2012;178(3):311-318. doi:10.1016/j.jsb.2012.03.005","apa":"Efremov, R., & Sazanov, L. A. (2012). Structure of Escherichia coli OmpF porin from lipidic mesophase. Journal of Structural Biology. Academic Press. https://doi.org/10.1016/j.jsb.2012.03.005","short":"R. Efremov, L.A. Sazanov, Journal of Structural Biology 178 (2012) 311–318.","ieee":"R. Efremov and L. A. Sazanov, “Structure of Escherichia coli OmpF porin from lipidic mesophase,” Journal of Structural Biology, vol. 178, no. 3. Academic Press, pp. 311–318, 2012.","mla":"Efremov, Rouslan, and Leonid A. Sazanov. “Structure of Escherichia Coli OmpF Porin from Lipidic Mesophase.” Journal of Structural Biology, vol. 178, no. 3, Academic Press, 2012, pp. 311–18, doi:10.1016/j.jsb.2012.03.005."},"date_updated":"2021-01-12T06:54:26Z","extern":1,"author":[{"last_name":"Efremov","full_name":"Efremov, Rouslan G","first_name":"Rouslan"},{"last_name":"Sazanov","full_name":"Leonid Sazanov","orcid":"0000-0002-0977-7989","id":"338D39FE-F248-11E8-B48F-1D18A9856A87","first_name":"Leonid A"}],"publist_id":"5109","title":"Structure of Escherichia coli OmpF porin from lipidic mesophase","_id":"1972","type":"journal_article","status":"public","publication_status":"published","year":"2012","publication":"Journal of Structural Biology","day":"01","page":"311 - 318","date_created":"2018-12-11T11:54:59Z","date_published":"2012-06-01T00:00:00Z","issue":"3","doi":"10.1016/j.jsb.2012.03.005","volume":178,"abstract":[{"lang":"eng","text":"Outer membrane protein F, a major component of the Escherichia coli outer membrane, was crystallized for the first time in lipidic mesophase of monoolein in novel space groups, P1 and H32. Due to ease of its purification and crystallization OmpF can be used as a benchmark protein for establishing membrane protein crystallization in meso, as a "membrane lyzozyme" The packing of porin trimers in the crystals of space group H32 is similar to natural outer membranes, providing the first high-resolution insight into the close to native packing of OmpF. Surprisingly, interaction between trimers is mediated exclusively by lipids, without direct protein-protein contacts. Multiple ordered lipids are observed and many of them occupy identical positions independently of the space group, identifying preferential interaction sites of lipid acyl chains. Presence of ordered aliphatic chains close to a positively charged area on the porin surface suggests a position for a lipopolysaccharide binding site on the surface of the major E. coli porins."}],"acknowledgement":"This work was funded by the Medical Research Council.","publisher":"Academic Press","quality_controlled":0,"intvolume":" 178","month":"06"},{"citation":{"mla":"Schweizer, Jakob, et al. “Geometry Sensing by Self-Organized Protein Patterns.” PNAS, vol. 109, no. 38, National Academy of Sciences, 2012, pp. 15283–88, doi:10.1073/pnas.1206953109.","short":"J. Schweizer, M. Loose, M. Bonny, K. Kruse, I. Mönch, P. Schwille, PNAS 109 (2012) 15283–15288.","ieee":"J. Schweizer, M. Loose, M. Bonny, K. Kruse, I. Mönch, and P. Schwille, “Geometry sensing by self-organized protein patterns,” PNAS, vol. 109, no. 38. National Academy of Sciences, pp. 15283–15288, 2012.","apa":"Schweizer, J., Loose, M., Bonny, M., Kruse, K., Mönch, I., & Schwille, P. (2012). Geometry sensing by self-organized protein patterns. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.1206953109","ama":"Schweizer J, Loose M, Bonny M, Kruse K, Mönch I, Schwille P. Geometry sensing by self-organized protein patterns. PNAS. 2012;109(38):15283-15288. doi:10.1073/pnas.1206953109","chicago":"Schweizer, Jakob, Martin Loose, Mike Bonny, Karsten Kruse, Ingolf Mönch, and Petra Schwille. “Geometry Sensing by Self-Organized Protein Patterns.” PNAS. National Academy of Sciences, 2012. https://doi.org/10.1073/pnas.1206953109.","ista":"Schweizer J, Loose M, Bonny M, Kruse K, Mönch I, Schwille P. 2012. Geometry sensing by self-organized protein patterns. PNAS. 109(38), 15283–15288."},"date_updated":"2021-01-12T06:54:31Z","extern":1,"publist_id":"5096","author":[{"last_name":"Schweizer","full_name":"Schweizer, Jakob","first_name":"Jakob"},{"id":"462D4284-F248-11E8-B48F-1D18A9856A87","first_name":"Martin","last_name":"Loose","orcid":"0000-0001-7309-9724","full_name":"Martin Loose"},{"last_name":"Bonny","full_name":"Bonny, Mike ","first_name":"Mike"},{"first_name":"Karsten","full_name":"Kruse, Karsten","last_name":"Kruse"},{"first_name":"Ingolf","last_name":"Mönch","full_name":"Mönch, Ingolf"},{"last_name":"Schwille","full_name":"Schwille, Petra ","first_name":"Petra"}],"title":"Geometry sensing by self-organized protein patterns","_id":"1987","type":"journal_article","status":"public","year":"2012","publication_status":"published","day":"18","publication":"PNAS","page":"15283 - 15288","doi":"10.1073/pnas.1206953109","issue":"38","date_published":"2012-09-18T00:00:00Z","volume":109,"date_created":"2018-12-11T11:55:04Z","abstract":[{"lang":"eng","text":"In the living cell, proteins are able to organize space much larger than their dimensions. In return, changes of intracellular space can influence biochemical reactions, allowing cells to sense their size and shape. Despite the possibility to reconstitute protein self-organization with only a few purified components, we still lack knowledge of how geometrical boundaries affect spatiotemporal protein patterns. Following a minimal systems approach, we used purified proteins and photolithographically patterned membranes to study the influence of spatial confinement on the self-organization of the Min system, a spatial regulator of bacterial cytokinesis, in vitro. We found that the emerging protein pattern responds even to the lateral, two-dimensional geometry of the membrane such that, as in the three-dimensional cell, Min protein waves travel along the longest axis of the membrane patch. This shows that for spatial sensing the Min system does not need to be enclosed in a three-dimensional compartment. Using a computational model we quantitatively analyzed our experimental findings and identified persistent binding of MinE to the membrane as requirement for the Min system to sense geometry. Our results give insight into the interplay between geometrical confinement and biochemical patterns emerging from a nonlinear reaction-diffusion system.\n"}],"acknowledgement":"This work was supported by the Max-Planck-Society (P.S. and M.L.) and by the German Research Foundation as part of the Research Training Group “Nano- and Biotechnologies for Electronic Device Packaging” (GRK 1401) (J.S.) and by the Leibniz-Award (P.S.). ","publisher":"National Academy of Sciences","quality_controlled":0,"month":"09","intvolume":" 109"},{"project":[{"grant_number":"259668","name":"Provable Security for Physical Cryptography","call_identifier":"FP7","_id":"258C570E-B435-11E9-9278-68D0E5697425"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ista":"Faust S, Pietrzak KZ, Schipper J. 2012. Practical leakage-resilient symmetric cryptography. Conference proceedings CHES 2012. CHES: Cryptographic Hardware and Embedded Systems, LNCS, vol. 7428, 213–232.","chicago":"Faust, Sebastian, Krzysztof Z Pietrzak, and Joachim Schipper. “Practical Leakage-Resilient Symmetric Cryptography.” In Conference Proceedings CHES 2012, 7428:213–32. Springer, 2012. https://doi.org/10.1007/978-3-642-33027-8_13.","short":"S. Faust, K.Z. Pietrzak, J. Schipper, in:, Conference Proceedings CHES 2012, Springer, 2012, pp. 213–232.","ieee":"S. Faust, K. Z. Pietrzak, and J. Schipper, “Practical leakage-resilient symmetric cryptography,” in Conference proceedings CHES 2012, Leuven, Belgium, 2012, vol. 7428, pp. 213–232.","ama":"Faust S, Pietrzak KZ, Schipper J. Practical leakage-resilient symmetric cryptography. In: Conference Proceedings CHES 2012. Vol 7428. Springer; 2012:213-232. doi:10.1007/978-3-642-33027-8_13","apa":"Faust, S., Pietrzak, K. Z., & Schipper, J. (2012). Practical leakage-resilient symmetric cryptography. In Conference proceedings CHES 2012 (Vol. 7428, pp. 213–232). Leuven, Belgium: Springer. https://doi.org/10.1007/978-3-642-33027-8_13","mla":"Faust, Sebastian, et al. “Practical Leakage-Resilient Symmetric Cryptography.” Conference Proceedings CHES 2012, vol. 7428, Springer, 2012, pp. 213–32, doi:10.1007/978-3-642-33027-8_13."},"title":"Practical leakage-resilient symmetric cryptography","author":[{"full_name":"Faust, Sebastian","last_name":"Faust","first_name":"Sebastian"},{"first_name":"Krzysztof Z","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","full_name":"Pietrzak, Krzysztof Z","orcid":"0000-0002-9139-1654","last_name":"Pietrzak"},{"full_name":"Schipper, Joachim","last_name":"Schipper","id":"7BE863D4-E9CF-11E9-9EDB-90527418172C","first_name":"Joachim"}],"publist_id":"5003","acknowledgement":"Sebastian Faust acknowledges support from the Danish National Research Foundation and The National Science Foundation of China (under the grant 61061130540) for the Sino-Danish Center for the Theory of Interactive Computation, within part of this work was performed; and from the CFEM research center, supported by the Danish Strategic Research Council. \r\nSupported by the European Research Council/ERC Starting Grant 259668-PSPC.\r\n","publisher":"Springer","quality_controlled":"1","oa":1,"day":"01","publication":" Conference proceedings CHES 2012","year":"2012","doi":"10.1007/978-3-642-33027-8_13","date_published":"2012-09-01T00:00:00Z","date_created":"2018-12-11T11:55:25Z","page":"213 - 232","_id":"2048","status":"public","type":"conference","conference":{"name":"CHES: Cryptographic Hardware and Embedded Systems","start_date":"2012-09-09","location":"Leuven, Belgium","end_date":"2012-09-12"},"date_updated":"2021-01-12T06:54:58Z","department":[{"_id":"KrPi"}],"oa_version":"Preprint","abstract":[{"lang":"eng","text":"Leakage resilient cryptography attempts to incorporate side-channel leakage into the black-box security model and designs cryptographic schemes that are provably secure within it. Informally, a scheme is leakage-resilient if it remains secure even if an adversary learns a bounded amount of arbitrary information about the schemes internal state. Unfortunately, most leakage resilient schemes are unnecessarily complicated in order to achieve strong provable security guarantees. As advocated by Yu et al. [CCS’10], this mostly is an artefact of the security proof and in practice much simpler construction may already suffice to protect against realistic side-channel attacks. In this paper, we show that indeed for simpler constructions leakage-resilience can be obtained when we aim for relaxed security notions where the leakage-functions and/or the inputs to the primitive are chosen non-adaptively. For example, we show that a three round Feistel network instantiated with a leakage resilient PRF yields a leakage resilient PRP if the inputs are chosen non-adaptively (This complements the result of Dodis and Pietrzak [CRYPTO’10] who show that if a adaptive queries are allowed, a superlogarithmic number of rounds is necessary.) We also show that a minor variation of the classical GGM construction gives a leakage resilient PRF if both, the leakage-function and the inputs, are chosen non-adaptively."}],"month":"09","intvolume":" 7428","alternative_title":["LNCS"],"scopus_import":1,"main_file_link":[{"url":"http://www.iacr.org/archive/ches2012/74280211/74280211.pdf","open_access":"1"}],"language":[{"iso":"eng"}],"publication_status":"published","volume":7428,"ec_funded":1},{"_id":"2049","status":"public","conference":{"name":"FSE: Fast Software Encryption","location":"Washington, DC, USA","end_date":"2012-03-21","start_date":"2012-03-19"},"type":"conference","date_updated":"2021-01-12T06:54:58Z","department":[{"_id":"KrPi"}],"oa_version":"Preprint","abstract":[{"text":"We propose a new authentication protocol that is provably secure based on a ring variant of the learning parity with noise (LPN) problem. The protocol follows the design principle of the LPN-based protocol from Eurocrypt’11 (Kiltz et al.), and like it, is a two round protocol secure against active attacks. Moreover, our protocol has small communication complexity and a very small footprint which makes it applicable in scenarios that involve low-cost, resource-constrained devices.\r\n\r\nPerformance-wise, our protocol is more efficient than previous LPN-based schemes, such as the many variants of the Hopper-Blum (HB) protocol and the aforementioned protocol from Eurocrypt’11. Our implementation results show that it is even comparable to the standard challenge-and-response protocols based on the AES block-cipher. Our basic protocol is roughly 20 times slower than AES, but with the advantage of having 10 times smaller code size. Furthermore, if a few hundred bytes of non-volatile memory are available to allow the storage of some off-line pre-computations, then the online phase of our protocols is only twice as slow as AES.\r\n","lang":"eng"}],"intvolume":" 7549","month":"03","main_file_link":[{"url":"http://www.iacr.org/archive/fse2012/75490350/75490350.pdf","open_access":"1"}],"scopus_import":1,"alternative_title":["LNCS"],"language":[{"iso":"eng"}],"publication_status":"published","ec_funded":1,"volume":7549,"project":[{"call_identifier":"FP7","_id":"258C570E-B435-11E9-9278-68D0E5697425","grant_number":"259668","name":"Provable Security for Physical Cryptography"}],"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","citation":{"ista":"Heyse S, Kiltz E, Lyubashevsky V, Paar C, Pietrzak KZ. 2012. Lapin: An efficient authentication protocol based on ring-LPN. Conference proceedings FSE 2012. FSE: Fast Software Encryption, LNCS, vol. 7549, 346–365.","chicago":"Heyse, Stefan, Eike Kiltz, Vadim Lyubashevsky, Christof Paar, and Krzysztof Z Pietrzak. “Lapin: An Efficient Authentication Protocol Based on Ring-LPN.” In Conference Proceedings FSE 2012, 7549:346–65. Springer, 2012. https://doi.org/10.1007/978-3-642-34047-5_20.","ieee":"S. Heyse, E. Kiltz, V. Lyubashevsky, C. Paar, and K. Z. Pietrzak, “Lapin: An efficient authentication protocol based on ring-LPN,” in Conference proceedings FSE 2012, Washington, DC, USA, 2012, vol. 7549, pp. 346–365.","short":"S. Heyse, E. Kiltz, V. Lyubashevsky, C. Paar, K.Z. Pietrzak, in:, Conference Proceedings FSE 2012, Springer, 2012, pp. 346–365.","apa":"Heyse, S., Kiltz, E., Lyubashevsky, V., Paar, C., & Pietrzak, K. Z. (2012). Lapin: An efficient authentication protocol based on ring-LPN. In Conference proceedings FSE 2012 (Vol. 7549, pp. 346–365). Washington, DC, USA: Springer. https://doi.org/10.1007/978-3-642-34047-5_20","ama":"Heyse S, Kiltz E, Lyubashevsky V, Paar C, Pietrzak KZ. Lapin: An efficient authentication protocol based on ring-LPN. In: Conference Proceedings FSE 2012. Vol 7549. Springer; 2012:346-365. doi:10.1007/978-3-642-34047-5_20","mla":"Heyse, Stefan, et al. “Lapin: An Efficient Authentication Protocol Based on Ring-LPN.” Conference Proceedings FSE 2012, vol. 7549, Springer, 2012, pp. 346–65, doi:10.1007/978-3-642-34047-5_20."},"title":"Lapin: An efficient authentication protocol based on ring-LPN","author":[{"first_name":"Stefan","last_name":"Heyse","full_name":"Heyse, Stefan"},{"last_name":"Kiltz","full_name":"Kiltz, Eike","first_name":"Eike"},{"first_name":"Vadim","full_name":"Lyubashevsky, Vadim","last_name":"Lyubashevsky"},{"first_name":"Christof","last_name":"Paar","full_name":"Paar, Christof"},{"first_name":"Krzysztof Z","id":"3E04A7AA-F248-11E8-B48F-1D18A9856A87","full_name":"Pietrzak, Krzysztof Z","orcid":"0000-0002-9139-1654","last_name":"Pietrzak"}],"publist_id":"5002","acknowledgement":"Supported by the European Research Council / ERC Starting Grant (259668- PSPC)\r\nWe would like to thank the anonymous referees of this confer- ence and those of the ECRYPT Workshop on Lightweight Cryptography for very useful comments, and in particular for the suggestion that the scheme is somewhat vulnerable to a man-in-the-middle attack whenever an adversary observes two reader challenges that are the same. We hope that the attack we described in Appendix A corresponds to what the reviewer had in mind. We also thank Tanja Lange for pointing us to the pa- per of [Kir11] and for discussions of some of her recent work. ","oa":1,"publisher":"Springer","quality_controlled":"1","publication":" Conference proceedings FSE 2012","day":"01","year":"2012","date_created":"2018-12-11T11:55:25Z","date_published":"2012-03-01T00:00:00Z","doi":"10.1007/978-3-642-34047-5_20","page":"346 - 365"},{"abstract":[{"lang":"eng","text":"Background: Drosophila albomicans is a unique model organism for studying both sex chromosome and B chromosome evolution. A pair of its autosomes comprising roughly 40% of the whole genome has fused to the ancient X and Y chromosomes only about 0.12 million years ago, thereby creating the youngest and most gene-rich neo-sex system reported to date. This species also possesses recently derived B chromosomes that show non-Mendelian inheritance and significantly influence fertility.Methods: We sequenced male flies with B chromosomes at 124.5-fold genome coverage using next-generation sequencing. To characterize neo-Y specific changes and B chromosome sequences, we also sequenced inbred female flies derived from the same strain but without B's at 28.5-fold.Results: We assembled a female genome and placed 53% of the sequence and 85% of the annotated proteins into specific chromosomes, by comparison with the 12 Drosophila genomes. Despite its very recent origin, the non-recombining neo-Y chromosome shows various signs of degeneration, including a significant enrichment of non-functional genes compared to the neo-X, and an excess of tandem duplications relative to other chromosomes. We also characterized a B-chromosome linked scaffold that contains an actively transcribed unit and shows sequence similarity to the subcentromeric regions of both the ancient X and the neo-X chromosome.Conclusions: Our results provide novel insights into the very early stages of sex chromosome evolution and B chromosome origination, and suggest an unprecedented connection between the births of these two systems in D. albomicans."}],"intvolume":" 13","month":"03","publisher":"BioMed Central","quality_controlled":0,"publication":"BMC Genomics","day":"22","publication_status":"published","year":"2012","license":"https://creativecommons.org/licenses/by/4.0/","date_created":"2018-12-11T11:55:33Z","volume":13,"doi":"10.1186/1471-2164-13-109","date_published":"2012-03-22T00:00:00Z","issue":"1","_id":"2073","status":"public","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"type":"journal_article","extern":1,"citation":{"chicago":"Zhou, Qi, Hongmei Zhu, Quanfei Huang, Li Zhao, Guo Zhang, Scott Roy, Beatriz Vicoso, et al. “Deciphering Neo-Sex and B Chromosome Evolution by the Draft Genome of Drosophila Albomicans.” BMC Genomics. BioMed Central, 2012. https://doi.org/10.1186/1471-2164-13-109.","ista":"Zhou Q, Zhu H, Huang Q, Zhao L, Zhang G, Roy S, Vicoso B, Xuan Z, Ruan J, Zhang Y, Zhao R, Ye C, Zhang X, Wang J, Wang W, Bachtrog D. 2012. Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans. BMC Genomics. 13(1).","mla":"Zhou, Qi, et al. “Deciphering Neo-Sex and B Chromosome Evolution by the Draft Genome of Drosophila Albomicans.” BMC Genomics, vol. 13, no. 1, BioMed Central, 2012, doi:10.1186/1471-2164-13-109.","ieee":"Q. Zhou et al., “Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans,” BMC Genomics, vol. 13, no. 1. BioMed Central, 2012.","short":"Q. Zhou, H. Zhu, Q. Huang, L. Zhao, G. Zhang, S. Roy, B. Vicoso, Z. Xuan, J. Ruan, Y. Zhang, R. Zhao, C. Ye, X. Zhang, J. Wang, W. Wang, D. Bachtrog, BMC Genomics 13 (2012).","ama":"Zhou Q, Zhu H, Huang Q, et al. Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans. BMC Genomics. 2012;13(1). doi:10.1186/1471-2164-13-109","apa":"Zhou, Q., Zhu, H., Huang, Q., Zhao, L., Zhang, G., Roy, S., … Bachtrog, D. (2012). Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans. BMC Genomics. BioMed Central. https://doi.org/10.1186/1471-2164-13-109"},"date_updated":"2021-01-12T06:55:08Z","title":"Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans","author":[{"last_name":"Zhou","full_name":"Zhou, Qi","first_name":"Qi"},{"full_name":"Zhu, Hongmei","last_name":"Zhu","first_name":"Hongmei"},{"full_name":"Huang, Quanfei","last_name":"Huang","first_name":"Quanfei"},{"first_name":"Li","full_name":"Zhao, Li","last_name":"Zhao"},{"first_name":"Guo","last_name":"Zhang","full_name":"Zhang, Guo J"},{"full_name":"Roy, Scott W","last_name":"Roy","first_name":"Scott"},{"first_name":"Beatriz","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","full_name":"Beatriz Vicoso","orcid":"0000-0002-4579-8306","last_name":"Vicoso"},{"first_name":"Zhaolin","full_name":"Xuan, Zhaolin","last_name":"Xuan"},{"last_name":"Ruan","full_name":"Ruan, Jue","first_name":"Jue"},{"last_name":"Zhang","full_name":"Zhang, Yue","first_name":"Yue"},{"first_name":"Ruoping","last_name":"Zhao","full_name":"Zhao, Ruoping"},{"last_name":"Ye","full_name":"Ye, Chen","first_name":"Chen"},{"full_name":"Zhang, Xiuqing","last_name":"Zhang","first_name":"Xiuqing"},{"first_name":"Jùn","last_name":"Wang","full_name":"Wang, Jùn"},{"first_name":"Wen","last_name":"Wang","full_name":"Wang, Wen"},{"first_name":"Doris","full_name":"Bachtrog, Doris","last_name":"Bachtrog"}],"publist_id":"4965"},{"abstract":[{"text":"We introduce an algorithm and representation for fabricating 3D shape abstractions using mutually intersecting planar cut-outs. The planes have prefabricated slits at their intersections and are assembled by sliding them together. Often such abstractions are used as a sculptural art form or in architecture and are colloquially called ‘cardboard sculptures’. Based on an analysis of construction rules, we propose an extended binary space partitioning tree as an efficient representation of such cardboard models which allows us to quickly evaluate the feasibility of newly added planar elements. The complexity of insertion order quickly increases with the number of planar elements and manual analysis becomes intractable. We provide tools for generating cardboard sculptures with guaranteed constructibility. In combination with a simple optimization and sampling strategy for new elements, planar shape abstraction models can be designed by iteratively adding elements. As an output, we obtain a fabrication plan that can be printed or sent to a laser cutter. We demonstrate the complete process by designing and fabricating cardboard models of various well-known 3D shapes.","lang":"eng"}],"intvolume":" 31","month":"05","publisher":"Wiley-Blackwell","quality_controlled":0,"publication":"Computer Graphics Forum","day":"01","publication_status":"published","year":"2012","date_created":"2018-12-11T11:55:35Z","volume":31,"doi":"10.1111/j.1467-8659.2012.03037.x","date_published":"2012-05-01T00:00:00Z","issue":"2pt3","page":"583 - 592","_id":"2079","status":"public","type":"journal_article","extern":1,"date_updated":"2021-01-12T06:55:10Z","citation":{"mla":"Hildebrand, Kristian, et al. “Crdbrd: Shape Fabrication by Sliding Planar Slices.” Computer Graphics Forum, vol. 31, no. 2pt3, Wiley-Blackwell, 2012, pp. 583–92, doi:10.1111/j.1467-8659.2012.03037.x.","ieee":"K. Hildebrand, B. Bickel, and M. Alexa, “crdbrd: Shape fabrication by sliding planar slices,” Computer Graphics Forum, vol. 31, no. 2pt3. Wiley-Blackwell, pp. 583–592, 2012.","short":"K. Hildebrand, B. Bickel, M. Alexa, Computer Graphics Forum 31 (2012) 583–592.","apa":"Hildebrand, K., Bickel, B., & Alexa, M. (2012). crdbrd: Shape fabrication by sliding planar slices. Computer Graphics Forum. Wiley-Blackwell. https://doi.org/10.1111/j.1467-8659.2012.03037.x","ama":"Hildebrand K, Bickel B, Alexa M. crdbrd: Shape fabrication by sliding planar slices. Computer Graphics Forum. 2012;31(2pt3):583-592. doi:10.1111/j.1467-8659.2012.03037.x","chicago":"Hildebrand, Kristian, Bernd Bickel, and Marc Alexa. “Crdbrd: Shape Fabrication by Sliding Planar Slices.” Computer Graphics Forum. Wiley-Blackwell, 2012. https://doi.org/10.1111/j.1467-8659.2012.03037.x.","ista":"Hildebrand K, Bickel B, Alexa M. 2012. crdbrd: Shape fabrication by sliding planar slices. Computer Graphics Forum. 31(2pt3), 583–592."},"title":"crdbrd: Shape fabrication by sliding planar slices","author":[{"first_name":"Kristian","last_name":"Hildebrand","full_name":"Hildebrand, Kristian"},{"full_name":"Bernd Bickel","orcid":"0000-0001-6511-9385","last_name":"Bickel","id":"49876194-F248-11E8-B48F-1D18A9856A87","first_name":"Bernd"},{"first_name":"Marc","full_name":"Alexa, Marc","last_name":"Alexa"}],"publist_id":"4959"},{"author":[{"first_name":"Thabo","full_name":"Beeler, Thabo","last_name":"Beeler"},{"orcid":"0000-0001-6511-9385","full_name":"Bernd Bickel","last_name":"Bickel","id":"49876194-F248-11E8-B48F-1D18A9856A87","first_name":"Bernd"},{"first_name":"Gioacchino","full_name":"Noris, Gioacchino","last_name":"Noris"},{"first_name":"Paul","last_name":"Beardsley","full_name":"Beardsley, Paul A"},{"last_name":"Marschner","full_name":"Marschner, Steve","first_name":"Steve"},{"first_name":"Robert","full_name":"Sumner, Robert W","last_name":"Sumner"},{"last_name":"Groß","full_name":"Groß, Markus S","first_name":"Markus"}],"publist_id":"4932","title":"Coupled 3D reconstruction of sparse facial hair and skin","date_updated":"2021-01-12T06:55:20Z","citation":{"mla":"Beeler, Thabo, et al. “Coupled 3D Reconstruction of Sparse Facial Hair and Skin.” ACM Transactions on Graphics, vol. 31, no. 4, ACM, 2012, doi:10.1145/2185520.2185613.","ieee":"T. Beeler et al., “Coupled 3D reconstruction of sparse facial hair and skin,” ACM Transactions on Graphics, vol. 31, no. 4. ACM, 2012.","short":"T. Beeler, B. Bickel, G. Noris, P. Beardsley, S. Marschner, R. Sumner, M. Groß, ACM Transactions on Graphics 31 (2012).","apa":"Beeler, T., Bickel, B., Noris, G., Beardsley, P., Marschner, S., Sumner, R., & Groß, M. (2012). Coupled 3D reconstruction of sparse facial hair and skin. ACM Transactions on Graphics. ACM. https://doi.org/10.1145/2185520.2185613","ama":"Beeler T, Bickel B, Noris G, et al. Coupled 3D reconstruction of sparse facial hair and skin. ACM Transactions on Graphics. 2012;31(4). doi:10.1145/2185520.2185613","chicago":"Beeler, Thabo, Bernd Bickel, Gioacchino Noris, Paul Beardsley, Steve Marschner, Robert Sumner, and Markus Groß. “Coupled 3D Reconstruction of Sparse Facial Hair and Skin.” ACM Transactions on Graphics. ACM, 2012. https://doi.org/10.1145/2185520.2185613.","ista":"Beeler T, Bickel B, Noris G, Beardsley P, Marschner S, Sumner R, Groß M. 2012. Coupled 3D reconstruction of sparse facial hair and skin. ACM Transactions on Graphics. 31(4)."},"extern":1,"type":"journal_article","status":"public","_id":"2103","date_created":"2018-12-11T11:55:44Z","doi":"10.1145/2185520.2185613","issue":"4","volume":31,"date_published":"2012-01-01T00:00:00Z","year":"2012","publication_status":"published","publication":"ACM Transactions on Graphics","day":"01","quality_controlled":0,"publisher":"ACM","intvolume":" 31","month":"01","abstract":[{"lang":"eng","text":"Although facial hair plays an important role in individual expression, facial-hair reconstruction is not addressed by current facecapture systems. Our research addresses this limitation with an algorithm that treats hair and skin surface capture together in a coupled fashion so that a high-quality representation of hair fibers as well as the underlying skin surface can be reconstructed. We propose a passive, camera-based system that is robust against arbitrary motion since all data is acquired within the time period of a single exposure. Our reconstruction algorithm detects and traces hairs in the captured images and reconstructs them in 3D using a multiview stereo approach. Our coupled skin-reconstruction algorithm uses information about the detected hairs to deliver a skin surface that lies underneath all hairs irrespective of occlusions. In dense regions like eyebrows, we employ a hair-synthesis method to create hair fibers that plausibly match the image data. We demonstrate our scanning system on a number of individuals and show that it can successfully reconstruct a variety of facial-hair styles together with the underlying skin surface."}]},{"_id":"2101","type":"journal_article","status":"public","citation":{"chicago":"Bac̈Her, Moritz, Bernd Bickel, Doug James, and Hanspeter Pfister. “Fabricating Articulated Characters from Skinned Meshes.” ACM Transactions on Graphics. ACM, 2012. https://doi.org/10.1145/2185520.2185543.","ista":"Bac̈Her M, Bickel B, James D, Pfister H. 2012. Fabricating articulated characters from skinned meshes. ACM Transactions on Graphics. 31(4).","mla":"Bac̈Her, Moritz, et al. “Fabricating Articulated Characters from Skinned Meshes.” ACM Transactions on Graphics, vol. 31, no. 4, ACM, 2012, doi:10.1145/2185520.2185543.","short":"M. Bac̈Her, B. Bickel, D. James, H. Pfister, ACM Transactions on Graphics 31 (2012).","ieee":"M. Bac̈Her, B. Bickel, D. James, and H. Pfister, “Fabricating articulated characters from skinned meshes,” ACM Transactions on Graphics, vol. 31, no. 4. ACM, 2012.","apa":"Bac̈Her, M., Bickel, B., James, D., & Pfister, H. (2012). Fabricating articulated characters from skinned meshes. ACM Transactions on Graphics. ACM. https://doi.org/10.1145/2185520.2185543","ama":"Bac̈Her M, Bickel B, James D, Pfister H. Fabricating articulated characters from skinned meshes. ACM Transactions on Graphics. 2012;31(4). doi:10.1145/2185520.2185543"},"date_updated":"2021-01-12T06:55:19Z","extern":1,"author":[{"first_name":"Moritz","last_name":"Bac̈Her","full_name":"Bac̈her, Moritz"},{"first_name":"Bernd","id":"49876194-F248-11E8-B48F-1D18A9856A87","last_name":"Bickel","orcid":"0000-0001-6511-9385","full_name":"Bernd Bickel"},{"first_name":"Doug","last_name":"James","full_name":"James, Doug L"},{"first_name":"Hanspeter","full_name":"Pfister, Hanspeter","last_name":"Pfister"}],"publist_id":"4933","title":"Fabricating articulated characters from skinned meshes","abstract":[{"text":"Articulated deformable characters are widespread in computer animation. Unfortunately, we lack methods for their automatic fabrication using modern additive manufacturing (AM) technologies. We propose a method that takes a skinned mesh as input, then estimates a fabricatable single-material model that approximates the 3D kinematics of the corresponding virtual articulated character in a piecewise linear manner. We first extract a set of potential joint locations. From this set, together with optional, user-specified range constraints, we then estimate mechanical friction joints that satisfy inter-joint non-penetration and other fabrication constraints. To avoid brittle joint designs, we place joint centers on an approximate medial axis representation of the input geometry, and maximize each joint's minimal cross-sectional area. We provide several demonstrations, manufactured as single, assembled pieces using 3D printers. ","lang":"eng"}],"acknowledgement":"This work was partially supported by NSF grant IIS-1116619. Doug James acknowledges support from Pixar and a fellowship from the John Simon Guggenheim Memorial Foundation","publisher":"ACM","quality_controlled":0,"month":"01","intvolume":" 31","publication_status":"published","year":"2012","day":"01","publication":"ACM Transactions on Graphics","issue":"4","volume":31,"date_published":"2012-01-01T00:00:00Z","doi":"10.1145/2185520.2185543","date_created":"2018-12-11T11:55:43Z"},{"_id":"2102","status":"public","type":"journal_article","extern":1,"citation":{"ista":"Bickel B, Kaufmann P, Skouras M, Thomaszewski B, Bradley D, Beeler T, Jackson P, Marschner S, Matusik W, Groß M. 2012. Physical face cloning. ACM Transactions on Graphics. 31(4).","chicago":"Bickel, Bernd, Peter Kaufmann, Mélina Skouras, Bernhard Thomaszewski, Derek Bradley, Thabo Beeler, Philip Jackson, Steve Marschner, Wojciech Matusik, and Markus Groß. “Physical Face Cloning.” ACM Transactions on Graphics. ACM, 2012. https://doi.org/10.1145/2185520.2185614.","apa":"Bickel, B., Kaufmann, P., Skouras, M., Thomaszewski, B., Bradley, D., Beeler, T., … Groß, M. (2012). Physical face cloning. ACM Transactions on Graphics. ACM. https://doi.org/10.1145/2185520.2185614","ama":"Bickel B, Kaufmann P, Skouras M, et al. Physical face cloning. ACM Transactions on Graphics. 2012;31(4). doi:10.1145/2185520.2185614","ieee":"B. Bickel et al., “Physical face cloning,” ACM Transactions on Graphics, vol. 31, no. 4. ACM, 2012.","short":"B. Bickel, P. Kaufmann, M. Skouras, B. Thomaszewski, D. Bradley, T. Beeler, P. Jackson, S. Marschner, W. Matusik, M. Groß, ACM Transactions on Graphics 31 (2012).","mla":"Bickel, Bernd, et al. “Physical Face Cloning.” ACM Transactions on Graphics, vol. 31, no. 4, ACM, 2012, doi:10.1145/2185520.2185614."},"date_updated":"2021-01-12T06:55:19Z","title":"Physical face cloning","author":[{"first_name":"Bernd","id":"49876194-F248-11E8-B48F-1D18A9856A87","last_name":"Bickel","full_name":"Bernd Bickel","orcid":"0000-0001-6511-9385"},{"last_name":"Kaufmann","full_name":"Kaufmann, Peter","first_name":"Peter"},{"first_name":"Mélina","full_name":"Skouras, Mélina","last_name":"Skouras"},{"first_name":"Bernhard","last_name":"Thomaszewski","full_name":"Thomaszewski, Bernhard"},{"last_name":"Bradley","full_name":"Bradley, Derek J","first_name":"Derek"},{"full_name":"Beeler, Thabo","last_name":"Beeler","first_name":"Thabo"},{"last_name":"Jackson","full_name":"Jackson, Philip V","first_name":"Philip"},{"last_name":"Marschner","full_name":"Marschner, Steve","first_name":"Steve"},{"first_name":"Wojciech","last_name":"Matusik","full_name":"Matusik, Wojciech"},{"first_name":"Markus","last_name":"Groß","full_name":"Groß, Markus S"}],"publist_id":"4931","acknowledgement":"This work was supported in part by the NCCR Co-Me of the Swiss NSF","abstract":[{"lang":"eng","text":"We propose a complete process for designing, simulating, and fabricating synthetic skin for an animatronics character that mimics the face of a given subject and its expressions. The process starts with measuring the elastic properties of a material used to manufacture synthetic soft tissue. Given these measurements we use physicsbased simulation to predict the behavior of a face when it is driven by the underlying robotic actuation. Next, we capture 3D facial expressions for a given target subject. As the key component of our process, we present a novel optimization scheme that determines the shape of the synthetic skin as well as the actuation parameters that provide the best match to the target expressions. We demonstrate this computational skin design by physically cloning a real human face onto an animatronics figure. "}],"month":"07","intvolume":" 31","quality_controlled":0,"publisher":"ACM","day":"04","publication":"ACM Transactions on Graphics","publication_status":"published","year":"2012","issue":"4","doi":"10.1145/2185520.2185614","volume":31,"date_published":"2012-07-04T00:00:00Z","date_created":"2018-12-11T11:55:43Z"},{"title":"Data-driven estimation of cloth simulation models","publist_id":"4929","author":[{"full_name":"Miguel, Eder","last_name":"Miguel","first_name":"Eder"},{"last_name":"Bradley","full_name":"Bradley, Derek J","first_name":"Derek"},{"first_name":"Bernhard","last_name":"Thomaszewski","full_name":"Thomaszewski, Bernhard"},{"first_name":"Bernd","id":"49876194-F248-11E8-B48F-1D18A9856A87","full_name":"Bernd Bickel","orcid":"0000-0001-6511-9385","last_name":"Bickel"},{"full_name":"Matusik, Wojciech","last_name":"Matusik","first_name":"Wojciech"},{"full_name":"Otaduy, Miguel A","last_name":"Otaduy","first_name":"Miguel"},{"full_name":"Marschner, Steve","last_name":"Marschner","first_name":"Steve"}],"extern":1,"date_updated":"2021-01-12T06:55:21Z","citation":{"mla":"Miguel, Eder, et al. Data-Driven Estimation of Cloth Simulation Models. Vol. 31, no. 2, Wiley-Blackwell, 2012, pp. 519–28, doi:10.1111/j.1467-8659.2012.03031.x.","short":"E. Miguel, D. Bradley, B. Thomaszewski, B. Bickel, W. Matusik, M. Otaduy, S. Marschner, in:, Wiley-Blackwell, 2012, pp. 519–528.","ieee":"E. Miguel et al., “Data-driven estimation of cloth simulation models,” presented at the Computer Graphics Forum, 2012, vol. 31, no. 2, pp. 519–528.","apa":"Miguel, E., Bradley, D., Thomaszewski, B., Bickel, B., Matusik, W., Otaduy, M., & Marschner, S. (2012). Data-driven estimation of cloth simulation models (Vol. 31, pp. 519–528). Presented at the Computer Graphics Forum, Wiley-Blackwell. https://doi.org/10.1111/j.1467-8659.2012.03031.x","ama":"Miguel E, Bradley D, Thomaszewski B, et al. Data-driven estimation of cloth simulation models. In: Vol 31. Wiley-Blackwell; 2012:519-528. doi:10.1111/j.1467-8659.2012.03031.x","chicago":"Miguel, Eder, Derek Bradley, Bernhard Thomaszewski, Bernd Bickel, Wojciech Matusik, Miguel Otaduy, and Steve Marschner. “Data-Driven Estimation of Cloth Simulation Models,” 31:519–28. Wiley-Blackwell, 2012. https://doi.org/10.1111/j.1467-8659.2012.03031.x.","ista":"Miguel E, Bradley D, Thomaszewski B, Bickel B, Matusik W, Otaduy M, Marschner S. 2012. Data-driven estimation of cloth simulation models. Computer Graphics Forum vol. 31, 519–528."},"status":"public","type":"conference","conference":{"name":"Computer Graphics Forum"},"_id":"2106","date_published":"2012-05-01T00:00:00Z","doi":"10.1111/j.1467-8659.2012.03031.x","issue":"2","volume":31,"date_created":"2018-12-11T11:55:45Z","page":"519 - 528","day":"01","publication_status":"published","year":"2012","month":"05","intvolume":" 31","publisher":"Wiley-Blackwell","quality_controlled":0,"acknowledgement":"This work was funded in part by the Spanish Ministry of Science and Innovation, project TIN2009-07942, and by the European Research Council, project ERC-2011-StG-280135 Animetrics.","abstract":[{"lang":"eng","text":"Progress in cloth simulation for computer animation and apparel design has led to a multitude of deformation models, each with its own way of relating geometry, deformation, and forces. As simulators improve, differences between these models become more important, but it is difficult to choose a model and a set of parameters to match a given real material simply by looking at simulation results. This paper provides measurement and fitting methods that allow nonlinear models to be fit to the observed deformation of a particular cloth sample. Unlike standard textile testing, our system measures complex 3D deformations of a sheet of cloth, not just one-dimensional force-displacement curves, so it works under a wider range of deformation conditions. The fitted models are then evaluated by comparison to measured deformations with motions very different from those used for fitting."}]},{"status":"public","type":"conference","conference":{"name":"SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques"},"_id":"2104","title":"Data-driven simulation methods in computer graphics: Cloth, tissue and faces","author":[{"first_name":"Miguel","full_name":"Otaduy, Miguel A","last_name":"Otaduy"},{"last_name":"Bickel","full_name":"Bernd Bickel","orcid":"0000-0001-6511-9385","first_name":"Bernd","id":"49876194-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Derek","full_name":"Bradley, Derek J","last_name":"Bradley"},{"full_name":"Wang, Huamin","last_name":"Wang","first_name":"Huamin"}],"publist_id":"4930","extern":1,"citation":{"mla":"Otaduy, Miguel, et al. Data-Driven Simulation Methods in Computer Graphics: Cloth, Tissue and Faces. ACM, 2012, doi:10.1145/2343483.2343495.","ama":"Otaduy M, Bickel B, Bradley D, Wang H. Data-driven simulation methods in computer graphics: Cloth, tissue and faces. In: ACM; 2012. doi:10.1145/2343483.2343495","apa":"Otaduy, M., Bickel, B., Bradley, D., & Wang, H. (2012). Data-driven simulation methods in computer graphics: Cloth, tissue and faces. Presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, ACM. https://doi.org/10.1145/2343483.2343495","short":"M. Otaduy, B. Bickel, D. Bradley, H. Wang, in:, ACM, 2012.","ieee":"M. Otaduy, B. Bickel, D. Bradley, and H. Wang, “Data-driven simulation methods in computer graphics: Cloth, tissue and faces,” presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, 2012.","chicago":"Otaduy, Miguel, Bernd Bickel, Derek Bradley, and Huamin Wang. “Data-Driven Simulation Methods in Computer Graphics: Cloth, Tissue and Faces.” ACM, 2012. https://doi.org/10.1145/2343483.2343495.","ista":"Otaduy M, Bickel B, Bradley D, Wang H. 2012. Data-driven simulation methods in computer graphics: Cloth, tissue and faces. SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques."},"date_updated":"2021-01-12T06:55:20Z","month":"01","publisher":"ACM","quality_controlled":0,"abstract":[{"lang":"eng","text":"In recent years, various methods have been introduced to exploit pre-recorded data to improve the performance and/or realism of dynamic deformations, but their differences and similarities have not been adequately analyzed or discussed. So far, the proposed methods have been explored mainly in the research context. They have not been adopted by the computer graphics industry. This course bridges the gap between research labs and industry to present a unifying theory and understanding of data-driven methods for dynamic deformations that may inspire development of novel solutions. It focuses on application of data-driven methods to three areas of computer animation: dynamic deformation of faces, soft volumetric tissue, and cloth. And it describes how to approach these challenges in a data-driven manner, classifies the various methods, and demonstrates how data-driven methods can work in other settings. "}],"doi":"10.1145/2343483.2343495","date_published":"2012-01-01T00:00:00Z","date_created":"2018-12-11T11:55:44Z","day":"01","publication_status":"published","year":"2012"},{"extern":1,"citation":{"chicago":"Skouras, Mélina, Bernhard Thomaszewski, Bernd Bickel, and Markus Groß. “Computational Design of Rubber Balloons,” 31:835–44. Wiley-Blackwell, 2012. https://doi.org/10.1111/j.1467-8659.2012.03064.x.","ista":"Skouras M, Thomaszewski B, Bickel B, Groß M. 2012. Computational design of rubber balloons. EUROGRAPHICS: European Association for Computer Graphics vol. 31, 835–844.","mla":"Skouras, Mélina, et al. Computational Design of Rubber Balloons. Vol. 31, no. 2, Wiley-Blackwell, 2012, pp. 835–44, doi:10.1111/j.1467-8659.2012.03064.x.","short":"M. Skouras, B. Thomaszewski, B. Bickel, M. Groß, in:, Wiley-Blackwell, 2012, pp. 835–844.","ieee":"M. Skouras, B. Thomaszewski, B. Bickel, and M. Groß, “Computational design of rubber balloons,” presented at the EUROGRAPHICS: European Association for Computer Graphics, 2012, vol. 31, no. 2, pp. 835–844.","apa":"Skouras, M., Thomaszewski, B., Bickel, B., & Groß, M. (2012). Computational design of rubber balloons (Vol. 31, pp. 835–844). Presented at the EUROGRAPHICS: European Association for Computer Graphics, Wiley-Blackwell. https://doi.org/10.1111/j.1467-8659.2012.03064.x","ama":"Skouras M, Thomaszewski B, Bickel B, Groß M. Computational design of rubber balloons. In: Vol 31. Wiley-Blackwell; 2012:835-844. doi:10.1111/j.1467-8659.2012.03064.x"},"date_updated":"2021-01-12T06:55:20Z","title":"Computational design of rubber balloons","publist_id":"4928","author":[{"full_name":"Skouras, Mélina","last_name":"Skouras","first_name":"Mélina"},{"first_name":"Bernhard","last_name":"Thomaszewski","full_name":"Thomaszewski, Bernhard"},{"id":"49876194-F248-11E8-B48F-1D18A9856A87","first_name":"Bernd","orcid":"0000-0001-6511-9385","full_name":"Bernd Bickel","last_name":"Bickel"},{"first_name":"Markus","full_name":"Groß, Markus S","last_name":"Groß"}],"_id":"2105","status":"public","type":"conference","conference":{"name":"EUROGRAPHICS: European Association for Computer Graphics"},"day":"01","year":"2012","publication_status":"published","date_published":"2012-05-01T00:00:00Z","doi":"10.1111/j.1467-8659.2012.03064.x","issue":"2","volume":31,"date_created":"2018-12-11T11:55:45Z","page":"835 - 844","acknowledgement":"Mélina Skouras was partially supported by the NCCR Co-Me of the Swiss National Science Foundation.","month":"05","intvolume":" 31","publisher":"Wiley-Blackwell","quality_controlled":0},{"page":"1675 - 1714","date_created":"2018-12-11T11:55:51Z","issue":"4","volume":40,"doi":"10.1214/11-AOP662","date_published":"2012-07-01T00:00:00Z","year":"2012","publication_status":"published","publication":"Annals of Probability","day":"01","main_file_link":[{"url":"http://arxiv.org/abs/1011.0966","open_access":"1"}],"oa":1,"quality_controlled":0,"publisher":"Institute of Mathematical Statistics","intvolume":" 40","month":"07","abstract":[{"text":"We consider a class of stochastic PDEs of Burgers type in spatial dimension 1, driven by space–time white noise. Even though it is well known that these equations are well posed, it turns out that if one performs a spatial discretization of the nonlinearity in the “wrong” way, then the sequence of approximate equations does converge to a limit, but this limit exhibits an additional correction term. This correction term is proportional to the local quadratic cross-variation (in space) of the gradient of the conserved quantity with the solution itself. This can be understood as a consequence of the fact that for any fixed time, the law of the solution is locally equivalent to Wiener measure, where space plays the role of time. In this sense, the correction term is similar to the usual Itô–Stratonovich correction term that arises when one considers different temporal discretizations of stochastic ODEs.","lang":"eng"}],"acknowledgement":"Supported by Rubicon Grant 680-50-0901 of the Netherlands Organisation for Scientific Research (NWO). Supported by the EPSRC Grants EP/E002269/1 and EP/D071593/1, a Wolfson Research Merit Award of the Royal Society and a Philip Leverhulme prize of the Lev","publist_id":"4908","author":[{"last_name":"Hairer","full_name":"Hairer, Martin M","first_name":"Martin"},{"last_name":"Maas","full_name":"Jan Maas","orcid":"0000-0002-0845-1338","first_name":"Jan","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87"}],"title":"A spatial version of the Itô-Stratonovich correction","date_updated":"2021-01-12T06:55:27Z","citation":{"chicago":"Hairer, Martin, and Jan Maas. “A Spatial Version of the Itô-Stratonovich Correction.” Annals of Probability. Institute of Mathematical Statistics, 2012. https://doi.org/10.1214/11-AOP662.","ista":"Hairer M, Maas J. 2012. A spatial version of the Itô-Stratonovich correction. Annals of Probability. 40(4), 1675–1714.","mla":"Hairer, Martin, and Jan Maas. “A Spatial Version of the Itô-Stratonovich Correction.” Annals of Probability, vol. 40, no. 4, Institute of Mathematical Statistics, 2012, pp. 1675–714, doi:10.1214/11-AOP662.","ama":"Hairer M, Maas J. A spatial version of the Itô-Stratonovich correction. Annals of Probability. 2012;40(4):1675-1714. doi:10.1214/11-AOP662","apa":"Hairer, M., & Maas, J. (2012). A spatial version of the Itô-Stratonovich correction. Annals of Probability. Institute of Mathematical Statistics. https://doi.org/10.1214/11-AOP662","ieee":"M. Hairer and J. Maas, “A spatial version of the Itô-Stratonovich correction,” Annals of Probability, vol. 40, no. 4. Institute of Mathematical Statistics, pp. 1675–1714, 2012.","short":"M. Hairer, J. Maas, Annals of Probability 40 (2012) 1675–1714."},"extern":1,"type":"journal_article","status":"public","_id":"2125"},{"type":"journal_article","status":"public","_id":"2127","author":[{"full_name":"Erbar, Matthias","last_name":"Erbar","first_name":"Matthias"},{"orcid":"0000-0002-0845-1338","full_name":"Jan Maas","last_name":"Maas","first_name":"Jan","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87"}],"publist_id":"4906","title":"Ricci curvature of finite Markov chains via convexity of the entropy","citation":{"apa":"Erbar, M., & Maas, J. (2012). Ricci curvature of finite Markov chains via convexity of the entropy. Archive for Rational Mechanics and Analysis. Springer. https://doi.org/10.1007/s00205-012-0554-z","ama":"Erbar M, Maas J. Ricci curvature of finite Markov chains via convexity of the entropy. Archive for Rational Mechanics and Analysis. 2012;206(3):997-1038. doi:10.1007/s00205-012-0554-z","short":"M. Erbar, J. Maas, Archive for Rational Mechanics and Analysis 206 (2012) 997–1038.","ieee":"M. Erbar and J. Maas, “Ricci curvature of finite Markov chains via convexity of the entropy,” Archive for Rational Mechanics and Analysis, vol. 206, no. 3. Springer, pp. 997–1038, 2012.","mla":"Erbar, Matthias, and Jan Maas. “Ricci Curvature of Finite Markov Chains via Convexity of the Entropy.” Archive for Rational Mechanics and Analysis, vol. 206, no. 3, Springer, 2012, pp. 997–1038, doi:10.1007/s00205-012-0554-z.","ista":"Erbar M, Maas J. 2012. Ricci curvature of finite Markov chains via convexity of the entropy. Archive for Rational Mechanics and Analysis. 206(3), 997–1038.","chicago":"Erbar, Matthias, and Jan Maas. “Ricci Curvature of Finite Markov Chains via Convexity of the Entropy.” Archive for Rational Mechanics and Analysis. Springer, 2012. https://doi.org/10.1007/s00205-012-0554-z."},"date_updated":"2021-01-12T06:55:28Z","extern":1,"publisher":"Springer","quality_controlled":0,"oa":1,"main_file_link":[{"url":"http://arxiv.org/abs/1111.2687","open_access":"1"}],"month":"12","intvolume":" 206","abstract":[{"text":"We study a new notion of Ricci curvature that applies to Markov chains on discrete spaces. This notion relies on geodesic convexity of the entropy and is analogous to the one introduced by Lott, Sturm, and Villani for geodesic measure spaces. In order to apply to the discrete setting, the role of the Wasserstein metric is taken over by a different metric, having the property that continuous time Markov chains are gradient flows of the entropy. Using this notion of Ricci curvature we prove discrete analogues of fundamental results by Bakry–Émery and Otto–Villani. Further, we show that Ricci curvature bounds are preserved under tensorisation. As a special case we obtain the sharp Ricci curvature lower bound for the discrete hypercube.","lang":"eng"}],"acknowledgement":"Jan Maas is supported by Rubicon subsidy 680-50-0901 of the Netherlands Organisation for Scientific Research (NWO).","page":"997 - 1038","date_published":"2012-12-01T00:00:00Z","issue":"3","doi":"10.1007/s00205-012-0554-z","volume":206,"date_created":"2018-12-11T11:55:52Z","year":"2012","publication_status":"published","day":"01","publication":"Archive for Rational Mechanics and Analysis"},{"_id":"2128","type":"journal_article","status":"public","citation":{"ama":"Maas J, Van Neerven J, Portal P. Whitney coverings and the tent spaces T 1,q (γ) for the Gaussian measure. Arkiv för Matematik. 2012;50(2):379-395. doi:10.1007/s11512-010-0143-z","apa":"Maas, J., Van Neerven, J., & Portal, P. (2012). Whitney coverings and the tent spaces T 1,q (γ) for the Gaussian measure. Arkiv För Matematik. Springer. https://doi.org/10.1007/s11512-010-0143-z","ieee":"J. Maas, J. Van Neerven, and P. Portal, “Whitney coverings and the tent spaces T 1,q (γ) for the Gaussian measure,” Arkiv för Matematik, vol. 50, no. 2. Springer, pp. 379–395, 2012.","short":"J. Maas, J. Van Neerven, P. Portal, Arkiv För Matematik 50 (2012) 379–395.","mla":"Maas, Jan, et al. “Whitney Coverings and the Tent Spaces T 1,q (γ) for the Gaussian Measure.” Arkiv För Matematik, vol. 50, no. 2, Springer, 2012, pp. 379–95, doi:10.1007/s11512-010-0143-z.","ista":"Maas J, Van Neerven J, Portal P. 2012. Whitney coverings and the tent spaces T 1,q (γ) for the Gaussian measure. Arkiv för Matematik. 50(2), 379–395.","chicago":"Maas, Jan, Jan Van Neerven, and Pierre Portal. “Whitney Coverings and the Tent Spaces T 1,q (γ) for the Gaussian Measure.” Arkiv För Matematik. Springer, 2012. https://doi.org/10.1007/s11512-010-0143-z."},"date_updated":"2021-01-12T06:55:28Z","extern":1,"author":[{"last_name":"Maas","orcid":"0000-0002-0845-1338","full_name":"Jan Maas","first_name":"Jan","id":"4C5696CE-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Jan","last_name":"Van Neerven","full_name":"van Neerven, Jan M"},{"first_name":"Pierre","last_name":"Portal","full_name":"Portal, Pierre"}],"publist_id":"4907","title":"Whitney coverings and the tent spaces T 1,q (γ) for the Gaussian measure","abstract":[{"lang":"eng","text":"We introduce a technique for handling Whitney decompositions in Gaussian harmonic analysis and apply it to the study of Gaussian analogues of the classical tent spaces T 1,q of Coifman–Meyer–Stein."}],"acknowledgement":"J. Maas was supported by Rubicon subsidy 680-50-0901 of the Netherlands Organisation for Scientific Research (NWO). J. van Neerven was supported by VICI subsidy 639.033.604 of the Netherlands Organisation for Scientific Research (NWO).","main_file_link":[{"url":"http://arxiv.org/abs/1002.4911","open_access":"1"}],"oa":1,"publisher":"Springer","quality_controlled":0,"intvolume":" 50","month":"10","publication_status":"published","year":"2012","publication":"Arkiv för Matematik","day":"01","page":"379 - 395","date_created":"2018-12-11T11:55:52Z","issue":"2","volume":50,"date_published":"2012-10-01T00:00:00Z","doi":"10.1007/s11512-010-0143-z"},{"extern":1,"citation":{"mla":"Lemeshko, Mikhail, and Břetislav Friedrich. “Interaction between Polar Molecules Subject to a Far-off-Resonant Optical Field: Entangled Dipoles up- or down-Holding Each Other.” Molecular Physics, vol. 110, no. 15–16, Taylor & Francis, 2012, pp. 1873–81, doi:10.1080/00268976.2012.689868.","ama":"Lemeshko M, Friedrich B. Interaction between polar molecules subject to a far-off-resonant optical field: Entangled dipoles up- or down-holding each other. Molecular Physics. 2012;110(15-16):1873-1881. doi:10.1080/00268976.2012.689868","apa":"Lemeshko, M., & Friedrich, B. (2012). Interaction between polar molecules subject to a far-off-resonant optical field: Entangled dipoles up- or down-holding each other. Molecular Physics. Taylor & Francis. https://doi.org/10.1080/00268976.2012.689868","short":"M. Lemeshko, B. Friedrich, Molecular Physics 110 (2012) 1873–1881.","ieee":"M. Lemeshko and B. Friedrich, “Interaction between polar molecules subject to a far-off-resonant optical field: Entangled dipoles up- or down-holding each other,” Molecular Physics, vol. 110, no. 15–16. Taylor & Francis, pp. 1873–1881, 2012.","chicago":"Lemeshko, Mikhail, and Břetislav Friedrich. “Interaction between Polar Molecules Subject to a Far-off-Resonant Optical Field: Entangled Dipoles up- or down-Holding Each Other.” Molecular Physics. Taylor & Francis, 2012. https://doi.org/10.1080/00268976.2012.689868.","ista":"Lemeshko M, Friedrich B. 2012. Interaction between polar molecules subject to a far-off-resonant optical field: Entangled dipoles up- or down-holding each other. Molecular Physics. 110(15–16), 1873–1881."},"date_updated":"2021-01-12T06:55:58Z","title":"Interaction between polar molecules subject to a far-off-resonant optical field: Entangled dipoles up- or down-holding each other","publist_id":"4770","author":[{"orcid":"0000-0002-6990-7802","full_name":"Mikhail Lemeshko","last_name":"Lemeshko","first_name":"Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Břetislav","last_name":"Friedrich","full_name":"Friedrich, Břetislav"}],"_id":"2203","status":"public","type":"journal_article","day":"01","publication":"Molecular Physics","publication_status":"published","year":"2012","volume":110,"date_published":"2012-01-01T00:00:00Z","issue":"15-16","doi":"10.1080/00268976.2012.689868","date_created":"2018-12-11T11:56:18Z","page":"1873 - 1881","abstract":[{"text":"We show that the electric dipole-dipole interaction between a pair of polar molecules undergoes an all-out transformation when superimposed by a far-off-resonant optical field. The combined interaction potential becomes tunable by variation of wavelength, polarisation and intensity of the optical field and its dependence on the intermolecular separation exhibits a crossover from an inverse-power to an oscillating behaviour. The ability thereby offered to control molecular interactions opens up avenues toward the creation and manipulation of novel phases of ultracold polar gases among whose characteristics is a long-range entanglement of the dipoles' mutual orientation. We devised an accurate analytic model of such optical-field-dressed dipole-dipole interaction potentials, which enables a straightforward access to the optical-field parameters required for the design of intermolecular interactions in the laboratory.","lang":"eng"}],"month":"01","intvolume":" 110","publisher":"Taylor & Francis","quality_controlled":0,"main_file_link":[{"url":"http://arxiv.org/abs/1108.4583","open_access":"1"}],"oa":1},{"_id":"2201","status":"public","type":"journal_article","extern":"1","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","date_updated":"2021-11-16T08:01:02Z","citation":{"chicago":"Lemeshko, Mikhail, Roman Krems, and Hendrik Weimer. “Nonadiabatic Preparation of Spin Crystals with Ultracold Polar Molecules.” Physical Review Letters. American Physical Society, 2012. https://doi.org/10.1103/PhysRevLett.109.035301.","ista":"Lemeshko M, Krems R, Weimer H. 2012. Nonadiabatic preparation of spin crystals with ultracold polar molecules. Physical Review Letters. 109(3).","mla":"Lemeshko, Mikhail, et al. “Nonadiabatic Preparation of Spin Crystals with Ultracold Polar Molecules.” Physical Review Letters, vol. 109, no. 3, American Physical Society, 2012, doi:10.1103/PhysRevLett.109.035301.","apa":"Lemeshko, M., Krems, R., & Weimer, H. (2012). Nonadiabatic preparation of spin crystals with ultracold polar molecules. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.109.035301","ama":"Lemeshko M, Krems R, Weimer H. Nonadiabatic preparation of spin crystals with ultracold polar molecules. Physical Review Letters. 2012;109(3). doi:10.1103/PhysRevLett.109.035301","short":"M. Lemeshko, R. Krems, H. Weimer, Physical Review Letters 109 (2012).","ieee":"M. Lemeshko, R. Krems, and H. Weimer, “Nonadiabatic preparation of spin crystals with ultracold polar molecules,” Physical Review Letters, vol. 109, no. 3. American Physical Society, 2012."},"title":"Nonadiabatic preparation of spin crystals with ultracold polar molecules","publist_id":"4772","author":[{"last_name":"Lemeshko","orcid":"0000-0002-6990-7802","full_name":"Lemeshko, Mikhail","first_name":"Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Roman","full_name":"Krems, Roman","last_name":"Krems"},{"full_name":"Weimer, Hendrik","last_name":"Weimer","first_name":"Hendrik"}],"article_processing_charge":"No","oa_version":"None","abstract":[{"text":"We study the growth dynamics of ordered structures of strongly interacting polar molecules in optical lattices. Using a dipole blockade of microwave excitations, we map the system onto an interacting spin-1/2 model possessing ground states with crystalline order, and describe a way to prepare these states by nonadiabatically driving the transitions between molecular rotational levels. The proposed technique bypasses the need to cross a phase transition and allows for the creation of ordered domains of considerably larger size compared to approaches relying on adiabatic preparation.","lang":"eng"}],"month":"07","intvolume":" 109","publisher":"American Physical Society","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1203.0010"}],"oa":1,"day":"16","publication":"Physical Review Letters","language":[{"iso":"eng"}],"year":"2012","publication_status":"published","date_published":"2012-07-16T00:00:00Z","volume":109,"issue":"3","related_material":{"link":[{"relation":"erratum","url":"https://doi.org/10.1103/PhysRevLett.109.049901"}]},"doi":"10.1103/PhysRevLett.109.035301","date_created":"2018-12-11T11:56:17Z"},{"title":"Sensitive imaging of electromagnetic fields with paramagnetic polar molecules","publist_id":"4773","author":[{"last_name":"Alyabyshev","full_name":"Alyabyshev, Sergey V","first_name":"Sergey"},{"last_name":"Lemeshko","full_name":"Mikhail Lemeshko","orcid":"0000-0002-6990-7802","first_name":"Mikhail","id":"37CB05FA-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Krems, Roman V","last_name":"Krems","first_name":"Roman"}],"extern":1,"citation":{"short":"S. Alyabyshev, M. Lemeshko, R. Krems, Physical Review A - Atomic, Molecular, and Optical Physics 86 (2012).","ieee":"S. Alyabyshev, M. Lemeshko, and R. Krems, “Sensitive imaging of electromagnetic fields with paramagnetic polar molecules,” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 86, no. 1. American Physical Society, 2012.","ama":"Alyabyshev S, Lemeshko M, Krems R. Sensitive imaging of electromagnetic fields with paramagnetic polar molecules. Physical Review A - Atomic, Molecular, and Optical Physics. 2012;86(1). doi:10.1103/PhysRevA.86.013409","apa":"Alyabyshev, S., Lemeshko, M., & Krems, R. (2012). Sensitive imaging of electromagnetic fields with paramagnetic polar molecules. Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society. https://doi.org/10.1103/PhysRevA.86.013409","mla":"Alyabyshev, Sergey, et al. “Sensitive Imaging of Electromagnetic Fields with Paramagnetic Polar Molecules.” Physical Review A - Atomic, Molecular, and Optical Physics, vol. 86, no. 1, American Physical Society, 2012, doi:10.1103/PhysRevA.86.013409.","ista":"Alyabyshev S, Lemeshko M, Krems R. 2012. Sensitive imaging of electromagnetic fields with paramagnetic polar molecules. Physical Review A - Atomic, Molecular, and Optical Physics. 86(1).","chicago":"Alyabyshev, Sergey, Mikhail Lemeshko, and Roman Krems. “Sensitive Imaging of Electromagnetic Fields with Paramagnetic Polar Molecules.” Physical Review A - Atomic, Molecular, and Optical Physics. American Physical Society, 2012. https://doi.org/10.1103/PhysRevA.86.013409."},"date_updated":"2021-01-12T06:55:57Z","status":"public","type":"journal_article","_id":"2202","date_published":"2012-07-13T00:00:00Z","volume":86,"doi":"10.1103/PhysRevA.86.013409","issue":"1","date_created":"2018-12-11T11:56:18Z","day":"13","publication":"Physical Review A - Atomic, Molecular, and Optical Physics","year":"2012","publication_status":"published","month":"07","intvolume":" 86","quality_controlled":0,"publisher":"American Physical Society","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1202.1857"}],"oa":1,"abstract":[{"text":"We propose a method for sensitive parallel detection of low-frequency electromagnetic fields based on the fine structure interactions in paramagnetic polar molecules. Compared to the recently implemented scheme employing ultracold 87Rb atoms by Böhi, the technique based on molecules offers a 100-fold higher sensitivity, the possibility to measure both the electric and magnetic field components, and a probe of a wide range of frequencies from the dc limit to the THz regime.","lang":"eng"}]},{"ddc":["576"],"date_updated":"2021-01-12T06:56:23Z","file_date_updated":"2020-07-14T12:45:35Z","department":[{"_id":"SiHi"}],"_id":"2263","status":"public","pubrep_id":"387","type":"journal_article","tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","image":"/images/cc_by_nc_sa.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","short":"CC BY-NC-SA (4.0)"},"file":[{"checksum":"605a1800b81227848c361fd6ba7d22ba","file_id":"4990","access_level":"open_access","relation":"main_file","content_type":"application/pdf","date_created":"2018-12-12T10:13:09Z","file_name":"IST-2015-387-v1+1_1200.full.pdf","creator":"system","date_updated":"2020-07-14T12:45:35Z","file_size":726695}],"language":[{"iso":"eng"}],"publication_status":"published","volume":1,"issue":"12","license":"https://creativecommons.org/licenses/by-nc-sa/4.0/","oa_version":"Published Version","abstract":[{"text":"Nestin-cre transgenic mice have been widely used to direct recombination to neural stem cells (NSCs) and intermediate neural progenitor cells (NPCs). Here we report that a readily utilized, and the only commercially available, Nestin-cre line is insufficient for directing recombination in early embryonic NSCs and NPCs. Analysis of recombination efficiency in multiple cre-dependent reporters and a genetic mosaic line revealed consistent temporal and spatial patterns of recombination in NSCs and NPCs. For comparison we utilized a knock-in Emx1cre line and found robust recombination in NSCs and NPCs in ventricular and subventricular zones of the cerebral cortices as early as embryonic day 12.5. In addition we found that the rate of Nestin-cre driven recombination only reaches sufficiently high levels in NSCs and NPCs during late embryonic and early postnatal periods. These findings are important when commercially available cre lines are considered for directing recombination to embryonic NSCs and NPCs.","lang":"eng"}],"month":"12","intvolume":" 1","scopus_import":1,"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","citation":{"mla":"Liang, Huixuan, et al. “A Nestin-Cre Transgenic Mouse Is Insufficient for Recombination in Early Embryonic Neural Progenitors.” Biology Open, vol. 1, no. 12, The Company of Biologists, 2012, pp. 1200–03, doi:10.1242/bio.20122287.","short":"H. Liang, S. Hippenmeyer, H. Ghashghaei, Biology Open 1 (2012) 1200–1203.","ieee":"H. Liang, S. Hippenmeyer, and H. Ghashghaei, “A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors,” Biology open, vol. 1, no. 12. The Company of Biologists, pp. 1200–1203, 2012.","ama":"Liang H, Hippenmeyer S, Ghashghaei H. A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors. Biology open. 2012;1(12):1200-1203. doi:10.1242/bio.20122287","apa":"Liang, H., Hippenmeyer, S., & Ghashghaei, H. (2012). A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors. Biology Open. The Company of Biologists. https://doi.org/10.1242/bio.20122287","chicago":"Liang, Huixuan, Simon Hippenmeyer, and H. Ghashghaei. “A Nestin-Cre Transgenic Mouse Is Insufficient for Recombination in Early Embryonic Neural Progenitors.” Biology Open. The Company of Biologists, 2012. https://doi.org/10.1242/bio.20122287.","ista":"Liang H, Hippenmeyer S, Ghashghaei H. 2012. A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors. Biology open. 1(12), 1200–1203."},"title":"A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors","publist_id":"4682","author":[{"first_name":"Huixuan","last_name":"Liang","full_name":"Liang, Huixuan"},{"full_name":"Hippenmeyer, Simon","orcid":"0000-0003-2279-1061","last_name":"Hippenmeyer","id":"37B36620-F248-11E8-B48F-1D18A9856A87","first_name":"Simon"},{"first_name":"H.","last_name":"Ghashghaei","full_name":"Ghashghaei, H."}],"day":"15","publication":"Biology open","has_accepted_license":"1","year":"2012","doi":"10.1242/bio.20122287","date_published":"2012-12-15T00:00:00Z","date_created":"2018-12-11T11:56:38Z","page":"1200 - 1203","quality_controlled":"1","publisher":"The Company of Biologists","oa":1},{"_id":"2267","pubrep_id":"572","status":"public","conference":{"end_date":"2012-05-14","location":"Calgari, Italy","start_date":"2012-05-13","name":"EGPGV: Eurographics Symposium on Parallel Graphics and Visualization"},"type":"conference","ddc":["000"],"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","extern":"1","date_updated":"2021-01-12T06:56:24Z","citation":{"chicago":"Preiner, Reinhold, Stefan Jeschke, and Michael Wimmer. “Auto Splats: Dynamic Point Cloud Visualization on the GPU,” 139–48. Eurographics Association, 2012. https://doi.org/10.2312/EGPGV/EGPGV12/139-148.","ista":"Preiner R, Jeschke S, Wimmer M. 2012. Auto splats: Dynamic point cloud visualization on the GPU. EGPGV: Eurographics Symposium on Parallel Graphics and Visualization, 139–148.","mla":"Preiner, Reinhold, et al. Auto Splats: Dynamic Point Cloud Visualization on the GPU. Eurographics Association, 2012, pp. 139–48, doi:10.2312/EGPGV/EGPGV12/139-148.","short":"R. Preiner, S. Jeschke, M. Wimmer, in:, Eurographics Association, 2012, pp. 139–148.","ieee":"R. Preiner, S. Jeschke, and M. Wimmer, “Auto splats: Dynamic point cloud visualization on the GPU,” presented at the EGPGV: Eurographics Symposium on Parallel Graphics and Visualization, Calgari, Italy, 2012, pp. 139–148.","ama":"Preiner R, Jeschke S, Wimmer M. Auto splats: Dynamic point cloud visualization on the GPU. In: Eurographics Association; 2012:139-148. doi:10.2312/EGPGV/EGPGV12/139-148","apa":"Preiner, R., Jeschke, S., & Wimmer, M. (2012). Auto splats: Dynamic point cloud visualization on the GPU (pp. 139–148). Presented at the EGPGV: Eurographics Symposium on Parallel Graphics and Visualization, Calgari, Italy: Eurographics Association. https://doi.org/10.2312/EGPGV/EGPGV12/139-148"},"title":"Auto splats: Dynamic point cloud visualization on the GPU","file_date_updated":"2020-07-14T12:45:35Z","publist_id":"4677","author":[{"first_name":"Reinhold","last_name":"Preiner","full_name":"Preiner, Reinhold"},{"last_name":"Jeschke","full_name":"Jeschke, Stefan","first_name":"Stefan","id":"44D6411A-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Michael","full_name":"Wimmer, Michael","last_name":"Wimmer"}],"oa_version":"Submitted Version","abstract":[{"text":"Capturing real-world objects with laser-scanning technology has become an everyday task. Recently, the acquisition of dynamic scenes at interactive frame rates has become feasible. A high-quality visualization of the resulting point cloud stream would require a per-frame reconstruction of object surfaces. Unfortunately, reconstruction computations are still too time-consuming to be applied interactively. In this paper we present a local surface reconstruction and visualization technique that provides interactive feedback for reasonably sized point clouds, while achieving high image quality. Our method is performed entirely on the GPU and in screen pace, exploiting the efficiency of the common rasterization pipeline. The approach is very general, as no assumption is made about point connectivity or sampling density. This naturally allows combining the outputs of multiple scanners in a single visualization, which is useful for many virtual and augmented reality applications. ","lang":"eng"}],"month":"05","oa":1,"quality_controlled":"1","publisher":"Eurographics Association","language":[{"iso":"eng"}],"file":[{"access_level":"open_access","relation":"main_file","content_type":"application/pdf","file_id":"4866","checksum":"5495bb6ee8662cd401b34afb04dfb40f","creator":"system","date_updated":"2020-07-14T12:45:35Z","file_size":14903860,"date_created":"2018-12-12T10:11:13Z","file_name":"IST-2016-572-v1+1_preiner_2012_AS-draft.pdf"}],"day":"13","publication_status":"published","year":"2012","has_accepted_license":"1","date_created":"2018-12-11T11:56:40Z","doi":"10.2312/EGPGV/EGPGV12/139-148","date_published":"2012-05-13T00:00:00Z","page":"139 - 148"},{"citation":{"ista":"Tasic B, Miyamichi K, Hippenmeyer S, Dani V, Zeng H, Joo W, Zong H, Chen Tsai Y, Luo L. 2012. Extensions of MADM (Mosaic Analysis with Double Markers) in Mice . PLoS One. 7(3).","chicago":"Tasic, Bosiljka, Kazunari Miyamichi, Simon Hippenmeyer, Vardhan Dani, H. Zeng, William Joo, Hui Zong, Yanru Chen Tsai, and Liqun Luo. “Extensions of MADM (Mosaic Analysis with Double Markers) in Mice .” PLoS One. Public Library of Science, 2012. https://doi.org/10.1371/journal.pone.0033332.","ama":"Tasic B, Miyamichi K, Hippenmeyer S, et al. Extensions of MADM (Mosaic Analysis with Double Markers) in Mice . PLoS One. 2012;7(3). doi:10.1371/journal.pone.0033332","apa":"Tasic, B., Miyamichi, K., Hippenmeyer, S., Dani, V., Zeng, H., Joo, W., … Luo, L. (2012). Extensions of MADM (Mosaic Analysis with Double Markers) in Mice . PLoS One. Public Library of Science. https://doi.org/10.1371/journal.pone.0033332","short":"B. Tasic, K. Miyamichi, S. Hippenmeyer, V. Dani, H. Zeng, W. Joo, H. Zong, Y. Chen Tsai, L. Luo, PLoS One 7 (2012).","ieee":"B. Tasic et al., “Extensions of MADM (Mosaic Analysis with Double Markers) in Mice ,” PLoS One, vol. 7, no. 3. Public Library of Science, 2012.","mla":"Tasic, Bosiljka, et al. “Extensions of MADM (Mosaic Analysis with Double Markers) in Mice .” PLoS One, vol. 7, no. 3, Public Library of Science, 2012, doi:10.1371/journal.pone.0033332."},"date_updated":"2021-01-12T06:56:22Z","extern":1,"author":[{"first_name":"Bosiljka","full_name":"Tasic, Bosiljka","last_name":"Tasic"},{"last_name":"Miyamichi","full_name":"Miyamichi, Kazunari","first_name":"Kazunari"},{"last_name":"Hippenmeyer","full_name":"Simon Hippenmeyer","orcid":"0000-0003-2279-1061","id":"37B36620-F248-11E8-B48F-1D18A9856A87","first_name":"Simon"},{"first_name":"Vardhan","full_name":"Dani, Vardhan S.","last_name":"Dani"},{"first_name":"H.","full_name":"Zeng, H.","last_name":"Zeng"},{"first_name":"William","full_name":"Joo, William","last_name":"Joo"},{"first_name":"Hui","last_name":"Zong","full_name":"Zong, Hui"},{"first_name":"Yanru","full_name":"Chen-Tsai, Yanru","last_name":"Chen Tsai"},{"first_name":"Liqun","full_name":"Luo, Liqun","last_name":"Luo"}],"publist_id":"4683","title":"Extensions of MADM (Mosaic Analysis with Double Markers) in Mice ","_id":"2262","type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"status":"public","year":"2012","publication_status":"published","day":"27","publication":"PLoS One","date_published":"2012-03-27T00:00:00Z","volume":7,"issue":"3","doi":"10.1371/journal.pone.0033332","date_created":"2018-12-11T11:56:38Z","abstract":[{"text":"Mosaic Analysis with Double Markers (MADM) is a method for generating genetically mosaic mice, in which sibling mutant and wild-type cells are labeled with different fluorescent markers. It is a powerful tool that enables analysis of gene function at the single cell level in vivo. It requires transgenic cassettes to be located between the centromere and the mutation in the gene of interest on the same chromosome. Here we compare procedures for introduction of MADM cassettes into new loci in the mouse genome, and describe new approaches for expanding the utility of MADM. We show that: 1) Targeted homologous recombination outperforms random transgenesis in generation of reliably expressed MADM cassettes, 2) MADM cassettes in new genomic loci need to be validated for biallelic and ubiquitous expression, 3) Recombination between MADM cassettes on different chromosomes can be used to study reciprocal chromosomal deletions/duplications, and 4) MADM can be modified to permit transgene expression by combining it with a binary expression system. The advances described in this study expand current, and enable new and more versatile applications of MADM.","lang":"eng"}],"acknowledgement":"This work was supported by a National Institutes of Health grant to LL (R01-NS050835). BT was a Damon Runyon Fellow and was supported by the Damon Runyon Cancer Research Foundation Grant DRG-1819-04. KM was supported by the Japan Society for the Promotion of Science program for Research Abroad and Human Frontier Science Program Organization (LT00300/2007-L). SH was supported by postdoctoral fellowships from the European Molecular Biology Organization (ALTF 851-2005), Human Frontier Science Program Organization (LT00805/2006-L), and Swiss National Science Foundation (PA00P3_124160 and PA00P3_136482). HZ is a Pew Scholar in Biomedical Sciences, supported by The Pew Charitable Trusts. LL is an investigator of the Howard Hughes Medical Institute. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.","quality_controlled":0,"publisher":"Public Library of Science","month":"03","intvolume":" 7"},{"_id":"2268","status":"public","conference":{"name":"EUROGRAPHICS: European Association for Computer Graphics"},"type":"conference","extern":1,"citation":{"chicago":"Auzinger, Thomas, Michael Guthe, and Stefan Jeschke. “Analytic Anti-Aliasing of Linear Functions on Polytopes,” 31:335–44. Wiley-Blackwell, 2012. http://dx.doi.org/10.1111/j.1467-8659.2012.03012.x.","ista":"Auzinger T, Guthe M, Jeschke S. 2012. Analytic anti-aliasing of linear functions on polytopes. EUROGRAPHICS: European Association for Computer Graphics, Computer Graphics Forum, vol. 31, 335–344.","mla":"Auzinger, Thomas, et al. Analytic Anti-Aliasing of Linear Functions on Polytopes. Vol. 31, no. 121, Wiley-Blackwell, 2012, pp. 335–44, doi:http://dx.doi.org/10.1111/j.1467-8659.2012.03012.x.","ieee":"T. Auzinger, M. Guthe, and S. Jeschke, “Analytic anti-aliasing of linear functions on polytopes,” presented at the EUROGRAPHICS: European Association for Computer Graphics, 2012, vol. 31, no. 121, pp. 335–344.","short":"T. Auzinger, M. Guthe, S. Jeschke, in:, Wiley-Blackwell, 2012, pp. 335–344.","ama":"Auzinger T, Guthe M, Jeschke S. Analytic anti-aliasing of linear functions on polytopes. In: Vol 31. Wiley-Blackwell; 2012:335-344. doi:http://dx.doi.org/10.1111/j.1467-8659.2012.03012.x","apa":"Auzinger, T., Guthe, M., & Jeschke, S. (2012). Analytic anti-aliasing of linear functions on polytopes (Vol. 31, pp. 335–344). Presented at the EUROGRAPHICS: European Association for Computer Graphics, Wiley-Blackwell. http://dx.doi.org/10.1111/j.1467-8659.2012.03012.x"},"date_updated":"2021-01-12T06:56:24Z","title":"Analytic anti-aliasing of linear functions on polytopes","publist_id":"4676","author":[{"first_name":"Thomas","id":"4718F954-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1546-3265","full_name":"Thomas Auzinger","last_name":"Auzinger"},{"first_name":"Michael","full_name":"Guthe, Michael","last_name":"Guthe"},{"full_name":"Stefan Jeschke","last_name":"Jeschke","id":"44D6411A-F248-11E8-B48F-1D18A9856A87","first_name":"Stefan"}],"acknowledgement":"Funding was provided by the FWF grant P20768-N13.\nWe want to thank the reviewers for their insightful and helpful remarks, Hang Si for making available TetGen and Stefan Bruckner for VolumeShop.","abstract":[{"lang":"eng","text":"This paper presents an analytic formulation for anti-aliased sampling of 2D polygons and 3D polyhedra. Our framework allows the exact evaluation of the convolution integral with a linear function defined on the polytopes. The filter is a spherically symmetric polynomial of any order, supporting approximations to refined variants such as the Mitchell-Netravali filter family. This enables high-quality rasterization of triangles and tetrahedra with linearly interpolated vertex values to regular and non-regular grids. A closed form solution of the convolution is presented and an efficient implementation on the GPU using DirectX and CUDA C is described. "}],"intvolume":" 31","month":"05","oa":1,"main_file_link":[{"url":"https://www.cg.tuwien.ac.at/research/publications/2012/Auzinger_2012_AAA/","open_access":"1"}],"quality_controlled":0,"alternative_title":["Computer Graphics Forum"],"publisher":"Wiley-Blackwell","day":"13","year":"2012","publication_status":"published","date_created":"2018-12-11T11:56:40Z","doi":"http://dx.doi.org/10.1111/j.1467-8659.2012.03012.x","volume":31,"issue":121,"date_published":"2012-05-13T00:00:00Z","page":"335 - 344"},{"publisher":"IEEE","quality_controlled":"1","date_created":"2018-12-11T11:56:52Z","doi":"10.1109/TCBB.2012.91","date_published":"2012-07-03T00:00:00Z","page":"310 - 322","publication":"IEEE ACM Transactions on Computational Biology and Bioinformatics","day":"03","year":"2012","project":[{"name":"Quantitative Reactive Modeling","grant_number":"267989","_id":"25EE3708-B435-11E9-9278-68D0E5697425","call_identifier":"FP7"}],"title":"The propagation approach for computing biochemical reaction networks","external_id":{"pmid":["22778152"]},"author":[{"full_name":"Henzinger, Thomas A","orcid":"0000−0002−2985−7724","last_name":"Henzinger","id":"40876CD8-F248-11E8-B48F-1D18A9856A87","first_name":"Thomas A"},{"last_name":"Mateescu","full_name":"Mateescu, Maria","id":"3B43276C-F248-11E8-B48F-1D18A9856A87","first_name":"Maria"}],"publist_id":"4625","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"mla":"Henzinger, Thomas A., and Maria Mateescu. “The Propagation Approach for Computing Biochemical Reaction Networks.” IEEE ACM Transactions on Computational Biology and Bioinformatics, vol. 10, no. 2, IEEE, 2012, pp. 310–22, doi:10.1109/TCBB.2012.91.","apa":"Henzinger, T. A., & Mateescu, M. (2012). The propagation approach for computing biochemical reaction networks. IEEE ACM Transactions on Computational Biology and Bioinformatics. IEEE. https://doi.org/10.1109/TCBB.2012.91","ama":"Henzinger TA, Mateescu M. The propagation approach for computing biochemical reaction networks. IEEE ACM Transactions on Computational Biology and Bioinformatics. 2012;10(2):310-322. doi:10.1109/TCBB.2012.91","ieee":"T. A. Henzinger and M. Mateescu, “The propagation approach for computing biochemical reaction networks,” IEEE ACM Transactions on Computational Biology and Bioinformatics, vol. 10, no. 2. IEEE, pp. 310–322, 2012.","short":"T.A. Henzinger, M. Mateescu, IEEE ACM Transactions on Computational Biology and Bioinformatics 10 (2012) 310–322.","chicago":"Henzinger, Thomas A, and Maria Mateescu. “The Propagation Approach for Computing Biochemical Reaction Networks.” IEEE ACM Transactions on Computational Biology and Bioinformatics. IEEE, 2012. https://doi.org/10.1109/TCBB.2012.91.","ista":"Henzinger TA, Mateescu M. 2012. The propagation approach for computing biochemical reaction networks. IEEE ACM Transactions on Computational Biology and Bioinformatics. 10(2), 310–322."},"intvolume":" 10","month":"07","scopus_import":1,"oa_version":"None","pmid":1,"abstract":[{"lang":"eng","text":"We introduce propagation models (PMs), a formalism able to express several kinds of equations that describe the behavior of biochemical reaction networks. Furthermore, we introduce the propagation abstract data type (PADT), which separates concerns regarding different numerical algorithms for the transient analysis of biochemical reaction networks from concerns regarding their implementation, thus allowing for portable and efficient solutions. The state of a propagation abstract data type is given by a vector that assigns mass values to a set of nodes, and its (next) operator propagates mass values through this set of nodes. We propose an approximate implementation of the (next) operator, based on threshold abstraction, which propagates only "significant" mass values and thus achieves a compromise between efficiency and accuracy. Finally, we give three use cases for propagation models: the chemical master equation (CME), the reaction rate equation (RRE), and a hybrid method that combines these two equations. These three applications use propagation models in order to propagate probabilities and/or expected values and variances of the model's variables."}],"ec_funded":1,"volume":10,"issue":"2","language":[{"iso":"eng"}],"publication_status":"published","status":"public","type":"journal_article","_id":"2302","department":[{"_id":"ToHe"},{"_id":"CaGu"}],"date_updated":"2021-01-12T06:56:38Z"},{"status":"public","type":"journal_article","_id":"2313","title":"Exome sequencing can improve diagnosis and alter patient management","publist_id":"4614","author":[{"last_name":"Dixon Salazar","full_name":"Dixon-Salazar, Tracy J","first_name":"Tracy"},{"first_name":"Jennifer","last_name":"Silhavy","full_name":"Silhavy, Jennifer L"},{"full_name":"Udpa, Nitin","last_name":"Udpa","first_name":"Nitin"},{"full_name":"Schroth, Jana","last_name":"Schroth","first_name":"Jana"},{"last_name":"Bielas","full_name":"Bielas, Stephanie L","first_name":"Stephanie"},{"first_name":"Ashleigh","full_name":"Schaffer, Ashleigh E","last_name":"Schaffer"},{"last_name":"Olvera","full_name":"Olvera, Jesus","first_name":"Jesus"},{"first_name":"Vineet","full_name":"Bafna, Vineet K","last_name":"Bafna"},{"full_name":"Zaki, Maha S","last_name":"Zaki","first_name":"Maha"},{"full_name":"Abdel-Salam, Ghada M","last_name":"Abdel Salam","first_name":"Ghada"},{"first_name":"Lobna","last_name":"Mansour","full_name":"Mansour, Lobna A"},{"last_name":"Selim","full_name":"Selim, Laila A","first_name":"Laila"},{"first_name":"Sawsan","last_name":"Abdel Hadi","full_name":"Abdel-Hadi, Sawsan S"},{"last_name":"Marzouki","full_name":"Marzouki, Naima","first_name":"Naima"},{"full_name":"Ben-Omran, Tawfeg I","last_name":"Ben Omran","first_name":"Tawfeg"},{"full_name":"Al-Saana, Nouriya A","last_name":"Al Saana","first_name":"Nouriya"},{"full_name":"Sönmez, Fatma M","last_name":"Sönmez","first_name":"Fatma"},{"full_name":"Celep, Figen","last_name":"Celep","first_name":"Figen"},{"first_name":"Matloob","full_name":"Azam, Matloob","last_name":"Azam"},{"first_name":"Kiley","last_name":"Hill","full_name":"Hill, Kiley J"},{"last_name":"Collazo","full_name":"Collazo, Adrienne","first_name":"Adrienne"},{"first_name":"Ali","last_name":"Fenstermaker","full_name":"Fenstermaker, Ali G"},{"orcid":"0000-0002-7673-7178","full_name":"Gaia Novarino","last_name":"Novarino","id":"3E57A680-F248-11E8-B48F-1D18A9856A87","first_name":"Gaia"},{"full_name":"Akizu, Naiara","last_name":"Akizu","first_name":"Naiara"},{"first_name":"Kiran","last_name":"Garimella","full_name":"Garimella, Kiran V"},{"first_name":"Carrie","full_name":"Sougnez, Carrie L","last_name":"Sougnez"},{"first_name":"Carsten","last_name":"Russ","full_name":"Russ, Carsten"},{"last_name":"Gabriel","full_name":"Gabriel, Stacey B","first_name":"Stacey"},{"full_name":"Gleeson, Joseph G","last_name":"Gleeson","first_name":"Joseph"}],"extern":1,"date_updated":"2021-01-12T06:56:43Z","citation":{"mla":"Dixon Salazar, Tracy, et al. “Exome Sequencing Can Improve Diagnosis and Alter Patient Management.” Science Translational Medicine, vol. 4, no. 138, American Association for the Advancement of Science, 2012, doi:10.1126/scitranslmed.3003544.","ieee":"T. Dixon Salazar et al., “Exome sequencing can improve diagnosis and alter patient management,” Science Translational Medicine, vol. 4, no. 138. American Association for the Advancement of Science, 2012.","short":"T. Dixon Salazar, J. Silhavy, N. Udpa, J. Schroth, S. Bielas, A. Schaffer, J. Olvera, V. Bafna, M. Zaki, G. Abdel Salam, L. Mansour, L. Selim, S. Abdel Hadi, N. Marzouki, T. Ben Omran, N. Al Saana, F. Sönmez, F. Celep, M. Azam, K. Hill, A. Collazo, A. Fenstermaker, G. Novarino, N. Akizu, K. Garimella, C. Sougnez, C. Russ, S. Gabriel, J. Gleeson, Science Translational Medicine 4 (2012).","ama":"Dixon Salazar T, Silhavy J, Udpa N, et al. Exome sequencing can improve diagnosis and alter patient management. Science Translational Medicine. 2012;4(138). doi:10.1126/scitranslmed.3003544","apa":"Dixon Salazar, T., Silhavy, J., Udpa, N., Schroth, J., Bielas, S., Schaffer, A., … Gleeson, J. (2012). Exome sequencing can improve diagnosis and alter patient management. Science Translational Medicine. American Association for the Advancement of Science. https://doi.org/10.1126/scitranslmed.3003544","chicago":"Dixon Salazar, Tracy, Jennifer Silhavy, Nitin Udpa, Jana Schroth, Stephanie Bielas, Ashleigh Schaffer, Jesus Olvera, et al. “Exome Sequencing Can Improve Diagnosis and Alter Patient Management.” Science Translational Medicine. American Association for the Advancement of Science, 2012. https://doi.org/10.1126/scitranslmed.3003544.","ista":"Dixon Salazar T, Silhavy J, Udpa N, Schroth J, Bielas S, Schaffer A, Olvera J, Bafna V, Zaki M, Abdel Salam G, Mansour L, Selim L, Abdel Hadi S, Marzouki N, Ben Omran T, Al Saana N, Sönmez F, Celep F, Azam M, Hill K, Collazo A, Fenstermaker A, Novarino G, Akizu N, Garimella K, Sougnez C, Russ C, Gabriel S, Gleeson J. 2012. Exome sequencing can improve diagnosis and alter patient management. Science Translational Medicine. 4(138)."},"month":"06","intvolume":" 4","publisher":"American Association for the Advancement of Science","quality_controlled":0,"abstract":[{"lang":"eng","text":"The translation of "next-generation" sequencing directly to the clinic is still being assessed but has the potential for genetic diseases to reduce costs, advance accuracy, and point to unsuspected yet treatable conditions. To study its capability in the clinic, we performed whole-exome sequencing in 118 probands with a diagnosis of a pediatric-onset neurodevelopmental disease in which most known causes had been excluded. Twenty-two genes not previously identified as disease-causing were identified in this study (19% of cohort), further establishing exome sequencing as a useful tool for gene discovery. New genes identified included EXOC8 in Joubert syndrome and GFM2 in a patient with microcephaly, simplified gyral pattern, and insulin-dependent diabetes. Exome sequencing uncovered 10 probands (8% of cohort) with mutations in genes known to cause a disease different from the initial diagnosis. Upon further medical evaluation, these mutations were found to account for each proband's disease, leading to a change in diagnosis, some of which led to changes in patient management. Our data provide proof of principle that genomic strategies are useful in clarifying diagnosis in a proportion of patients with neurodevelopmental disorders."}],"volume":4,"issue":"138","date_published":"2012-06-13T00:00:00Z","doi":"10.1126/scitranslmed.3003544","date_created":"2018-12-11T11:56:56Z","day":"13","publication":"Science Translational Medicine","year":"2012","publication_status":"published"},{"abstract":[{"text":"Autism spectrum disorders are a genetically heterogeneous constellation of syndromes characterized by impairments in reciprocal social interaction. Available somatic treatments have limited efficacy. We have identified inactivating mutations in the gene BCKDK (Branched Chain Ketoacid Dehydrogenase Kinase) in consanguineous families with autism, epilepsy, and intellectual disability. The encoded protein is responsible for phosphorylation-mediated inactivation of the E1α subunit of branched-chain ketoacid dehydrogenase (BCKDH). Patients with homozygous BCKDK mutations display reductions in BCKDK messenger RNA and protein, E1α phosphorylation, and plasma branched-chain amino acids. Bckdk knockout mice show abnormal brain amino acid profiles and neurobehavioral deficits that respond to dietary supplementation. Thus, autism presenting with intellectual disability and epilepsy caused by BCKDK mutations represents a potentially treatable syndrome.","lang":"eng"}],"intvolume":" 338","month":"10","publisher":"American Association for the Advancement of Science","quality_controlled":0,"publication":"Science","day":"19","year":"2012","publication_status":"published","date_created":"2018-12-11T11:56:56Z","date_published":"2012-10-19T00:00:00Z","volume":338,"issue":"6105","doi":"10.1126/science.1224631","page":"394 - 397","_id":"2314","status":"public","type":"journal_article","extern":1,"citation":{"mla":"Novarino, Gaia, et al. “Mutations in BCKD-Kinase Lead to a Potentially Treatable Form of Autism with Epilepsy.” Science, vol. 338, no. 6105, American Association for the Advancement of Science, 2012, pp. 394–97, doi:10.1126/science.1224631.","apa":"Novarino, G., El Fishawy, P., Kayserili, H., Meguid, N., Scott, E., Schroth, J., … Gleeson, J. (2012). Mutations in BCKD-kinase lead to a potentially treatable form of autism with epilepsy. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1224631","ama":"Novarino G, El Fishawy P, Kayserili H, et al. Mutations in BCKD-kinase lead to a potentially treatable form of autism with epilepsy. Science. 2012;338(6105):394-397. doi:10.1126/science.1224631","short":"G. Novarino, P. El Fishawy, H. Kayserili, N. Meguid, E. Scott, J. Schroth, J. Silhavy, M. Kara, R. Khalil, T. Ben Omran, A. Ercan Sencicek, A. Hashish, S. Sanders, A. Gupta, H. Hashem, D. Matern, S. Gabriel, L. Sweetman, Y. Rahimi, R. Harris, M. State, J. Gleeson, Science 338 (2012) 394–397.","ieee":"G. Novarino et al., “Mutations in BCKD-kinase lead to a potentially treatable form of autism with epilepsy,” Science, vol. 338, no. 6105. American Association for the Advancement of Science, pp. 394–397, 2012.","chicago":"Novarino, Gaia, Paul El Fishawy, Hülya Kayserili, Nagwa Meguid, Eric Scott, Jana Schroth, Jennifer Silhavy, et al. “Mutations in BCKD-Kinase Lead to a Potentially Treatable Form of Autism with Epilepsy.” Science. American Association for the Advancement of Science, 2012. https://doi.org/10.1126/science.1224631.","ista":"Novarino G, El Fishawy P, Kayserili H, Meguid N, Scott E, Schroth J, Silhavy J, Kara M, Khalil R, Ben Omran T, Ercan Sencicek A, Hashish A, Sanders S, Gupta A, Hashem H, Matern D, Gabriel S, Sweetman L, Rahimi Y, Harris R, State M, Gleeson J. 2012. Mutations in BCKD-kinase lead to a potentially treatable form of autism with epilepsy. Science. 338(6105), 394–397."},"date_updated":"2021-01-12T06:56:43Z","title":"Mutations in BCKD-kinase lead to a potentially treatable form of autism with epilepsy","author":[{"id":"3E57A680-F248-11E8-B48F-1D18A9856A87","first_name":"Gaia","last_name":"Novarino","full_name":"Gaia Novarino","orcid":"0000-0002-7673-7178"},{"first_name":"Paul","full_name":"El-Fishawy, Paul","last_name":"El Fishawy"},{"first_name":"Hülya","last_name":"Kayserili","full_name":"Kayserili, Hülya"},{"last_name":"Meguid","full_name":"Meguid, Nagwa A","first_name":"Nagwa"},{"first_name":"Eric","last_name":"Scott","full_name":"Scott, Eric M"},{"first_name":"Jana","full_name":"Schroth, Jana","last_name":"Schroth"},{"first_name":"Jennifer","last_name":"Silhavy","full_name":"Silhavy, Jennifer L"},{"first_name":"Majdi","last_name":"Kara","full_name":"Kara, Majdi"},{"first_name":"Rehab","full_name":"Khalil, Rehab O","last_name":"Khalil"},{"last_name":"Ben Omran","full_name":"Ben-Omran, Tawfeg I","first_name":"Tawfeg"},{"first_name":"Adife","last_name":"Ercan Sencicek","full_name":"Ercan-Sencicek, Adife G"},{"first_name":"Adel","last_name":"Hashish","full_name":"Hashish, Adel F"},{"last_name":"Sanders","full_name":"Sanders, Stephan J","first_name":"Stephan"},{"first_name":"Abha","full_name":"Gupta, Abha R","last_name":"Gupta"},{"last_name":"Hashem","full_name":"Hashem, Hebatalla S","first_name":"Hebatalla"},{"first_name":"Dietrich","last_name":"Matern","full_name":"Matern, Dietrich"},{"first_name":"Stacey","full_name":"Gabriel, Stacey B","last_name":"Gabriel"},{"full_name":"Sweetman, Lawrence","last_name":"Sweetman","first_name":"Lawrence"},{"full_name":"Rahimi, Yasmeen","last_name":"Rahimi","first_name":"Yasmeen"},{"first_name":"Robert","last_name":"Harris","full_name":"Harris, Robert A"},{"full_name":"State, Matthew W","last_name":"State","first_name":"Matthew"},{"last_name":"Gleeson","full_name":"Gleeson, Joseph G","first_name":"Joseph"}],"publist_id":"4613"},{"oa_version":"Preprint","acknowledgement":"Partial financial support by NSERC ","abstract":[{"text":"We show that bosons interacting via pair potentials with negative scattering length form bound states for a suitable number of particles. In other words, the absence of many-particle bound states of any kind implies the non-negativity of the scattering length of the interaction potential. ","lang":"eng"}],"month":"06","intvolume":" 2","quality_controlled":"1","publisher":"European Mathematical Society","oa":1,"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1204.0435"}],"day":"24","language":[{"iso":"eng"}],"publication":"Journal of Spectral Theory","publication_status":"published","year":"2012","issue":"3","date_published":"2012-06-24T00:00:00Z","doi":"10.4171/JST/31","volume":2,"date_created":"2018-12-11T11:56:58Z","page":"321-328","_id":"2318","status":"public","type":"journal_article","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","date_updated":"2021-01-12T06:56:44Z","citation":{"chicago":"Seiringer, Robert. “Absence of Bound States Implies Non-Negativity of the Scattering Length.” Journal of Spectral Theory. European Mathematical Society, 2012. https://doi.org/10.4171/JST/31.","ista":"Seiringer R. 2012. Absence of bound states implies non-negativity of the scattering length. Journal of Spectral Theory. 2(3), 321–328.","mla":"Seiringer, Robert. “Absence of Bound States Implies Non-Negativity of the Scattering Length.” Journal of Spectral Theory, vol. 2, no. 3, European Mathematical Society, 2012, pp. 321–28, doi:10.4171/JST/31.","short":"R. Seiringer, Journal of Spectral Theory 2 (2012) 321–328.","ieee":"R. Seiringer, “Absence of bound states implies non-negativity of the scattering length,” Journal of Spectral Theory, vol. 2, no. 3. European Mathematical Society, pp. 321–328, 2012.","ama":"Seiringer R. Absence of bound states implies non-negativity of the scattering length. Journal of Spectral Theory. 2012;2(3):321-328. doi:10.4171/JST/31","apa":"Seiringer, R. (2012). Absence of bound states implies non-negativity of the scattering length. Journal of Spectral Theory. European Mathematical Society. https://doi.org/10.4171/JST/31"},"department":[{"_id":"RoSe"}],"title":"Absence of bound states implies non-negativity of the scattering length","publist_id":"4609","author":[{"id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","first_name":"Robert","last_name":"Seiringer","full_name":"Seiringer, Robert","orcid":"0000-0002-6781-0521"}]},{"date_updated":"2021-01-12T06:56:44Z","citation":{"short":"R. Frank, C. Hainzl, R. Seiringer, J. Solovej, in:, World Scientific Publishing, 2012, pp. 575–583.","ieee":"R. Frank, C. Hainzl, R. Seiringer, and J. Solovej, “Microscopic derivation of the Ginzburg-Landau model,” presented at the ICMP: International Congress on Mathematical Physics, 2012, pp. 575–583.","apa":"Frank, R., Hainzl, C., Seiringer, R., & Solovej, J. (2012). Microscopic derivation of the Ginzburg-Landau model (pp. 575–583). Presented at the ICMP: International Congress on Mathematical Physics, World Scientific Publishing. https://doi.org/10.1142/9789814449243_0060","ama":"Frank R, Hainzl C, Seiringer R, Solovej J. Microscopic derivation of the Ginzburg-Landau model. In: World Scientific Publishing; 2012:575-583. doi:10.1142/9789814449243_0060","mla":"Frank, Rupert, et al. Microscopic Derivation of the Ginzburg-Landau Model. World Scientific Publishing, 2012, pp. 575–83, doi:10.1142/9789814449243_0060.","ista":"Frank R, Hainzl C, Seiringer R, Solovej J. 2012. Microscopic derivation of the Ginzburg-Landau model. ICMP: International Congress on Mathematical Physics, 575–583.","chicago":"Frank, Rupert, Christian Hainzl, Robert Seiringer, and Jan Solovej. “Microscopic Derivation of the Ginzburg-Landau Model,” 575–83. World Scientific Publishing, 2012. https://doi.org/10.1142/9789814449243_0060."},"extern":1,"publist_id":"4610","author":[{"full_name":"Frank, Rupert L","last_name":"Frank","first_name":"Rupert"},{"last_name":"Hainzl","full_name":"Hainzl, Christian","first_name":"Christian"},{"first_name":"Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","last_name":"Seiringer","orcid":"0000-0002-6781-0521","full_name":"Robert Seiringer"},{"first_name":"Jan","last_name":"Solovej","full_name":"Solovej, Jan P"}],"title":"Microscopic derivation of the Ginzburg-Landau model","_id":"2317","conference":{"name":"ICMP: International Congress on Mathematical Physics"},"type":"conference","status":"public","year":"2012","publication_status":"published","day":"01","page":"575 - 583","date_created":"2018-12-11T11:56:57Z","doi":"10.1142/9789814449243_0060","date_published":"2012-08-01T00:00:00Z","abstract":[{"lang":"eng","text":"We present a summary of our recent rigorous derivation of the celebrated Ginzburg-Landau (GL) theory, starting from the microscopic Bardeen-Cooper-Schrieffer (BCS) model. Close to the critical temperature, GL arises as an effective theory on the macroscopic scale. The relevant scaling limit is semiclassical in nature, and semiclassical analysis, with minimal regularity assumptions, plays an important part in our proof. "}],"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1209.1080"}],"oa":1,"quality_controlled":0,"publisher":"World Scientific Publishing","month":"08"},{"day":"01","year":"2012","publication_status":"published","date_created":"2018-12-11T11:56:57Z","doi":"10.1142/9789814449243_0045","date_published":"2012-08-01T00:00:00Z","page":"477 - 485","abstract":[{"text":"We summarize our recent results on the ground state energy of multi-polaron systems. In particular, we discuss stability and existence of the thermodynamic limit, and we discuss the absence of binding in the case of large Coulomb repulsion and the corresponding binding-unbinding transition. We also consider the Pekar-Tomasevich approximation to the ground state energy and we study radial symmetry of the ground state density. ","lang":"eng"}],"month":"08","oa":1,"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1209.3717"}],"quality_controlled":0,"publisher":"World Scientific Publishing","extern":1,"citation":{"ista":"Frank R, Lieb É, Seiringer R, Thomas L. 2012. Ground state properties of multi-polaron systems. ICMP: International Congress on Mathematical Physics, 477–485.","chicago":"Frank, Rupert, Élliott Lieb, Robert Seiringer, and Lawrence Thomas. “Ground State Properties of Multi-Polaron Systems,” 477–85. World Scientific Publishing, 2012. https://doi.org/10.1142/9789814449243_0045.","ieee":"R. Frank, É. Lieb, R. Seiringer, and L. Thomas, “Ground state properties of multi-polaron systems,” presented at the ICMP: International Congress on Mathematical Physics, 2012, pp. 477–485.","short":"R. Frank, É. Lieb, R. Seiringer, L. Thomas, in:, World Scientific Publishing, 2012, pp. 477–485.","apa":"Frank, R., Lieb, É., Seiringer, R., & Thomas, L. (2012). Ground state properties of multi-polaron systems (pp. 477–485). Presented at the ICMP: International Congress on Mathematical Physics, World Scientific Publishing. https://doi.org/10.1142/9789814449243_0045","ama":"Frank R, Lieb É, Seiringer R, Thomas L. Ground state properties of multi-polaron systems. In: World Scientific Publishing; 2012:477-485. doi:10.1142/9789814449243_0045","mla":"Frank, Rupert, et al. Ground State Properties of Multi-Polaron Systems. World Scientific Publishing, 2012, pp. 477–85, doi:10.1142/9789814449243_0045."},"date_updated":"2021-01-12T06:56:44Z","title":"Ground state properties of multi-polaron systems","author":[{"last_name":"Frank","full_name":"Frank, Rupert L","first_name":"Rupert"},{"first_name":"Élliott","full_name":"Lieb, Élliott H","last_name":"Lieb"},{"full_name":"Robert Seiringer","orcid":"0000-0002-6781-0521","last_name":"Seiringer","first_name":"Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Lawrence","last_name":"Thomas","full_name":"Thomas, Lawrence E"}],"publist_id":"4611","_id":"2316","status":"public","conference":{"name":"ICMP: International Congress on Mathematical Physics"},"type":"conference"},{"_id":"237","status":"public","type":"journal_article","extern":1,"date_updated":"2021-01-12T06:57:04Z","citation":{"ista":"De La Bretèche R, Browning TD, Peyre E. 2012. On Manin’s conjecture for a family of Châtelet surfaces. Annals of Mathematics. 175(1), 297–343.","chicago":"De La Bretèche, Régis, Timothy D Browning, and Emmanuel Peyre. “On Manin’s Conjecture for a Family of Châtelet Surfaces.” Annals of Mathematics. Princeton University Press, 2012. https://doi.org/10.4007/annals.2012.175.1.8.","apa":"De La Bretèche, R., Browning, T. D., & Peyre, E. (2012). On Manin’s conjecture for a family of Châtelet surfaces. Annals of Mathematics. Princeton University Press. https://doi.org/10.4007/annals.2012.175.1.8","ama":"De La Bretèche R, Browning TD, Peyre E. On Manin’s conjecture for a family of Châtelet surfaces. Annals of Mathematics. 2012;175(1):297-343. doi:10.4007/annals.2012.175.1.8","short":"R. De La Bretèche, T.D. Browning, E. Peyre, Annals of Mathematics 175 (2012) 297–343.","ieee":"R. De La Bretèche, T. D. Browning, and E. Peyre, “On Manin’s conjecture for a family of Châtelet surfaces,” Annals of Mathematics, vol. 175, no. 1. Princeton University Press, pp. 297–343, 2012.","mla":"De La Bretèche, Régis, et al. “On Manin’s Conjecture for a Family of Châtelet Surfaces.” Annals of Mathematics, vol. 175, no. 1, Princeton University Press, 2012, pp. 297–343, doi:10.4007/annals.2012.175.1.8."},"title":"On Manin's conjecture for a family of Châtelet surfaces","author":[{"last_name":"De La Bretèche","full_name":"de la Bretèche, Régis","first_name":"Régis"},{"full_name":"Timothy Browning","orcid":"0000-0002-8314-0177","last_name":"Browning","first_name":"Timothy D","id":"35827D50-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Peyre, Emmanuel","last_name":"Peyre","first_name":"Emmanuel"}],"publist_id":"7667","acknowledgement":"EP/E053262/1\tEngineering and Physical Sciences Research Council","abstract":[{"lang":"eng","text":"The Manin conjecture is established for Châtelet surfaces over Q aris-ing as minimal proper smooth models of the surface Y 2 + Z 2 = f(X) in A 3 Q, where f ∈ Z[X] is a totally reducible polynomial of degree 3 without repeated roots. These surfaces do not satisfy weak approximation."}],"month":"01","intvolume":" 175","publisher":"Princeton University Press","quality_controlled":0,"day":"01","publication":"Annals of Mathematics","publication_status":"published","year":"2012","issue":"1","volume":175,"date_published":"2012-01-01T00:00:00Z","doi":"10.4007/annals.2012.175.1.8","date_created":"2018-12-11T11:45:22Z","page":"297 - 343"},{"extern":1,"citation":{"mla":"Baier, Stephan, and Timothy D. Browning. “Inhomogeneous Quadratic Congruences.” Functiones et Approximatio, Commentarii Mathematici, vol. 47, no. 2, Adam Mickiewicz University Press, 2012, pp. 267–86, doi:10.7169/facm/2012.47.2.9.","ama":"Baier S, Browning TD. Inhomogeneous quadratic congruences. Functiones et Approximatio, Commentarii Mathematici. 2012;47(2):267-286. doi:10.7169/facm/2012.47.2.9","apa":"Baier, S., & Browning, T. D. (2012). Inhomogeneous quadratic congruences. Functiones et Approximatio, Commentarii Mathematici. Adam Mickiewicz University Press. https://doi.org/10.7169/facm/2012.47.2.9","short":"S. Baier, T.D. Browning, Functiones et Approximatio, Commentarii Mathematici 47 (2012) 267–286.","ieee":"S. Baier and T. D. Browning, “Inhomogeneous quadratic congruences,” Functiones et Approximatio, Commentarii Mathematici, vol. 47, no. 2. Adam Mickiewicz University Press, pp. 267–286, 2012.","chicago":"Baier, Stephan, and Timothy D Browning. “Inhomogeneous Quadratic Congruences.” Functiones et Approximatio, Commentarii Mathematici. Adam Mickiewicz University Press, 2012. https://doi.org/10.7169/facm/2012.47.2.9.","ista":"Baier S, Browning TD. 2012. Inhomogeneous quadratic congruences. Functiones et Approximatio, Commentarii Mathematici. 47(2), 267–286."},"date_updated":"2021-01-12T06:57:08Z","title":"Inhomogeneous quadratic congruences","author":[{"first_name":"Stephan","full_name":"Baier, Stephan","last_name":"Baier"},{"id":"35827D50-F248-11E8-B48F-1D18A9856A87","first_name":"Timothy D","last_name":"Browning","orcid":"0000-0002-8314-0177","full_name":"Timothy Browning"}],"publist_id":"7666","_id":"238","status":"public","type":"journal_article","day":"20","publication":"Functiones et Approximatio, Commentarii Mathematici","year":"2012","publication_status":"published","doi":"10.7169/facm/2012.47.2.9","issue":"2","date_published":"2012-12-20T00:00:00Z","volume":47,"date_created":"2018-12-11T11:45:22Z","page":"267 - 286","acknowledgement":"EP/E053262/1\tEngineering and Physical Sciences Research Council","abstract":[{"lang":"eng","text":"For given positive integers a, b, q we investigate the density of solutions (x, y) ∈ Z2 to congruences ax + by2 ≡ 0 mod q."}],"month":"12","intvolume":" 47","publisher":"Adam Mickiewicz University Press","quality_controlled":0},{"day":"01","publication":"Quantum Many Body Systems","publication_status":"published","year":"2012","doi":"10.1007/978-3-642-29511-9_2","date_published":"2012-01-01T00:00:00Z","volume":2051,"date_created":"2018-12-11T11:57:26Z","page":"55 - 92","abstract":[{"lang":"eng","text":"Bose–Einstein condensation (BEC) in cold atomic gases was first achieved experimentally in 1995 [1, 6]. After initial failed attempts with spin-polarized atomic hydrogen, the first successful demonstrations of this phenomenon used gases of rubidium and sodium atoms, respectively. Since then there has been a surge of activity in this field, with ingenious experiments putting forth more and more astonishing results about the behavior of matter at very cold temperatures.\n"}],"month":"01","intvolume":" 2051","alternative_title":["Lecture Notes in Mathematics"],"quality_controlled":0,"publisher":"Springer","extern":1,"citation":{"short":"R. Seiringer, in:, V. Rivasseau, R. Seiringer, J. Solovej, T. Spencer (Eds.), Quantum Many Body Systems, Springer, 2012, pp. 55–92.","ieee":"R. Seiringer, “Cold quantum gases and bose einstein condensation,” in Quantum Many Body Systems, vol. 2051, V. Rivasseau, R. Seiringer, J. Solovej, and T. Spencer, Eds. Springer, 2012, pp. 55–92.","apa":"Seiringer, R. (2012). Cold quantum gases and bose einstein condensation. In V. Rivasseau, R. Seiringer, J. Solovej, & T. Spencer (Eds.), Quantum Many Body Systems (Vol. 2051, pp. 55–92). Springer. https://doi.org/10.1007/978-3-642-29511-9_2","ama":"Seiringer R. Cold quantum gases and bose einstein condensation. In: Rivasseau V, Seiringer R, Solovej J, Spencer T, eds. Quantum Many Body Systems. Vol 2051. Springer; 2012:55-92. doi:10.1007/978-3-642-29511-9_2","mla":"Seiringer, Robert. “Cold Quantum Gases and Bose Einstein Condensation.” Quantum Many Body Systems, edited by Vincent Rivasseau et al., vol. 2051, Springer, 2012, pp. 55–92, doi:10.1007/978-3-642-29511-9_2.","ista":"Seiringer R. 2012.Cold quantum gases and bose einstein condensation. In: Quantum Many Body Systems. Lecture Notes in Mathematics, vol. 2051, 55–92.","chicago":"Seiringer, Robert. “Cold Quantum Gases and Bose Einstein Condensation.” In Quantum Many Body Systems, edited by Vincent Rivasseau, Robert Seiringer, Jan Solovej, and Thomas Spencer, 2051:55–92. Springer, 2012. https://doi.org/10.1007/978-3-642-29511-9_2."},"date_updated":"2021-01-12T06:57:14Z","title":"Cold quantum gases and bose einstein condensation","editor":[{"first_name":"Vincent","full_name":"Rivasseau, Vincent","last_name":"Rivasseau"},{"first_name":"Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","last_name":"Seiringer","full_name":"Robert Seiringer","orcid":"0000-0002-6781-0521"},{"first_name":"Jan","full_name":"Solovej, Jan P","last_name":"Solovej"},{"first_name":"Thomas","last_name":"Spencer","full_name":"Spencer, Thomas"}],"publist_id":"4526","author":[{"orcid":"0000-0002-6781-0521","full_name":"Robert Seiringer","last_name":"Seiringer","first_name":"Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87"}],"_id":"2399","status":"public","type":"book_chapter"},{"publication":"Journal of Mathematical Physics","day":"01","publication_status":"published","year":"2012","date_created":"2018-12-11T11:57:25Z","volume":53,"date_published":"2012-01-01T00:00:00Z","doi":"10.1063/1.3670747","issue":"1","abstract":[{"text":"We study the BCS gap equation for a Fermi gas with unequal population of spin-up and spin-down states. For cosh (δ μ/T) ≤ 2, with T the temperature and δμ the chemical potential difference, the question of existence of non-trivial solutions can be reduced to spectral properties of a linear operator, similar to the unpolarized case studied previously in [Frank, R. L., Hainzl, C., Naboko, S., and Seiringer, R., J., Geom. Anal.17, 559-567 (2007)10.1007/BF02937429; Hainzl, C., Hamza, E., Seiringer, R., and Solovej, J. P., Commun., Math. Phys.281, 349-367 (2008)10.1007/s00220-008-0489-2; and Hainzl, C. and Seiringer, R., Phys. Rev. B77, 184517-110 435 (2008)]10.1103/PhysRevB.77.184517. For cosh (δ μ/T) > 2 the phase diagram is more complicated, however. We derive upper and lower bounds for the critical temperature, and study their behavior in the small coupling limit.","lang":"eng"}],"intvolume":" 53","month":"01","quality_controlled":0,"publisher":"American Institute of Physics","extern":1,"citation":{"chicago":"Freiji, Abraham, Christian Hainzl, and Robert Seiringer. “The Gap Equation for Spin-Polarized Fermions.” Journal of Mathematical Physics. American Institute of Physics, 2012. https://doi.org/10.1063/1.3670747.","ista":"Freiji A, Hainzl C, Seiringer R. 2012. The gap equation for spin-polarized fermions. Journal of Mathematical Physics. 53(1).","mla":"Freiji, Abraham, et al. “The Gap Equation for Spin-Polarized Fermions.” Journal of Mathematical Physics, vol. 53, no. 1, American Institute of Physics, 2012, doi:10.1063/1.3670747.","apa":"Freiji, A., Hainzl, C., & Seiringer, R. (2012). The gap equation for spin-polarized fermions. Journal of Mathematical Physics. American Institute of Physics. https://doi.org/10.1063/1.3670747","ama":"Freiji A, Hainzl C, Seiringer R. The gap equation for spin-polarized fermions. Journal of Mathematical Physics. 2012;53(1). doi:10.1063/1.3670747","short":"A. Freiji, C. Hainzl, R. Seiringer, Journal of Mathematical Physics 53 (2012).","ieee":"A. Freiji, C. Hainzl, and R. Seiringer, “The gap equation for spin-polarized fermions,” Journal of Mathematical Physics, vol. 53, no. 1. American Institute of Physics, 2012."},"date_updated":"2021-01-12T06:57:13Z","title":"The gap equation for spin-polarized fermions","author":[{"last_name":"Freiji","full_name":"Freiji, Abraham","first_name":"Abraham"},{"full_name":"Hainzl, Christian","last_name":"Hainzl","first_name":"Christian"},{"last_name":"Seiringer","orcid":"0000-0002-6781-0521","full_name":"Robert Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","first_name":"Robert"}],"publist_id":"4532","_id":"2394","status":"public","type":"journal_article"},{"title":"Microscopic derivation of Ginzburg-Landau theory","author":[{"first_name":"Rupert","full_name":"Frank, Rupert L","last_name":"Frank"},{"last_name":"Hainzl","full_name":"Hainzl, Christian","first_name":"Christian"},{"id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","first_name":"Robert","last_name":"Seiringer","full_name":"Robert Seiringer","orcid":"0000-0002-6781-0521"},{"first_name":"Jan","last_name":"Solovej","full_name":"Solovej, Jan P"}],"publist_id":"4531","extern":1,"citation":{"chicago":"Frank, Rupert, Christian Hainzl, Robert Seiringer, and Jan Solovej. “Microscopic Derivation of Ginzburg-Landau Theory.” Journal of the American Mathematical Society. American Mathematical Society, 2012. https://doi.org/10.1090/S0894-0347-2012-00735-8.","ista":"Frank R, Hainzl C, Seiringer R, Solovej J. 2012. Microscopic derivation of Ginzburg-Landau theory. Journal of the American Mathematical Society. 25(3), 667–713.","mla":"Frank, Rupert, et al. “Microscopic Derivation of Ginzburg-Landau Theory.” Journal of the American Mathematical Society, vol. 25, no. 3, American Mathematical Society, 2012, pp. 667–713, doi:10.1090/S0894-0347-2012-00735-8.","ieee":"R. Frank, C. Hainzl, R. Seiringer, and J. Solovej, “Microscopic derivation of Ginzburg-Landau theory,” Journal of the American Mathematical Society, vol. 25, no. 3. American Mathematical Society, pp. 667–713, 2012.","short":"R. Frank, C. Hainzl, R. Seiringer, J. Solovej, Journal of the American Mathematical Society 25 (2012) 667–713.","ama":"Frank R, Hainzl C, Seiringer R, Solovej J. Microscopic derivation of Ginzburg-Landau theory. Journal of the American Mathematical Society. 2012;25(3):667-713. doi:10.1090/S0894-0347-2012-00735-8","apa":"Frank, R., Hainzl, C., Seiringer, R., & Solovej, J. (2012). Microscopic derivation of Ginzburg-Landau theory. Journal of the American Mathematical Society. American Mathematical Society. https://doi.org/10.1090/S0894-0347-2012-00735-8"},"date_updated":"2021-01-12T06:57:13Z","status":"public","type":"journal_article","_id":"2395","date_created":"2018-12-11T11:57:25Z","volume":25,"issue":"3","doi":"10.1090/S0894-0347-2012-00735-8","date_published":"2012-01-01T00:00:00Z","page":"667 - 713","publication":"Journal of the American Mathematical Society","day":"01","publication_status":"published","year":"2012","intvolume":" 25","month":"01","oa":1,"main_file_link":[{"url":"http://arxiv.org/abs/1102.4001","open_access":"1"}],"quality_controlled":0,"publisher":"American Mathematical Society","abstract":[{"lang":"eng","text":"We give the first rigorous derivation of the celebrated Ginzburg-Landau (GL) theory, starting from the microscopic Bardeen-Cooper-Schrieffer (BCS) model. Close to the critical temperature, GL arises as an effective theory on the macroscopic scale. The relevant scaling limit is semiclassical in nature, and semiclassical analysis, with minimal regularity assumptions, plays an important part in our proof. "}]},{"date_created":"2018-12-11T11:57:25Z","volume":100,"date_published":"2012-06-01T00:00:00Z","doi":"10.1007/s11005-012-0566-5","issue":"3","page":"237 - 243","publication":"Letters in Mathematical Physics","day":"01","publication_status":"published","year":"2012","intvolume":" 100","month":"06","oa":1,"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1111.1683"}],"quality_controlled":0,"publisher":"Springer","abstract":[{"text":"A positive temperature analogue of the scattering length of a potential V can be defined via integrating the difference of the heat kernels of -Δ and, with Δ the Laplacian. An upper bound on this quantity is a crucial input in the derivation of a bound on the critical temperature of a dilute Bose gas (Seiringer and Ueltschi in Phys Rev B 80:014502, 2009). In (Seiringer and Ueltschi in Phys Rev B 80:014502, 2009), a bound was given in the case of finite range potentials and sufficiently low temperature. In this paper, we improve the bound and extend it to potentials of infinite range.","lang":"eng"}],"title":"The scattering length at positive temperature","publist_id":"4529","author":[{"last_name":"Landon","full_name":"Landon, Benjamin","first_name":"Benjamin"},{"first_name":"Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","last_name":"Seiringer","orcid":"0000-0002-6781-0521","full_name":"Robert Seiringer"}],"extern":1,"date_updated":"2021-01-12T06:57:13Z","citation":{"chicago":"Landon, Benjamin, and Robert Seiringer. “The Scattering Length at Positive Temperature.” Letters in Mathematical Physics. Springer, 2012. https://doi.org/10.1007/s11005-012-0566-5.","ista":"Landon B, Seiringer R. 2012. The scattering length at positive temperature. Letters in Mathematical Physics. 100(3), 237–243.","mla":"Landon, Benjamin, and Robert Seiringer. “The Scattering Length at Positive Temperature.” Letters in Mathematical Physics, vol. 100, no. 3, Springer, 2012, pp. 237–43, doi:10.1007/s11005-012-0566-5.","ama":"Landon B, Seiringer R. The scattering length at positive temperature. Letters in Mathematical Physics. 2012;100(3):237-243. doi:10.1007/s11005-012-0566-5","apa":"Landon, B., & Seiringer, R. (2012). The scattering length at positive temperature. Letters in Mathematical Physics. Springer. https://doi.org/10.1007/s11005-012-0566-5","ieee":"B. Landon and R. Seiringer, “The scattering length at positive temperature,” Letters in Mathematical Physics, vol. 100, no. 3. Springer, pp. 237–243, 2012.","short":"B. Landon, R. Seiringer, Letters in Mathematical Physics 100 (2012) 237–243."},"status":"public","type":"journal_article","_id":"2396"},{"intvolume":" 24","month":"07","main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1109.3804"}],"oa":1,"publisher":"World Scientific Publishing","quality_controlled":0,"abstract":[{"text":"We extend the mathematical theory of quantum hypothesis testing to the general W*-algebraic setting and explore its relation with recent developments in non-equilibrium quantum statistical mechanics. In particular, we relate the large deviation principle for the full counting statistics of entropy flow to quantum hypothesis testing of the arrow of time.","lang":"eng"}],"date_created":"2018-12-11T11:57:26Z","volume":24,"issue":"6","doi":"10.1142/S0129055X12300026","date_published":"2012-07-01T00:00:00Z","publication":"Reviews in Mathematical Physics","day":"01","year":"2012","publication_status":"published","status":"public","type":"review","_id":"2398","title":"Quantum hypothesis testing and non-equilibrium statistical mechanics","publist_id":"4528","author":[{"first_name":"Vojkan","full_name":"Jakšić, Vojkan","last_name":"Jakšić"},{"first_name":"Yoshiko","last_name":"Ogata","full_name":"Ogata, Yoshiko"},{"first_name":"Claude","full_name":"Pillet, Claude A","last_name":"Pillet"},{"last_name":"Seiringer","full_name":"Robert Seiringer","orcid":"0000-0002-6781-0521","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","first_name":"Robert"}],"extern":1,"citation":{"mla":"Jakšić, Vojkan, et al. “Quantum Hypothesis Testing and Non-Equilibrium Statistical Mechanics.” Reviews in Mathematical Physics, vol. 24, no. 6, World Scientific Publishing, 2012, doi:10.1142/S0129055X12300026.","short":"V. Jakšić, Y. Ogata, C. Pillet, R. Seiringer, Reviews in Mathematical Physics 24 (2012).","ieee":"V. Jakšić, Y. Ogata, C. Pillet, and R. Seiringer, “Quantum hypothesis testing and non-equilibrium statistical mechanics,” Reviews in Mathematical Physics, vol. 24, no. 6. World Scientific Publishing, 2012.","ama":"Jakšić V, Ogata Y, Pillet C, Seiringer R. Quantum hypothesis testing and non-equilibrium statistical mechanics. Reviews in Mathematical Physics. 2012;24(6). doi:10.1142/S0129055X12300026","apa":"Jakšić, V., Ogata, Y., Pillet, C., & Seiringer, R. (2012). Quantum hypothesis testing and non-equilibrium statistical mechanics. Reviews in Mathematical Physics. World Scientific Publishing. https://doi.org/10.1142/S0129055X12300026","chicago":"Jakšić, Vojkan, Yoshiko Ogata, Claude Pillet, and Robert Seiringer. “Quantum Hypothesis Testing and Non-Equilibrium Statistical Mechanics.” Reviews in Mathematical Physics. World Scientific Publishing, 2012. https://doi.org/10.1142/S0129055X12300026.","ista":"Jakšić V, Ogata Y, Pillet C, Seiringer R. 2012. Quantum hypothesis testing and non-equilibrium statistical mechanics. Reviews in Mathematical Physics. 24(6)."},"date_updated":"2020-07-14T12:45:40Z"},{"year":"2012","publication_status":"published","publication":"Letters in Mathematical Physics","day":"01","page":"119 - 138","date_created":"2018-12-11T11:57:25Z","date_published":"2012-05-01T00:00:00Z","doi":"10.1007/s11005-011-0535-4","issue":"2","volume":100,"abstract":[{"lang":"eng","text":"We consider the low-density limit of a Fermi gas in the BCS approximation. We show that if the interaction potential allows for a two-particle bound state, the system at zero temperature is well approximated by the Gross-Pitaevskii functional, describing a Bose-Einstein condensate of fermion pairs."}],"main_file_link":[{"url":"http://arxiv.org/abs/1105.1100","open_access":"1"}],"oa":1,"publisher":"Springer","quality_controlled":0,"intvolume":" 100","month":"05","citation":{"ista":"Hainzl C, Seiringer R. 2012. Low density limit of BCS theory and Bose-Einstein condensation of Fermion pairs. Letters in Mathematical Physics. 100(2), 119–138.","chicago":"Hainzl, Christian, and Robert Seiringer. “Low Density Limit of BCS Theory and Bose-Einstein Condensation of Fermion Pairs.” Letters in Mathematical Physics. Springer, 2012. https://doi.org/10.1007/s11005-011-0535-4.","apa":"Hainzl, C., & Seiringer, R. (2012). Low density limit of BCS theory and Bose-Einstein condensation of Fermion pairs. Letters in Mathematical Physics. Springer. https://doi.org/10.1007/s11005-011-0535-4","ama":"Hainzl C, Seiringer R. Low density limit of BCS theory and Bose-Einstein condensation of Fermion pairs. Letters in Mathematical Physics. 2012;100(2):119-138. doi:10.1007/s11005-011-0535-4","short":"C. Hainzl, R. Seiringer, Letters in Mathematical Physics 100 (2012) 119–138.","ieee":"C. Hainzl and R. Seiringer, “Low density limit of BCS theory and Bose-Einstein condensation of Fermion pairs,” Letters in Mathematical Physics, vol. 100, no. 2. Springer, pp. 119–138, 2012.","mla":"Hainzl, Christian, and Robert Seiringer. “Low Density Limit of BCS Theory and Bose-Einstein Condensation of Fermion Pairs.” Letters in Mathematical Physics, vol. 100, no. 2, Springer, 2012, pp. 119–38, doi:10.1007/s11005-011-0535-4."},"date_updated":"2021-01-12T06:57:14Z","extern":1,"publist_id":"4530","author":[{"last_name":"Hainzl","full_name":"Hainzl, Christian","first_name":"Christian"},{"first_name":"Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","last_name":"Seiringer","full_name":"Robert Seiringer","orcid":"0000-0002-6781-0521"}],"title":"Low density limit of BCS theory and Bose-Einstein condensation of Fermion pairs","_id":"2397","type":"journal_article","status":"public"},{"extern":1,"date_updated":"2021-01-12T06:57:15Z","citation":{"chicago":"Browning, Timothy D, and K Van Valckenborgh. “Sums of Three Squareful Numbers.” Experimental Mathematics. Taylor & Francis, 2012. https://doi.org/10.1080/10586458.2011.605733.","ista":"Browning TD, Valckenborgh KV. 2012. Sums of three squareful numbers. Experimental Mathematics. 21(2), 204–211.","mla":"Browning, Timothy D., and K. Van Valckenborgh. “Sums of Three Squareful Numbers.” Experimental Mathematics, vol. 21, no. 2, Taylor & Francis, 2012, pp. 204–11, doi:10.1080/10586458.2011.605733.","ieee":"T. D. Browning and K. V. Valckenborgh, “Sums of three squareful numbers,” Experimental Mathematics, vol. 21, no. 2. Taylor & Francis, pp. 204–211, 2012.","short":"T.D. Browning, K.V. Valckenborgh, Experimental Mathematics 21 (2012) 204–211.","apa":"Browning, T. D., & Valckenborgh, K. V. (2012). Sums of three squareful numbers. Experimental Mathematics. Taylor & Francis. https://doi.org/10.1080/10586458.2011.605733","ama":"Browning TD, Valckenborgh KV. Sums of three squareful numbers. Experimental Mathematics. 2012;21(2):204-211. doi:10.1080/10586458.2011.605733"},"title":"Sums of three squareful numbers","publist_id":"7664","author":[{"last_name":"Browning","full_name":"Timothy Browning","orcid":"0000-0002-8314-0177","id":"35827D50-F248-11E8-B48F-1D18A9856A87","first_name":"Timothy D"},{"full_name":"Valckenborgh, K Van","last_name":"Valckenborgh","first_name":"K Van"}],"_id":"240","status":"public","type":"journal_article","publication":"Experimental Mathematics","day":"23","year":"2012","publication_status":"published","date_created":"2018-12-11T11:45:23Z","date_published":"2012-05-23T00:00:00Z","volume":21,"issue":"2","doi":"10.1080/10586458.2011.605733","page":"204 - 211","acknowledgement":"EP/E053262/1\tEngineering and Physical Sciences Research Council","abstract":[{"lang":"eng","text":"We investigate the frequency of positive squareful numbers x, y, z≤B for which x+y=z and present a conjecture concerning its asymptotic behavior."}],"intvolume":" 21","month":"05","quality_controlled":0,"publisher":"Taylor & Francis"},{"_id":"2400","type":"journal_article","status":"public","citation":{"ama":"Frank R, Lieb É, Seiringer R. Binding of polarons and atoms at threshold. Communications in Mathematical Physics. 2012;313(2):405-424. doi:10.1007/s00220-012-1436-9","apa":"Frank, R., Lieb, É., & Seiringer, R. (2012). Binding of polarons and atoms at threshold. Communications in Mathematical Physics. Springer. https://doi.org/10.1007/s00220-012-1436-9","ieee":"R. Frank, É. Lieb, and R. Seiringer, “Binding of polarons and atoms at threshold,” Communications in Mathematical Physics, vol. 313, no. 2. Springer, pp. 405–424, 2012.","short":"R. Frank, É. Lieb, R. Seiringer, Communications in Mathematical Physics 313 (2012) 405–424.","mla":"Frank, Rupert, et al. “Binding of Polarons and Atoms at Threshold.” Communications in Mathematical Physics, vol. 313, no. 2, Springer, 2012, pp. 405–24, doi:10.1007/s00220-012-1436-9.","ista":"Frank R, Lieb É, Seiringer R. 2012. Binding of polarons and atoms at threshold. Communications in Mathematical Physics. 313(2), 405–424.","chicago":"Frank, Rupert, Élliott Lieb, and Robert Seiringer. “Binding of Polarons and Atoms at Threshold.” Communications in Mathematical Physics. Springer, 2012. https://doi.org/10.1007/s00220-012-1436-9."},"date_updated":"2021-01-12T06:57:15Z","extern":1,"author":[{"first_name":"Rupert","last_name":"Frank","full_name":"Frank, Rupert L"},{"first_name":"Élliott","full_name":"Lieb, Élliott H","last_name":"Lieb"},{"first_name":"Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","full_name":"Robert Seiringer","orcid":"0000-0002-6781-0521","last_name":"Seiringer"}],"publist_id":"4527","title":"Binding of polarons and atoms at threshold","abstract":[{"text":"If the polaron coupling constant α is large enough, bipolarons or multi-polarons will form. When passing through the critical α c from above, does the radius of the system simply get arbitrarily large or does it reach a maximum and then explode? We prove that it is always the latter. We also prove the analogous statement for the Pekar-Tomasevich (PT) approximation to the energy, in which case there is a solution to the PT equation at α c. Similarly, we show that the same phenomenon occurs for atoms, e. g., helium, at the critical value of the nuclear charge. Our proofs rely only on energy estimates, not on a detailed analysis of the Schrödinger equation, and are very general. They use the fact that the Coulomb repulsion decays like 1/r, while 'uncertainty principle' localization energies decay more rapidly, as 1/r 2.","lang":"eng"}],"quality_controlled":0,"publisher":"Springer","oa":1,"main_file_link":[{"url":"http://arxiv.org/abs/1106.0729","open_access":"1"}],"month":"07","intvolume":" 313","year":"2012","publication_status":"published","day":"01","publication":"Communications in Mathematical Physics","page":"405 - 424","doi":"10.1007/s00220-012-1436-9","volume":313,"issue":"2","date_published":"2012-07-01T00:00:00Z","date_created":"2018-12-11T11:57:27Z"},{"_id":"2403","status":"public","type":"journal_article","extern":1,"citation":{"chicago":"Seiringer, Robert, Jakob Yngvason, and Valentin Zagrebnov. “Disordered Bose-Einstein Condensates with Interaction in One Dimension.” Journal of Statistical Mechanics Theory and Experiment. IOP Publishing Ltd., 2012. https://doi.org/10.1088/1742-5468/2012/11/P11007.","ista":"Seiringer R, Yngvason J, Zagrebnov V. 2012. Disordered Bose-Einstein condensates with interaction in one dimension. Journal of Statistical Mechanics Theory and Experiment. 2012(11).","mla":"Seiringer, Robert, et al. “Disordered Bose-Einstein Condensates with Interaction in One Dimension.” Journal of Statistical Mechanics Theory and Experiment, vol. 2012, no. 11, IOP Publishing Ltd., 2012, doi:10.1088/1742-5468/2012/11/P11007.","short":"R. Seiringer, J. Yngvason, V. Zagrebnov, Journal of Statistical Mechanics Theory and Experiment 2012 (2012).","ieee":"R. Seiringer, J. Yngvason, and V. Zagrebnov, “Disordered Bose-Einstein condensates with interaction in one dimension,” Journal of Statistical Mechanics Theory and Experiment, vol. 2012, no. 11. IOP Publishing Ltd., 2012.","ama":"Seiringer R, Yngvason J, Zagrebnov V. Disordered Bose-Einstein condensates with interaction in one dimension. Journal of Statistical Mechanics Theory and Experiment. 2012;2012(11). doi:10.1088/1742-5468/2012/11/P11007","apa":"Seiringer, R., Yngvason, J., & Zagrebnov, V. (2012). Disordered Bose-Einstein condensates with interaction in one dimension. Journal of Statistical Mechanics Theory and Experiment. IOP Publishing Ltd. https://doi.org/10.1088/1742-5468/2012/11/P11007"},"date_updated":"2021-01-12T06:57:16Z","title":"Disordered Bose-Einstein condensates with interaction in one dimension","publist_id":"4523","author":[{"first_name":"Robert","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","full_name":"Robert Seiringer","orcid":"0000-0002-6781-0521","last_name":"Seiringer"},{"full_name":"Yngvason, Jakob","last_name":"Yngvason","first_name":"Jakob"},{"first_name":"Valentin","last_name":"Zagrebnov","full_name":"Zagrebnov, Valentin A"}],"abstract":[{"lang":"eng","text":"We study the effects of random scatterers on the ground state of the one-dimensional Lieb-Liniger model of interacting bosons on the unit interval in the Gross-Pitaevskii regime. We prove that Bose-Einstein condensation survives even a strong random potential with a high density of scatterers. The character of the wavefunction of the condensate, however, depends in an essential way on the interplay between randomness and the strength of the two-body interaction. For low density of scatterers and strong interactions the wavefunction extends over the whole interval. A high density of scatterers and weak interactions, on the other hand, lead to localization of the wavefunction in a fragmented subset of the interval."}],"month":"11","intvolume":" 2012","quality_controlled":0,"publisher":"IOP Publishing Ltd.","oa":1,"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1207.7054"}],"day":"01","publication":"Journal of Statistical Mechanics Theory and Experiment","year":"2012","publication_status":"published","date_published":"2012-11-01T00:00:00Z","volume":2012,"issue":"11","doi":"10.1088/1742-5468/2012/11/P11007","date_created":"2018-12-11T11:57:28Z"},{"_id":"2402","type":"journal_article","status":"public","citation":{"chicago":"Frank, Rupert, and Robert Seiringer. “Lieb-Thirring Inequality for a Model of Particles with Point Interactions.” Journal of Mathematical Physics. American Institute of Physics, 2012. https://doi.org/10.1063/1.3697416.","ista":"Frank R, Seiringer R. 2012. Lieb-Thirring inequality for a model of particles with point interactions. Journal of Mathematical Physics. 53(9).","mla":"Frank, Rupert, and Robert Seiringer. “Lieb-Thirring Inequality for a Model of Particles with Point Interactions.” Journal of Mathematical Physics, vol. 53, no. 9, American Institute of Physics, 2012, doi:10.1063/1.3697416.","ama":"Frank R, Seiringer R. Lieb-Thirring inequality for a model of particles with point interactions. Journal of Mathematical Physics. 2012;53(9). doi:10.1063/1.3697416","apa":"Frank, R., & Seiringer, R. (2012). Lieb-Thirring inequality for a model of particles with point interactions. Journal of Mathematical Physics. American Institute of Physics. https://doi.org/10.1063/1.3697416","ieee":"R. Frank and R. Seiringer, “Lieb-Thirring inequality for a model of particles with point interactions,” Journal of Mathematical Physics, vol. 53, no. 9. American Institute of Physics, 2012.","short":"R. Frank, R. Seiringer, Journal of Mathematical Physics 53 (2012)."},"date_updated":"2021-01-12T06:57:16Z","extern":1,"publist_id":"4524","author":[{"last_name":"Frank","full_name":"Frank, Rupert L","first_name":"Rupert"},{"id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","first_name":"Robert","last_name":"Seiringer","orcid":"0000-0002-6781-0521","full_name":"Robert Seiringer"}],"title":"Lieb-Thirring inequality for a model of particles with point interactions","abstract":[{"text":"We consider a model of quantum-mechanical particles interacting via point interactions of infinite scattering length. In the case of fermions we prove a Lieb-Thirring inequality for the energy, i.e., we show that the energy is bounded from below by a constant times the integral of the particle density to the power.","lang":"eng"}],"publisher":"American Institute of Physics","quality_controlled":0,"oa":1,"main_file_link":[{"url":"http://arxiv.org/abs/1112.5617","open_access":"1"}],"month":"09","intvolume":" 53","publication_status":"published","year":"2012","day":"28","publication":"Journal of Mathematical Physics","doi":"10.1063/1.3697416","issue":"9","volume":53,"date_published":"2012-09-28T00:00:00Z","date_created":"2018-12-11T11:57:27Z"},{"issue":"1","doi":"10.1007/s10955-012-0585-8","date_published":"2012-10-01T00:00:00Z","volume":149,"date_created":"2018-12-11T11:57:27Z","page":"86 - 91","day":"01","publication":"Journal of Statistical Physics","publication_status":"published","year":"2012","month":"10","intvolume":" 149","publisher":"Springer","quality_controlled":0,"oa":1,"main_file_link":[{"url":"http://arxiv.org/abs/1206.0460","open_access":"1"}],"abstract":[{"lang":"eng","text":"We find further implications of the BMV conjecture, which states that for hermitian matrices B≥0 and A, the function λ {mapping} Tr exp(A - λB) is the Laplace transform of a positive measure supported on [0,∞]."}],"title":"Further implications of the Bessis-Moussa-Villani conjecture","publist_id":"4525","author":[{"first_name":"Élliott","full_name":"Lieb, Élliott H","last_name":"Lieb"},{"last_name":"Seiringer","orcid":"0000-0002-6781-0521","full_name":"Robert Seiringer","id":"4AFD0470-F248-11E8-B48F-1D18A9856A87","first_name":"Robert"}],"extern":1,"date_updated":"2021-01-12T06:57:16Z","citation":{"short":"É. Lieb, R. Seiringer, Journal of Statistical Physics 149 (2012) 86–91.","ieee":"É. Lieb and R. Seiringer, “Further implications of the Bessis-Moussa-Villani conjecture,” Journal of Statistical Physics, vol. 149, no. 1. Springer, pp. 86–91, 2012.","apa":"Lieb, É., & Seiringer, R. (2012). Further implications of the Bessis-Moussa-Villani conjecture. Journal of Statistical Physics. Springer. https://doi.org/10.1007/s10955-012-0585-8","ama":"Lieb É, Seiringer R. Further implications of the Bessis-Moussa-Villani conjecture. Journal of Statistical Physics. 2012;149(1):86-91. doi:10.1007/s10955-012-0585-8","mla":"Lieb, Élliott, and Robert Seiringer. “Further Implications of the Bessis-Moussa-Villani Conjecture.” Journal of Statistical Physics, vol. 149, no. 1, Springer, 2012, pp. 86–91, doi:10.1007/s10955-012-0585-8.","ista":"Lieb É, Seiringer R. 2012. Further implications of the Bessis-Moussa-Villani conjecture. Journal of Statistical Physics. 149(1), 86–91.","chicago":"Lieb, Élliott, and Robert Seiringer. “Further Implications of the Bessis-Moussa-Villani Conjecture.” Journal of Statistical Physics. Springer, 2012. https://doi.org/10.1007/s10955-012-0585-8."},"status":"public","type":"journal_article","_id":"2401"},{"file_date_updated":"2020-07-14T12:45:40Z","department":[{"_id":"JoBo"}],"date_updated":"2021-01-12T06:57:19Z","ddc":["570","576"],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","short":"CC BY-NC (4.0)"},"type":"journal_article","pubrep_id":"384","status":"public","_id":"2411","issue":"5","volume":29,"publication_status":"published","language":[{"iso":"eng"}],"file":[{"file_name":"IST-2015-384-v1+1_Mol_Biol_Evol-2012-Ebersberger-1319-34.pdf","date_created":"2018-12-12T10:13:30Z","file_size":754922,"date_updated":"2020-07-14T12:45:40Z","creator":"system","checksum":"d565dcac27d1736c0c378ea6fcf22d69","file_id":"5013","content_type":"application/pdf","relation":"main_file","access_level":"open_access"}],"scopus_import":1,"intvolume":" 29","month":"05","abstract":[{"lang":"eng","text":"The kingdom of fungi provides model organisms for biotechnology, cell biology, genetics, and life sciences in general. Only when their phylogenetic relationships are stably resolved, can individual results from fungal research be integrated into a holistic picture of biology. However, and despite recent progress, many deep relationships within the fungi remain unclear. Here, we present the first phylogenomic study of an entire eukaryotic kingdom that uses a consistency criterion to strengthen phylogenetic conclusions. We reason that branches (splits) recovered with independent data and different tree reconstruction methods are likely to reflect true evolutionary relationships. Two complementary phylogenomic data sets based on 99 fungal genomes and 109 fungal expressed sequence tag (EST) sets analyzed with four different tree reconstruction methods shed light from different angles on the fungal tree of life. Eleven additional data sets address specifically the phylogenetic position of Blastocladiomycota, Ustilaginomycotina, and Dothideomycetes, respectively. The combined evidence from the resulting trees supports the deep-level stability of the fungal groups toward a comprehensive natural system of the fungi. In addition, our analysis reveals methodologically interesting aspects. Enrichment for EST encoded data-a common practice in phylogenomic analyses-introduces a strong bias toward slowly evolving and functionally correlated genes. Consequently, the generalization of phylogenomic data sets as collections of randomly selected genes cannot be taken for granted. A thorough characterization of the data to assess possible influences on the tree reconstruction should therefore become a standard in phylogenomic analyses."}],"oa_version":"Published Version","author":[{"full_name":"Ebersberger, Ingo","last_name":"Ebersberger","first_name":"Ingo"},{"full_name":"De Matos Simoes, Ricardo","last_name":"De Matos Simoes","first_name":"Ricardo"},{"first_name":"Anne","id":"2BB22BC2-F248-11E8-B48F-1D18A9856A87","full_name":"Kupczok, Anne","last_name":"Kupczok"},{"full_name":"Gube, Matthias","last_name":"Gube","first_name":"Matthias"},{"first_name":"Erika","last_name":"Kothe","full_name":"Kothe, Erika"},{"first_name":"Kerstin","last_name":"Voigt","full_name":"Voigt, Kerstin"},{"first_name":"Arndt","last_name":"Von Haeseler","full_name":"Von Haeseler, Arndt"}],"publist_id":"4515","title":"A consistent phylogenetic backbone for the fungi","citation":{"ieee":"I. Ebersberger et al., “A consistent phylogenetic backbone for the fungi,” Molecular Biology and Evolution, vol. 29, no. 5. Oxford University Press, pp. 1319–1334, 2012.","short":"I. Ebersberger, R. De Matos Simoes, A. Kupczok, M. Gube, E. Kothe, K. Voigt, A. Von Haeseler, Molecular Biology and Evolution 29 (2012) 1319–1334.","ama":"Ebersberger I, De Matos Simoes R, Kupczok A, et al. A consistent phylogenetic backbone for the fungi. Molecular Biology and Evolution. 2012;29(5):1319-1334. doi:10.1093/molbev/msr285","apa":"Ebersberger, I., De Matos Simoes, R., Kupczok, A., Gube, M., Kothe, E., Voigt, K., & Von Haeseler, A. (2012). A consistent phylogenetic backbone for the fungi. Molecular Biology and Evolution. Oxford University Press. https://doi.org/10.1093/molbev/msr285","mla":"Ebersberger, Ingo, et al. “A Consistent Phylogenetic Backbone for the Fungi.” Molecular Biology and Evolution, vol. 29, no. 5, Oxford University Press, 2012, pp. 1319–34, doi:10.1093/molbev/msr285.","ista":"Ebersberger I, De Matos Simoes R, Kupczok A, Gube M, Kothe E, Voigt K, Von Haeseler A. 2012. A consistent phylogenetic backbone for the fungi. Molecular Biology and Evolution. 29(5), 1319–1334.","chicago":"Ebersberger, Ingo, Ricardo De Matos Simoes, Anne Kupczok, Matthias Gube, Erika Kothe, Kerstin Voigt, and Arndt Von Haeseler. “A Consistent Phylogenetic Backbone for the Fungi.” Molecular Biology and Evolution. Oxford University Press, 2012. https://doi.org/10.1093/molbev/msr285."},"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","page":"1319 - 1334","date_created":"2018-12-11T11:57:30Z","date_published":"2012-05-01T00:00:00Z","doi":"10.1093/molbev/msr285","year":"2012","has_accepted_license":"1","publication":"Molecular Biology and Evolution","day":"01","oa":1,"quality_controlled":"1","publisher":"Oxford University Press"},{"date_created":"2018-12-11T11:45:23Z","doi":"10.1007/s11856-012-0019-y","volume":191,"issue":"2","date_published":"2012-02-28T00:00:00Z","page":"973 - 1012","publication":"Israel Journal of Mathematics","day":"28","publication_status":"published","year":"2012","intvolume":" 191","month":"02","publisher":"Springer","quality_controlled":0,"abstract":[{"lang":"eng","text":"The representation of integral binary forms as sums of two squares is discussed and applied to establish the Manin conjecture for certain Châtelet surfaces over ℚ."}],"title":"Binary forms as sums of two squares and Châtelet surfaces","publist_id":"7663","author":[{"first_name":"Régis","full_name":"de la Bretèche, Régis","last_name":"De La Bretèche"},{"orcid":"0000-0002-8314-0177","full_name":"Timothy Browning","last_name":"Browning","first_name":"Timothy D","id":"35827D50-F248-11E8-B48F-1D18A9856A87"}],"extern":1,"citation":{"chicago":"De La Bretèche, Régis, and Timothy D Browning. “Binary Forms as Sums of Two Squares and Châtelet Surfaces.” Israel Journal of Mathematics. Springer, 2012. https://doi.org/10.1007/s11856-012-0019-y.","ista":"De La Bretèche R, Browning TD. 2012. Binary forms as sums of two squares and Châtelet surfaces. Israel Journal of Mathematics. 191(2), 973–1012.","mla":"De La Bretèche, Régis, and Timothy D. Browning. “Binary Forms as Sums of Two Squares and Châtelet Surfaces.” Israel Journal of Mathematics, vol. 191, no. 2, Springer, 2012, pp. 973–1012, doi:10.1007/s11856-012-0019-y.","apa":"De La Bretèche, R., & Browning, T. D. (2012). Binary forms as sums of two squares and Châtelet surfaces. Israel Journal of Mathematics. Springer. https://doi.org/10.1007/s11856-012-0019-y","ama":"De La Bretèche R, Browning TD. Binary forms as sums of two squares and Châtelet surfaces. Israel Journal of Mathematics. 2012;191(2):973-1012. doi:10.1007/s11856-012-0019-y","short":"R. De La Bretèche, T.D. Browning, Israel Journal of Mathematics 191 (2012) 973–1012.","ieee":"R. De La Bretèche and T. D. Browning, “Binary forms as sums of two squares and Châtelet surfaces,” Israel Journal of Mathematics, vol. 191, no. 2. Springer, pp. 973–1012, 2012."},"date_updated":"2021-01-12T06:57:19Z","status":"public","type":"journal_article","_id":"241"},{"month":"10","intvolume":" 55","publisher":"Cambridge University Press","quality_controlled":0,"oa":1,"main_file_link":[{"url":"https://arxiv.org/abs/1101.5464","open_access":"1"}],"acknowledgement":"EP/E053262/1\tEngineering and Physical Sciences Research Council","abstract":[{"text":"We investigate the first and second moments of shifted convolutions of the generalized divisor function d 3(n).","lang":"eng"}],"issue":"3","doi":"10.1017/S001309151100037X","date_published":"2012-10-01T00:00:00Z","volume":55,"date_created":"2018-12-11T11:45:23Z","page":"551 - 576","day":"01","publication":"Proceedings of the Edinburgh Mathematical Society","publication_status":"published","year":"2012","status":"public","type":"journal_article","_id":"242","title":"Averages of shifted convolutions of d3 (n)","publist_id":"7662","author":[{"first_name":"Stephan","full_name":"Baier, Stephan","last_name":"Baier"},{"id":"35827D50-F248-11E8-B48F-1D18A9856A87","first_name":"Timothy D","last_name":"Browning","full_name":"Timothy Browning","orcid":"0000-0002-8314-0177"},{"last_name":"Marasingha","full_name":"Marasingha, Gihan","first_name":"Gihan"},{"first_name":"Liangyi","last_name":"Zhao","full_name":"Zhao, Liangyi"}],"extern":1,"citation":{"mla":"Baier, Stephan, et al. “Averages of Shifted Convolutions of D3 (N).” Proceedings of the Edinburgh Mathematical Society, vol. 55, no. 3, Cambridge University Press, 2012, pp. 551–76, doi:10.1017/S001309151100037X.","short":"S. Baier, T.D. Browning, G. Marasingha, L. Zhao, Proceedings of the Edinburgh Mathematical Society 55 (2012) 551–576.","ieee":"S. Baier, T. D. Browning, G. Marasingha, and L. Zhao, “Averages of shifted convolutions of d3 (n),” Proceedings of the Edinburgh Mathematical Society, vol. 55, no. 3. Cambridge University Press, pp. 551–576, 2012.","ama":"Baier S, Browning TD, Marasingha G, Zhao L. Averages of shifted convolutions of d3 (n). Proceedings of the Edinburgh Mathematical Society. 2012;55(3):551-576. doi:10.1017/S001309151100037X","apa":"Baier, S., Browning, T. D., Marasingha, G., & Zhao, L. (2012). Averages of shifted convolutions of d3 (n). Proceedings of the Edinburgh Mathematical Society. Cambridge University Press. https://doi.org/10.1017/S001309151100037X","chicago":"Baier, Stephan, Timothy D Browning, Gihan Marasingha, and Liangyi Zhao. “Averages of Shifted Convolutions of D3 (N).” Proceedings of the Edinburgh Mathematical Society. Cambridge University Press, 2012. https://doi.org/10.1017/S001309151100037X.","ista":"Baier S, Browning TD, Marasingha G, Zhao L. 2012. Averages of shifted convolutions of d3 (n). Proceedings of the Edinburgh Mathematical Society. 55(3), 551–576."},"date_updated":"2021-01-12T06:57:23Z"},{"author":[{"orcid":"0000-0002-8314-0177","full_name":"Timothy Browning","last_name":"Browning","id":"35827D50-F248-11E8-B48F-1D18A9856A87","first_name":"Timothy D"},{"first_name":"Roger","full_name":"Heath-Brown, Roger","last_name":"Heath Brown"}],"publist_id":"7661","title":"Quadratic polynomials represented by norm forms","date_updated":"2021-01-12T06:57:26Z","citation":{"apa":"Browning, T. D., & Heath Brown, R. (2012). Quadratic polynomials represented by norm forms. Geometric and Functional Analysis. Springer Basel. https://doi.org/10.1007/s00039-012-0168-5","ama":"Browning TD, Heath Brown R. Quadratic polynomials represented by norm forms. Geometric and Functional Analysis. 2012;22(5):1124-1190. doi:10.1007/s00039-012-0168-5","ieee":"T. D. Browning and R. Heath Brown, “Quadratic polynomials represented by norm forms,” Geometric and Functional Analysis, vol. 22, no. 5. Springer Basel, pp. 1124–1190, 2012.","short":"T.D. Browning, R. Heath Brown, Geometric and Functional Analysis 22 (2012) 1124–1190.","mla":"Browning, Timothy D., and Roger Heath Brown. “Quadratic Polynomials Represented by Norm Forms.” Geometric and Functional Analysis, vol. 22, no. 5, Springer Basel, 2012, pp. 1124–90, doi:10.1007/s00039-012-0168-5.","ista":"Browning TD, Heath Brown R. 2012. Quadratic polynomials represented by norm forms. Geometric and Functional Analysis. 22(5), 1124–1190.","chicago":"Browning, Timothy D, and Roger Heath Brown. “Quadratic Polynomials Represented by Norm Forms.” Geometric and Functional Analysis. Springer Basel, 2012. https://doi.org/10.1007/s00039-012-0168-5."},"extern":1,"type":"journal_article","status":"public","_id":"243","page":"1124 - 1190","issue":"5","date_published":"2012-08-25T00:00:00Z","doi":"10.1007/s00039-012-0168-5","volume":22,"date_created":"2018-12-11T11:45:24Z","year":"2012","publication_status":"published","day":"25","publication":"Geometric and Functional Analysis","publisher":"Springer Basel","quality_controlled":0,"month":"08","intvolume":" 22","abstract":[{"text":"Let P(t) ∈ ℚ[t] be an irreducible quadratic polynomial and suppose that K is a quartic extension of ℚ containing the roots of P(t). Let N K/ℚ(X) be a full norm form for the extension K/ℚ. We show that the variety P(t) =N K/ℚ(X)≠ 0 satisfies the Hasse principle and weak approximation. The proof uses analytic methods.","lang":"eng"}]},{"_id":"2440","status":"public","conference":{"name":"SODA: Symposium on Discrete Algorithms"},"type":"conference","extern":1,"date_updated":"2021-01-12T06:57:30Z","citation":{"chicago":"Čadek, Martin, Marek Krcál, Jiří Matoušek, Francis Sergeraert, Lukáš Vokřínek, and Uli Wagner. “Computing All Maps into a Sphere,” 1–10. SIAM, 2012.","ista":"Čadek M, Krcál M, Matoušek J, Sergeraert F, Vokřínek L, Wagner U. 2012. Computing all maps into a sphere. SODA: Symposium on Discrete Algorithms, 1–10.","mla":"Čadek, Martin, et al. Computing All Maps into a Sphere. SIAM, 2012, pp. 1–10.","ama":"Čadek M, Krcál M, Matoušek J, Sergeraert F, Vokřínek L, Wagner U. Computing all maps into a sphere. In: SIAM; 2012:1-10.","apa":"Čadek, M., Krcál, M., Matoušek, J., Sergeraert, F., Vokřínek, L., & Wagner, U. (2012). Computing all maps into a sphere (pp. 1–10). Presented at the SODA: Symposium on Discrete Algorithms, SIAM.","ieee":"M. Čadek, M. Krcál, J. Matoušek, F. Sergeraert, L. Vokřínek, and U. Wagner, “Computing all maps into a sphere,” presented at the SODA: Symposium on Discrete Algorithms, 2012, pp. 1–10.","short":"M. Čadek, M. Krcál, J. Matoušek, F. Sergeraert, L. Vokřínek, U. Wagner, in:, SIAM, 2012, pp. 1–10."},"title":"Computing all maps into a sphere","author":[{"first_name":"Martin","last_name":"Čadek","full_name":"Čadek, Martin"},{"full_name":"Marek Krcál","last_name":"Krcál","id":"33E21118-F248-11E8-B48F-1D18A9856A87","first_name":"Marek"},{"first_name":"Jiří","last_name":"Matoušek","full_name":"Matoušek, Jiří"},{"first_name":"Francis","full_name":"Sergeraert, Francis","last_name":"Sergeraert"},{"first_name":"Lukáš","full_name":"Vokřínek, Lukáš","last_name":"Vokřínek"},{"first_name":"Uli","id":"36690CA2-F248-11E8-B48F-1D18A9856A87","full_name":"Uli Wagner","orcid":"0000-0002-1494-0568","last_name":"Wagner"}],"publist_id":"4466","abstract":[{"text":"We present an algorithm for computing [X, Y], i.e., all homotopy classes of continuous maps X → Y, where X, Y are topological spaces given as finite simplicial complexes, Y is (d - 1)-connected for some d ≥ 2 (for example, Y can be the d-dimensional sphere S d), and dim X ≤ 2d - 2. These conditions on X, Y guarantee that [X, Y] has a natural structure of a finitely generated Abelian group, and the algorithm finds generators and relations for it. We combine several tools and ideas from homotopy theory (such as Postnikov systems, simplicial sets, and obstruction theory) with algorithmic tools from effective algebraic topology (objects with effective homology). We hope that a further extension of the methods developed here will yield an algorithm for computing, in some cases of interest, the ℤ 2-index, which is a quantity playing a prominent role in Borsuk-Ulam style applications of topology in combinatorics and geometry, e.g., in topological lower bounds for the chromatic number of a graph. In a certain range of dimensions, deciding the embeddability of a simplicial complex into ℝ d also amounts to a ℤ 2-index computation. This is the main motivation of our work. We believe that investigating the computational complexity of questions in homotopy theory and similar areas presents a fascinating research area, and we hope that our work may help bridge the cultural gap between algebraic topology and theoretical computer science.","lang":"eng"}],"month":"01","main_file_link":[{"url":"http://arxiv.org/abs/1105.6257","open_access":"0"}],"quality_controlled":0,"publisher":"SIAM","day":"01","year":"2012","publication_status":"published","date_created":"2018-12-11T11:57:40Z","date_published":"2012-01-01T00:00:00Z","page":"1 - 10"},{"publisher":"Springer","quality_controlled":0,"month":"03","intvolume":" 47","abstract":[{"lang":"eng","text":"The colored Tverberg theorem asserts that for eve;ry d and r there exists t=t(d,r) such that for every set C ⊂ ℝ d of cardinality (d + 1)t, partitioned into t-point subsets C 1, C 2,...,C d+1 (which we think of as color classes; e. g., the points of C 1 are red, the points of C 2 blue, etc.), there exist r disjoint sets R 1, R 2,...,R r⊆C that are rainbow, meaning that {pipe}R i∩C j{pipe}≤1 for every i,j, and whose convex hulls all have a common point. All known proofs of this theorem are topological. We present a geometric version of a recent beautiful proof by Blagojević, Matschke, and Ziegler, avoiding a direct use of topological methods. The purpose of this de-topologization is to make the proof more concrete and intuitive, and accessible to a wider audience."}],"acknowledgement":"We would like to thank Marek Krcál for useful discussions at initial stages of this research. We also thank Günter M. Ziegler for valuable comments, and Peter Landweber and two anonymous referees for detailed comments and corrections that greatly helped to improve the presentation. In particular, we are indebted to one of the referees for pointing out to us reference [19]. M. Tancer is supported by the grants SVV-2010-261313 (Discrete Methods and Algorithms) and GAUK 49209. U. Wagner’s research is supported by the Swiss National Science Foundation (SNF Projects 200021- 125309 and 200020-125027). ","page":"245 - 265","volume":47,"issue":"2","date_published":"2012-03-01T00:00:00Z","doi":"10.1007/s00454-011-9368-2","date_created":"2018-12-11T11:57:39Z","year":"2012","publication_status":"published","day":"01","publication":"Discrete & Computational Geometry","type":"journal_article","status":"public","_id":"2438","publist_id":"4468","author":[{"last_name":"Matoušek","full_name":"Matoušek, Jiří","first_name":"Jiří"},{"last_name":"Tancer","orcid":"0000-0002-1191-6714","full_name":"Martin Tancer","first_name":"Martin","id":"38AC689C-F248-11E8-B48F-1D18A9856A87"},{"id":"36690CA2-F248-11E8-B48F-1D18A9856A87","first_name":"Uli","orcid":"0000-0002-1494-0568","full_name":"Uli Wagner","last_name":"Wagner"}],"title":"A geometric proof of the colored Tverberg theorem","citation":{"ista":"Matoušek J, Tancer M, Wagner U. 2012. A geometric proof of the colored Tverberg theorem. Discrete & Computational Geometry. 47(2), 245–265.","chicago":"Matoušek, Jiří, Martin Tancer, and Uli Wagner. “A Geometric Proof of the Colored Tverberg Theorem.” Discrete & Computational Geometry. Springer, 2012. https://doi.org/10.1007/s00454-011-9368-2.","apa":"Matoušek, J., Tancer, M., & Wagner, U. (2012). A geometric proof of the colored Tverberg theorem. Discrete & Computational Geometry. Springer. https://doi.org/10.1007/s00454-011-9368-2","ama":"Matoušek J, Tancer M, Wagner U. A geometric proof of the colored Tverberg theorem. Discrete & Computational Geometry. 2012;47(2):245-265. doi:10.1007/s00454-011-9368-2","ieee":"J. Matoušek, M. Tancer, and U. Wagner, “A geometric proof of the colored Tverberg theorem,” Discrete & Computational Geometry, vol. 47, no. 2. Springer, pp. 245–265, 2012.","short":"J. Matoušek, M. Tancer, U. Wagner, Discrete & Computational Geometry 47 (2012) 245–265.","mla":"Matoušek, Jiří, et al. “A Geometric Proof of the Colored Tverberg Theorem.” Discrete & Computational Geometry, vol. 47, no. 2, Springer, 2012, pp. 245–65, doi:10.1007/s00454-011-9368-2."},"date_updated":"2021-01-12T06:57:29Z","extern":1},{"type":"journal_article","status":"public","_id":"244","author":[{"first_name":"Timothy D","id":"35827D50-F248-11E8-B48F-1D18A9856A87","last_name":"Browning","full_name":"Timothy Browning","orcid":"0000-0002-8314-0177"},{"full_name":"Haynes, Alan K","last_name":"Haynes","first_name":"Alan"}],"publist_id":"7660","title":"Incomplete kloosterman sums and multiplicative inverses in short intervals","date_updated":"2021-01-12T06:57:30Z","citation":{"apa":"Browning, T. D., & Haynes, A. (2012). Incomplete kloosterman sums and multiplicative inverses in short intervals. International Journal of Number Theory. World Scientific Publishing. https://doi.org/ https://doi.org/10.1142/S1793042112501448","ama":"Browning TD, Haynes A. Incomplete kloosterman sums and multiplicative inverses in short intervals. International Journal of Number Theory. 2012;9(2):481-486. doi: https://doi.org/10.1142/S1793042112501448","short":"T.D. Browning, A. Haynes, International Journal of Number Theory 9 (2012) 481–486.","ieee":"T. D. Browning and A. Haynes, “Incomplete kloosterman sums and multiplicative inverses in short intervals,” International Journal of Number Theory, vol. 9, no. 2. World Scientific Publishing, pp. 481–486, 2012.","mla":"Browning, Timothy D., and Alan Haynes. “Incomplete Kloosterman Sums and Multiplicative Inverses in Short Intervals.” International Journal of Number Theory, vol. 9, no. 2, World Scientific Publishing, 2012, pp. 481–86, doi: https://doi.org/10.1142/S1793042112501448.","ista":"Browning TD, Haynes A. 2012. Incomplete kloosterman sums and multiplicative inverses in short intervals. International Journal of Number Theory. 9(2), 481–486.","chicago":"Browning, Timothy D, and Alan Haynes. “Incomplete Kloosterman Sums and Multiplicative Inverses in Short Intervals.” International Journal of Number Theory. World Scientific Publishing, 2012. https://doi.org/ https://doi.org/10.1142/S1793042112501448."},"extern":1,"publisher":"World Scientific Publishing","quality_controlled":0,"main_file_link":[{"open_access":"1","url":"https://arxiv.org/abs/1204.6374"}],"oa":1,"month":"11","intvolume":" 9","abstract":[{"lang":"eng","text":"We investigate the solubility of the congruence xy ≡ 1 (mod p), where p is a prime and x, y are restricted to lie in suitable short intervals. Our work relies on a mean value theorem for incomplete Kloosterman sums."}],"acknowledgement":"EP/E053262/1\tEngineering and Physical Sciences Research Council\tEPSRC,\nEP/J00149X/1\tEngineering and Physical Sciences Research Council\tEPSRC\t","page":"481 - 486","volume":9,"issue":"2","doi":" https://doi.org/10.1142/S1793042112501448","date_published":"2012-11-30T00:00:00Z","date_created":"2018-12-11T11:45:24Z","year":"2012","publication_status":"published","day":"30","publication":"International Journal of Number Theory"},{"date_updated":"2021-01-12T06:57:29Z","citation":{"ista":"Chen D, Morin P, Wagner U. 2012. Absolute approximation of Tukey depth: Theory and experiments. Computational Geometry: Theory and Applications. 46(5), 566–573.","chicago":"Chen, Dan, Pat Morin, and Uli Wagner. “Absolute Approximation of Tukey Depth: Theory and Experiments.” Computational Geometry: Theory and Applications. Elsevier, 2012. https://doi.org/10.1016/j.comgeo.2012.03.001.","short":"D. Chen, P. Morin, U. Wagner, Computational Geometry: Theory and Applications 46 (2012) 566–573.","ieee":"D. Chen, P. Morin, and U. Wagner, “Absolute approximation of Tukey depth: Theory and experiments,” Computational Geometry: Theory and Applications, vol. 46, no. 5. Elsevier, pp. 566–573, 2012.","apa":"Chen, D., Morin, P., & Wagner, U. (2012). Absolute approximation of Tukey depth: Theory and experiments. Computational Geometry: Theory and Applications. Elsevier. https://doi.org/10.1016/j.comgeo.2012.03.001","ama":"Chen D, Morin P, Wagner U. Absolute approximation of Tukey depth: Theory and experiments. Computational Geometry: Theory and Applications. 2012;46(5):566-573. doi:10.1016/j.comgeo.2012.03.001","mla":"Chen, Dan, et al. “Absolute Approximation of Tukey Depth: Theory and Experiments.” Computational Geometry: Theory and Applications, vol. 46, no. 5, Elsevier, 2012, pp. 566–73, doi:10.1016/j.comgeo.2012.03.001."},"extern":1,"publist_id":"4467","author":[{"first_name":"Dan","full_name":"Chen, Dan","last_name":"Chen"},{"first_name":"Pat","full_name":"Morin, Pat","last_name":"Morin"},{"last_name":"Wagner","orcid":"0000-0002-1494-0568","full_name":"Uli Wagner","id":"36690CA2-F248-11E8-B48F-1D18A9856A87","first_name":"Uli"}],"title":"Absolute approximation of Tukey depth: Theory and experiments","_id":"2439","type":"journal_article","status":"public","publication_status":"published","year":"2012","publication":"Computational Geometry: Theory and Applications","day":"01","page":"566 - 573","date_created":"2018-12-11T11:57:40Z","volume":46,"issue":"5","doi":"10.1016/j.comgeo.2012.03.001","date_published":"2012-07-01T00:00:00Z","abstract":[{"lang":"eng","text":"A Monte Carlo approximation algorithm for the Tukey depth problem in high dimensions is introduced. The algorithm is a generalization of an algorithm presented by Rousseeuw and Struyf (1998) . The performance of this algorithm is studied both analytically and experimentally."}],"publisher":"Elsevier","quality_controlled":0,"intvolume":" 46","month":"07"},{"author":[{"first_name":"Anna","last_name":"Gundert","full_name":"Gundert, Anna"},{"first_name":"Uli","id":"36690CA2-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-1494-0568","full_name":"Uli Wagner","last_name":"Wagner"}],"publist_id":"4464","title":"On Laplacians of random complexes","citation":{"ista":"Gundert A, Wagner U. 2012. On Laplacians of random complexes. SGC: Symposuim on Computational Geometry, 151–160.","chicago":"Gundert, Anna, and Uli Wagner. “On Laplacians of Random Complexes,” 151–60. ACM, 2012. https://doi.org/10.1145/2261250.2261272.","short":"A. Gundert, U. Wagner, in:, ACM, 2012, pp. 151–160.","ieee":"A. Gundert and U. Wagner, “On Laplacians of random complexes,” presented at the SGC: Symposuim on Computational Geometry, 2012, pp. 151–160.","apa":"Gundert, A., & Wagner, U. (2012). On Laplacians of random complexes (pp. 151–160). Presented at the SGC: Symposuim on Computational Geometry, ACM. https://doi.org/10.1145/2261250.2261272","ama":"Gundert A, Wagner U. On Laplacians of random complexes. In: ACM; 2012:151-160. doi:10.1145/2261250.2261272","mla":"Gundert, Anna, and Uli Wagner. On Laplacians of Random Complexes. ACM, 2012, pp. 151–60, doi:10.1145/2261250.2261272."},"date_updated":"2021-01-12T06:57:30Z","extern":1,"type":"conference","conference":{"name":"SGC: Symposuim on Computational Geometry"},"status":"public","_id":"2441","page":"151 - 160","date_published":"2012-06-01T00:00:00Z","doi":"10.1145/2261250.2261272","date_created":"2018-12-11T11:57:41Z","year":"2012","publication_status":"published","day":"01","quality_controlled":0,"publisher":"ACM","month":"06","abstract":[{"lang":"eng","text":"Eigenvalues associated to graphs are a well-studied subject. In particular the spectra of the adjacency matrix and of the Laplacian of random graphs G(n, p) are known quite precisely. We consider generalizations of these matrices to simplicial complexes of higher dimensions and study their eigenvalues for the Linial-Meshulam model X k(n, p) of random k-dimensional simplicial complexes on n vertices. We show that for p = Ω(log n/n), the eigenvalues of both, the higher-dimensional adjacency matrix and the Laplacian, are a.a.s. sharply concentrated around two values. In a second part of the paper, we discuss a possible higherdimensional analogue of the Discrete Cheeger Inequality. This fundamental inequality expresses a close relationship between the eigenvalues of a graph and its combinatorial expansion properties; in particular, spectral expansion (a large eigenvalue gap) implies edge expansion. Recently, a higher-dimensional analogue of edge expansion for simplicial complexes was introduced by Gromov, and independently by Linial, Meshulam and Wallach and by Newman and Rabinovich. It is natural to ask whether there is a higher-dimensional version of Cheeger's inequality. We show that the most straightforward version of a higher-dimensional Cheeger inequality fails: for every k > 1, there is an infinite family of k-dimensional complexes that are spectrally expanding (there is a large eigenvalue gap for the Laplacian) but not combinatorially expanding."}]},{"type":"journal_article","status":"public","_id":"2453","publist_id":"4450","author":[{"last_name":"Feraru","full_name":"Feraru, Elena","first_name":"Elena"},{"first_name":"Mugurel","full_name":"Feraru, Mugurel Ioan","last_name":"Feraru"},{"full_name":"Asaoka, Rin","last_name":"Asaoka","first_name":"Rin"},{"full_name":"Paciorek, Tomasz","last_name":"Paciorek","first_name":"Tomasz"},{"first_name":"Riet","full_name":"De Rycke, Riet M","last_name":"De Rycke"},{"last_name":"Tanaka","full_name":"Tanaka, Hirokazu","first_name":"Hirokazu"},{"last_name":"Nakano","full_name":"Nakano, Akihiko","first_name":"Akihiko"},{"first_name":"Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","full_name":"Jirí Friml","orcid":"0000-0002-8302-7596"}],"title":"BEX5/RabA1b regulates trans-Golgi network-to-plasma membrane protein trafficking in Arabidopsis","date_updated":"2021-01-12T06:57:35Z","citation":{"ista":"Feraru E, Feraru M, Asaoka R, Paciorek T, De Rycke R, Tanaka H, Nakano A, Friml J. 2012. BEX5/RabA1b regulates trans-Golgi network-to-plasma membrane protein trafficking in Arabidopsis. Plant Cell. 24(7), 3074–3086.","chicago":"Feraru, Elena, Mugurel Feraru, Rin Asaoka, Tomasz Paciorek, Riet De Rycke, Hirokazu Tanaka, Akihiko Nakano, and Jiří Friml. “BEX5/RabA1b Regulates Trans-Golgi Network-to-Plasma Membrane Protein Trafficking in Arabidopsis.” Plant Cell. American Society of Plant Biologists, 2012. https://doi.org/10.1105/tpc.112.098152.","ieee":"E. Feraru et al., “BEX5/RabA1b regulates trans-Golgi network-to-plasma membrane protein trafficking in Arabidopsis,” Plant Cell, vol. 24, no. 7. American Society of Plant Biologists, pp. 3074–3086, 2012.","short":"E. Feraru, M. Feraru, R. Asaoka, T. Paciorek, R. De Rycke, H. Tanaka, A. Nakano, J. Friml, Plant Cell 24 (2012) 3074–3086.","apa":"Feraru, E., Feraru, M., Asaoka, R., Paciorek, T., De Rycke, R., Tanaka, H., … Friml, J. (2012). BEX5/RabA1b regulates trans-Golgi network-to-plasma membrane protein trafficking in Arabidopsis. Plant Cell. American Society of Plant Biologists. https://doi.org/10.1105/tpc.112.098152","ama":"Feraru E, Feraru M, Asaoka R, et al. BEX5/RabA1b regulates trans-Golgi network-to-plasma membrane protein trafficking in Arabidopsis. Plant Cell. 2012;24(7):3074-3086. doi:10.1105/tpc.112.098152","mla":"Feraru, Elena, et al. “BEX5/RabA1b Regulates Trans-Golgi Network-to-Plasma Membrane Protein Trafficking in Arabidopsis.” Plant Cell, vol. 24, no. 7, American Society of Plant Biologists, 2012, pp. 3074–86, doi:10.1105/tpc.112.098152."},"extern":1,"publisher":"American Society of Plant Biologists","quality_controlled":0,"intvolume":" 24","month":"07","abstract":[{"lang":"eng","text":"Constitutive endocytic recycling is a crucial mechanism allowing regulation of the activity of proteins at the plasma membrane and for rapid changes in their localization, as demonstrated in plants for PIN-FORMED (PIN) proteins, the auxin transporters. To identify novel molecular components of endocytic recycling, mainly exocytosis, we designed a PIN1-green fluorescent protein fluorescence imaging-based forward genetic screen for Arabidopsis thaliana mutants that showed increased intracellular accumulation of cargos in response to the trafficking inhibitor brefeldin A (BFA). We identified bex5 (for BFA-visualized exocytic trafficking defective), a novel dominant mutant carrying a missense mutation that disrupts a conserved sequence motif of the small GTPase, RAS GENES FROM RAT BRAINA1b. bex5 displays defects such as enhanced protein accumulation in abnormal BFA compartments, aberrant endosomes, and defective exocytosis and transcytosis. BEX5/RabA1b localizes to trans-Golgi network/early endosomes (TGN/EE) and acts on distinct trafficking processes like those regulated by GTP exchange factors on ADP-ribosylation factors GNOM-LIKE1 and HOPM INTERACTOR7/BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, which regulate trafficking at the Golgi apparatus and TGN/EE, respectively. All together, this study identifies Arabidopsis BEX5/RabA1b as a novel regulator of protein trafficking from a TGN/EE compartment to the plasma membrane."}],"page":"3074 - 3086","date_created":"2018-12-11T11:57:45Z","issue":"7","volume":24,"doi":"10.1105/tpc.112.098152","date_published":"2012-07-01T00:00:00Z","year":"2012","publication_status":"published","publication":"Plant Cell","day":"01"},{"_id":"2456","type":"journal_article","status":"public","date_updated":"2021-01-12T06:57:35Z","citation":{"ama":"Beeckman T, Friml J. Plant developmental biologists meet on stairways in Matera. Development. 2012;139(20):3677-3682. doi:10.1242/dev.080861","apa":"Beeckman, T., & Friml, J. (2012). Plant developmental biologists meet on stairways in Matera. Development. Company of Biologists. https://doi.org/10.1242/dev.080861","short":"T. Beeckman, J. Friml, Development 139 (2012) 3677–3682.","ieee":"T. Beeckman and J. Friml, “Plant developmental biologists meet on stairways in Matera,” Development, vol. 139, no. 20. Company of Biologists, pp. 3677–3682, 2012.","mla":"Beeckman, Tom, and Jiří Friml. “Plant Developmental Biologists Meet on Stairways in Matera.” Development, vol. 139, no. 20, Company of Biologists, 2012, pp. 3677–82, doi:10.1242/dev.080861.","ista":"Beeckman T, Friml J. 2012. Plant developmental biologists meet on stairways in Matera. Development. 139(20), 3677–3682.","chicago":"Beeckman, Tom, and Jiří Friml. “Plant Developmental Biologists Meet on Stairways in Matera.” Development. Company of Biologists, 2012. https://doi.org/10.1242/dev.080861."},"extern":"1","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","publist_id":"4447","author":[{"last_name":"Beeckman","full_name":"Beeckman, Tom","first_name":"Tom"},{"first_name":"Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","last_name":"Friml","orcid":"0000-0002-8302-7596","full_name":"Friml, Jirí"}],"title":"Plant developmental biologists meet on stairways in Matera","abstract":[{"text":"The third EMBO Conference on Plant Molecular Biology, which focused on ‘Plant development and environmental interactions’,was held in May 2012 in Matera, Italy. Here, we review some of the topics and themes that emerged from the various contributions; namely, steering technologies, transcriptional networks and hormonal regulation, small RNAs, cell and tissue polarity, environmental control and natural variation. We intend to provide the reader who might have missed this remarkable event with a glimpse of the recent progress made in this blossoming research field.","lang":"eng"}],"oa_version":"None","publisher":"Company of Biologists","quality_controlled":"1","month":"10","intvolume":" 139","year":"2012","publication_status":"published","day":"15","language":[{"iso":"eng"}],"publication":"Development","page":"3677 - 3682","doi":"10.1242/dev.080861","issue":"20","date_published":"2012-10-15T00:00:00Z","volume":139,"date_created":"2018-12-11T11:57:46Z"},{"title":"Fluorescence imaging-based forward genetic screens to identify trafficking regulators in plants","publist_id":"4444","author":[{"first_name":"Marta","full_name":"Zwiewka, Marta","last_name":"Zwiewka"},{"last_name":"Friml","orcid":"0000-0002-8302-7596","full_name":"Friml, Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87","first_name":"Jirí"}],"user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","citation":{"chicago":"Zwiewka, Marta, and Jiří Friml. “Fluorescence Imaging-Based Forward Genetic Screens to Identify Trafficking Regulators in Plants.” Frontiers in Plant Science. Frontiers Research Foundation, 2012. https://doi.org/10.3389/fpls.2012.00097.","ista":"Zwiewka M, Friml J. 2012. Fluorescence imaging-based forward genetic screens to identify trafficking regulators in plants. Frontiers in Plant Science. 3(May), 97.","mla":"Zwiewka, Marta, and Jiří Friml. “Fluorescence Imaging-Based Forward Genetic Screens to Identify Trafficking Regulators in Plants.” Frontiers in Plant Science, vol. 3, no. May, 97, Frontiers Research Foundation, 2012, doi:10.3389/fpls.2012.00097.","ama":"Zwiewka M, Friml J. Fluorescence imaging-based forward genetic screens to identify trafficking regulators in plants. Frontiers in Plant Science. 2012;3(May). doi:10.3389/fpls.2012.00097","apa":"Zwiewka, M., & Friml, J. (2012). Fluorescence imaging-based forward genetic screens to identify trafficking regulators in plants. Frontiers in Plant Science. Frontiers Research Foundation. https://doi.org/10.3389/fpls.2012.00097","ieee":"M. Zwiewka and J. Friml, “Fluorescence imaging-based forward genetic screens to identify trafficking regulators in plants,” Frontiers in Plant Science, vol. 3, no. May. Frontiers Research Foundation, 2012.","short":"M. Zwiewka, J. Friml, Frontiers in Plant Science 3 (2012)."},"article_number":"97","date_created":"2018-12-11T11:57:47Z","doi":"10.3389/fpls.2012.00097","date_published":"2012-05-24T00:00:00Z","publication":"Frontiers in Plant Science","day":"24","year":"2012","has_accepted_license":"1","oa":1,"publisher":"Frontiers Research Foundation","quality_controlled":"1","file_date_updated":"2020-07-14T12:45:41Z","ddc":["580"],"extern":"1","date_updated":"2021-01-12T06:57:36Z","status":"public","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","short":"CC BY-NC (4.0)"},"type":"journal_article","_id":"2459","issue":"May","volume":3,"language":[{"iso":"eng"}],"file":[{"checksum":"ab4e9487ccdb83a7a0a9ee6811521844","file_id":"6346","content_type":"application/pdf","relation":"main_file","access_level":"open_access","file_name":"2012_frontiers_Zwiewka.pdf","date_created":"2019-04-26T06:49:26Z","file_size":1468230,"date_updated":"2020-07-14T12:45:41Z","creator":"kschuh"}],"publication_status":"published","intvolume":" 3","month":"05","oa_version":"Published Version","abstract":[{"text":"Coordinated, subcellular trafficking of proteins is one of the fundamental properties of the multicellular eukaryotic organisms. Trafficking involves a large diversity of compartments, pathways, cargo molecules, and vesicle-sorting events. It is also crucial in regulating the localization and, thus, the activity of various proteins, but the process is still poorly genetically defined in plants. In the past, forward genetics screens had been used to determine the function of genes by searching for a specific morphological phenotype in the organism population in which mutations had been induced chemically or by irradiation. Unfortunately, these straightforward genetic screens turned out to be limited in identifying new regulators of intracellular protein transport, because mutations affecting essential trafficking pathways often lead to lethality. In addition, the use of these approaches has been restricted by functional redundancy among trafficking regulators. Screens for mutants that rely on the observation of changes in the cellular localization or dynamics of fluorescent subcellular markers enable, at least partially, to circumvent these issues. Hence, such image-based screens provide the possibility to identify either alleles with weak effects or components of the subcellular trafficking machinery that have no strong impact on the plant growth.","lang":"eng"}]},{"date_created":"2018-12-11T11:57:47Z","volume":22,"issue":"16","date_published":"2012-08-21T00:00:00Z","doi":"10.1016/j.cub.2012.06.053","page":"R635 - R637","publication":"Current Biology","language":[{"iso":"eng"}],"day":"21","publication_status":"published","year":"2012","intvolume":" 22","month":"08","quality_controlled":"1","publisher":"Cell Press","oa_version":"None","abstract":[{"text":"Initiation and successive development of organs induce mechanical stresses at the cellular level. Using the tomato shoot apex, a new study now proposes that mechanical strain regulates the plasma membrane abundance of the PIN1 auxin transporter, thereby reinforcing a positive feed-back loop between growth and auxin accumulation.","lang":"eng"}],"title":"Cell polarity: Stretching prevents developmental cramps","author":[{"last_name":"Li","orcid":"0000-0001-5039-9660","full_name":"Li, Hongjiang","id":"33CA54A6-F248-11E8-B48F-1D18A9856A87","first_name":"Hongjiang"},{"orcid":"0000-0002-8302-7596","full_name":"Friml, Jirí","last_name":"Friml","first_name":"Jirí","id":"4159519E-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Grunewald","full_name":"Grunewald, Wim","first_name":"Wim"}],"publist_id":"4445","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","extern":"1","citation":{"short":"H. Li, J. Friml, W. Grunewald, Current Biology 22 (2012) R635–R637.","ieee":"H. Li, J. Friml, and W. Grunewald, “Cell polarity: Stretching prevents developmental cramps,” Current Biology, vol. 22, no. 16. Cell Press, pp. R635–R637, 2012.","apa":"Li, H., Friml, J., & Grunewald, W. (2012). Cell polarity: Stretching prevents developmental cramps. Current Biology. Cell Press. https://doi.org/10.1016/j.cub.2012.06.053","ama":"Li H, Friml J, Grunewald W. Cell polarity: Stretching prevents developmental cramps. Current Biology. 2012;22(16):R635-R637. doi:10.1016/j.cub.2012.06.053","mla":"Li, Hongjiang, et al. “Cell Polarity: Stretching Prevents Developmental Cramps.” Current Biology, vol. 22, no. 16, Cell Press, 2012, pp. R635–37, doi:10.1016/j.cub.2012.06.053.","ista":"Li H, Friml J, Grunewald W. 2012. Cell polarity: Stretching prevents developmental cramps. Current Biology. 22(16), R635–R637.","chicago":"Li, Hongjiang, Jiří Friml, and Wim Grunewald. “Cell Polarity: Stretching Prevents Developmental Cramps.” Current Biology. Cell Press, 2012. https://doi.org/10.1016/j.cub.2012.06.053."},"date_updated":"2021-01-12T06:57:36Z","status":"public","type":"journal_article","_id":"2458"},{"abstract":[{"text":"Recently developed pharmacogenetic and optogenetic approaches, with their own advantages and disadvantages, have become indispensable tools in modern neuroscience. Here, we employed a previously described knock-in mouse line (GABA ARγ2 77Ilox) in which the γ2 subunit of the GABA A receptor (GABA AR) was mutated to become zolpidem insensitive (γ2 77I) and used viral vectors to swap γ2 77I with wild-type, zolpidem-sensitive γ2 subunits (γ2 77F). The verification of unaltered density and subcellular distribution of the virally introduced γ2 subunits requires their selective labelling. For this we generated six N- and six C-terminal-tagged γ2 subunits, with which cortical cultures of GABA ARγ2 -/- mice were transduced using lentiviruses. We found that the N-terminal AU1 tag resulted in excellent immunodetection and unimpaired synaptic localization. Unaltered kinetic properties of the AU1-tagged γ2 ( AU1γ2 77F) channels were demonstrated with whole-cell patch-clamp recordings of spontaneous IPSCs from cultured cells. Next, we carried out stereotaxic injections of lenti- and adeno-associated viruses containing Cre-recombinase and the AU1γ2 77F subunit (Cre-2A- AU1γ2 77F) into the neocortex of GABA ARγ2 77Ilox mice. Light microscopic immunofluorescence and electron microscopic freeze-fracture replica immunogold labelling demonstrated the efficient immunodetection of the AU1 tag and the normal enrichment of the AU1γ2 77F subunits in perisomatic GABAergic synapses. In line with this, miniature and action potential-evoked IPSCs whole-cell recorded from transduced cells had unaltered amplitudes, kinetics and restored zolpidem sensitivity. Our results obtained with a wide range of structural and functional verification methods reveal unaltered subcellular distributions and functional properties of γ2 77I and AU1γ2 77F GABA ARs in cortical pyramidal cells. This transgenic-viral pharmacogenetic approach has the advantage that it does not require any extrinsic protein that might endow some unforeseen alterations of the genetically modified cells. In addition, this virus-based approach opens up the possibility of modifying multiple cell types in distinct brain regions and performing alternative recombination-based intersectional genetic manipulations.","lang":"eng"}],"month":"04","intvolume":" 590","publisher":"Wiley-Blackwell","quality_controlled":0,"day":"07","publication":"Journal of Physiology","publication_status":"published","year":"2012","date_published":"2012-04-07T00:00:00Z","doi":"10.1113/jphysiol.2012.227538","issue":"7","volume":590,"date_created":"2018-12-11T11:57:53Z","page":"1517 - 1534","_id":"2476","status":"public","type":"journal_article","extern":1,"citation":{"chicago":"Sümegi, Máté, Yugo Fukazawa, Ko Matsui, Andrea Lörincz, Mark Eyre, Zoltán Nusser, and Ryuichi Shigemoto. “Virus-Mediated Swapping of Zolpidem-Insensitive with Zolpidem-Sensitive GABA A Receptors in Cortical Pyramidal Cells.” Journal of Physiology. Wiley-Blackwell, 2012. https://doi.org/10.1113/jphysiol.2012.227538.","ista":"Sümegi M, Fukazawa Y, Matsui K, Lörincz A, Eyre M, Nusser Z, Shigemoto R. 2012. Virus-mediated swapping of zolpidem-insensitive with zolpidem-sensitive GABA A receptors in cortical pyramidal cells. Journal of Physiology. 590(7), 1517–1534.","mla":"Sümegi, Máté, et al. “Virus-Mediated Swapping of Zolpidem-Insensitive with Zolpidem-Sensitive GABA A Receptors in Cortical Pyramidal Cells.” Journal of Physiology, vol. 590, no. 7, Wiley-Blackwell, 2012, pp. 1517–34, doi:10.1113/jphysiol.2012.227538.","ama":"Sümegi M, Fukazawa Y, Matsui K, et al. Virus-mediated swapping of zolpidem-insensitive with zolpidem-sensitive GABA A receptors in cortical pyramidal cells. Journal of Physiology. 2012;590(7):1517-1534. doi:10.1113/jphysiol.2012.227538","apa":"Sümegi, M., Fukazawa, Y., Matsui, K., Lörincz, A., Eyre, M., Nusser, Z., & Shigemoto, R. (2012). Virus-mediated swapping of zolpidem-insensitive with zolpidem-sensitive GABA A receptors in cortical pyramidal cells. Journal of Physiology. Wiley-Blackwell. https://doi.org/10.1113/jphysiol.2012.227538","ieee":"M. Sümegi et al., “Virus-mediated swapping of zolpidem-insensitive with zolpidem-sensitive GABA A receptors in cortical pyramidal cells,” Journal of Physiology, vol. 590, no. 7. Wiley-Blackwell, pp. 1517–1534, 2012.","short":"M. Sümegi, Y. Fukazawa, K. Matsui, A. Lörincz, M. Eyre, Z. Nusser, R. Shigemoto, Journal of Physiology 590 (2012) 1517–1534."},"date_updated":"2021-01-12T06:57:43Z","title":"Virus-mediated swapping of zolpidem-insensitive with zolpidem-sensitive GABA A receptors in cortical pyramidal cells","publist_id":"4425","author":[{"last_name":"Sümegi","full_name":"Sümegi, Máté","first_name":"Máté"},{"first_name":"Yugo","full_name":"Fukazawa, Yugo","last_name":"Fukazawa"},{"first_name":"Ko","last_name":"Matsui","full_name":"Matsui, Ko"},{"first_name":"Andrea","last_name":"Lörincz","full_name":"Lörincz, Andrea"},{"last_name":"Eyre","full_name":"Eyre, Mark D","first_name":"Mark"},{"full_name":"Nusser, Zoltán","last_name":"Nusser","first_name":"Zoltán"},{"id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","first_name":"Ryuichi","last_name":"Shigemoto","full_name":"Ryuichi Shigemoto","orcid":"0000-0001-8761-9444"}]},{"abstract":[{"lang":"eng","text":"Background: One of the best-characterized causative factors of Alzheimer's disease (AD) is the generation of amyloid-β peptide (Aβ). AD subjects are at high risk of epileptic seizures accompanied by aberrant neuronal excitability, which in itself enhances Aβ generation. However, the molecular linkage between epileptic seizures and Aβ generation in AD remains unclear. Results: X11 and X11-like (X11L) gene knockout mice suffered from epileptic seizures, along with a malfunction of hyperpolarization-activated cyclic nucleotide gated (HCN) channels. Genetic ablation of HCN1 in mice and HCN1 channel blockage in cultured Neuro2a (N2a) cells enhanced Aβ generation. Interestingly, HCN1 levels dramatically decreased in the temporal lobe of cynomolgus monkeys (Macaca fascicularis) during aging and were significantly diminished in the temporal lobe of sporadic AD patients. Conclusion: Because HCN1 associates with amyloid-β precursor protein (APP) and X11/X11L in the brain, genetic deficiency of X11/X11L may induce aberrant HCN1 distribution along with epilepsy. Moreover, the reduction in HCN1 levels in aged primates may contribute to augmented Aβ generation. Taken together, HCN1 is proposed to play an important role in the molecular linkage between epileptic seizures and Aβ generation, and in the aggravation of sporadic AD."}],"month":"10","intvolume":" 7","quality_controlled":0,"publisher":"BioMed Central","day":"03","publication":"Molecular Neurodegeneration","publication_status":"published","year":"2012","volume":7,"issue":"1","date_published":"2012-10-03T00:00:00Z","doi":"10.1186/1750-1326-7-50","date_created":"2018-12-11T11:57:53Z","_id":"2475","status":"public","type":"journal_article","extern":1,"date_updated":"2021-01-12T06:57:42Z","citation":{"ista":"Saito Y, Inoue T, Zhu G, Kimura N, Okada M, Nishimura M, Murayama S, Kaneko S, Shigemoto R, Imoto K, Suzuki T. 2012. Hyperpolarization-activated cyclic nucleotide gated channels: A potential molecular link between epileptic seizures and Aβ generation in Alzheimer’s disease. Molecular Neurodegeneration. 7(1).","chicago":"Saito, Yuhki, Tsuyoshi Inoue, Gang Zhu, Naoki Kimura, Motohiro Okada, Masaki Nishimura, Shigeo Murayama, et al. “Hyperpolarization-Activated Cyclic Nucleotide Gated Channels: A Potential Molecular Link between Epileptic Seizures and Aβ Generation in Alzheimer’s Disease.” Molecular Neurodegeneration. BioMed Central, 2012. https://doi.org/10.1186/1750-1326-7-50.","ama":"Saito Y, Inoue T, Zhu G, et al. Hyperpolarization-activated cyclic nucleotide gated channels: A potential molecular link between epileptic seizures and Aβ generation in Alzheimer’s disease. Molecular Neurodegeneration. 2012;7(1). doi:10.1186/1750-1326-7-50","apa":"Saito, Y., Inoue, T., Zhu, G., Kimura, N., Okada, M., Nishimura, M., … Suzuki, T. (2012). Hyperpolarization-activated cyclic nucleotide gated channels: A potential molecular link between epileptic seizures and Aβ generation in Alzheimer’s disease. Molecular Neurodegeneration. BioMed Central. https://doi.org/10.1186/1750-1326-7-50","ieee":"Y. Saito et al., “Hyperpolarization-activated cyclic nucleotide gated channels: A potential molecular link between epileptic seizures and Aβ generation in Alzheimer’s disease,” Molecular Neurodegeneration, vol. 7, no. 1. BioMed Central, 2012.","short":"Y. Saito, T. Inoue, G. Zhu, N. Kimura, M. Okada, M. Nishimura, S. Murayama, S. Kaneko, R. Shigemoto, K. Imoto, T. Suzuki, Molecular Neurodegeneration 7 (2012).","mla":"Saito, Yuhki, et al. “Hyperpolarization-Activated Cyclic Nucleotide Gated Channels: A Potential Molecular Link between Epileptic Seizures and Aβ Generation in Alzheimer’s Disease.” Molecular Neurodegeneration, vol. 7, no. 1, BioMed Central, 2012, doi:10.1186/1750-1326-7-50."},"title":"Hyperpolarization-activated cyclic nucleotide gated channels: A potential molecular link between epileptic seizures and Aβ generation in Alzheimer's disease","publist_id":"4426","author":[{"full_name":"Saito, Yuhki","last_name":"Saito","first_name":"Yuhki"},{"full_name":"Inoue, Tsuyoshi","last_name":"Inoue","first_name":"Tsuyoshi"},{"full_name":"Zhu, Gang","last_name":"Zhu","first_name":"Gang"},{"first_name":"Naoki","last_name":"Kimura","full_name":"Kimura, Naoki"},{"first_name":"Motohiro","full_name":"Okada, Motohiro","last_name":"Okada"},{"first_name":"Masaki","last_name":"Nishimura","full_name":"Nishimura, Masaki"},{"full_name":"Murayama, Shigeo","last_name":"Murayama","first_name":"Shigeo"},{"full_name":"Kaneko, Sunao","last_name":"Kaneko","first_name":"Sunao"},{"orcid":"0000-0001-8761-9444","full_name":"Ryuichi Shigemoto","last_name":"Shigemoto","first_name":"Ryuichi","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Imoto, Keiji","last_name":"Imoto","first_name":"Keiji"},{"first_name":"Toshiharu","last_name":"Suzuki","full_name":"Suzuki, Toshiharu"}]},{"title":"Application of an optogenetic byway for perturbing neuronal activity via glial photostimulation","publist_id":"4424","author":[{"full_name":"Sasaki, Takuya","last_name":"Sasaki","first_name":"Takuya"},{"last_name":"Beppu","full_name":"Beppu, Kaoru","first_name":"Kaoru"},{"last_name":"Tanaka","full_name":"Tanaka, Kenji F","first_name":"Kenji"},{"first_name":"Yugo","full_name":"Fukazawa, Yugo","last_name":"Fukazawa"},{"id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","first_name":"Ryuichi","last_name":"Shigemoto","orcid":"0000-0001-8761-9444","full_name":"Ryuichi Shigemoto"},{"last_name":"Matsui","full_name":"Matsui, Ko","first_name":"Ko"}],"extern":1,"date_updated":"2021-01-12T06:57:43Z","citation":{"ista":"Sasaki T, Beppu K, Tanaka K, Fukazawa Y, Shigemoto R, Matsui K. 2012. Application of an optogenetic byway for perturbing neuronal activity via glial photostimulation. PNAS. 109(50), 20720–20725.","chicago":"Sasaki, Takuya, Kaoru Beppu, Kenji Tanaka, Yugo Fukazawa, Ryuichi Shigemoto, and Ko Matsui. “Application of an Optogenetic Byway for Perturbing Neuronal Activity via Glial Photostimulation.” PNAS. National Academy of Sciences, 2012. https://doi.org/10.1073/pnas.1213458109.","ieee":"T. Sasaki, K. Beppu, K. Tanaka, Y. Fukazawa, R. Shigemoto, and K. Matsui, “Application of an optogenetic byway for perturbing neuronal activity via glial photostimulation,” PNAS, vol. 109, no. 50. National Academy of Sciences, pp. 20720–20725, 2012.","short":"T. Sasaki, K. Beppu, K. Tanaka, Y. Fukazawa, R. Shigemoto, K. Matsui, PNAS 109 (2012) 20720–20725.","ama":"Sasaki T, Beppu K, Tanaka K, Fukazawa Y, Shigemoto R, Matsui K. Application of an optogenetic byway for perturbing neuronal activity via glial photostimulation. PNAS. 2012;109(50):20720-20725. doi:10.1073/pnas.1213458109","apa":"Sasaki, T., Beppu, K., Tanaka, K., Fukazawa, Y., Shigemoto, R., & Matsui, K. (2012). Application of an optogenetic byway for perturbing neuronal activity via glial photostimulation. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.1213458109","mla":"Sasaki, Takuya, et al. “Application of an Optogenetic Byway for Perturbing Neuronal Activity via Glial Photostimulation.” PNAS, vol. 109, no. 50, National Academy of Sciences, 2012, pp. 20720–25, doi:10.1073/pnas.1213458109."},"status":"public","type":"journal_article","_id":"2477","date_created":"2018-12-11T11:57:54Z","date_published":"2012-12-11T00:00:00Z","doi":"10.1073/pnas.1213458109","issue":"50","volume":109,"page":"20720 - 20725","publication":"PNAS","day":"11","year":"2012","publication_status":"published","intvolume":" 109","month":"12","publisher":"National Academy of Sciences","quality_controlled":0,"abstract":[{"text":"Dynamic activity of glia has repeatedly been demonstrated, but if such activity is independent from neuronal activity, glia would not have any role in the information processing in the brain or in the generation of animal behavior. Evidence for neurons communicating with glia is solid, but the signaling pathway leading back from glial-to-neuronal activity was often difficult to study. Here, we introduced a transgenic mouse line in which channelrhodopsin-2, a light-gated cation channel, was expressed in astrocytes. Selective photostimulation of these astrocytes in vivo triggered neuronal activation. Using slice preparations, we show that glial photostimulation leads to release of glutamate, which was sufficient to activate AMPA receptors on Purkinje cells and to induce long-term depression of parallel fiber-to-Purkinje cell synapses through activation of metabotropic glutamate receptors. In contrast to neuronal synaptic vesicular release, glial activation likely causes preferential activation of extrasynaptic receptors that appose glial membrane. Finally, we show that neuronal activation by glial stimulation can lead to perturbation of cerebellar modulated motor behavior. These findings demonstrate that glia can modulate the tone of neuronal activity and behavior. This animal model is expected to be a potentially powerful approach to study the role of glia in brain function.","lang":"eng"}]},{"title":"Thin dendrites of cerebellar interneurons confer sublinear synaptic integration and a gradient of short-term plasticity","publist_id":"4427","author":[{"first_name":"Therese","last_name":"Abrahamsson","full_name":"Abrahamsson, Therese"},{"first_name":"Laurence","last_name":"Cathala","full_name":"Cathala, Laurence"},{"first_name":"Ko","full_name":"Matsui, Ko","last_name":"Matsui"},{"orcid":"0000-0001-8761-9444","full_name":"Ryuichi Shigemoto","last_name":"Shigemoto","first_name":"Ryuichi","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87"},{"first_name":"David","full_name":"DiGregorio, David A","last_name":"Digregorio"}],"extern":1,"date_updated":"2021-01-12T06:57:42Z","citation":{"mla":"Abrahamsson, Therese, et al. “Thin Dendrites of Cerebellar Interneurons Confer Sublinear Synaptic Integration and a Gradient of Short-Term Plasticity.” Neuron, vol. 73, no. 6, Elsevier, 2012, pp. 1159–72, doi:10.1016/j.neuron.2012.01.027.","apa":"Abrahamsson, T., Cathala, L., Matsui, K., Shigemoto, R., & Digregorio, D. (2012). Thin dendrites of cerebellar interneurons confer sublinear synaptic integration and a gradient of short-term plasticity. Neuron. Elsevier. https://doi.org/10.1016/j.neuron.2012.01.027","ama":"Abrahamsson T, Cathala L, Matsui K, Shigemoto R, Digregorio D. Thin dendrites of cerebellar interneurons confer sublinear synaptic integration and a gradient of short-term plasticity. Neuron. 2012;73(6):1159-1172. doi:10.1016/j.neuron.2012.01.027","short":"T. Abrahamsson, L. Cathala, K. Matsui, R. Shigemoto, D. Digregorio, Neuron 73 (2012) 1159–1172.","ieee":"T. Abrahamsson, L. Cathala, K. Matsui, R. Shigemoto, and D. Digregorio, “Thin dendrites of cerebellar interneurons confer sublinear synaptic integration and a gradient of short-term plasticity,” Neuron, vol. 73, no. 6. Elsevier, pp. 1159–1172, 2012.","chicago":"Abrahamsson, Therese, Laurence Cathala, Ko Matsui, Ryuichi Shigemoto, and David Digregorio. “Thin Dendrites of Cerebellar Interneurons Confer Sublinear Synaptic Integration and a Gradient of Short-Term Plasticity.” Neuron. Elsevier, 2012. https://doi.org/10.1016/j.neuron.2012.01.027.","ista":"Abrahamsson T, Cathala L, Matsui K, Shigemoto R, Digregorio D. 2012. Thin dendrites of cerebellar interneurons confer sublinear synaptic integration and a gradient of short-term plasticity. Neuron. 73(6), 1159–1172."},"status":"public","type":"journal_article","_id":"2474","date_published":"2012-03-22T00:00:00Z","doi":"10.1016/j.neuron.2012.01.027","issue":"6","volume":73,"date_created":"2018-12-11T11:57:52Z","page":"1159 - 1172","day":"22","publication":"Neuron","year":"2012","publication_status":"published","month":"03","intvolume":" 73","publisher":"Elsevier","quality_controlled":0,"abstract":[{"lang":"eng","text":"Interneurons are critical for neuronal circuit function, but how their dendritic morphologies and membrane properties influence information flow within neuronal circuits is largely unknown. We studied the spatiotemporal profile of synaptic integration and short-term plasticity in dendrites of mature cerebellar stellate cells by combining two-photon guided electrical stimulation, glutamate uncaging, electron microscopy, and modeling. Synaptic activation within thin (0.4 μm) dendrites produced somatic responses that became smaller and slower with increasing distance from the soma, sublinear subthreshold input-output relationships, and a somatodendritic gradient of short-term plasticity. Unlike most studies showing that neurons employ active dendritic mechanisms, we found that passive cable properties of thin dendrites determine the sublinear integration and plasticity gradient, which both result from large dendritic depolarizations that reduce synaptic driving force. These integrative properties allow stellate cells to act as spatiotemporal filters of synaptic input patterns, thereby biasing their output in favor of sparse presynaptic activity. Stellate cells are critical sources of inhibition in the cerebellum, but how their dendrites integrate excitatory synaptic inputs is unknown. Abrahamsson et al. show that thin dendrites and passive membrane properties of SCs promote sublinear synaptic summation and distance-dependent short-term plasticity. "}]},{"date_created":"2018-12-11T11:58:07Z","date_published":"2012-06-01T00:00:00Z","doi":"10.1002/hipo.20986","volume":22,"issue":"6","page":"1467 - 1480","publication":"Hippocampus","day":"01","year":"2012","publication_status":"published","intvolume":" 22","month":"06","quality_controlled":0,"publisher":"Wiley-Blackwell","abstract":[{"text":"We investigated the temporal and spatial expression of SK2 in the developing mouse hippocampus using molecular and biochemical techniques, quantitative immunogold electron microscopy, and electrophysiology. The mRNA encoding SK2 was expressed in the developing and adult hippocampus. Western blotting and immunohistochemistry showed that SK2 protein increased with age. This was accompanied by a shift in subcellular localization. Early in development (P5), SK2 was predominantly localized to the endoplasmic reticulum in the pyramidal cell layer. But by P30 SK2 was almost exclusively expressed in the dendrites and spines. The level of SK2 at the postsynaptic density (PSD) also increased during development. In the adult, SK2 expression on the spine plasma membrane showed a proximal-to-distal gradient. Consistent with this redistribution and gradient of SK2, the selective SK channel blocker apamin increased evoked excitatory postsynaptic potentials (EPSPs) only in CA1 pyramidal neurons from mice older than P15. However, the effect of apamin on EPSPs was not different between synapses in proximal or distal stratum radiatum or stratum lacunosum-moleculare in adult. These results show a developmental increase and gradient in SK2-containing channel surface expression that underlie their influence on neurotransmission, and that may contribute to increased memory acquisition during early development.","lang":"eng"}],"title":" Developmental profile of SK2 channel expression and function in CA1 neurons","author":[{"first_name":"Carmen","last_name":"Ballesteros Merino","full_name":"Ballesteros-Merino, Carmen"},{"first_name":"Michael","full_name":"Lin, Michael","last_name":"Lin"},{"first_name":"Wendy","full_name":"Wu, Wendy W","last_name":"Wu"},{"first_name":"Clotilde","last_name":"Ferrándiz Huertas","full_name":"Ferrándiz-Huertas, Clotilde"},{"last_name":"Cabañero","full_name":"Cabañero, María José","first_name":"María"},{"full_name":"Watanabe, Masahiko","last_name":"Watanabe","first_name":"Masahiko"},{"first_name":"Yugo","full_name":"Fukazawa, Yugo","last_name":"Fukazawa"},{"id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","first_name":"Ryuichi","last_name":"Shigemoto","full_name":"Ryuichi Shigemoto","orcid":"0000-0001-8761-9444"},{"first_name":"James","full_name":"Maylie, James G","last_name":"Maylie"},{"last_name":"Adelman","full_name":"Adelman, John P","first_name":"John"},{"first_name":"Rafael","last_name":"Luján","full_name":"Luján, Rafael"}],"publist_id":"4386","extern":1,"date_updated":"2021-01-12T06:57:57Z","citation":{"ista":"Ballesteros Merino C, Lin M, Wu W, Ferrándiz Huertas C, Cabañero M, Watanabe M, Fukazawa Y, Shigemoto R, Maylie J, Adelman J, Luján R. 2012. Developmental profile of SK2 channel expression and function in CA1 neurons. Hippocampus. 22(6), 1467–1480.","chicago":"Ballesteros Merino, Carmen, Michael Lin, Wendy Wu, Clotilde Ferrándiz Huertas, María Cabañero, Masahiko Watanabe, Yugo Fukazawa, et al. “ Developmental Profile of SK2 Channel Expression and Function in CA1 Neurons.” Hippocampus. Wiley-Blackwell, 2012. https://doi.org/10.1002/hipo.20986.","short":"C. Ballesteros Merino, M. Lin, W. Wu, C. Ferrándiz Huertas, M. Cabañero, M. Watanabe, Y. Fukazawa, R. Shigemoto, J. Maylie, J. Adelman, R. Luján, Hippocampus 22 (2012) 1467–1480.","ieee":"C. Ballesteros Merino et al., “ Developmental profile of SK2 channel expression and function in CA1 neurons,” Hippocampus, vol. 22, no. 6. Wiley-Blackwell, pp. 1467–1480, 2012.","ama":"Ballesteros Merino C, Lin M, Wu W, et al. Developmental profile of SK2 channel expression and function in CA1 neurons. Hippocampus. 2012;22(6):1467-1480. doi:10.1002/hipo.20986","apa":"Ballesteros Merino, C., Lin, M., Wu, W., Ferrándiz Huertas, C., Cabañero, M., Watanabe, M., … Luján, R. (2012). Developmental profile of SK2 channel expression and function in CA1 neurons. Hippocampus. Wiley-Blackwell. https://doi.org/10.1002/hipo.20986","mla":"Ballesteros Merino, Carmen, et al. “ Developmental Profile of SK2 Channel Expression and Function in CA1 Neurons.” Hippocampus, vol. 22, no. 6, Wiley-Blackwell, 2012, pp. 1467–80, doi:10.1002/hipo.20986."},"status":"public","type":"journal_article","_id":"2515"},{"year":"2012","publication_status":"published","publication":"Journal of Neuroscience","day":"15","page":"2357 - 2376","date_created":"2018-12-11T11:58:07Z","doi":"10.1523/JNEUROSCI.5243-11.2012","date_published":"2012-02-15T00:00:00Z","volume":32,"issue":"7","abstract":[{"lang":"eng","text":"Visual information must be relayed through the lateral geniculate nucleus before it reaches the visual cortex. However, not all spikes created in the retina lead to postsynaptic spikes and properties of the retinogeniculate synapse contribute to this filtering. To understand the mechanisms underlying this filtering process, we conducted electrophysiology to assess the properties of signal transmission in the Long-Evans rat. We also performed SDS-digested freeze-fracture replica labeling to quantify the receptor and transporter distribution, as well as EM reconstruction to describe the 3D structure. To analyze the impact of transmitter diffusion on the activity of the receptors, simulations were integrated. We identified that a large contributor to the filtering is the marked paired-pulse depression at this synapse, which was intensified by the morphological characteristics of the contacts. The broad presynaptic and postsynaptic contact area restricts transmitter diffusion two dimensionally. Additionally, the presence of multiple closely arranged release sites invites intersynaptic spillover, which causes desensitization of AMPA receptors. The presence of AMPA receptors that slowly recover from desensitization along with the high presynaptic release probability and multivesicular release at each synapse also contribute to the depression. These features contrast with many other synapses where spatiotemporal spread of transmitter is limited by rapid transmitter clearance allowing synapses to operate more independently. We propose that the micrometer-order structure can ultimately affect the visual information processing."}],"publisher":"Society for Neuroscience","quality_controlled":0,"intvolume":" 32","month":"02","date_updated":"2021-01-12T06:57:57Z","citation":{"short":"T. Budisantoso, K. Matsui, N. Kamasawa, Y. Fukazawa, R. Shigemoto, Journal of Neuroscience 32 (2012) 2357–2376.","ieee":"T. Budisantoso, K. Matsui, N. Kamasawa, Y. Fukazawa, and R. Shigemoto, “Mechanisms underlying signal filtering at a multisynapse contact,” Journal of Neuroscience, vol. 32, no. 7. Society for Neuroscience, pp. 2357–2376, 2012.","ama":"Budisantoso T, Matsui K, Kamasawa N, Fukazawa Y, Shigemoto R. Mechanisms underlying signal filtering at a multisynapse contact. Journal of Neuroscience. 2012;32(7):2357-2376. doi:10.1523/JNEUROSCI.5243-11.2012","apa":"Budisantoso, T., Matsui, K., Kamasawa, N., Fukazawa, Y., & Shigemoto, R. (2012). Mechanisms underlying signal filtering at a multisynapse contact. Journal of Neuroscience. Society for Neuroscience. https://doi.org/10.1523/JNEUROSCI.5243-11.2012","mla":"Budisantoso, Timotheus, et al. “Mechanisms Underlying Signal Filtering at a Multisynapse Contact.” Journal of Neuroscience, vol. 32, no. 7, Society for Neuroscience, 2012, pp. 2357–76, doi:10.1523/JNEUROSCI.5243-11.2012.","ista":"Budisantoso T, Matsui K, Kamasawa N, Fukazawa Y, Shigemoto R. 2012. Mechanisms underlying signal filtering at a multisynapse contact. Journal of Neuroscience. 32(7), 2357–2376.","chicago":"Budisantoso, Timotheus, Ko Matsui, Naomi Kamasawa, Yugo Fukazawa, and Ryuichi Shigemoto. “Mechanisms Underlying Signal Filtering at a Multisynapse Contact.” Journal of Neuroscience. Society for Neuroscience, 2012. https://doi.org/10.1523/JNEUROSCI.5243-11.2012."},"extern":1,"author":[{"first_name":"Timotheus","last_name":"Budisantoso","full_name":"Budisantoso, Timotheus"},{"first_name":"Ko","last_name":"Matsui","full_name":"Matsui, Ko"},{"last_name":"Kamasawa","full_name":"Kamasawa, Naomi","first_name":"Naomi"},{"first_name":"Yugo","last_name":"Fukazawa","full_name":"Fukazawa, Yugo"},{"orcid":"0000-0001-8761-9444","full_name":"Ryuichi Shigemoto","last_name":"Shigemoto","first_name":"Ryuichi","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87"}],"publist_id":"4387","title":"Mechanisms underlying signal filtering at a multisynapse contact","_id":"2514","type":"journal_article","status":"public"},{"publication_status":"published","year":"2012","publication":"Journal of Neuroscience","day":"26","page":"13555 - 13567","date_created":"2018-12-11T11:59:05Z","doi":"10.1523/JNEUROSCI.1142-12.2012","issue":"39","volume":32,"date_published":"2012-09-26T00:00:00Z","abstract":[{"lang":"eng","text":"R-type calcium channels (RTCCs) are well known for their role in synaptic plasticity, but little is known about their subcellular distribution across various neuronal compartments. Using subtype-specific antibodies, we characterized the regional and subcellular localization of Ca v2.3 in mice and rats at both light and electron microscopic levels. Ca v2.3 immunogold particles were found to be predominantly presynaptic in the interpeduncular nucleus, but postsynaptic in other brain regions. Serial section analysis of electron microscopic images from the hippocampal CA1 revealed a higher density of immunogold particles in the dendritic shaft plasma membrane compared with the pyramidal cell somata. However, the labeling densities were not significantly different among the apical, oblique, or basal dendrites. Immunogold particles were also observed over the plasma membrane of dendritic spines, including both synaptic and extrasynaptic sites. Individual spine heads contained <20 immunogold particles, with an average density of ~260 immunoparticles per μm 3 spine head volume, in accordance with the density of RTCCs estimated using calcium imaging (Sabatini and Svoboda, 2000). The Ca v2.3 density was variable among similar-sized spine heads and did not correlate with the density in the parent dendrite, implying that spines are individual calcium compartments operating autonomously from their parent dendrites."}],"publisher":"Society for Neuroscience","quality_controlled":0,"intvolume":" 32","month":"09","citation":{"mla":"Parajuli, Laxmi, et al. “Quantitative Regional and Ultra Structural Localization of the Ca v2 3 Subunit of R Type Calcium Channel in Mouse Brain.” Journal of Neuroscience, vol. 32, no. 39, Society for Neuroscience, 2012, pp. 13555–67, doi:10.1523/JNEUROSCI.1142-12.2012.","apa":"Parajuli, L., Nakajima, C., Kulik, Á., Matsui, K., Schneider, T., Shigemoto, R., & Fukazawa, Y. (2012). Quantitative regional and ultra structural localization of the Ca v2 3 subunit of R type calcium channel in mouse brain. Journal of Neuroscience. Society for Neuroscience. https://doi.org/10.1523/JNEUROSCI.1142-12.2012","ama":"Parajuli L, Nakajima C, Kulik Á, et al. Quantitative regional and ultra structural localization of the Ca v2 3 subunit of R type calcium channel in mouse brain. Journal of Neuroscience. 2012;32(39):13555-13567. doi:10.1523/JNEUROSCI.1142-12.2012","ieee":"L. Parajuli et al., “Quantitative regional and ultra structural localization of the Ca v2 3 subunit of R type calcium channel in mouse brain,” Journal of Neuroscience, vol. 32, no. 39. Society for Neuroscience, pp. 13555–13567, 2012.","short":"L. Parajuli, C. Nakajima, Á. Kulik, K. Matsui, T. Schneider, R. Shigemoto, Y. Fukazawa, Journal of Neuroscience 32 (2012) 13555–13567.","chicago":"Parajuli, Laxmi, Chikako Nakajima, Ákos Kulik, Ko Matsui, Toni Schneider, Ryuichi Shigemoto, and Yugo Fukazawa. “Quantitative Regional and Ultra Structural Localization of the Ca v2 3 Subunit of R Type Calcium Channel in Mouse Brain.” Journal of Neuroscience. Society for Neuroscience, 2012. https://doi.org/10.1523/JNEUROSCI.1142-12.2012.","ista":"Parajuli L, Nakajima C, Kulik Á, Matsui K, Schneider T, Shigemoto R, Fukazawa Y. 2012. Quantitative regional and ultra structural localization of the Ca v2 3 subunit of R type calcium channel in mouse brain. Journal of Neuroscience. 32(39), 13555–13567."},"date_updated":"2021-01-12T06:59:04Z","extern":1,"publist_id":"4208","author":[{"last_name":"Parajuli","full_name":"Parajuli, Laxmi K","first_name":"Laxmi"},{"full_name":"Nakajima, Chikako","last_name":"Nakajima","first_name":"Chikako"},{"last_name":"Kulik","full_name":"Kulik, Ákos","first_name":"Ákos"},{"full_name":"Matsui, Ko","last_name":"Matsui","first_name":"Ko"},{"first_name":"Toni","full_name":"Schneider, Toni","last_name":"Schneider"},{"orcid":"0000-0001-8761-9444","full_name":"Ryuichi Shigemoto","last_name":"Shigemoto","first_name":"Ryuichi","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Yugo","full_name":"Fukazawa, Yugo","last_name":"Fukazawa"}],"title":"Quantitative regional and ultra structural localization of the Ca v2 3 subunit of R type calcium channel in mouse brain","_id":"2689","type":"journal_article","status":"public"},{"type":"journal_article","status":"public","_id":"2687","publist_id":"4210","author":[{"first_name":"Yoshiaki","full_name":"Shinohara, Yoshiaki","last_name":"Shinohara"},{"full_name":"Hosoya, Aki","last_name":"Hosoya","first_name":"Aki"},{"first_name":"Nobuyuki","last_name":"Yamasaki","full_name":"Yamasaki, Nobuyuki"},{"first_name":"Hassan","full_name":"Ahmed, Hassan","last_name":"Ahmed"},{"full_name":"Hattori, Satoko","last_name":"Hattori","first_name":"Satoko"},{"first_name":"Megumi","full_name":"Eguchi, Megumi","last_name":"Eguchi"},{"first_name":"Shun","full_name":"Yamaguchi, Shun","last_name":"Yamaguchi"},{"last_name":"Miyakawa","full_name":"Miyakawa, Tsuyoshi","first_name":"Tsuyoshi"},{"full_name":"Hirase, Hajime","last_name":"Hirase","first_name":"Hajime"},{"last_name":"Shigemoto","full_name":"Ryuichi Shigemoto","orcid":"0000-0001-8761-9444","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","first_name":"Ryuichi"}],"title":"Right-hemispheric dominance of spatial memory in split-brain mice","citation":{"ista":"Shinohara Y, Hosoya A, Yamasaki N, Ahmed H, Hattori S, Eguchi M, Yamaguchi S, Miyakawa T, Hirase H, Shigemoto R. 2012. Right-hemispheric dominance of spatial memory in split-brain mice. Hippocampus. 22(2), 117–121.","chicago":"Shinohara, Yoshiaki, Aki Hosoya, Nobuyuki Yamasaki, Hassan Ahmed, Satoko Hattori, Megumi Eguchi, Shun Yamaguchi, Tsuyoshi Miyakawa, Hajime Hirase, and Ryuichi Shigemoto. “Right-Hemispheric Dominance of Spatial Memory in Split-Brain Mice.” Hippocampus. Wiley-Blackwell, 2012. https://doi.org/10.1002/hipo.20886.","ieee":"Y. Shinohara et al., “Right-hemispheric dominance of spatial memory in split-brain mice,” Hippocampus, vol. 22, no. 2. Wiley-Blackwell, pp. 117–121, 2012.","short":"Y. Shinohara, A. Hosoya, N. Yamasaki, H. Ahmed, S. Hattori, M. Eguchi, S. Yamaguchi, T. Miyakawa, H. Hirase, R. Shigemoto, Hippocampus 22 (2012) 117–121.","apa":"Shinohara, Y., Hosoya, A., Yamasaki, N., Ahmed, H., Hattori, S., Eguchi, M., … Shigemoto, R. (2012). Right-hemispheric dominance of spatial memory in split-brain mice. Hippocampus. Wiley-Blackwell. https://doi.org/10.1002/hipo.20886","ama":"Shinohara Y, Hosoya A, Yamasaki N, et al. Right-hemispheric dominance of spatial memory in split-brain mice. Hippocampus. 2012;22(2):117-121. doi:10.1002/hipo.20886","mla":"Shinohara, Yoshiaki, et al. “Right-Hemispheric Dominance of Spatial Memory in Split-Brain Mice.” Hippocampus, vol. 22, no. 2, Wiley-Blackwell, 2012, pp. 117–21, doi:10.1002/hipo.20886."},"date_updated":"2021-01-12T06:59:03Z","extern":1,"publisher":"Wiley-Blackwell","quality_controlled":0,"month":"01","intvolume":" 22","abstract":[{"text":"Left-right asymmetry of human brain function has been known for a century, although much of molecular and cellular basis of brain laterality remains to be elusive. Recent studies suggest that hippocampal CA3-CA1 excitatory synapses are asymmetrically arranged, however, the functional implication of the asymmetrical circuitry has not been studied at the behavioral level. In order to address the left-right asymmetry of hippocampal function in behaving mice, we analyzed the performance of "split-brain" mice in the Barnes maze. The "split-brain" mice received ventral hippocampal commissure and corpus callosum transection in addition to deprivation of visual input from one eye. In such mice, the hippocampus in the side of visual deprivation receives sensory-driven input. Better spatial task performance was achieved by the mice which were forced to use the right hippocampus than those which were forced to use the left hippocampus. In two-choice spatial maze, forced usage of left hippocampus resulted in a comparable performance to the right counterpart, suggesting that both hippocampal hemispheres are capable of conducting spatial learning. Therefore, the results obtained from the Barnes maze suggest that the usage of the right hippocampus improves the accuracy of spatial memory. Performance of non-spatial yet hippocampus-dependent tasks (e.g. fear conditioning) was not influenced by the laterality of the hippocampus.","lang":"eng"}],"page":"117 - 121","issue":"2","date_published":"2012-01-01T00:00:00Z","doi":"10.1002/hipo.20886","volume":22,"date_created":"2018-12-11T11:59:04Z","year":"2012","publication_status":"published","day":"01","publication":"Hippocampus"},{"title":"Intra-synapse-type and inter-synapse-type relationships between synaptic size and AMPAR expression","author":[{"first_name":"Yugo","last_name":"Fukazawa","full_name":"Fukazawa, Yugo"},{"orcid":"0000-0001-8761-9444","full_name":"Ryuichi Shigemoto","last_name":"Shigemoto","id":"499F3ABC-F248-11E8-B48F-1D18A9856A87","first_name":"Ryuichi"}],"publist_id":"4209","extern":1,"date_updated":"2021-01-12T06:59:03Z","citation":{"ista":"Fukazawa Y, Shigemoto R. 2012. Intra-synapse-type and inter-synapse-type relationships between synaptic size and AMPAR expression. Current Opinion in Neurobiology. 22(3), 446–452.","chicago":"Fukazawa, Yugo, and Ryuichi Shigemoto. “Intra-Synapse-Type and Inter-Synapse-Type Relationships between Synaptic Size and AMPAR Expression.” Current Opinion in Neurobiology. Elsevier, 2012. https://doi.org/10.1016/j.conb.2012.01.006.","short":"Y. Fukazawa, R. Shigemoto, Current Opinion in Neurobiology 22 (2012) 446–452.","ieee":"Y. Fukazawa and R. Shigemoto, “Intra-synapse-type and inter-synapse-type relationships between synaptic size and AMPAR expression,” Current Opinion in Neurobiology, vol. 22, no. 3. Elsevier, pp. 446–452, 2012.","apa":"Fukazawa, Y., & Shigemoto, R. (2012). Intra-synapse-type and inter-synapse-type relationships between synaptic size and AMPAR expression. Current Opinion in Neurobiology. Elsevier. https://doi.org/10.1016/j.conb.2012.01.006","ama":"Fukazawa Y, Shigemoto R. Intra-synapse-type and inter-synapse-type relationships between synaptic size and AMPAR expression. Current Opinion in Neurobiology. 2012;22(3):446-452. doi:10.1016/j.conb.2012.01.006","mla":"Fukazawa, Yugo, and Ryuichi Shigemoto. “Intra-Synapse-Type and Inter-Synapse-Type Relationships between Synaptic Size and AMPAR Expression.” Current Opinion in Neurobiology, vol. 22, no. 3, Elsevier, 2012, pp. 446–52, doi:10.1016/j.conb.2012.01.006."},"status":"public","type":"journal_article","_id":"2688","date_created":"2018-12-11T11:59:04Z","date_published":"2012-06-01T00:00:00Z","doi":"10.1016/j.conb.2012.01.006","volume":22,"issue":"3","page":"446 - 452","publication":"Current Opinion in Neurobiology","day":"01","year":"2012","publication_status":"published","intvolume":" 22","month":"06","quality_controlled":0,"publisher":"Elsevier","abstract":[{"lang":"eng","text":"To gain insights into structure-function relationship of excitatory synapses, we revisit our quantitative analysis of synaptic AMPAR by highly sensitive freeze-fracture replica labeling in eight different connections. All of these connections showed linear correlation between synapse size and AMPAR number indicating a common intra-synapse-type relationship in CNS synapses. On the contrary, inter-synapse-type relationship is unexpected indicating no correlation between averages of synapse size and AMPAR number. Interestingly, connections with large average synapse size and low AMPAR density showed high variability of AMPAR number and mosaic distribution within the postsynaptic membrane. We propose an idea that these connections may quickly exhibit synaptic plasticity by modifying AMPAR density/number whereas those with high AMPAR density change their efficacy by modifying synapse size."}]},{"citation":{"chicago":"Erdös, László. “Universality for Random Matrices and Log-Gases.” ArXiv. ArXiv, 2012.","ista":"Erdös L. 2012. Universality for random matrices and log-gases. ArXiv, .","mla":"Erdös, László. “Universality for Random Matrices and Log-Gases.” ArXiv, ArXiv, 2012.","short":"L. Erdös, ArXiv (2012).","ieee":"L. Erdös, “Universality for random matrices and log-gases,” ArXiv. ArXiv, 2012.","apa":"Erdös, L. (2012). Universality for random matrices and log-gases. ArXiv. ArXiv.","ama":"Erdös L. Universality for random matrices and log-gases. ArXiv. 2012."},"date_updated":"2021-01-12T06:59:06Z","extern":1,"publist_id":"4201","author":[{"full_name":"László Erdös","orcid":"0000-0001-5366-9603","last_name":"Erdös","first_name":"László","id":"4DBD5372-F248-11E8-B48F-1D18A9856A87"}],"title":"Universality for random matrices and log-gases","_id":"2696","type":"preprint","status":"public","publication_status":"published","year":"2012","day":"04","publication":"ArXiv","date_published":"2012-12-04T00:00:00Z","date_created":"2018-12-11T11:59:07Z","publisher":"ArXiv","quality_controlled":0,"main_file_link":[{"open_access":"1","url":"http://arxiv.org/abs/1212.0839"}],"oa":1,"month":"12"}]