[{"month":"03","day":"14","page":"57 - 76","quality_controlled":0,"citation":{"apa":"Kondrashov, F. (2011). Gene Dosage and Duplication. In Evolution after Gene Duplication (pp. 57–76). Wiley-Blackwell. https://doi.org/10.1002/9780470619902.ch4","ieee":"F. Kondrashov, “Gene Dosage and Duplication,” in Evolution after Gene Duplication, Wiley-Blackwell, 2011, pp. 57–76.","ista":"Kondrashov F. 2011.Gene Dosage and Duplication. In: Evolution after Gene Duplication. , 57–76.","ama":"Kondrashov F. Gene Dosage and Duplication. In: Evolution after Gene Duplication. Wiley-Blackwell; 2011:57-76. doi:10.1002/9780470619902.ch4","chicago":"Kondrashov, Fyodor. “Gene Dosage and Duplication.” In Evolution after Gene Duplication, 57–76. Wiley-Blackwell, 2011. https://doi.org/10.1002/9780470619902.ch4.","short":"F. Kondrashov, in:, Evolution after Gene Duplication, Wiley-Blackwell, 2011, pp. 57–76.","mla":"Kondrashov, Fyodor. “Gene Dosage and Duplication.” Evolution after Gene Duplication, Wiley-Blackwell, 2011, pp. 57–76, doi:10.1002/9780470619902.ch4."},"publication":"Evolution after Gene Duplication","doi":"10.1002/9780470619902.ch4","date_published":"2011-03-14T00:00:00Z","type":"book_chapter","extern":1,"publist_id":"6766","publisher":"Wiley-Blackwell","title":"Gene Dosage and Duplication","publication_status":"published","status":"public","year":"2011","_id":"881","date_created":"2018-12-11T11:49:00Z","date_updated":"2021-01-12T08:21:08Z","author":[{"last_name":"Kondrashov","first_name":"Fyodor","orcid":"0000-0001-8243-4694","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87","full_name":"Fyodor Kondrashov"}]},{"citation":{"ama":"Angelini T, Hannezo EB, Trepatc X, Marquez M, Fredberg J, Weitz D. Glass-like dynamics of collective cell migration. Proceedings of the National Academy of Sciences of the United States of America. 2011;108(12):4714-4719. doi:10.1073/pnas.1010059108","ista":"Angelini T, Hannezo EB, Trepatc X, Marquez M, Fredberg J, Weitz D. 2011. Glass-like dynamics of collective cell migration. Proceedings of the National Academy of Sciences of the United States of America. 108(12), 4714–4719.","ieee":"T. Angelini, E. B. Hannezo, X. Trepatc, M. Marquez, J. Fredberg, and D. Weitz, “Glass-like dynamics of collective cell migration,” Proceedings of the National Academy of Sciences of the United States of America, vol. 108, no. 12. PNAS, pp. 4714–4719, 2011.","apa":"Angelini, T., Hannezo, E. B., Trepatc, X., Marquez, M., Fredberg, J., & Weitz, D. (2011). Glass-like dynamics of collective cell migration. Proceedings of the National Academy of Sciences of the United States of America. PNAS. https://doi.org/10.1073/pnas.1010059108","mla":"Angelini, Thomas, et al. “Glass-like Dynamics of Collective Cell Migration.” Proceedings of the National Academy of Sciences of the United States of America, vol. 108, no. 12, PNAS, 2011, pp. 4714–19, doi:10.1073/pnas.1010059108.","short":"T. Angelini, E.B. Hannezo, X. Trepatc, M. Marquez, J. Fredberg, D. Weitz, Proceedings of the National Academy of Sciences of the United States of America 108 (2011) 4714–4719.","chicago":"Angelini, Thomas, Edouard B Hannezo, Xavier Trepatc, Manuel Marquez, Jeffrey Fredberg, and David Weitz. “Glass-like Dynamics of Collective Cell Migration.” Proceedings of the National Academy of Sciences of the United States of America. PNAS, 2011. https://doi.org/10.1073/pnas.1010059108."},"publication":"Proceedings of the National Academy of Sciences of the United States of America","page":"4714 - 4719","quality_controlled":"1","date_published":"2011-03-22T00:00:00Z","doi":"10.1073/pnas.1010059108","language":[{"iso":"eng"}],"month":"03","day":"22","_id":"919","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2011","intvolume":" 108","publisher":"PNAS","title":"Glass-like dynamics of collective cell migration","publication_status":"published","status":"public","author":[{"full_name":"Angelini, Thomas","first_name":"Thomas","last_name":"Angelini"},{"id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6005-1561","first_name":"Edouard B","last_name":"Hannezo","full_name":"Hannezo, Edouard B"},{"full_name":"Trepatc, Xavier","first_name":"Xavier","last_name":"Trepatc"},{"first_name":"Manuel","last_name":"Marquez","full_name":"Marquez, Manuel"},{"full_name":"Fredberg, Jeffrey","first_name":"Jeffrey","last_name":"Fredberg"},{"last_name":"Weitz","first_name":"David","full_name":"Weitz, David"}],"oa_version":"None","volume":108,"date_created":"2018-12-11T11:49:12Z","date_updated":"2021-01-12T08:21:54Z","type":"journal_article","publist_id":"6522","issue":"12","abstract":[{"text":"Collective cell migration in tissues occurs throughout embryonic development, during wound healing, and in cancerous tumor invasion, yet most detailed knowledge of cell migration comes from single-cell studies. As single cells migrate, the shape of the cell body fluctuates dramatically through cyclic processes of extension, adhesion, and retraction, accompanied by erratic changes in migration direction. Within confluent cell layers, such subcellular motions must be coupled between neighbors, yet the influence of these subcellular motions on collective migration is not known. Here we study motion within a confluent epithelial cell sheet, simultaneously measuring collective migration and subcellular motions, covering a broad range of length scales, time scales, and cell densities. At large length scales and time scales collective migration slows as cell density rises, yet the fastest cells move in large, multicell groups whose scale grows with increasing cell density. This behavior has an intriguing analogy to dynamic heterogeneities found in particulate systems as they become more crowded and approach a glass transition. In addition we find a diminishing self-diffusivity of short-wavelength motions within the cell layer, and growing peaks in the vibrational density of states associated with cooperative cell-shape fluctuations. Both of these observations are also intriguingly reminiscent of a glass transition. Thus, these results provide a broad and suggestive analogy between cell motion within a confluent layer and the dynamics of supercooled colloidal and molecular fluids approaching a glass transition.","lang":"eng"}],"extern":"1"},{"article_processing_charge":"No","day":"11","month":"08","date_published":"2011-08-11T00:00:00Z","doi":"10.1103/PhysRevLett.107.078104","language":[{"iso":"eng"}],"citation":{"short":"E.B. Hannezo, J. Prost, J. Joanny, Physical Review Letters 107 (2011).","mla":"Hannezo, Edouard B., et al. “Instabilities of Monolayered Epithelia Shape and Structure of Villi and Crypts.” Physical Review Letters, vol. 107, no. 7, American Physical Society, 2011, doi:10.1103/PhysRevLett.107.078104.","chicago":"Hannezo, Edouard B, Jacques Prost, and Jean Joanny. “Instabilities of Monolayered Epithelia Shape and Structure of Villi and Crypts.” Physical Review Letters. American Physical Society, 2011. https://doi.org/10.1103/PhysRevLett.107.078104.","ama":"Hannezo EB, Prost J, Joanny J. Instabilities of monolayered epithelia Shape and structure of villi and crypts. Physical Review Letters. 2011;107(7). doi:10.1103/PhysRevLett.107.078104","ieee":"E. B. Hannezo, J. Prost, and J. Joanny, “Instabilities of monolayered epithelia Shape and structure of villi and crypts,” Physical Review Letters, vol. 107, no. 7. American Physical Society, 2011.","apa":"Hannezo, E. B., Prost, J., & Joanny, J. (2011). Instabilities of monolayered epithelia Shape and structure of villi and crypts. Physical Review Letters. American Physical Society. https://doi.org/10.1103/PhysRevLett.107.078104","ista":"Hannezo EB, Prost J, Joanny J. 2011. Instabilities of monolayered epithelia Shape and structure of villi and crypts. Physical Review Letters. 107(7)."},"publication":"Physical Review Letters","issue":"7","publist_id":"6521","abstract":[{"text":"We study theoretically the shapes of a dividing epithelial monolayer of cells lying on top of an elastic stroma. The negative tension created by cell division provokes a buckling instability at a finite wave vector leading to the formation of periodic arrays of villi and crypts. The instability is similar to the buckling of a metallic plate under compression. We use the results to rationalize the various structures of the intestinal lining observed in vivo. Taking into account the coupling between cell division and local curvature, we obtain different patterns of villi and crypts, which could explain the different morphologies of the small intestine and the colon.","lang":"eng"}],"extern":"1","type":"journal_article","author":[{"first_name":"Edouard B","last_name":"Hannezo","id":"3A9DB764-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-6005-1561","full_name":"Hannezo, Edouard B"},{"full_name":"Prost, Jacques","first_name":"Jacques","last_name":"Prost"},{"last_name":"Joanny","first_name":"Jean","full_name":"Joanny, Jean"}],"oa_version":"None","volume":107,"date_created":"2018-12-11T11:49:11Z","date_updated":"2021-01-12T08:21:54Z","acknowledgement":"We thank S. Fre and M. Huygue for discussion and for showing us in vivo samples and A. Bergès for help with the manuscript.","_id":"918","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2011","intvolume":" 107","publisher":"American Physical Society","publication_status":"published","title":"Instabilities of monolayered epithelia Shape and structure of villi and crypts","status":"public"},{"extern":"1","volume":20,"date_updated":"2021-12-14T08:34:37Z","date_created":"2021-06-08T06:23:39Z","author":[{"id":"6973db13-dd5f-11ea-814e-b3e5455e9ed1","orcid":"0000-0002-0123-8649","first_name":"Daniel","last_name":"Zilberman","full_name":"Zilberman, Daniel"}],"department":[{"_id":"DaZi"}],"publisher":"Elsevier","publication_status":"published","pmid":1,"year":"2011","publication_identifier":{"issn":["1534-5807"],"eissn":["1878-1551"]},"month":"06","language":[{"iso":"eng"}],"doi":"10.1016/j.devcel.2011.05.018","quality_controlled":"1","main_file_link":[{"url":"https://doi.org/10.1016/j.devcel.2011.05.018","open_access":"1"}],"external_id":{"pmid":["21664571"]},"oa":1,"issue":"6","abstract":[{"text":"Little is known about chromatin remodeling events immediately after fertilization. A recent report by Autran et al. (2011) in Cell now shows that chromatin regulatory pathways that silence transposable elements are responsible for global delayed activation of gene expression in the early Arabidopsis embryo.","lang":"eng"}],"type":"other_academic_publication","oa_version":"Published Version","intvolume":" 20","status":"public","title":"Balancing parental contributions in plant embryonic gene activation","user_id":"8b945eb4-e2f2-11eb-945a-df72226e66a9","_id":"9522","article_processing_charge":"No","day":"14","date_published":"2011-06-14T00:00:00Z","page":"735-736","citation":{"chicago":"Zilberman, Daniel. Balancing Parental Contributions in Plant Embryonic Gene Activation. Developmental Cell. Vol. 20. Elsevier, 2011. https://doi.org/10.1016/j.devcel.2011.05.018.","mla":"Zilberman, Daniel. “Balancing Parental Contributions in Plant Embryonic Gene Activation.” Developmental Cell, vol. 20, no. 6, Elsevier, 2011, pp. 735–36, doi:10.1016/j.devcel.2011.05.018.","short":"D. Zilberman, Balancing Parental Contributions in Plant Embryonic Gene Activation, Elsevier, 2011.","ista":"Zilberman D. 2011. Balancing parental contributions in plant embryonic gene activation, Elsevier,p.","ieee":"D. Zilberman, Balancing parental contributions in plant embryonic gene activation, vol. 20, no. 6. Elsevier, 2011, pp. 735–736.","apa":"Zilberman, D. (2011). Balancing parental contributions in plant embryonic gene activation. Developmental Cell (Vol. 20, pp. 735–736). Elsevier. https://doi.org/10.1016/j.devcel.2011.05.018","ama":"Zilberman D. Balancing Parental Contributions in Plant Embryonic Gene Activation. Vol 20. Elsevier; 2011:735-736. doi:10.1016/j.devcel.2011.05.018"},"publication":"Developmental Cell"},{"scopus_import":"1","day":"01","article_processing_charge":"No","page":"286-293","publication":"Computer Analysis of Images and Patterns","citation":{"ama":"Gonzalez-Diaz R, Ion A, Jimenez MJ, Poyatos R. Incremental-decremental algorithm for computing AT-models and persistent homology. In: Computer Analysis of Images and Patterns. Vol 6854. Springer Nature; 2011:286-293. doi:10.1007/978-3-642-23672-3_35","apa":"Gonzalez-Diaz, R., Ion, A., Jimenez, M. J., & Poyatos, R. (2011). Incremental-decremental algorithm for computing AT-models and persistent homology. In Computer Analysis of Images and Patterns (Vol. 6854, pp. 286–293). Seville, Spain: Springer Nature. https://doi.org/10.1007/978-3-642-23672-3_35","ieee":"R. Gonzalez-Diaz, A. Ion, M. J. Jimenez, and R. Poyatos, “Incremental-decremental algorithm for computing AT-models and persistent homology,” in Computer Analysis of Images and Patterns, Seville, Spain, 2011, vol. 6854, pp. 286–293.","ista":"Gonzalez-Diaz R, Ion A, Jimenez MJ, Poyatos R. 2011. Incremental-decremental algorithm for computing AT-models and persistent homology. Computer Analysis of Images and Patterns. CAIP: International Conference on Computer Analysis of Images and Patterns, LNCS, vol. 6854, 286–293.","short":"R. Gonzalez-Diaz, A. Ion, M.J. Jimenez, R. Poyatos, in:, Computer Analysis of Images and Patterns, Springer Nature, 2011, pp. 286–293.","mla":"Gonzalez-Diaz, Rocio, et al. “Incremental-Decremental Algorithm for Computing AT-Models and Persistent Homology.” Computer Analysis of Images and Patterns, vol. 6854, Springer Nature, 2011, pp. 286–93, doi:10.1007/978-3-642-23672-3_35.","chicago":"Gonzalez-Diaz, Rocio, Adrian Ion, Maria Jose Jimenez, and Regina Poyatos. “Incremental-Decremental Algorithm for Computing AT-Models and Persistent Homology.” In Computer Analysis of Images and Patterns, 6854:286–93. Springer Nature, 2011. https://doi.org/10.1007/978-3-642-23672-3_35."},"date_published":"2011-08-01T00:00:00Z","alternative_title":["LNCS"],"type":"conference","abstract":[{"text":"In this paper, we establish a correspondence between the incremental algorithm for computing AT-models [8,9] and the one for computing persistent homology [6,14,15]. We also present a decremental algorithm for computing AT-models that allows to extend the persistence computation to a wider setting. Finally, we show how to combine incremental and decremental techniques for persistent homology computation.","lang":"eng"}],"status":"public","title":"Incremental-decremental algorithm for computing AT-models and persistent homology","intvolume":" 6854","user_id":"6785fbc1-c503-11eb-8a32-93094b40e1cf","_id":"9648","oa_version":"Published Version","month":"08","publication_identifier":{"issn":["03029743"],"isbn":["9783642236716"],"eissn":["16113349"]},"quality_controlled":"1","oa":1,"main_file_link":[{"url":"http://hdl.handle.net/11441/30766","open_access":"1"}],"language":[{"iso":"eng"}],"conference":{"name":"CAIP: International Conference on Computer Analysis of Images and Patterns","end_date":"2011-08-31","location":"Seville, Spain","start_date":"2011-08-29"},"doi":"10.1007/978-3-642-23672-3_35","publication_status":"published","department":[{"_id":"HeEd"}],"publisher":"Springer Nature","year":"2011","date_updated":"2021-08-12T13:53:17Z","date_created":"2021-07-11T22:01:19Z","volume":6854,"author":[{"first_name":"Rocio","last_name":"Gonzalez-Diaz","full_name":"Gonzalez-Diaz, Rocio"},{"full_name":"Ion, Adrian","first_name":"Adrian","last_name":"Ion","id":"29F89302-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Jimenez","first_name":"Maria Jose","full_name":"Jimenez, Maria Jose"},{"last_name":"Poyatos","first_name":"Regina","full_name":"Poyatos, Regina"}]}]