--- _id: '2090' author: - first_name: Bernd full_name: Bernd Bickel id: 49876194-F248-11E8-B48F-1D18A9856A87 last_name: Bickel orcid: 0000-0001-6511-9385 - first_name: Tim full_name: Weyrich, Tim last_name: Weyrich - first_name: Wojciech full_name: Matusik, Wojciech last_name: Matusik - first_name: Hanspeter full_name: Pfister, Hanspeter last_name: Pfister - first_name: Craig full_name: Donner, Craig last_name: Donner - first_name: Chien full_name: Tu, Chien last_name: Tu - first_name: Janet full_name: McAndless, Janet M last_name: Mcandless - first_name: Jinho full_name: Lee, Jinho last_name: Lee - first_name: Addy full_name: Ngan, Addy last_name: Ngan - first_name: Henrik full_name: Jensen, Henrik W last_name: Jensen - first_name: Markus full_name: Groß, Markus S last_name: Groß citation: ama: 'Bickel B, Weyrich T, Matusik W, et al. Processing and editing of faces using a measurement-based skin reflectance model. In: ACM; 2006. doi:10.1145/1179849.1180059' apa: 'Bickel, B., Weyrich, T., Matusik, W., Pfister, H., Donner, C., Tu, C., … Groß, M. (2006). Processing and editing of faces using a measurement-based skin reflectance model. Presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, ACM. https://doi.org/10.1145/1179849.1180059' chicago: Bickel, Bernd, Tim Weyrich, Wojciech Matusik, Hanspeter Pfister, Craig Donner, Chien Tu, Janet Mcandless, et al. “Processing and Editing of Faces Using a Measurement-Based Skin Reflectance Model.” ACM, 2006. https://doi.org/10.1145/1179849.1180059. ieee: 'B. Bickel et al., “Processing and editing of faces using a measurement-based skin reflectance model,” presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, 2006.' ista: 'Bickel B, Weyrich T, Matusik W, Pfister H, Donner C, Tu C, Mcandless J, Lee J, Ngan A, Jensen H, Groß M. 2006. Processing and editing of faces using a measurement-based skin reflectance model. SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques.' mla: Bickel, Bernd, et al. Processing and Editing of Faces Using a Measurement-Based Skin Reflectance Model. ACM, 2006, doi:10.1145/1179849.1180059. short: B. Bickel, T. Weyrich, W. Matusik, H. Pfister, C. Donner, C. Tu, J. Mcandless, J. Lee, A. Ngan, H. Jensen, M. Groß, in:, ACM, 2006. conference: name: 'SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques' date_created: 2018-12-11T11:55:39Z date_published: 2006-07-01T00:00:00Z date_updated: 2021-01-12T06:55:15Z day: '01' doi: 10.1145/1179849.1180059 extern: 1 month: '07' publication_status: published publisher: ACM publist_id: '4945' quality_controlled: 0 status: public title: Processing and editing of faces using a measurement-based skin reflectance model type: conference year: '2006' ... --- _id: '2134' abstract: - lang: eng text: Predissociation of the N+2 C 2Σ+u(v') vibrational levels with v' ≥ 3 was observed via dispersed C 2Σ+u → X 2Σ+g fluorescence in the spectral range of 165–208 nm after resonant 1s−1π*(vr) excitation of N2 and its subsequent autoionization into the N+2 C state. This range is dominated by lines in atomic nitrogen, by overlapped C 2Σ+u(v') → X 2Σ+g(v'') vibrational band sequences with Δv = const and broad unresolved band systems (D, (2))2Πg(v') → A2Πu(v'') in the N+2 molecular ion. With very high fluorescence resolution of about 0.1 nm FWHM individual C 2Σ+u(v') → X 2Σ+g(v'') vibrational bands have been resolved. Calculation of the observed fluorescence spectra by taking into account predissociation and molecular rotation describes well the shape of both individual vibrational bands C 2Σ+u(v') → X 2Σ+g(v'') and the whole band system. acknowledgement: This work has been supported by the Deutsche Forschungsgemeinschaft (DFG) and by the Bundesministerium für Bildung und Forschung (BMBF) (Förderkennzeichen 05 ES3XBA/5 and IB/DLR RUS 02/037). The cooperation between the groups at the universities of Kaiserslautern and Rostov-on-Don was supported by the Alexander-von-Humboldt Foundation within the framework of an institute partnership with funds from BMBF author: - first_name: Arno full_name: Ehresmann, Arno last_name: Ehresmann - first_name: Lutz full_name: Werner, Lutz last_name: Werner - first_name: Stefan full_name: Klumpp, Stefan last_name: Klumpp - first_name: Ph full_name: Demekhin, Ph V last_name: Demekhin - first_name: Mikhail full_name: Mikhail Lemeshko id: 37CB05FA-F248-11E8-B48F-1D18A9856A87 last_name: Lemeshko orcid: 0000-0002-6990-7802 - first_name: V. full_name: Sukhorukov, V. L last_name: Sukhorukov - first_name: Karl full_name: Schartner, Karl H last_name: Schartner - first_name: Hans full_name: Schmoranzer, Hans P last_name: Schmoranzer citation: ama: 'Ehresmann A, Werner L, Klumpp S, et al. Predissociation of the N+2(C 2Σ+u) state observed via C 2Σ+u → X 2Σ+g fluorescence after resonant 1s−1π* excitation of N2 molecule. Journal of Physics B: Atomic, Molecular and Optical Physics. 2006;39(6):L119-L126. doi:10.1088/0953-4075/39/6/L03' apa: 'Ehresmann, A., Werner, L., Klumpp, S., Demekhin, P., Lemeshko, M., Sukhorukov, V., … Schmoranzer, H. (2006). Predissociation of the N+2(C 2Σ+u) state observed via C 2Σ+u → X 2Σ+g fluorescence after resonant 1s−1π* excitation of N2 molecule. Journal of Physics B: Atomic, Molecular and Optical Physics. IOP Publishing Ltd. https://doi.org/10.1088/0953-4075/39/6/L03' chicago: 'Ehresmann, Arno, Lutz Werner, Stefan Klumpp, Ph Demekhin, Mikhail Lemeshko, V. Sukhorukov, Karl Schartner, and Hans Schmoranzer. “Predissociation of the N+2(C 2Σ+u) State Observed via C 2Σ+u → X 2Σ+g Fluorescence after Resonant 1s−1π* Excitation of N2 Molecule.” Journal of Physics B: Atomic, Molecular and Optical Physics. IOP Publishing Ltd., 2006. https://doi.org/10.1088/0953-4075/39/6/L03.' ieee: 'A. Ehresmann et al., “Predissociation of the N+2(C 2Σ+u) state observed via C 2Σ+u → X 2Σ+g fluorescence after resonant 1s−1π* excitation of N2 molecule,” Journal of Physics B: Atomic, Molecular and Optical Physics, vol. 39, no. 6. IOP Publishing Ltd., pp. L119–L126, 2006.' ista: 'Ehresmann A, Werner L, Klumpp S, Demekhin P, Lemeshko M, Sukhorukov V, Schartner K, Schmoranzer H. 2006. Predissociation of the N+2(C 2Σ+u) state observed via C 2Σ+u → X 2Σ+g fluorescence after resonant 1s−1π* excitation of N2 molecule. Journal of Physics B: Atomic, Molecular and Optical Physics. 39(6), L119–L126.' mla: 'Ehresmann, Arno, et al. “Predissociation of the N+2(C 2Σ+u) State Observed via C 2Σ+u → X 2Σ+g Fluorescence after Resonant 1s−1π* Excitation of N2 Molecule.” Journal of Physics B: Atomic, Molecular and Optical Physics, vol. 39, no. 6, IOP Publishing Ltd., 2006, pp. L119–26, doi:10.1088/0953-4075/39/6/L03.' short: 'A. Ehresmann, L. Werner, S. Klumpp, P. Demekhin, M. Lemeshko, V. Sukhorukov, K. Schartner, H. Schmoranzer, Journal of Physics B: Atomic, Molecular and Optical Physics 39 (2006) L119–L126.' date_created: 2018-12-11T11:55:54Z date_published: 2006-03-28T00:00:00Z date_updated: 2021-01-12T06:55:31Z day: '28' doi: 10.1088/0953-4075/39/6/L03 extern: 1 intvolume: ' 39' issue: '6' month: '03' page: L119 - L126 publication: 'Journal of Physics B: Atomic, Molecular and Optical Physics' publication_status: published publisher: IOP Publishing Ltd. publist_id: '4900' quality_controlled: 0 status: public title: Predissociation of the N+2(C 2Σ+u) state observed via C 2Σ+u → X 2Σ+g fluorescence after resonant 1s−1π* excitation of N2 molecule type: journal_article volume: 39 year: '2006' ... --- _id: '213' abstract: - lang: eng text: For any integers d,n ≥2, let X ⊂ Pn be a non‐singular hypersurface of degree d that is defined over the rational numbers. The main result in this paper is a proof that the number of rational points on X which have height at most B is O(Bn − 1 + ɛ), for any ɛ > 0. The implied constant in this estimate depends at most upon d, ɛ and n. 2000 Mathematics Subject Classification 11D45 (primary), 11G35, 14G05 (secondary). acknowledgement: EPSRC grant number GR/R93155/01 author: - first_name: Timothy D full_name: Timothy Browning id: 35827D50-F248-11E8-B48F-1D18A9856A87 last_name: Browning orcid: 0000-0002-8314-0177 - first_name: Roger full_name: Heath-Brown, Roger last_name: Heath Brown - first_name: Jason full_name: Starr, Jason M last_name: Starr citation: ama: Browning TD, Heath Brown R, Starr J. The density of rational points on non-singular hypersurfaces, II. Proceedings of the London Mathematical Society. 2006;93(2):273-303. doi:https://doi.org/10.1112/S0024611506015784 apa: Browning, T. D., Heath Brown, R., & Starr, J. (2006). The density of rational points on non-singular hypersurfaces, II. Proceedings of the London Mathematical Society. John Wiley and Sons Ltd. https://doi.org/10.1112/S0024611506015784 chicago: Browning, Timothy D, Roger Heath Brown, and Jason Starr. “The Density of Rational Points on Non-Singular Hypersurfaces, II.” Proceedings of the London Mathematical Society. John Wiley and Sons Ltd, 2006. https://doi.org/10.1112/S0024611506015784. ieee: T. D. Browning, R. Heath Brown, and J. Starr, “The density of rational points on non-singular hypersurfaces, II,” Proceedings of the London Mathematical Society, vol. 93, no. 2. John Wiley and Sons Ltd, pp. 273–303, 2006. ista: Browning TD, Heath Brown R, Starr J. 2006. The density of rational points on non-singular hypersurfaces, II. Proceedings of the London Mathematical Society. 93(2), 273–303. mla: Browning, Timothy D., et al. “The Density of Rational Points on Non-Singular Hypersurfaces, II.” Proceedings of the London Mathematical Society, vol. 93, no. 2, John Wiley and Sons Ltd, 2006, pp. 273–303, doi:https://doi.org/10.1112/S0024611506015784. short: T.D. Browning, R. Heath Brown, J. Starr, Proceedings of the London Mathematical Society 93 (2006) 273–303. date_created: 2018-12-11T11:45:14Z date_published: 2006-09-01T00:00:00Z date_updated: 2021-01-12T06:55:29Z day: '01' doi: https://doi.org/10.1112/S0024611506015784 extern: 1 intvolume: ' 93' issue: '2' month: '09' page: 273 - 303 publication: Proceedings of the London Mathematical Society publication_status: published publisher: John Wiley and Sons Ltd publist_id: '7698' quality_controlled: 0 status: public title: The density of rational points on non-singular hypersurfaces, II type: journal_article volume: 93 year: '2006' ... --- _id: '2144' abstract: - lang: eng text: 'Temperature dependent preedge and extended x-ray absorption fine structure measurements at the Zr K edge for the perovskite-type zirconates Pb Zr0.515 Ti0.485 O3 (PZT), PbZr O3 (PZ), and BaZr O3 are performed. To carry out a more accurate study of the weak reconstruction of the local atomic structure we employed a combination of two techniques: (i) analysis of the preedge fine structure, and (ii) analysis of the Fourier transform of the difference between χ (k) functions obtained at different temperatures. A detailed investigation of local atomic structure in the cubic phase for all the crystals is also performed. It is shown that neither the displacive nor the order-disorder model can describe correctly the changes of local atomic structure during phase transitions in PZ and PZT. A spherical model describing the local atomic structure of perovskite-type crystals suffering structural phase transitions is proposed.' acknowledgement: The studies were supported by the Russian Ministry of Science and Education Grant No. R662. E.N. acknowledges partial support from the French Government *CNOUS. author: - first_name: Rostislav full_name: Vedrinskiǐ, Rostislav V last_name: Vedrinskiǐ - first_name: Elena full_name: Nazarenko, Elena S last_name: Nazarenko - first_name: Mikhail full_name: Mikhail Lemeshko id: 37CB05FA-F248-11E8-B48F-1D18A9856A87 last_name: Lemeshko orcid: 0000-0002-6990-7802 - first_name: Vivian full_name: Nassif, Vivian M last_name: Nassif - first_name: Olivier full_name: Proux, Olivier last_name: Proux - first_name: Alexander full_name: Novakovich, Alexander A last_name: Novakovich - first_name: Yves full_name: Joly, Yves last_name: Joly citation: ama: Vedrinskiǐ R, Nazarenko E, Lemeshko M, et al. Temperature dependent XAFS studies of local atomic structure of the perovskite-type zirconates. Physical Review B - Condensed Matter and Materials Physics. 2006;73(13). doi:10.1103/PhysRevB.73.134109 apa: Vedrinskiǐ, R., Nazarenko, E., Lemeshko, M., Nassif, V., Proux, O., Novakovich, A., & Joly, Y. (2006). Temperature dependent XAFS studies of local atomic structure of the perovskite-type zirconates. Physical Review B - Condensed Matter and Materials Physics. American Physical Society. https://doi.org/10.1103/PhysRevB.73.134109 chicago: Vedrinskiǐ, Rostislav, Elena Nazarenko, Mikhail Lemeshko, Vivian Nassif, Olivier Proux, Alexander Novakovich, and Yves Joly. “Temperature Dependent XAFS Studies of Local Atomic Structure of the Perovskite-Type Zirconates.” Physical Review B - Condensed Matter and Materials Physics. American Physical Society, 2006. https://doi.org/10.1103/PhysRevB.73.134109. ieee: R. Vedrinskiǐ et al., “Temperature dependent XAFS studies of local atomic structure of the perovskite-type zirconates,” Physical Review B - Condensed Matter and Materials Physics, vol. 73, no. 13. American Physical Society, 2006. ista: Vedrinskiǐ R, Nazarenko E, Lemeshko M, Nassif V, Proux O, Novakovich A, Joly Y. 2006. Temperature dependent XAFS studies of local atomic structure of the perovskite-type zirconates. Physical Review B - Condensed Matter and Materials Physics. 73(13). mla: Vedrinskiǐ, Rostislav, et al. “Temperature Dependent XAFS Studies of Local Atomic Structure of the Perovskite-Type Zirconates.” Physical Review B - Condensed Matter and Materials Physics, vol. 73, no. 13, American Physical Society, 2006, doi:10.1103/PhysRevB.73.134109. short: R. Vedrinskiǐ, E. Nazarenko, M. Lemeshko, V. Nassif, O. Proux, A. Novakovich, Y. Joly, Physical Review B - Condensed Matter and Materials Physics 73 (2006). date_created: 2018-12-11T11:55:58Z date_published: 2006-04-17T00:00:00Z date_updated: 2021-01-12T06:55:34Z day: '17' doi: 10.1103/PhysRevB.73.134109 extern: 1 intvolume: ' 73' issue: '13' month: '04' publication: Physical Review B - Condensed Matter and Materials Physics publication_status: published publisher: American Physical Society publist_id: '4881' quality_controlled: 0 status: public title: Temperature dependent XAFS studies of local atomic structure of the perovskite-type zirconates type: journal_article volume: 73 year: '2006' ... --- _id: '2142' abstract: - lang: eng text: Fluorescence from fragments formed after the de-excitation of the N*2(1s−1π*) resonance has been measured in the spectral range of 135–190 nm. This range is dominated by lines in atomic nitrogen and lines formed by overlapping C2Σ+u(v') → X2Σ+g(v'') bands with Δv = const in the N+2 molecular ion which result from the spectator Auger decays of the N*2(1s−1π*(vr)) resonances. Ab initio calculations of the corresponding potential curves and transition probabilities showed that the observed irregular intensity dependence of the C2Σ+u(v') → X2Σ+g(v'')(Δv = const) fluorescence lines on the vibrational quantum number vr is due to transitions between vibrational levels during the reaction N2(v0 = 0)→ N*2(1s−1π*(vr)) Longrightarrow C2Σ+u(v') → X2Σ+g(v''). author: - first_name: Arno full_name: Ehresmann, Arno last_name: Ehresmann - first_name: Lutz full_name: Werner, Lutz last_name: Werner - first_name: Stefan full_name: Klumpp, Stefan last_name: Klumpp - first_name: S full_name: Lucht, S last_name: Lucht - first_name: Hans full_name: Schmoranzer, Hans P last_name: Schmoranzer - first_name: Sascha full_name: Mickat, Sascha last_name: Mickat - first_name: Rüdiger full_name: Schill, Rüdiger H last_name: Schill - first_name: Karl full_name: Schartner, Karl H last_name: Schartner - first_name: Philipp full_name: Demekhin, Philipp last_name: Demekhin - first_name: Mikhail full_name: Mikhail Lemeshko id: 37CB05FA-F248-11E8-B48F-1D18A9856A87 last_name: Lemeshko orcid: 0000-0002-6990-7802 - first_name: Victor full_name: Sukhorukov, Victor L last_name: Sukhorukov citation: ama: 'Ehresmann A, Werner L, Klumpp S, et al. Studying the N+2(C2Σ+u → X2Σ+g) fluorescence excited via the 1s−1π* resonance. Journal of Physics B: Atomic, Molecular and Optical Physics. 2006;39(2):283-304. doi:10.1088/0953-4075/39/2/006' apa: 'Ehresmann, A., Werner, L., Klumpp, S., Lucht, S., Schmoranzer, H., Mickat, S., … Sukhorukov, V. (2006). Studying the N+2(C2Σ+u → X2Σ+g) fluorescence excited via the 1s−1π* resonance. Journal of Physics B: Atomic, Molecular and Optical Physics. IOP Publishing Ltd. https://doi.org/10.1088/0953-4075/39/2/006' chicago: 'Ehresmann, Arno, Lutz Werner, Stefan Klumpp, S Lucht, Hans Schmoranzer, Sascha Mickat, Rüdiger Schill, et al. “Studying the N+2(C2Σ+u → X2Σ+g) Fluorescence Excited via the 1s−1π* Resonance.” Journal of Physics B: Atomic, Molecular and Optical Physics. IOP Publishing Ltd., 2006. https://doi.org/10.1088/0953-4075/39/2/006.' ieee: 'A. Ehresmann et al., “Studying the N+2(C2Σ+u → X2Σ+g) fluorescence excited via the 1s−1π* resonance,” Journal of Physics B: Atomic, Molecular and Optical Physics, vol. 39, no. 2. IOP Publishing Ltd., pp. 283–304, 2006.' ista: 'Ehresmann A, Werner L, Klumpp S, Lucht S, Schmoranzer H, Mickat S, Schill R, Schartner K, Demekhin P, Lemeshko M, Sukhorukov V. 2006. Studying the N+2(C2Σ+u → X2Σ+g) fluorescence excited via the 1s−1π* resonance. Journal of Physics B: Atomic, Molecular and Optical Physics. 39(2), 283–304.' mla: 'Ehresmann, Arno, et al. “Studying the N+2(C2Σ+u → X2Σ+g) Fluorescence Excited via the 1s−1π* Resonance.” Journal of Physics B: Atomic, Molecular and Optical Physics, vol. 39, no. 2, IOP Publishing Ltd., 2006, pp. 283–304, doi:10.1088/0953-4075/39/2/006.' short: 'A. Ehresmann, L. Werner, S. Klumpp, S. Lucht, H. Schmoranzer, S. Mickat, R. Schill, K. Schartner, P. Demekhin, M. Lemeshko, V. Sukhorukov, Journal of Physics B: Atomic, Molecular and Optical Physics 39 (2006) 283–304.' date_created: 2018-12-11T11:55:57Z date_published: 2006-01-28T00:00:00Z date_updated: 2021-01-12T06:55:34Z day: '28' doi: 10.1088/0953-4075/39/2/006 extern: 1 intvolume: ' 39' issue: '2' month: '01' page: 283 - 304 publication: 'Journal of Physics B: Atomic, Molecular and Optical Physics' publication_status: published publisher: IOP Publishing Ltd. publist_id: '4882' quality_controlled: 0 status: public title: Studying the N+2(C2Σ+u → X2Σ+g) fluorescence excited via the 1s−1π* resonance type: journal_article volume: 39 year: '2006' ... --- _id: '215' abstract: - lang: eng text: For any n≥3, let F ∈ Z[X0,...,Xn ] be a form of degree d *≥5 that defines a non-singular hypersurface X ⊂ Pn . The main result in this paper is a proof of the fact that the number N (F ; B) of Q-rational points on X which have height at most B satisfiesN (F ; B) = Od,ε,n (Bn −1+ε ), for any ε > 0. The implied constant in this estimate depends at most upon d, ε and n. New estimates are also obtained for the number of representations of a positive integer as the sum of three dth powers, and for the paucity of integer solutions to equal sums of like polynomials.* author: - first_name: Timothy D full_name: Timothy Browning id: 35827D50-F248-11E8-B48F-1D18A9856A87 last_name: Browning orcid: 0000-0002-8314-0177 - first_name: Roger full_name: Heath-Brown, Roger last_name: Heath Brown citation: ama: Browning TD, Heath Brown R. The density of rational points on non-singular hypersurfaces, I. Bulletin of the London Mathematical Society. 2006;38(3):401-410. doi:10.1112/S0024609305018412 apa: Browning, T. D., & Heath Brown, R. (2006). The density of rational points on non-singular hypersurfaces, I. Bulletin of the London Mathematical Society. Wiley-Blackwell. https://doi.org/10.1112/S0024609305018412 chicago: Browning, Timothy D, and Roger Heath Brown. “The Density of Rational Points on Non-Singular Hypersurfaces, I.” Bulletin of the London Mathematical Society. Wiley-Blackwell, 2006. https://doi.org/10.1112/S0024609305018412. ieee: T. D. Browning and R. Heath Brown, “The density of rational points on non-singular hypersurfaces, I,” Bulletin of the London Mathematical Society, vol. 38, no. 3. Wiley-Blackwell, pp. 401–410, 2006. ista: Browning TD, Heath Brown R. 2006. The density of rational points on non-singular hypersurfaces, I. Bulletin of the London Mathematical Society. 38(3), 401–410. mla: Browning, Timothy D., and Roger Heath Brown. “The Density of Rational Points on Non-Singular Hypersurfaces, I.” Bulletin of the London Mathematical Society, vol. 38, no. 3, Wiley-Blackwell, 2006, pp. 401–10, doi:10.1112/S0024609305018412. short: T.D. Browning, R. Heath Brown, Bulletin of the London Mathematical Society 38 (2006) 401–410. date_created: 2018-12-11T11:45:15Z date_published: 2006-12-23T00:00:00Z date_updated: 2021-01-12T06:55:36Z day: '23' doi: 10.1112/S0024609305018412 extern: 1 intvolume: ' 38' issue: '3' month: '12' page: 401 - 410 publication: Bulletin of the London Mathematical Society publication_status: published publisher: Wiley-Blackwell publist_id: '7697' quality_controlled: 0 status: public title: The density of rational points on non-singular hypersurfaces, I type: journal_article volume: 38 year: '2006' ... --- _id: '216' abstract: - lang: eng text: For any N ≥ 2, let Z ⊂ ℙN be a geometrically integral algebraic variety of degree d. This article is concerned with the number Nz(B) of ℚ-rational points on Z which have height at most B. For any ε > 0, we establish the estimate NZ(B) = O d,ε,N(Bdim Z+ε), provided that d ≥ 6. As indicated, the implied constant depends at most on d, ε, and N. author: - first_name: Timothy D full_name: Timothy Browning id: 35827D50-F248-11E8-B48F-1D18A9856A87 last_name: Browning orcid: 0000-0002-8314-0177 - first_name: Roger full_name: Heath-Brown, Roger last_name: Heath Brown - first_name: Per full_name: Salberger, Per last_name: Salberger citation: ama: Browning TD, Heath Brown R, Salberger P. Counting rational points on algebraic varieties. Duke Mathematical Journal. 2006;132(3):545-578. doi:10.1215/S0012-7094-06-13236-2 apa: Browning, T. D., Heath Brown, R., & Salberger, P. (2006). Counting rational points on algebraic varieties. Duke Mathematical Journal. Unknown. https://doi.org/10.1215/S0012-7094-06-13236-2 chicago: Browning, Timothy D, Roger Heath Brown, and Per Salberger. “Counting Rational Points on Algebraic Varieties.” Duke Mathematical Journal. Unknown, 2006. https://doi.org/10.1215/S0012-7094-06-13236-2. ieee: T. D. Browning, R. Heath Brown, and P. Salberger, “Counting rational points on algebraic varieties,” Duke Mathematical Journal, vol. 132, no. 3. Unknown, pp. 545–578, 2006. ista: Browning TD, Heath Brown R, Salberger P. 2006. Counting rational points on algebraic varieties. Duke Mathematical Journal. 132(3), 545–578. mla: Browning, Timothy D., et al. “Counting Rational Points on Algebraic Varieties.” Duke Mathematical Journal, vol. 132, no. 3, Unknown, 2006, pp. 545–78, doi:10.1215/S0012-7094-06-13236-2. short: T.D. Browning, R. Heath Brown, P. Salberger, Duke Mathematical Journal 132 (2006) 545–578. date_created: 2018-12-11T11:45:15Z date_published: 2006-04-15T00:00:00Z date_updated: 2021-01-12T06:55:41Z day: '15' doi: 10.1215/S0012-7094-06-13236-2 extern: 1 intvolume: ' 132' issue: '3' month: '04' page: 545 - 578 publication: Duke Mathematical Journal publication_status: published publisher: Unknown publist_id: '7696' quality_controlled: 0 status: public title: Counting rational points on algebraic varieties type: journal_article volume: 132 year: '2006' ... --- _id: '218' abstract: - lang: eng text: This paper is concerned with the average order of certain arithmetic functions, as they range over the values taken by binary forms. author: - first_name: Régis full_name: de la Bretèche, Régis last_name: De La Bretèche - first_name: Timothy D full_name: Timothy Browning id: 35827D50-F248-11E8-B48F-1D18A9856A87 last_name: Browning orcid: 0000-0002-8314-0177 citation: ama: De La Bretèche R, Browning TD. Sums of arithmetic functions over values of binary forms. Acta Arithmetica. 2006;125(3):291-304. doi:10.4064/aa125-3-6 apa: De La Bretèche, R., & Browning, T. D. (2006). Sums of arithmetic functions over values of binary forms. Acta Arithmetica. Instytut Matematyczny. https://doi.org/10.4064/aa125-3-6 chicago: De La Bretèche, Régis, and Timothy D Browning. “Sums of Arithmetic Functions over Values of Binary Forms.” Acta Arithmetica. Instytut Matematyczny, 2006. https://doi.org/10.4064/aa125-3-6. ieee: R. De La Bretèche and T. D. Browning, “Sums of arithmetic functions over values of binary forms,” Acta Arithmetica, vol. 125, no. 3. Instytut Matematyczny, pp. 291–304, 2006. ista: De La Bretèche R, Browning TD. 2006. Sums of arithmetic functions over values of binary forms. Acta Arithmetica. 125(3), 291–304. mla: De La Bretèche, Régis, and Timothy D. Browning. “Sums of Arithmetic Functions over Values of Binary Forms.” Acta Arithmetica, vol. 125, no. 3, Instytut Matematyczny, 2006, pp. 291–304, doi:10.4064/aa125-3-6. short: R. De La Bretèche, T.D. Browning, Acta Arithmetica 125 (2006) 291–304. date_created: 2018-12-11T11:45:16Z date_published: 2006-01-01T00:00:00Z date_updated: 2021-01-12T06:55:49Z day: '01' doi: 10.4064/aa125-3-6 extern: 1 intvolume: ' 125' issue: '3' month: '01' page: 291 - 304 publication: Acta Arithmetica publication_status: published publisher: Instytut Matematyczny publist_id: '7694' quality_controlled: 0 status: public title: Sums of arithmetic functions over values of binary forms type: journal_article volume: 125 year: '2006' ... --- _id: '2333' alternative_title: - Contemporary Mathematics author: - first_name: Élliott full_name: Lieb, Élliott H last_name: Lieb - first_name: Robert full_name: Robert Seiringer id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 - first_name: Jan full_name: Solovej, Jan P last_name: Solovej citation: ama: 'Lieb É, Seiringer R, Solovej J. Ground-state energy of a dilute Fermi gas. In: Vol 412. American Mathematical Society; 2006:239-248. doi:10.1090/conm/412' apa: Lieb, É., Seiringer, R., & Solovej, J. (2006). Ground-state energy of a dilute Fermi gas (Vol. 412, pp. 239–248). Presented at the Differential Equations and Mathematical Physics, American Mathematical Society. https://doi.org/10.1090/conm/412 chicago: Lieb, Élliott, Robert Seiringer, and Jan Solovej. “Ground-State Energy of a Dilute Fermi Gas,” 412:239–48. American Mathematical Society, 2006. https://doi.org/10.1090/conm/412. ieee: É. Lieb, R. Seiringer, and J. Solovej, “Ground-state energy of a dilute Fermi gas,” presented at the Differential Equations and Mathematical Physics, 2006, vol. 412, pp. 239–248. ista: Lieb É, Seiringer R, Solovej J. 2006. Ground-state energy of a dilute Fermi gas. Differential Equations and Mathematical Physics, Contemporary Mathematics, vol. 412, 239–248. mla: Lieb, Élliott, et al. Ground-State Energy of a Dilute Fermi Gas. Vol. 412, American Mathematical Society, 2006, pp. 239–48, doi:10.1090/conm/412. short: É. Lieb, R. Seiringer, J. Solovej, in:, American Mathematical Society, 2006, pp. 239–248. conference: name: Differential Equations and Mathematical Physics date_created: 2018-12-11T11:57:03Z date_published: 2006-01-01T00:00:00Z date_updated: 2021-01-12T06:56:51Z day: '01' doi: 10.1090/conm/412 extern: 1 intvolume: ' 412' main_file_link: - open_access: '1' url: http://arxiv.org/abs/math-ph/0507049 month: '01' oa: 1 page: 239 - 248 publication_status: published publisher: American Mathematical Society publist_id: '4593' quality_controlled: 0 status: public title: Ground-state energy of a dilute Fermi gas type: conference volume: 412 year: '2006' ... --- _id: '2334' author: - first_name: Robert full_name: Robert Seiringer id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 - first_name: Élliott full_name: Lieb, Élliott H last_name: Lieb - first_name: Jakob full_name: Yngvason, Jakob last_name: Yngvason citation: ama: 'Seiringer R, Lieb É, Yngvason J. One-dimensional behavior of dilute, trapped Bose gases in traps. In: Zambrini J, ed. World Scientific Publishing; 2006. doi:10.1007/s00220-003-0993-3' apa: 'Seiringer, R., Lieb, É., & Yngvason, J. (2006). One-dimensional behavior of dilute, trapped Bose gases in traps. In J. Zambrini (Ed.). Presented at the ICMP: International Congress on Mathematical Physics, World Scientific Publishing. https://doi.org/10.1007/s00220-003-0993-3' chicago: Seiringer, Robert, Élliott Lieb, and Jakob Yngvason. “One-Dimensional Behavior of Dilute, Trapped Bose Gases in Traps.” edited by Jean Zambrini. World Scientific Publishing, 2006. https://doi.org/10.1007/s00220-003-0993-3. ieee: 'R. Seiringer, É. Lieb, and J. Yngvason, “One-dimensional behavior of dilute, trapped Bose gases in traps,” presented at the ICMP: International Congress on Mathematical Physics, 2006.' ista: 'Seiringer R, Lieb É, Yngvason J. 2006. One-dimensional behavior of dilute, trapped Bose gases in traps. ICMP: International Congress on Mathematical Physics.' mla: Seiringer, Robert, et al. One-Dimensional Behavior of Dilute, Trapped Bose Gases in Traps. Edited by Jean Zambrini, World Scientific Publishing, 2006, doi:10.1007/s00220-003-0993-3. short: R. Seiringer, É. Lieb, J. Yngvason, in:, J. Zambrini (Ed.), World Scientific Publishing, 2006. conference: name: 'ICMP: International Congress on Mathematical Physics' date_created: 2018-12-11T11:57:03Z date_published: 2006-03-07T00:00:00Z date_updated: 2021-01-12T06:56:51Z day: '07' doi: 10.1007/s00220-003-0993-3 editor: - first_name: Jean full_name: Zambrini, Jean-Claude last_name: Zambrini extern: 1 main_file_link: - open_access: '1' url: http://arxiv.org/abs/math-ph/0305025 month: '03' oa: 1 publication_status: published publisher: World Scientific Publishing publist_id: '4592' quality_controlled: 0 status: public title: One-dimensional behavior of dilute, trapped Bose gases in traps type: conference year: '2006' ... --- _id: '2363' abstract: - lang: eng text: ' We prove that the Gross-Pitaevskii equation correctly describes the ground state energy and corresponding one-particle density matrix of rotating, dilute, trapped Bose gases with repulsive two-body interactions. We also show that there is 100% Bose-Einstein condensation. While a proof that the GP equation correctly describes non-rotating or slowly rotating gases was known for some time, the rapidly rotating case was unclear because the Bose (i.e., symmetric) ground state is not the lowest eigenstate of the Hamiltonian in this case. We have been able to overcome this difficulty with the aid of coherent states. Our proof also conceptually simplifies the previous proof for the slowly rotating case. In the case of axially symmetric traps, our results show that the appearance of quantized vortices causes spontaneous symmetry breaking in the ground state. ' author: - first_name: Élliott full_name: Lieb, Élliott H last_name: Lieb - first_name: Robert full_name: Robert Seiringer id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 citation: ama: Lieb É, Seiringer R. Derivation of the Gross-Pitaevskii equation for rotating Bose gases. Communications in Mathematical Physics. 2006;264(2):505-537. doi:10.1007/s00220-006-1524-9 apa: Lieb, É., & Seiringer, R. (2006). Derivation of the Gross-Pitaevskii equation for rotating Bose gases. Communications in Mathematical Physics. Springer. https://doi.org/10.1007/s00220-006-1524-9 chicago: Lieb, Élliott, and Robert Seiringer. “Derivation of the Gross-Pitaevskii Equation for Rotating Bose Gases.” Communications in Mathematical Physics. Springer, 2006. https://doi.org/10.1007/s00220-006-1524-9. ieee: É. Lieb and R. Seiringer, “Derivation of the Gross-Pitaevskii equation for rotating Bose gases,” Communications in Mathematical Physics, vol. 264, no. 2. Springer, pp. 505–537, 2006. ista: Lieb É, Seiringer R. 2006. Derivation of the Gross-Pitaevskii equation for rotating Bose gases. Communications in Mathematical Physics. 264(2), 505–537. mla: Lieb, Élliott, and Robert Seiringer. “Derivation of the Gross-Pitaevskii Equation for Rotating Bose Gases.” Communications in Mathematical Physics, vol. 264, no. 2, Springer, 2006, pp. 505–37, doi:10.1007/s00220-006-1524-9. short: É. Lieb, R. Seiringer, Communications in Mathematical Physics 264 (2006) 505–537. date_created: 2018-12-11T11:57:13Z date_published: 2006-01-01T00:00:00Z date_updated: 2020-07-14T12:45:40Z day: '01' doi: 10.1007/s00220-006-1524-9 extern: 1 intvolume: ' 264' issue: '2' main_file_link: - open_access: '1' url: http://arxiv.org/abs/math-ph/0504042 month: '01' oa: 1 page: 505 - 537 publication: Communications in Mathematical Physics publication_status: published publisher: Springer publist_id: '4561' quality_controlled: 0 status: public title: Derivation of the Gross-Pitaevskii equation for rotating Bose gases type: review volume: 264 year: '2006' ... --- _id: '2364' abstract: - lang: eng text: We present an inequality that gives a lower bound on the expectation value of certain two-body interaction potentials in a general state on Fock space in terms of the corresponding expectation value for thermal equilibrium states of non-interacting systems and the difference in the free energy. This bound can be viewed as a rigorous version of first-order perturbation theory for many-body systems at positive temperature. As an application, we give a proof of the first two terms in a high density (and high temperature) expansion of the free energy of jellium with Coulomb interactions, both in the fermionic and bosonic case. For bosons, our method works above the transition temperature (for the non-interacting gas) for Bose-Einstein condensation. author: - first_name: Robert full_name: Robert Seiringer id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 citation: ama: Seiringer R. A correlation estimate for quantum many-body systems at positive temperature. Reviews in Mathematical Physics. 2006;18(3):233-253. doi:10.1142/S0129055X06002632 apa: Seiringer, R. (2006). A correlation estimate for quantum many-body systems at positive temperature. Reviews in Mathematical Physics. World Scientific Publishing. https://doi.org/10.1142/S0129055X06002632 chicago: Seiringer, Robert. “A Correlation Estimate for Quantum Many-Body Systems at Positive Temperature.” Reviews in Mathematical Physics. World Scientific Publishing, 2006. https://doi.org/10.1142/S0129055X06002632. ieee: R. Seiringer, “A correlation estimate for quantum many-body systems at positive temperature,” Reviews in Mathematical Physics, vol. 18, no. 3. World Scientific Publishing, pp. 233–253, 2006. ista: Seiringer R. 2006. A correlation estimate for quantum many-body systems at positive temperature. Reviews in Mathematical Physics. 18(3), 233–253. mla: Seiringer, Robert. “A Correlation Estimate for Quantum Many-Body Systems at Positive Temperature.” Reviews in Mathematical Physics, vol. 18, no. 3, World Scientific Publishing, 2006, pp. 233–53, doi:10.1142/S0129055X06002632. short: R. Seiringer, Reviews in Mathematical Physics 18 (2006) 233–253. date_created: 2018-12-11T11:57:14Z date_published: 2006-04-01T00:00:00Z date_updated: 2021-01-12T06:57:02Z day: '01' doi: 10.1142/S0129055X06002632 extern: 1 intvolume: ' 18' issue: '3' main_file_link: - open_access: '1' url: http://arxiv.org/abs/math-ph/0601051 month: '04' oa: 1 page: 233 - 253 publication: Reviews in Mathematical Physics publication_status: published publisher: World Scientific Publishing publist_id: '4562' quality_controlled: 0 status: public title: A correlation estimate for quantum many-body systems at positive temperature type: journal_article volume: 18 year: '2006' ... --- _id: '2365' abstract: - lang: eng text: We consider a gas of fermions with non-zero spin at temperature T and chemical potential μ. We show that if the range of the interparticle interaction is small compared to the mean particle distance, the thermodynamic pressure differs to leading order from the corresponding expression for non-interacting particles by a term proportional to the scattering length of the interparticle interaction. This is true for any repulsive interaction, including hard cores. The result is uniform in the temperature as long as T is of the same order as the Fermi temperature, or smaller. author: - first_name: Robert full_name: Robert Seiringer id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 citation: ama: Seiringer R. The thermodynamic pressure of a dilute fermi gas. Communications in Mathematical Physics. 2006;261(3):729-757. doi:10.1007/s00220-005-1433-3 apa: Seiringer, R. (2006). The thermodynamic pressure of a dilute fermi gas. Communications in Mathematical Physics. Springer. https://doi.org/10.1007/s00220-005-1433-3 chicago: Seiringer, Robert. “The Thermodynamic Pressure of a Dilute Fermi Gas.” Communications in Mathematical Physics. Springer, 2006. https://doi.org/10.1007/s00220-005-1433-3. ieee: R. Seiringer, “The thermodynamic pressure of a dilute fermi gas,” Communications in Mathematical Physics, vol. 261, no. 3. Springer, pp. 729–757, 2006. ista: Seiringer R. 2006. The thermodynamic pressure of a dilute fermi gas. Communications in Mathematical Physics. 261(3), 729–757. mla: Seiringer, Robert. “The Thermodynamic Pressure of a Dilute Fermi Gas.” Communications in Mathematical Physics, vol. 261, no. 3, Springer, 2006, pp. 729–57, doi:10.1007/s00220-005-1433-3. short: R. Seiringer, Communications in Mathematical Physics 261 (2006) 729–757. date_created: 2018-12-11T11:57:14Z date_published: 2006-02-01T00:00:00Z date_updated: 2021-01-12T06:57:02Z day: '01' doi: 10.1007/s00220-005-1433-3 extern: 1 intvolume: ' 261' issue: '3' main_file_link: - open_access: '1' url: http://arxiv.org/abs/math-ph/0412086 month: '02' oa: 1 page: 729 - 757 publication: Communications in Mathematical Physics publication_status: published publisher: Springer publist_id: '4563' quality_controlled: 0 status: public title: The thermodynamic pressure of a dilute fermi gas type: journal_article volume: 261 year: '2006' ... --- _id: '2366' abstract: - lang: eng text: Inequalities are derived for power sums of the real part and the modulus of the eigenvalues of a Schrödinger operator with a complex-valued potential. author: - first_name: Rupert full_name: Frank, Rupert L last_name: Frank - first_name: Ari full_name: Laptev, Ari last_name: Laptev - first_name: Élliott full_name: Lieb, Élliott H last_name: Lieb - first_name: Robert full_name: Robert Seiringer id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 citation: ama: Frank R, Laptev A, Lieb É, Seiringer R. Lieb-Thirring inequalities for Schrödinger operators with complex-valued potentials. Letters in Mathematical Physics. 2006;77(3):309-316. doi:10.1007/s11005-006-0095-1 apa: Frank, R., Laptev, A., Lieb, É., & Seiringer, R. (2006). Lieb-Thirring inequalities for Schrödinger operators with complex-valued potentials. Letters in Mathematical Physics. Springer. https://doi.org/10.1007/s11005-006-0095-1 chicago: Frank, Rupert, Ari Laptev, Élliott Lieb, and Robert Seiringer. “Lieb-Thirring Inequalities for Schrödinger Operators with Complex-Valued Potentials.” Letters in Mathematical Physics. Springer, 2006. https://doi.org/10.1007/s11005-006-0095-1. ieee: R. Frank, A. Laptev, É. Lieb, and R. Seiringer, “Lieb-Thirring inequalities for Schrödinger operators with complex-valued potentials,” Letters in Mathematical Physics, vol. 77, no. 3. Springer, pp. 309–316, 2006. ista: Frank R, Laptev A, Lieb É, Seiringer R. 2006. Lieb-Thirring inequalities for Schrödinger operators with complex-valued potentials. Letters in Mathematical Physics. 77(3), 309–316. mla: Frank, Rupert, et al. “Lieb-Thirring Inequalities for Schrödinger Operators with Complex-Valued Potentials.” Letters in Mathematical Physics, vol. 77, no. 3, Springer, 2006, pp. 309–16, doi:10.1007/s11005-006-0095-1. short: R. Frank, A. Laptev, É. Lieb, R. Seiringer, Letters in Mathematical Physics 77 (2006) 309–316. date_created: 2018-12-11T11:57:15Z date_published: 2006-09-01T00:00:00Z date_updated: 2021-01-12T06:57:03Z day: '01' doi: 10.1007/s11005-006-0095-1 extern: 1 intvolume: ' 77' issue: '3' main_file_link: - open_access: '1' url: http://arxiv.org/abs/math-ph/0605017 month: '09' oa: 1 page: 309 - 316 publication: Letters in Mathematical Physics publication_status: published publisher: Springer publist_id: '4560' quality_controlled: 0 status: public title: Lieb-Thirring inequalities for Schrödinger operators with complex-valued potentials type: journal_article volume: 77 year: '2006' ... --- _id: '2368' abstract: - lang: eng text: The recent experimental success in creating Bose-Einstein condensates of alkali atoms, honored by the Nobel prize awards in 2001 [1,5], led to renewed interest in the mathematical description of interacting Bose gases. alternative_title: - LNP author: - first_name: Robert full_name: Robert Seiringer id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 citation: ama: 'Seiringer R. Dilute, trapped Bose gases and Bose-Einstein condensation. In: Dereziński J, Siedentop H, eds. Large Coulomb Systems. Vol 695. Springer; 2006:249-274. doi:10.1007/3-540-32579-4_6' apa: Seiringer, R. (2006). Dilute, trapped Bose gases and Bose-Einstein condensation. In J. Dereziński & H. Siedentop (Eds.), Large Coulomb Systems (Vol. 695, pp. 249–274). Springer. https://doi.org/10.1007/3-540-32579-4_6 chicago: Seiringer, Robert. “Dilute, Trapped Bose Gases and Bose-Einstein Condensation.” In Large Coulomb Systems, edited by Jan Dereziński and Heinz Siedentop, 695:249–74. Springer, 2006. https://doi.org/10.1007/3-540-32579-4_6. ieee: R. Seiringer, “Dilute, trapped Bose gases and Bose-Einstein condensation,” in Large Coulomb Systems, vol. 695, J. Dereziński and H. Siedentop, Eds. Springer, 2006, pp. 249–274. ista: 'Seiringer R. 2006.Dilute, trapped Bose gases and Bose-Einstein condensation. In: Large Coulomb Systems. LNP, vol. 695, 249–274.' mla: Seiringer, Robert. “Dilute, Trapped Bose Gases and Bose-Einstein Condensation.” Large Coulomb Systems, edited by Jan Dereziński and Heinz Siedentop, vol. 695, Springer, 2006, pp. 249–74, doi:10.1007/3-540-32579-4_6. short: R. Seiringer, in:, J. Dereziński, H. Siedentop (Eds.), Large Coulomb Systems, Springer, 2006, pp. 249–274. date_created: 2018-12-11T11:57:15Z date_published: 2006-01-01T00:00:00Z date_updated: 2021-01-12T06:57:03Z day: '01' doi: 10.1007/3-540-32579-4_6 editor: - first_name: Jan full_name: Dereziński, Jan last_name: Dereziński - first_name: Heinz full_name: Siedentop, Heinz last_name: Siedentop extern: 1 intvolume: ' 695' month: '01' page: 249 - 274 publication: Large Coulomb Systems publication_status: published publisher: Springer publist_id: '4558' quality_controlled: 0 status: public title: Dilute, trapped Bose gases and Bose-Einstein condensation type: book_chapter volume: 695 year: '2006' ... --- _id: '2369' abstract: - lang: eng text: One of the most remarkable recent developments in the study of ultracold Bose gases is the observation of a reversible transition from a Bose Einstein condensate to a state composed of localized atoms as the strength of a periodic, optical trapping potential is varied. In [1] a model of this phenomenon has been analyzed rigorously. The gas is a hard core lattice gas and the optical lattice is modeled by a periodic potential of strength λ. For small λ and temperature Bose- Einstein condensation (BEC) is proved to occur, while at large λ BEC disappears, even in the ground state, which is a Mott-insulator state with a characteristic gap. The inter-particle interaction is essential for this effect. This contribution gives a pedagogical survey of these results. alternative_title: - LNP author: - first_name: Michael full_name: Aizenman, Michael last_name: Aizenman - first_name: Élliott full_name: Lieb, Élliott H last_name: Lieb - first_name: Robert full_name: Robert Seiringer id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 - first_name: Jan full_name: Solovej, Jan P last_name: Solovej - first_name: Jakob full_name: Yngvason, Jakob last_name: Yngvason citation: ama: 'Aizenman M, Lieb É, Seiringer R, Solovej J, Yngvason J. Bose-Einstein condensation as a quantum phase transition in an optical lattice. In: Asch J, Joye A, eds. Mathematical Physics of Quantum Mechanics. Vol 690. Springer; 2006:199-215. doi:10.1007/b11573432' apa: Aizenman, M., Lieb, É., Seiringer, R., Solovej, J., & Yngvason, J. (2006). Bose-Einstein condensation as a quantum phase transition in an optical lattice. In J. Asch & A. Joye (Eds.), Mathematical Physics of Quantum Mechanics (Vol. 690, pp. 199–215). Springer. https://doi.org/10.1007/b11573432 chicago: Aizenman, Michael, Élliott Lieb, Robert Seiringer, Jan Solovej, and Jakob Yngvason. “Bose-Einstein Condensation as a Quantum Phase Transition in an Optical Lattice.” In Mathematical Physics of Quantum Mechanics, edited by Joachim Asch and Alain Joye, 690:199–215. Springer, 2006. https://doi.org/10.1007/b11573432. ieee: M. Aizenman, É. Lieb, R. Seiringer, J. Solovej, and J. Yngvason, “Bose-Einstein condensation as a quantum phase transition in an optical lattice,” in Mathematical Physics of Quantum Mechanics, vol. 690, J. Asch and A. Joye, Eds. Springer, 2006, pp. 199–215. ista: 'Aizenman M, Lieb É, Seiringer R, Solovej J, Yngvason J. 2006.Bose-Einstein condensation as a quantum phase transition in an optical lattice. In: Mathematical Physics of Quantum Mechanics. LNP, vol. 690, 199–215.' mla: Aizenman, Michael, et al. “Bose-Einstein Condensation as a Quantum Phase Transition in an Optical Lattice.” Mathematical Physics of Quantum Mechanics, edited by Joachim Asch and Alain Joye, vol. 690, Springer, 2006, pp. 199–215, doi:10.1007/b11573432. short: M. Aizenman, É. Lieb, R. Seiringer, J. Solovej, J. Yngvason, in:, J. Asch, A. Joye (Eds.), Mathematical Physics of Quantum Mechanics, Springer, 2006, pp. 199–215. date_created: 2018-12-11T11:57:16Z date_published: 2006-01-01T00:00:00Z date_updated: 2021-01-12T06:57:04Z day: '01' doi: 10.1007/b11573432 editor: - first_name: Joachim full_name: Asch, Joachim last_name: Asch - first_name: Alain full_name: Joye, Alain last_name: Joye extern: 1 intvolume: ' 690' main_file_link: - open_access: '1' url: http://arxiv.org/abs/cond-mat/0412034 month: '01' oa: 1 page: 199 - 215 publication: Mathematical Physics of Quantum Mechanics publication_status: published publisher: Springer publist_id: '4559' quality_controlled: 0 status: public title: Bose-Einstein condensation as a quantum phase transition in an optical lattice type: book_chapter volume: 690 year: '2006' ... --- _id: '2416' alternative_title: - Algorithms and Combinatorics author: - first_name: Jørgen full_name: Bang-Jensen, Jørgen last_name: Bang Jensen - first_name: Bruce full_name: Reed, Bruce last_name: Reed - first_name: Bruce full_name: Schacht, Bruce last_name: Schacht - first_name: Robert full_name: Šámal, Robert last_name: Šámal - first_name: Bjarne full_name: Toft, Bjarne last_name: Toft - first_name: Uli full_name: Uli Wagner id: 36690CA2-F248-11E8-B48F-1D18A9856A87 last_name: Wagner orcid: 0000-0002-1494-0568 citation: ama: 'Bang Jensen J, Reed B, Schacht B, Šámal R, Toft B, Wagner U. On six problems posed by Jarik Nešetřil. In: Topics in Discrete Mathematics. Vol 26. Springer; 2006:613-627. doi:10.1007/3-540-33700-8_30' apa: Bang Jensen, J., Reed, B., Schacht, B., Šámal, R., Toft, B., & Wagner, U. (2006). On six problems posed by Jarik Nešetřil. In Topics in Discrete Mathematics (Vol. 26, pp. 613–627). Springer. https://doi.org/10.1007/3-540-33700-8_30 chicago: Bang Jensen, Jørgen, Bruce Reed, Bruce Schacht, Robert Šámal, Bjarne Toft, and Uli Wagner. “On Six Problems Posed by Jarik Nešetřil.” In Topics in Discrete Mathematics, 26:613–27. Springer, 2006. https://doi.org/10.1007/3-540-33700-8_30. ieee: J. Bang Jensen, B. Reed, B. Schacht, R. Šámal, B. Toft, and U. Wagner, “On six problems posed by Jarik Nešetřil,” in Topics in Discrete Mathematics, vol. 26, Springer, 2006, pp. 613–627. ista: 'Bang Jensen J, Reed B, Schacht B, Šámal R, Toft B, Wagner U. 2006.On six problems posed by Jarik Nešetřil. In: Topics in Discrete Mathematics. Algorithms and Combinatorics, vol. 26, 613–627.' mla: Bang Jensen, Jørgen, et al. “On Six Problems Posed by Jarik Nešetřil.” Topics in Discrete Mathematics, vol. 26, Springer, 2006, pp. 613–27, doi:10.1007/3-540-33700-8_30. short: J. Bang Jensen, B. Reed, B. Schacht, R. Šámal, B. Toft, U. Wagner, in:, Topics in Discrete Mathematics, Springer, 2006, pp. 613–627. date_created: 2018-12-11T11:57:32Z date_published: 2006-01-01T00:00:00Z date_updated: 2021-01-12T06:57:21Z day: '01' doi: 10.1007/3-540-33700-8_30 extern: 1 intvolume: ' 26' month: '01' page: 613 - 627 publication: Topics in Discrete Mathematics publication_status: published publisher: Springer publist_id: '4509' quality_controlled: 0 status: public title: On six problems posed by Jarik Nešetřil type: book_chapter volume: 26 year: '2006' ... --- _id: '2430' abstract: - lang: eng text: We consider an online version of the conflict-free coloring of a set of points on the line, where each newly inserted point must be assigned a color upon insertion, and at all times the coloring has to be conflict-free, in the sense that in every interval I there is a color that appears exactly once in I. We present deterministic and randomized algorithms for achieving this goal, and analyze their performance, that is, the maximum number of colors that they need to use, as a function of the number n of inserted points. We first show that a natural and simple (deterministic) approach may perform rather poorly, requiring Ω(√̃) colors in the worst case. We then derive two efficient variants of this simple algorithm. The first is deterministic and uses O(log 2 n) colors, and the second is randomized and uses O(log n) colors with high probability. We also show that the O(log 2 n) bound on the number of colors used by our deterministic algorithm is tight on the worst case. We also analyze the performance of the simplest proposed algorithm when the points are inserted in a random order and present an incomplete analysis that indicates that, with high probability, it uses only O(log n) colors. Finally, we show that in the extension of this problem to two dimensions, where the relevant ranges are disks, n colors may be required in the worst case. author: - first_name: Ke full_name: Chent, Ke last_name: Chent - first_name: Amos full_name: Fiat, Amos last_name: Fiat - first_name: Haim full_name: Kaplan, Haim last_name: Kaplan - first_name: Meital full_name: Levy, Meital B last_name: Levy - first_name: Jiří full_name: Matoušek, Jiří last_name: Matoušek - first_name: Elchanan full_name: Mossel, Elchanan last_name: Mossel - first_name: János full_name: Pach, János last_name: Pach - first_name: Micha full_name: Sharir, Micha last_name: Sharir - first_name: Shakhar full_name: Smorodinsky, Shakhar last_name: Smorodinsky - first_name: Uli full_name: Uli Wagner id: 36690CA2-F248-11E8-B48F-1D18A9856A87 last_name: Wagner orcid: 0000-0002-1494-0568 - first_name: Emo full_name: Welzl, Emo last_name: Welzl citation: ama: Chent K, Fiat A, Kaplan H, et al. Online conflict-free coloring for intervals. SIAM Journal on Computing. 2006;36(5):1342-1359. doi:10.1137/S0097539704446682 apa: Chent, K., Fiat, A., Kaplan, H., Levy, M., Matoušek, J., Mossel, E., … Welzl, E. (2006). Online conflict-free coloring for intervals. SIAM Journal on Computing. SIAM. https://doi.org/10.1137/S0097539704446682 chicago: Chent, Ke, Amos Fiat, Haim Kaplan, Meital Levy, Jiří Matoušek, Elchanan Mossel, János Pach, et al. “Online Conflict-Free Coloring for Intervals.” SIAM Journal on Computing. SIAM, 2006. https://doi.org/10.1137/S0097539704446682. ieee: K. Chent et al., “Online conflict-free coloring for intervals,” SIAM Journal on Computing, vol. 36, no. 5. SIAM, pp. 1342–1359, 2006. ista: Chent K, Fiat A, Kaplan H, Levy M, Matoušek J, Mossel E, Pach J, Sharir M, Smorodinsky S, Wagner U, Welzl E. 2006. Online conflict-free coloring for intervals. SIAM Journal on Computing. 36(5), 1342–1359. mla: Chent, Ke, et al. “Online Conflict-Free Coloring for Intervals.” SIAM Journal on Computing, vol. 36, no. 5, SIAM, 2006, pp. 1342–59, doi:10.1137/S0097539704446682. short: K. Chent, A. Fiat, H. Kaplan, M. Levy, J. Matoušek, E. Mossel, J. Pach, M. Sharir, S. Smorodinsky, U. Wagner, E. Welzl, SIAM Journal on Computing 36 (2006) 1342–1359. date_created: 2018-12-11T11:57:37Z date_published: 2006-01-01T00:00:00Z date_updated: 2021-01-12T06:57:26Z day: '01' doi: 10.1137/S0097539704446682 extern: 1 intvolume: ' 36' issue: '5' month: '01' page: 1342 - 1359 publication: SIAM Journal on Computing publication_status: published publisher: SIAM publist_id: '4490' quality_controlled: 0 status: public title: Online conflict-free coloring for intervals type: journal_article volume: 36 year: '2006' ... --- _id: '2431' abstract: - lang: eng text: We prove an upper bound, tight up to a factor of 2, for the number of vertices of level at most t in an arrangement of n halfspaces in R , for arbitrary n and d (in particular, the dimension d is not considered constant). This partially settles a conjecture of Eckhoff, Linhart, and Welzl. Up to the factor of 2, the result generalizes McMullen's Upper Bound Theorem for convex polytopes (the case ℓ = O) and extends a theorem of Linhart for the case d ≤ 4. Moreover, the bound sharpens asymptotic estimates obtained by Clarkson and Shor. The proof is based on the h-matrix of the arrangement (a generalization, introduced by Mulmuley, of the h-vector of a convex polytope). We show that bounding appropriate sums of entries of this matrix reduces to a lemma about quadrupels of sets with certain intersection properties, and we prove this lemma, up to a factor of 2, using tools from multilinear algebra. This extends an approach of Alon and Kalai, who used linear algebra methods for an alternative proof of the classical Upper Bound Theorem. The bounds for the entries of the h-matrix also imply bounds for the number of i-dimensional faces, i > 0, at level at most ℓ. Furthermore, we discuss a connection with crossing numbers of graphs that was one of the main motivations for investigating exact bounds that are valid for arbitrary dimensions. alternative_title: - IEEE Conference Proceedings author: - first_name: Uli full_name: Uli Wagner id: 36690CA2-F248-11E8-B48F-1D18A9856A87 last_name: Wagner orcid: 0000-0002-1494-0568 citation: ama: 'Wagner U. On a geometric generalization of the Upper Bound Theorem. In: IEEE; 2006:635-645. doi:10.1109/FOCS.2006.53' apa: 'Wagner, U. (2006). On a geometric generalization of the Upper Bound Theorem (pp. 635–645). Presented at the FOCS: Foundations of Computer Science, IEEE. https://doi.org/10.1109/FOCS.2006.53' chicago: Wagner, Uli. “On a Geometric Generalization of the Upper Bound Theorem,” 635–45. IEEE, 2006. https://doi.org/10.1109/FOCS.2006.53. ieee: 'U. Wagner, “On a geometric generalization of the Upper Bound Theorem,” presented at the FOCS: Foundations of Computer Science, 2006, pp. 635–645.' ista: 'Wagner U. 2006. On a geometric generalization of the Upper Bound Theorem. FOCS: Foundations of Computer Science, IEEE Conference Proceedings, , 635–645.' mla: Wagner, Uli. On a Geometric Generalization of the Upper Bound Theorem. IEEE, 2006, pp. 635–45, doi:10.1109/FOCS.2006.53. short: U. Wagner, in:, IEEE, 2006, pp. 635–645. conference: name: 'FOCS: Foundations of Computer Science' date_created: 2018-12-11T11:57:37Z date_published: 2006-06-08T00:00:00Z date_updated: 2021-01-12T06:57:27Z day: '08' doi: 10.1109/FOCS.2006.53 extern: 1 month: '06' page: 635 - 645 publication_status: published publisher: IEEE publist_id: '4489' quality_controlled: 0 status: public title: On a geometric generalization of the Upper Bound Theorem type: conference year: '2006' ... --- _id: '2429' abstract: - lang: eng text: 'We show, with an elementary proof, that the number of halving simplices in a set of n points in 4 in general position is O(n4-2/45). This improves the previous bound of O(n4-1/134). Our main new ingredient is a bound on the maximum number of halving simplices intersecting a fixed 2-plane. ' author: - first_name: Jiří full_name: Matoušek, Jiří last_name: Matoušek - first_name: Micha full_name: Sharir, Micha last_name: Sharir - first_name: Shakhar full_name: Smorodinsky, Shakhar last_name: Smorodinsky - first_name: Uli full_name: Uli Wagner id: 36690CA2-F248-11E8-B48F-1D18A9856A87 last_name: Wagner orcid: 0000-0002-1494-0568 citation: ama: Matoušek J, Sharir M, Smorodinsky S, Wagner U. K-sets in four dimensions. Discrete & Computational Geometry. 2006;35(2):177-191. doi:10.1007/s00454-005-1200-4 apa: Matoušek, J., Sharir, M., Smorodinsky, S., & Wagner, U. (2006). K-sets in four dimensions. Discrete & Computational Geometry. Springer. https://doi.org/10.1007/s00454-005-1200-4 chicago: Matoušek, Jiří, Micha Sharir, Shakhar Smorodinsky, and Uli Wagner. “K-Sets in Four Dimensions.” Discrete & Computational Geometry. Springer, 2006. https://doi.org/10.1007/s00454-005-1200-4. ieee: J. Matoušek, M. Sharir, S. Smorodinsky, and U. Wagner, “K-sets in four dimensions,” Discrete & Computational Geometry, vol. 35, no. 2. Springer, pp. 177–191, 2006. ista: Matoušek J, Sharir M, Smorodinsky S, Wagner U. 2006. K-sets in four dimensions. Discrete & Computational Geometry. 35(2), 177–191. mla: Matoušek, Jiří, et al. “K-Sets in Four Dimensions.” Discrete & Computational Geometry, vol. 35, no. 2, Springer, 2006, pp. 177–91, doi:10.1007/s00454-005-1200-4. short: J. Matoušek, M. Sharir, S. Smorodinsky, U. Wagner, Discrete & Computational Geometry 35 (2006) 177–191. date_created: 2018-12-11T11:57:37Z date_published: 2006-02-01T00:00:00Z date_updated: 2021-01-12T06:57:26Z day: '01' doi: 10.1007/s00454-005-1200-4 extern: 1 intvolume: ' 35' issue: '2' month: '02' page: 177 - 191 publication: Discrete & Computational Geometry publication_status: published publisher: Springer publist_id: '4495' quality_controlled: 0 status: public title: K-sets in four dimensions type: journal_article volume: 35 year: '2006' ... --- _id: '2659' abstract: - lang: eng text: Transmembrane AMPA receptor regulatory proteins (TARPs), including stargazin/γ-2, are associated with AMPA receptors and participate in their surface delivery and anchoring at the postsynaptic membrane. TARPs may also act as a positive modulator of the AMPA receptor ion channel function; however, little is known about other TARP members except for stargazin/γ-2. We examined the synaptic localization of stargazin/γ-2 and γ-8 by immunoelectron microscopy and biochemical analysis. The analysis of sodium dodecyl sulfate-digested freeze-fracture replica labeling revealed that stargazin/γ-2 was concentrated in the postsynaptic area, whereas γ-8 was distributed both in synaptic and extra-synaptic plasma membranes of the hippocampal neuron. When a synaptic plasma membrane-enriched brain fraction was treated with Triton X-100 and separated by sucrose density gradient ultracentrifugation, a large proportion of NMDA receptor and stargazin/γ-2 was accumulated in raft-enriched fractions, whereas AMPA receptor and γ-8 were distributed in both the raft-enriched fractions and other Triton-insoluble fractions. Phosphorylation of stargazin/γ-2 and γ-8 was regulated by different sets of kinases and phosphatases in cultured cortical neurons. These results suggested that stargazin/γ-2 and γ-8 have distinct roles in postsynaptic membranes under the regulation of different intracellular signaling pathways. author: - first_name: Mihoko full_name: Inamura, Mihoko last_name: Inamura - first_name: Makoto full_name: Itakura, Makoto last_name: Itakura - first_name: Hirotsugu full_name: Okamoto, Hirotsugu last_name: Okamoto - first_name: Sumio full_name: Hoka, Sumio last_name: Hoka - first_name: Akira full_name: Mizoguchi, Akira last_name: Mizoguchi - first_name: Yugo full_name: Fukazawa, Yugo last_name: Fukazawa - first_name: Ryuichi full_name: Ryuichi Shigemoto id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 - first_name: Saori full_name: Yamamori, Saori last_name: Yamamori - first_name: Masami full_name: Takahashi, Masami last_name: Takahashi citation: ama: Inamura M, Itakura M, Okamoto H, et al. Differential localization and regulation of stargazin-like protein, γ-8 and stargazin in the plasma membrane of hippocampal and cortical neurons. Neuroscience Research. 2006;55(1):45-53. doi:10.1016/j.neures.2006.01.004 apa: Inamura, M., Itakura, M., Okamoto, H., Hoka, S., Mizoguchi, A., Fukazawa, Y., … Takahashi, M. (2006). Differential localization and regulation of stargazin-like protein, γ-8 and stargazin in the plasma membrane of hippocampal and cortical neurons. Neuroscience Research. Elsevier. https://doi.org/10.1016/j.neures.2006.01.004 chicago: Inamura, Mihoko, Makoto Itakura, Hirotsugu Okamoto, Sumio Hoka, Akira Mizoguchi, Yugo Fukazawa, Ryuichi Shigemoto, Saori Yamamori, and Masami Takahashi. “ Differential Localization and Regulation of Stargazin-like Protein, γ-8 and Stargazin in the Plasma Membrane of Hippocampal and Cortical Neurons.” Neuroscience Research. Elsevier, 2006. https://doi.org/10.1016/j.neures.2006.01.004. ieee: M. Inamura et al., “ Differential localization and regulation of stargazin-like protein, γ-8 and stargazin in the plasma membrane of hippocampal and cortical neurons,” Neuroscience Research, vol. 55, no. 1. Elsevier, pp. 45–53, 2006. ista: Inamura M, Itakura M, Okamoto H, Hoka S, Mizoguchi A, Fukazawa Y, Shigemoto R, Yamamori S, Takahashi M. 2006. Differential localization and regulation of stargazin-like protein, γ-8 and stargazin in the plasma membrane of hippocampal and cortical neurons. Neuroscience Research. 55(1), 45–53. mla: Inamura, Mihoko, et al. “ Differential Localization and Regulation of Stargazin-like Protein, γ-8 and Stargazin in the Plasma Membrane of Hippocampal and Cortical Neurons.” Neuroscience Research, vol. 55, no. 1, Elsevier, 2006, pp. 45–53, doi:10.1016/j.neures.2006.01.004. short: M. Inamura, M. Itakura, H. Okamoto, S. Hoka, A. Mizoguchi, Y. Fukazawa, R. Shigemoto, S. Yamamori, M. Takahashi, Neuroscience Research 55 (2006) 45–53. date_created: 2018-12-11T11:58:55Z date_published: 2006-05-01T00:00:00Z date_updated: 2021-01-12T06:58:52Z day: '01' doi: 10.1016/j.neures.2006.01.004 extern: 1 intvolume: ' 55' issue: '1' month: '05' page: 45 - 53 publication: Neuroscience Research publication_status: published publisher: Elsevier publist_id: '4238' quality_controlled: 0 status: public title: ' Differential localization and regulation of stargazin-like protein, γ-8 and stargazin in the plasma membrane of hippocampal and cortical neurons' type: journal_article volume: 55 year: '2006' ... --- _id: '2657' abstract: - lang: eng text: The highest densities of the two metabotropic GABA subunits, GABA B1 and GABAB2, have been reported as occurring around the glutamatergic synapses between Purkinje cell spines and parallel fibre varicosities. In order to determine how this distribution is achieved during development, we investigated the expression pattern and the cellular and subcellular localization of the GABAB1 and GABAB2 subunits in the rat cerebellum during postnatal development. At the light microscopic level, immunoreactivity for the GABAB1 and GABAB2 subunits was very prominent in the developing molecular layer, especially in Purkinje cells. Using double immunofluorescence, we demonstrated that GABAB1 was transiently expressed in glial cells. At the electron microscopic level, immunoreactivity for GABAB receptors was always detected both pre- and postsynaptically. Presynaptically, GABAB1 and GABAB2 were localized in the extrasynaptic membrane of parallel fibres at all ages, and only rarely in GABAergic axons. Postsynaptically, GABAB receptors were localized to the extrasynaptic and perisynaptic plasma membrane of Purkinje cell dendrites and spines throughout development. Quantitative analysis and three-dimensional reconstructions further revealed a progressive developmental movement of the GABAB1 subunit on the surface of Purkinje cells from dendritic shafts to its final destination, the dendritic spines. Together, these results indicate that GABAB receptors undergo dynamic regulation during cerebellar development in association with the establishment and maturation of glutamatergic synapses to Purkinje cells. author: - first_name: Rafael full_name: Luján, Rafael last_name: Luján - first_name: Ryuichi full_name: Ryuichi Shigemoto id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 citation: ama: Luján R, Shigemoto R. Localization of metabotropic GABA receptor subunits GABAB1 and GABAB2 relative to synaptic sites in the rat developing cerebellum. European Journal of Neuroscience. 2006;23(6):1479-1490. doi:10.1111/j.1460-9568.2006.04669.x apa: Luján, R., & Shigemoto, R. (2006). Localization of metabotropic GABA receptor subunits GABAB1 and GABAB2 relative to synaptic sites in the rat developing cerebellum. European Journal of Neuroscience. Wiley-Blackwell. https://doi.org/10.1111/j.1460-9568.2006.04669.x chicago: Luján, Rafael, and Ryuichi Shigemoto. “Localization of Metabotropic GABA Receptor Subunits GABAB1 and GABAB2 Relative to Synaptic Sites in the Rat Developing Cerebellum.” European Journal of Neuroscience. Wiley-Blackwell, 2006. https://doi.org/10.1111/j.1460-9568.2006.04669.x. ieee: R. Luján and R. Shigemoto, “Localization of metabotropic GABA receptor subunits GABAB1 and GABAB2 relative to synaptic sites in the rat developing cerebellum,” European Journal of Neuroscience, vol. 23, no. 6. Wiley-Blackwell, pp. 1479–1490, 2006. ista: Luján R, Shigemoto R. 2006. Localization of metabotropic GABA receptor subunits GABAB1 and GABAB2 relative to synaptic sites in the rat developing cerebellum. European Journal of Neuroscience. 23(6), 1479–1490. mla: Luján, Rafael, and Ryuichi Shigemoto. “Localization of Metabotropic GABA Receptor Subunits GABAB1 and GABAB2 Relative to Synaptic Sites in the Rat Developing Cerebellum.” European Journal of Neuroscience, vol. 23, no. 6, Wiley-Blackwell, 2006, pp. 1479–90, doi:10.1111/j.1460-9568.2006.04669.x. short: R. Luján, R. Shigemoto, European Journal of Neuroscience 23 (2006) 1479–1490. date_created: 2018-12-11T11:58:54Z date_published: 2006-03-01T00:00:00Z date_updated: 2021-01-12T06:58:52Z day: '01' doi: 10.1111/j.1460-9568.2006.04669.x extern: 1 intvolume: ' 23' issue: '6' month: '03' page: 1479 - 1490 publication: European Journal of Neuroscience publication_status: published publisher: Wiley-Blackwell publist_id: '4239' quality_controlled: 0 status: public title: Localization of metabotropic GABA receptor subunits GABAB1 and GABAB2 relative to synaptic sites in the rat developing cerebellum type: journal_article volume: 23 year: '2006' ... --- _id: '2663' abstract: - lang: eng text: The rocker mice are hereditary ataxic mutants that carry a point mutation in the gene encoding the CaV2.1 (P/Q-type) Ca2+ channel α1 subunit, and show the mildest symptoms among the reported CaV2.1 mutant mice. We studied the basic characteristics of the rocker mutant Ca2+ channel and their impacts on excitatory synaptic transmission in cerebellar Purkinje cells (PCs). In acutely dissociated PC somas, the rocker mutant channel showed a moderate reduction in Ca2+ channel current density, whereas its kinetics and voltage dependency of gating remained nearly normal. Despite the small changes in channel function, synaptic transmission in the parallel fiber (PF)-PC synapses was severely impaired. The climbing fiber inputs onto PCs showed a moderate impairment but could elicit normal complex spikes. Presynaptic function of the PF-PC synapses, however, was unexpectedly almost normal in terms of paired-pulse facilitation, sensitivity to extracellular Ca2+ concentration and glutamate concentration in synaptic clefts. Electron microscopic analyses including freeze-fracture replica labeling revealed that both the number and density of postsynaptic α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors substantially decreased without gross structural changes of the PF-PC synapses. We also observed an abnormal arborization of PC dendrites in young adult rocker mice (∼ 1 month old). These lines of evidence suggest that even a moderate dysfunction of CaV2.1 Ca2+ channel can cause substantial changes in postsynaptic molecular composition of the PF-PC synapses and dendritic structure of PCs. author: - first_name: Takashi full_name: Kodama, Takashi last_name: Kodama - first_name: Yuko full_name: Itsukaichi-Nishida, Yuko last_name: Itsukaichi Nishida - first_name: Yugo full_name: Fukazawa, Yugo last_name: Fukazawa - first_name: Minoru full_name: Wakamori, Minoru last_name: Wakamori - first_name: Mariko full_name: Miyata, Mariko last_name: Miyata - first_name: Elek full_name: Molnár, Elek last_name: Molnár - first_name: Yasuo full_name: Mori, Yasuo last_name: Mori - first_name: Ryuichi full_name: Ryuichi Shigemoto id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 - first_name: Keiji full_name: Imoto, Keiji last_name: Imoto citation: ama: Kodama T, Itsukaichi Nishida Y, Fukazawa Y, et al. A CaV2.1 calcium channel mutation rocker reduces the number of postsynaptic AMPA receptors in parallel fiber-Purkinje cell synapses. European Journal of Neuroscience. 2006;24(11):2993-3007. doi:10.1111/j.1460-9568.2006.05191.x apa: Kodama, T., Itsukaichi Nishida, Y., Fukazawa, Y., Wakamori, M., Miyata, M., Molnár, E., … Imoto, K. (2006). A CaV2.1 calcium channel mutation rocker reduces the number of postsynaptic AMPA receptors in parallel fiber-Purkinje cell synapses. European Journal of Neuroscience. Wiley-Blackwell. https://doi.org/10.1111/j.1460-9568.2006.05191.x chicago: Kodama, Takashi, Yuko Itsukaichi Nishida, Yugo Fukazawa, Minoru Wakamori, Mariko Miyata, Elek Molnár, Yasuo Mori, Ryuichi Shigemoto, and Keiji Imoto. “A CaV2.1 Calcium Channel Mutation Rocker Reduces the Number of Postsynaptic AMPA Receptors in Parallel Fiber-Purkinje Cell Synapses.” European Journal of Neuroscience. Wiley-Blackwell, 2006. https://doi.org/10.1111/j.1460-9568.2006.05191.x. ieee: T. Kodama et al., “A CaV2.1 calcium channel mutation rocker reduces the number of postsynaptic AMPA receptors in parallel fiber-Purkinje cell synapses,” European Journal of Neuroscience, vol. 24, no. 11. Wiley-Blackwell, pp. 2993–3007, 2006. ista: Kodama T, Itsukaichi Nishida Y, Fukazawa Y, Wakamori M, Miyata M, Molnár E, Mori Y, Shigemoto R, Imoto K. 2006. A CaV2.1 calcium channel mutation rocker reduces the number of postsynaptic AMPA receptors in parallel fiber-Purkinje cell synapses. European Journal of Neuroscience. 24(11), 2993–3007. mla: Kodama, Takashi, et al. “A CaV2.1 Calcium Channel Mutation Rocker Reduces the Number of Postsynaptic AMPA Receptors in Parallel Fiber-Purkinje Cell Synapses.” European Journal of Neuroscience, vol. 24, no. 11, Wiley-Blackwell, 2006, pp. 2993–3007, doi:10.1111/j.1460-9568.2006.05191.x. short: T. Kodama, Y. Itsukaichi Nishida, Y. Fukazawa, M. Wakamori, M. Miyata, E. Molnár, Y. Mori, R. Shigemoto, K. Imoto, European Journal of Neuroscience 24 (2006) 2993–3007. date_created: 2018-12-11T11:58:56Z date_published: 2006-12-01T00:00:00Z date_updated: 2021-01-12T06:58:54Z day: '01' doi: 10.1111/j.1460-9568.2006.05191.x extern: 1 intvolume: ' 24' issue: '11' month: '12' page: 2993 - 3007 publication: European Journal of Neuroscience publication_status: published publisher: Wiley-Blackwell publist_id: '4233' quality_controlled: 0 status: public title: A CaV2.1 calcium channel mutation rocker reduces the number of postsynaptic AMPA receptors in parallel fiber-Purkinje cell synapses type: journal_article volume: 24 year: '2006' ... --- _id: '2661' abstract: - lang: eng text: GABAB receptors are the G protein-coupled receptors for the main inhibitory neurotransmitter in the brain, γ-aminobutyric acid (GABA). Molecular diversity in the GABAB system arises from the GABAB1a and GABAB1b subunit isoforms that solely differ in their ectodomains by a pair of sushi repeats that is unique to GABAB1a. Using a combined genetic, physiological, and morphological approach, we now demonstrate that GABAB1 isoforms localize to distinct synaptic sites and convey separate functions in vivo. At hippocampal CA3-to-CA1 synapses, GABAB1a assembles heteroreceptors inhibiting glutamate release, while predominantly GABAB1b mediates postsynaptic inhibition. Electron microscopy reveals a synaptic distribution of GABAB1 isoforms that agrees with the observed functional differences. Transfected CA3 neurons selectively express GABAB1a in distal axons, suggesting that the sushi repeats, a conserved protein interaction motif, specify heteroreceptor localization. The constitutive absence of GABAB1a but not GABAB1b results in impaired synaptic plasticity and hippocampus-dependent memory, emphasizing molecular differences in synaptic GABAB functions. author: - first_name: Réjan full_name: Vigot, Réjan last_name: Vigot - first_name: Samuel full_name: Barbieri, Samuel last_name: Barbieri - first_name: Hans full_name: Bräuner-Osborne, Hans last_name: Bräuner Osborne - first_name: Rostislav full_name: Tureček, Rostislav last_name: Tureček - first_name: Ryuichi full_name: Ryuichi Shigemoto id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 - first_name: Yan full_name: Zhang, Yan Ping last_name: Zhang - first_name: Rafael full_name: Luján, Rafael last_name: Luján - first_name: Laura full_name: Jacobson, Laura H last_name: Jacobson - first_name: Barbara full_name: Biermann, Barbara last_name: Biermann - first_name: Jean full_name: Fritschy, Jean-Marc last_name: Fritschy - first_name: Claire full_name: Vacher, Claire-Marie last_name: Vacher - first_name: Matthias full_name: Müller, Matthias P last_name: Müller - first_name: Gilles full_name: Sansig, Gilles last_name: Sansig - first_name: Nicole full_name: Guetg, Nicole last_name: Guetg - first_name: John full_name: Cryan, John F last_name: Cryan - first_name: Klemens full_name: Kaupmann, Klemens last_name: Kaupmann - first_name: Martin full_name: Gassmann, Martin last_name: Gassmann - first_name: Thomas full_name: Oertner, Thomas G last_name: Oertner - first_name: Bernhard full_name: Bettler, Bernhard last_name: Bettler citation: ama: Vigot R, Barbieri S, Bräuner Osborne H, et al. Differential Compartmentalization and Distinct Functions of GABAB Receptor Variants. Neuron. 2006;50(4):589-601. doi:10.1016/j.neuron.2006.04.014 apa: Vigot, R., Barbieri, S., Bräuner Osborne, H., Tureček, R., Shigemoto, R., Zhang, Y., … Bettler, B. (2006). Differential Compartmentalization and Distinct Functions of GABAB Receptor Variants. Neuron. Elsevier. https://doi.org/10.1016/j.neuron.2006.04.014 chicago: Vigot, Réjan, Samuel Barbieri, Hans Bräuner Osborne, Rostislav Tureček, Ryuichi Shigemoto, Yan Zhang, Rafael Luján, et al. “Differential Compartmentalization and Distinct Functions of GABAB Receptor Variants.” Neuron. Elsevier, 2006. https://doi.org/10.1016/j.neuron.2006.04.014. ieee: R. Vigot et al., “Differential Compartmentalization and Distinct Functions of GABAB Receptor Variants,” Neuron, vol. 50, no. 4. Elsevier, pp. 589–601, 2006. ista: Vigot R, Barbieri S, Bräuner Osborne H, Tureček R, Shigemoto R, Zhang Y, Luján R, Jacobson L, Biermann B, Fritschy J, Vacher C, Müller M, Sansig G, Guetg N, Cryan J, Kaupmann K, Gassmann M, Oertner T, Bettler B. 2006. Differential Compartmentalization and Distinct Functions of GABAB Receptor Variants. Neuron. 50(4), 589–601. mla: Vigot, Réjan, et al. “Differential Compartmentalization and Distinct Functions of GABAB Receptor Variants.” Neuron, vol. 50, no. 4, Elsevier, 2006, pp. 589–601, doi:10.1016/j.neuron.2006.04.014. short: R. Vigot, S. Barbieri, H. Bräuner Osborne, R. Tureček, R. Shigemoto, Y. Zhang, R. Luján, L. Jacobson, B. Biermann, J. Fritschy, C. Vacher, M. Müller, G. Sansig, N. Guetg, J. Cryan, K. Kaupmann, M. Gassmann, T. Oertner, B. Bettler, Neuron 50 (2006) 589–601. date_created: 2018-12-11T11:58:56Z date_published: 2006-05-18T00:00:00Z date_updated: 2021-01-12T06:58:54Z day: '18' doi: 10.1016/j.neuron.2006.04.014 extern: 1 intvolume: ' 50' issue: '4' month: '05' page: 589 - 601 publication: Neuron publication_status: published publisher: Elsevier publist_id: '4237' quality_controlled: 0 status: public title: Differential Compartmentalization and Distinct Functions of GABAB Receptor Variants type: journal_article volume: 50 year: '2006' ... --- _id: '2662' abstract: - lang: eng text: G-protein-coupled inwardly rectifying K+ channels (Kir3 channels) coupled to metabotropic GABAB receptors are essential for the control of neuronal excitation. To determine the distribution of Kir3 channels and their spatial relationship to GABAB receptors on hippocampal pyramidal cells, we used a high-resolution immunocytochemical approach. Immunoreactivity for the Kir3.2 subunit was most abundant postsynaptically and localized to the extrasynaptic plasma membrane of dendritic shafts and spines of principal cells. Quantitative analysis of immunogold particles for Kir3.2 revealed an enrichment of the protein around putative glutamatergic synapses on dendritic spines, similar to that of GABA B1. Consistent with this observation, a high degree of coclustering of Kir3.2 and GABAB1 was revealed around excitatory synapses by the highly sensitive SDS-digested freeze-fracture replica immunolabeling. In contrast, in dendritic shafts receptors and channels were found to be mainly segregated. These results suggest that Kir3.2-containing K+ channels on dendritic spines preferentially mediate the effect of GABA, whereas channels on dendritic shafts are likely to be activated by other neurotransmitters as well. Thus, Kir3 channels, localized to different subcellular compartments of hippocampal principal cells, appear to be differentially involved in synaptic integration in pyramidal cell dendrites. author: - first_name: Ákos full_name: Kulik, Ákos last_name: Kulik - first_name: Imre full_name: Vida, Imre last_name: Vida - first_name: Yugo full_name: Fukazawa, Yugo last_name: Fukazawa - first_name: Nicole full_name: Guetg, Nicole last_name: Guetg - first_name: Yu full_name: Kasugai, Yu last_name: Kasugai - first_name: Cheryl full_name: Marker, Cheryl L last_name: Marker - first_name: Franck full_name: Rigato, Franck last_name: Rigato - first_name: Bernhard full_name: Bettler, Bernhard last_name: Bettler - first_name: Kevin full_name: Wickman, Kevin D last_name: Wickman - first_name: Michael full_name: Frotscher, Michael last_name: Frotscher - first_name: Ryuichi full_name: Ryuichi Shigemoto id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 citation: ama: Kulik Á, Vida I, Fukazawa Y, et al. Compartment-dependent colocalization of Kir3.2-containing K+ channels and GABAB receptors in hippocampal pyramidal cells. Journal of Neuroscience. 2006;26(16):4289-4297. doi:10.1523/JNEUROSCI.4178-05.2006 apa: Kulik, Á., Vida, I., Fukazawa, Y., Guetg, N., Kasugai, Y., Marker, C., … Shigemoto, R. (2006). Compartment-dependent colocalization of Kir3.2-containing K+ channels and GABAB receptors in hippocampal pyramidal cells. Journal of Neuroscience. Society for Neuroscience. https://doi.org/10.1523/JNEUROSCI.4178-05.2006 chicago: Kulik, Ákos, Imre Vida, Yugo Fukazawa, Nicole Guetg, Yu Kasugai, Cheryl Marker, Franck Rigato, et al. “Compartment-Dependent Colocalization of Kir3.2-Containing K+ Channels and GABAB Receptors in Hippocampal Pyramidal Cells.” Journal of Neuroscience. Society for Neuroscience, 2006. https://doi.org/10.1523/JNEUROSCI.4178-05.2006. ieee: Á. Kulik et al., “Compartment-dependent colocalization of Kir3.2-containing K+ channels and GABAB receptors in hippocampal pyramidal cells,” Journal of Neuroscience, vol. 26, no. 16. Society for Neuroscience, pp. 4289–4297, 2006. ista: Kulik Á, Vida I, Fukazawa Y, Guetg N, Kasugai Y, Marker C, Rigato F, Bettler B, Wickman K, Frotscher M, Shigemoto R. 2006. Compartment-dependent colocalization of Kir3.2-containing K+ channels and GABAB receptors in hippocampal pyramidal cells. Journal of Neuroscience. 26(16), 4289–4297. mla: Kulik, Ákos, et al. “Compartment-Dependent Colocalization of Kir3.2-Containing K+ Channels and GABAB Receptors in Hippocampal Pyramidal Cells.” Journal of Neuroscience, vol. 26, no. 16, Society for Neuroscience, 2006, pp. 4289–97, doi:10.1523/JNEUROSCI.4178-05.2006. short: Á. Kulik, I. Vida, Y. Fukazawa, N. Guetg, Y. Kasugai, C. Marker, F. Rigato, B. Bettler, K. Wickman, M. Frotscher, R. Shigemoto, Journal of Neuroscience 26 (2006) 4289–4297. date_created: 2018-12-11T11:58:56Z date_published: 2006-04-19T00:00:00Z date_updated: 2021-01-12T06:58:54Z day: '19' doi: 10.1523/JNEUROSCI.4178-05.2006 extern: 1 intvolume: ' 26' issue: '16' month: '04' page: 4289 - 4297 publication: Journal of Neuroscience publication_status: published publisher: Society for Neuroscience publist_id: '4235' quality_controlled: 0 status: public title: Compartment-dependent colocalization of Kir3.2-containing K+ channels and GABAB receptors in hippocampal pyramidal cells type: journal_article volume: 26 year: '2006' ... --- _id: '2660' abstract: - lang: eng text: Pavlovian fear conditioning, a simple form of associative learning, is thought to involve the induction of associative, NMDA receptor-dependent long-term potentiation (LTP) in the lateral amygdala. Using a combined genetic and electrophysiological approach, we show here that lack of a specific GABAB receptor subtype, GABAB(1a,2), unmasks a nonassociative, NMDA receptor-independent form of presynaptic LTP at cortico-amygdala afferents. Moreover, the level of presynaptic GABA B(1a,2) receptor activation, and hence the balance between associative and nonassociative forms of LTP, can be dynamically modulated by local inhibitory activity. At the behavioral level, genetic loss of GABA B(1a) results in a generalization of conditioned fear to nonconditioned stimuli. Our findings indicate that presynaptic inhibition through GABAB(1a,2) receptors serves as an activity-dependent constraint on the induction of homosynaptic plasticity, which may be important to prevent the generalization of conditioned fear. author: - first_name: Hamdy full_name: Shaban, Hamdy last_name: Shaban - first_name: Yann full_name: Humeau, Yann last_name: Humeau - first_name: Cyril full_name: Herry, Cyril last_name: Herry - first_name: Guillaume full_name: Cassasus, Guillaume last_name: Cassasus - first_name: Ryuichi full_name: Ryuichi Shigemoto id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 - first_name: Stéphane full_name: Ciocchi, Stéphane last_name: Ciocchi - first_name: Samuel full_name: Barbieri, Samuel last_name: Barbieri - first_name: Herman full_name: Van Der Putten, Herman V last_name: Van Der Putten - first_name: Klemens full_name: Kaupmann, Klemens last_name: Kaupmann - first_name: Bernhard full_name: Bettler, Bernhard last_name: Bettler - first_name: Andreas full_name: Lüthi, Andreas last_name: Lüthi citation: ama: Shaban H, Humeau Y, Herry C, et al. Generalization of amygdala LTP and conditioned fear in the absence of presynaptic inhibition. Nature Neuroscience. 2006;9(8):1028-1035. doi:10.1038/nn1732 apa: Shaban, H., Humeau, Y., Herry, C., Cassasus, G., Shigemoto, R., Ciocchi, S., … Lüthi, A. (2006). Generalization of amygdala LTP and conditioned fear in the absence of presynaptic inhibition. Nature Neuroscience. Nature Publishing Group. https://doi.org/10.1038/nn1732 chicago: Shaban, Hamdy, Yann Humeau, Cyril Herry, Guillaume Cassasus, Ryuichi Shigemoto, Stéphane Ciocchi, Samuel Barbieri, et al. “Generalization of Amygdala LTP and Conditioned Fear in the Absence of Presynaptic Inhibition.” Nature Neuroscience. Nature Publishing Group, 2006. https://doi.org/10.1038/nn1732. ieee: H. Shaban et al., “Generalization of amygdala LTP and conditioned fear in the absence of presynaptic inhibition,” Nature Neuroscience, vol. 9, no. 8. Nature Publishing Group, pp. 1028–1035, 2006. ista: Shaban H, Humeau Y, Herry C, Cassasus G, Shigemoto R, Ciocchi S, Barbieri S, Van Der Putten H, Kaupmann K, Bettler B, Lüthi A. 2006. Generalization of amygdala LTP and conditioned fear in the absence of presynaptic inhibition. Nature Neuroscience. 9(8), 1028–1035. mla: Shaban, Hamdy, et al. “Generalization of Amygdala LTP and Conditioned Fear in the Absence of Presynaptic Inhibition.” Nature Neuroscience, vol. 9, no. 8, Nature Publishing Group, 2006, pp. 1028–35, doi:10.1038/nn1732. short: H. Shaban, Y. Humeau, C. Herry, G. Cassasus, R. Shigemoto, S. Ciocchi, S. Barbieri, H. Van Der Putten, K. Kaupmann, B. Bettler, A. Lüthi, Nature Neuroscience 9 (2006) 1028–1035. date_created: 2018-12-11T11:58:55Z date_published: 2006-08-01T00:00:00Z date_updated: 2021-01-12T06:58:53Z day: '01' doi: 10.1038/nn1732 extern: 1 intvolume: ' 9' issue: '8' month: '08' page: 1028 - 1035 publication: Nature Neuroscience publication_status: published publisher: Nature Publishing Group publist_id: '4236' quality_controlled: 0 status: public title: Generalization of amygdala LTP and conditioned fear in the absence of presynaptic inhibition type: journal_article volume: 9 year: '2006' ... --- _id: '2664' abstract: - lang: eng text: Metabotropic glutamate receptors (mGlus) are a family of G-protein-coupled receptors activated by the neurotransmitter glutamate. Molecular cloning has revealed eight different subtypes (mGlu1-8) with distinct molecular and pharmacological properties. Multiplicity in this receptor family is further generated through alternative splicing. mGlus activate a multitude of signalling pathways important for modulating neuronal excitability, synaptic plasticity and feedback regulation of neurotransmitter release. In this review, we summarize anatomical findings (from our work and that of other laboratories) describing their distribution in the central nervous system. Recent evidence regarding the localization of these receptors in peripheral tissues will also be examined. The distinct regional, cellular and subcellular distribution of mGlus in the brain will be discussed in view of their relationship to neurotransmitter release sites and of possible functional implications. author: - first_name: Francesco full_name: Ferraguti, Francesco last_name: Ferraguti - first_name: Ryuichi full_name: Ryuichi Shigemoto id: 499F3ABC-F248-11E8-B48F-1D18A9856A87 last_name: Shigemoto orcid: 0000-0001-8761-9444 citation: ama: Ferraguti F, Shigemoto R. Metabotropic glutamate receptors. Cell and Tissue Research. 2006;326(2):483-504. doi:10.1007/s00441-006-0266-5 apa: Ferraguti, F., & Shigemoto, R. (2006). Metabotropic glutamate receptors. Cell and Tissue Research. Springer. https://doi.org/10.1007/s00441-006-0266-5 chicago: Ferraguti, Francesco, and Ryuichi Shigemoto. “Metabotropic Glutamate Receptors.” Cell and Tissue Research. Springer, 2006. https://doi.org/10.1007/s00441-006-0266-5. ieee: F. Ferraguti and R. Shigemoto, “Metabotropic glutamate receptors,” Cell and Tissue Research, vol. 326, no. 2. Springer, pp. 483–504, 2006. ista: Ferraguti F, Shigemoto R. 2006. Metabotropic glutamate receptors. Cell and Tissue Research. 326(2), 483–504. mla: Ferraguti, Francesco, and Ryuichi Shigemoto. “Metabotropic Glutamate Receptors.” Cell and Tissue Research, vol. 326, no. 2, Springer, 2006, pp. 483–504, doi:10.1007/s00441-006-0266-5. short: F. Ferraguti, R. Shigemoto, Cell and Tissue Research 326 (2006) 483–504. date_created: 2018-12-11T11:58:57Z date_published: 2006-11-01T00:00:00Z date_updated: 2020-07-14T12:45:44Z day: '01' doi: 10.1007/s00441-006-0266-5 extern: 1 intvolume: ' 326' issue: '2' month: '11' page: 483 - 504 publication: Cell and Tissue Research publication_status: published publisher: Springer publist_id: '4234' quality_controlled: 0 status: public title: Metabotropic glutamate receptors type: review volume: 326 year: '2006' ... --- _id: '2747' abstract: - lang: eng text: Consider a system of N bosons on the three-dimensional unit torus interacting via a pair potential N 2V(N(x i - x j)) where x = (x i, . . ., x N) denotes the positions of the particles. Suppose that the initial data ψ N,0 satisfies the condition 〈ψ N,0, H 2 Nψ N,0) ≤ C N 2 where H N is the Hamiltonian of the Bose system. This condition is satisfied if ψ N,0 = W Nφ N,t where W N is an approximate ground state to H N and φ N,0 is regular. Let ψ N,t denote the solution to the Schrödinger equation with Hamiltonian H N. Gross and Pitaevskii proposed to model the dynamics of such a system by a nonlinear Schrödinger equation, the Gross-Pitaevskii (GP) equation. The GP hierarchy is an infinite BBGKY hierarchy of equations so that if u t solves the GP equation, then the family of k-particle density matrices ⊗ k |u t?〉 〈 t | solves the GP hierarchy. We prove that as N → ∞ the limit points of the k-particle density matrices of ψ N,t are solutions of the GP hierarchy. Our analysis requires that the N-boson dynamics be described by a modified Hamiltonian that cuts off the pair interactions whenever at least three particles come into a region with diameter much smaller than the typical interparticle distance. Our proof can be extended to a modified Hamiltonian that only forbids at least n particles from coming close together for any fixed n. author: - first_name: László full_name: László Erdös id: 4DBD5372-F248-11E8-B48F-1D18A9856A87 last_name: Erdös orcid: 0000-0001-5366-9603 - first_name: Benjamin full_name: Schlein, Benjamin last_name: Schlein - first_name: Horng full_name: Yau, Horng-Tzer last_name: Yau citation: ama: Erdös L, Schlein B, Yau H. Derivation of the Gross-Pitaevskii hierarchy for the dynamics of Bose-Einstein condensate. Communications on Pure and Applied Mathematics. 2006;59(12):1659-1741. doi:10.1002/cpa.20123 apa: Erdös, L., Schlein, B., & Yau, H. (2006). Derivation of the Gross-Pitaevskii hierarchy for the dynamics of Bose-Einstein condensate. Communications on Pure and Applied Mathematics. Wiley-Blackwell. https://doi.org/10.1002/cpa.20123 chicago: Erdös, László, Benjamin Schlein, and Horng Yau. “Derivation of the Gross-Pitaevskii Hierarchy for the Dynamics of Bose-Einstein Condensate.” Communications on Pure and Applied Mathematics. Wiley-Blackwell, 2006. https://doi.org/10.1002/cpa.20123. ieee: L. Erdös, B. Schlein, and H. Yau, “Derivation of the Gross-Pitaevskii hierarchy for the dynamics of Bose-Einstein condensate,” Communications on Pure and Applied Mathematics, vol. 59, no. 12. Wiley-Blackwell, pp. 1659–1741, 2006. ista: Erdös L, Schlein B, Yau H. 2006. Derivation of the Gross-Pitaevskii hierarchy for the dynamics of Bose-Einstein condensate. Communications on Pure and Applied Mathematics. 59(12), 1659–1741. mla: Erdös, László, et al. “Derivation of the Gross-Pitaevskii Hierarchy for the Dynamics of Bose-Einstein Condensate.” Communications on Pure and Applied Mathematics, vol. 59, no. 12, Wiley-Blackwell, 2006, pp. 1659–741, doi:10.1002/cpa.20123. short: L. Erdös, B. Schlein, H. Yau, Communications on Pure and Applied Mathematics 59 (2006) 1659–1741. date_created: 2018-12-11T11:59:23Z date_published: 2006-12-01T00:00:00Z date_updated: 2021-01-12T06:59:26Z day: '01' doi: 10.1002/cpa.20123 extern: 1 intvolume: ' 59' issue: '12' month: '12' page: 1659 - 1741 publication: Communications on Pure and Applied Mathematics publication_status: published publisher: Wiley-Blackwell publist_id: '4145' quality_controlled: 0 status: public title: Derivation of the Gross-Pitaevskii hierarchy for the dynamics of Bose-Einstein condensate type: journal_article volume: 59 year: '2006' ... --- _id: '2745' abstract: - lang: eng text: 'We consider the dynamics of N boson systems interacting through a pair potential N -1 V a (x i -x j ) where V a (x)=a -3 V(x/a). We denote the solution to the N-particle Schrödinger equation by Ψ N, t . Recall that the Gross-Pitaevskii (GP) equation is a nonlinear Schrödinger equation and the GP hierarchy is an infinite BBGKY hierarchy of equations so that if u t solves the GP equation, then the family of k-particle density matrices [InlineMediaObject not available: see fulltext.] solves the GP hierarchy. Under the assumption that a = Nε for 0 < ε < 3/5, we prove that as N→∞ the limit points of the k-particle density matrices of Ψ N, t are solutions of the GP hierarchy with the coupling constant in the nonlinear term of the GP equation given by ∫ V (x)dx. The uniqueness of the solutions of this hierarchy remains an open question.' author: - first_name: Alexander full_name: Elgart, Alexander last_name: Elgart - first_name: László full_name: László Erdös id: 4DBD5372-F248-11E8-B48F-1D18A9856A87 last_name: Erdös orcid: 0000-0001-5366-9603 - first_name: Benjamin full_name: Schlein, Benjamin last_name: Schlein - first_name: Horng full_name: Yau, Horng-Tzer last_name: Yau citation: ama: Elgart A, Erdös L, Schlein B, Yau H. Gross-Pitaevskii equation as the mean field limit of weakly coupled bosons. Archive for Rational Mechanics and Analysis. 2006;179(2):265-283. doi:10.1007/s00205-005-0388-z apa: Elgart, A., Erdös, L., Schlein, B., & Yau, H. (2006). Gross-Pitaevskii equation as the mean field limit of weakly coupled bosons. Archive for Rational Mechanics and Analysis. Springer. https://doi.org/10.1007/s00205-005-0388-z chicago: Elgart, Alexander, László Erdös, Benjamin Schlein, and Horng Yau. “Gross-Pitaevskii Equation as the Mean Field Limit of Weakly Coupled Bosons.” Archive for Rational Mechanics and Analysis. Springer, 2006. https://doi.org/10.1007/s00205-005-0388-z. ieee: A. Elgart, L. Erdös, B. Schlein, and H. Yau, “Gross-Pitaevskii equation as the mean field limit of weakly coupled bosons,” Archive for Rational Mechanics and Analysis, vol. 179, no. 2. Springer, pp. 265–283, 2006. ista: Elgart A, Erdös L, Schlein B, Yau H. 2006. Gross-Pitaevskii equation as the mean field limit of weakly coupled bosons. Archive for Rational Mechanics and Analysis. 179(2), 265–283. mla: Elgart, Alexander, et al. “Gross-Pitaevskii Equation as the Mean Field Limit of Weakly Coupled Bosons.” Archive for Rational Mechanics and Analysis, vol. 179, no. 2, Springer, 2006, pp. 265–83, doi:10.1007/s00205-005-0388-z. short: A. Elgart, L. Erdös, B. Schlein, H. Yau, Archive for Rational Mechanics and Analysis 179 (2006) 265–283. date_created: 2018-12-11T11:59:22Z date_published: 2006-02-01T00:00:00Z date_updated: 2021-01-12T06:59:25Z day: '01' doi: 10.1007/s00205-005-0388-z extern: 1 intvolume: ' 179' issue: '2' month: '02' page: 265 - 283 publication: Archive for Rational Mechanics and Analysis publication_status: published publisher: Springer publist_id: '4147' quality_controlled: 0 status: public title: Gross-Pitaevskii equation as the mean field limit of weakly coupled bosons type: journal_article volume: 179 year: '2006' ... --- _id: '2746' abstract: - lang: eng text: We consider random Schrödinger equations on Rd or Zd for d ≥ 3 with uncorrelated, identically distributed random potential. Denote by λ the coupling constant and ψt the solution with initial data ψ0. alternative_title: - LNP author: - first_name: László full_name: László Erdös id: 4DBD5372-F248-11E8-B48F-1D18A9856A87 last_name: Erdös orcid: 0000-0001-5366-9603 - first_name: Manfred full_name: Salmhofer, Manfred last_name: Salmhofer - first_name: Horng full_name: Yau, Horng-Tzer last_name: Yau citation: ama: 'Erdös L, Salmhofer M, Yau H. Towards the quantum Brownian motion. In: Vol 690. World Scientific Publishing; 2006:233-257. doi:10.1007/3-540-34273-7_18' apa: 'Erdös, L., Salmhofer, M., & Yau, H. (2006). Towards the quantum Brownian motion (Vol. 690, pp. 233–257). Presented at the QMath: Mathematical Results in Quantum Physics, World Scientific Publishing. https://doi.org/10.1007/3-540-34273-7_18' chicago: Erdös, László, Manfred Salmhofer, and Horng Yau. “Towards the Quantum Brownian Motion,” 690:233–57. World Scientific Publishing, 2006. https://doi.org/10.1007/3-540-34273-7_18. ieee: 'L. Erdös, M. Salmhofer, and H. Yau, “Towards the quantum Brownian motion,” presented at the QMath: Mathematical Results in Quantum Physics, 2006, vol. 690, pp. 233–257.' ista: 'Erdös L, Salmhofer M, Yau H. 2006. Towards the quantum Brownian motion. QMath: Mathematical Results in Quantum Physics, LNP, vol. 690, 233–257.' mla: Erdös, László, et al. Towards the Quantum Brownian Motion. Vol. 690, World Scientific Publishing, 2006, pp. 233–57, doi:10.1007/3-540-34273-7_18. short: L. Erdös, M. Salmhofer, H. Yau, in:, World Scientific Publishing, 2006, pp. 233–257. conference: name: 'QMath: Mathematical Results in Quantum Physics' date_created: 2018-12-11T11:59:23Z date_published: 2006-01-01T00:00:00Z date_updated: 2021-01-12T06:59:25Z day: '01' doi: 10.1007/3-540-34273-7_18 extern: 1 intvolume: ' 690' month: '01' page: 233 - 257 publication_status: published publisher: World Scientific Publishing publist_id: '4146' quality_controlled: 0 status: public title: Towards the quantum Brownian motion type: conference volume: 690 year: '2006' ... --- _id: '2791' abstract: - lang: eng text: Generally, the motion of fluids is smooth and laminar at low speeds but becomes highly disordered and turbulent as the velocity increases. The transition from laminar to turbulent flow can involve a sequence of instabilities in which the system realizes progressively more complicated states, or it can occur suddenly. Once the transition has taken place, it is generally assumed that, under steady conditions, the turbulent state will persist indefinitely. The flow of a fluid down a straight pipe provides a ubiquitous example of a shear flow undergoing a sudden transition from laminar to turbulent motion. Extensive calculations and experimental studies have shown that, at relatively low flow rates, turbulence in pipes is transient, and is characterized by an exponential distribution of lifetimes. They also suggest that for Reynolds numbers exceeding a critical value the lifetime diverges (that is, becomes infinitely large), marking a change from transient to persistent turbulence. Here we present experimental data and numerical calculations covering more than two decades of lifetimes, showing that the lifetime does not in fact diverge but rather increases exponentially with the Reynolds number. This implies that turbulence in pipes is only a transient event (contrary to the commonly accepted view), and that the turbulent and laminar states remain dynamically connected, suggesting avenues for turbulence control. author: - first_name: Björn full_name: Björn Hof id: 3A374330-F248-11E8-B48F-1D18A9856A87 last_name: Hof orcid: 0000-0003-2057-2754 - first_name: Jerry full_name: Westerweel, Jerry last_name: Westerweel - first_name: Tobias full_name: Schneider, Tobias M last_name: Schneider - first_name: Bruno full_name: Eckhardt, Bruno last_name: Eckhardt citation: ama: Hof B, Westerweel J, Schneider T, Eckhardt B. Finite lifetime of turbulence in shear flows. Nature. 2006;443(7107):59-62. doi:10.1038/nature05089 apa: Hof, B., Westerweel, J., Schneider, T., & Eckhardt, B. (2006). Finite lifetime of turbulence in shear flows. Nature. Nature Publishing Group. https://doi.org/10.1038/nature05089 chicago: Hof, Björn, Jerry Westerweel, Tobias Schneider, and Bruno Eckhardt. “Finite Lifetime of Turbulence in Shear Flows.” Nature. Nature Publishing Group, 2006. https://doi.org/10.1038/nature05089. ieee: B. Hof, J. Westerweel, T. Schneider, and B. Eckhardt, “Finite lifetime of turbulence in shear flows,” Nature, vol. 443, no. 7107. Nature Publishing Group, pp. 59–62, 2006. ista: Hof B, Westerweel J, Schneider T, Eckhardt B. 2006. Finite lifetime of turbulence in shear flows. Nature. 443(7107), 59–62. mla: Hof, Björn, et al. “Finite Lifetime of Turbulence in Shear Flows.” Nature, vol. 443, no. 7107, Nature Publishing Group, 2006, pp. 59–62, doi:10.1038/nature05089. short: B. Hof, J. Westerweel, T. Schneider, B. Eckhardt, Nature 443 (2006) 59–62. date_created: 2018-12-11T11:59:37Z date_published: 2006-09-07T00:00:00Z date_updated: 2021-01-12T06:59:44Z day: '07' doi: 10.1038/nature05089 extern: 1 intvolume: ' 443' issue: '7107' month: '09' page: 59 - 62 publication: Nature publication_status: published publisher: Nature Publishing Group publist_id: '4098' quality_controlled: 0 status: public title: Finite lifetime of turbulence in shear flows type: journal_article volume: 443 year: '2006' ... --- _id: '2792' abstract: - lang: eng text: Transition to turbulence in pipe flow has posed a riddle in fluid dynamics since the pioneering experiments of Reynolds[1]. Although the laminar flow is linearly stable for all flow rates, practical pipe flows become turbulent at large enough flow speeds. Turbulence arises suddenly and fully without distinct steps and without a clear critical point. The complexity of this problem has puzzled mathematicians, physicists and engineers for more than a century and no satisfactory explanation of this problem has been given. In a very recent theoretical approach it has been suggested that unstable solutions of the Navier Stokes equations may hold the key to understanding this problem. In numerical studies such unstable states have been identified as exact solutions for the idealized case of a pipe with periodic boundary conditions[2, 3]. These solutions have the form of waves extending through the entire pipe and travelling in the streamwise direction at a phase speed close to the bulk velocity of the fluid. With the aid of a recently developed high-speed stereoscopic Particle Image Velocimetry (PIV) system, we were able to observe transients of such unstable solutions in turbulent pipe flow[4]. author: - first_name: Björn full_name: Björn Hof id: 3A374330-F248-11E8-B48F-1D18A9856A87 last_name: Hof orcid: 0000-0003-2057-2754 - first_name: Casimir full_name: van Doorne, Casimir W last_name: Van Doorne - first_name: Jerry full_name: Westerweel, Jerry last_name: Westerweel - first_name: Frans full_name: Nieuwstadt, Frans T last_name: Nieuwstadt citation: ama: Hof B, Van Doorne C, Westerweel J, Nieuwstadt F. Observation of nonlinear travelling waves in turbulent pipe flow. Fluid Mechanics and its Applications. 2006;78:109-114. doi:10.1007/1-4020-4159-4_11 apa: Hof, B., Van Doorne, C., Westerweel, J., & Nieuwstadt, F. (2006). Observation of nonlinear travelling waves in turbulent pipe flow. Fluid Mechanics and Its Applications. Springer. https://doi.org/10.1007/1-4020-4159-4_11 chicago: Hof, Björn, Casimir Van Doorne, Jerry Westerweel, and Frans Nieuwstadt. “Observation of Nonlinear Travelling Waves in Turbulent Pipe Flow.” Fluid Mechanics and Its Applications. Springer, 2006. https://doi.org/10.1007/1-4020-4159-4_11. ieee: B. Hof, C. Van Doorne, J. Westerweel, and F. Nieuwstadt, “Observation of nonlinear travelling waves in turbulent pipe flow,” Fluid Mechanics and its Applications, vol. 78. Springer, pp. 109–114, 2006. ista: Hof B, Van Doorne C, Westerweel J, Nieuwstadt F. 2006. Observation of nonlinear travelling waves in turbulent pipe flow. Fluid Mechanics and its Applications. 78, 109–114. mla: Hof, Björn, et al. “Observation of Nonlinear Travelling Waves in Turbulent Pipe Flow.” Fluid Mechanics and Its Applications, vol. 78, Springer, 2006, pp. 109–14, doi:10.1007/1-4020-4159-4_11. short: B. Hof, C. Van Doorne, J. Westerweel, F. Nieuwstadt, Fluid Mechanics and Its Applications 78 (2006) 109–114. date_created: 2018-12-11T11:59:37Z date_published: 2006-01-18T00:00:00Z date_updated: 2021-01-12T06:59:45Z day: '18' doi: 10.1007/1-4020-4159-4_11 extern: 1 intvolume: ' 78' month: '01' page: 109 - 114 publication: Fluid Mechanics and its Applications publication_status: published publisher: Springer publist_id: '4097' quality_controlled: 0 status: public title: Observation of nonlinear travelling waves in turbulent pipe flow type: journal_article volume: 78 year: '2006' ... --- _id: '2894' abstract: - lang: eng text: IL-10 is a potent anti-inflammatory and immunomodulatory cytokine, exerting major effects in the degree and quality of the immune response. Using a newly generated IL-10 reporter mouse model, which easily allows the study of IL-10 expression from each allele in a single cell, we report here for the first time that IL-10 is predominantly monoallelic expressed in CD4+ T cells. Furthermore, we have compelling evidence that this expression pattern is not due to parental imprinting, allelic exclusion, or strong allelic bias. Instead, our results support a stochastic regulation mechanism, in which the probability to initiate allelic transcription depends on the strength of TCR signaling and subsequent capacity to overcome restrictions imposed by chromatin hypoacetylation. In vivo Ag-experienced T cells show a higher basal probability to transcribe IL-10 when compared with naive cells, yet still show mostly monoallelic IL-10 expression. Finally, statistical analysis on allelic expression data shows transcriptional independence between both alleles. We conclude that CD4+ T cells have a low probability for IL-10 allelic activation resulting in a predominantly monoallelic expression pattern, and that IL-10 expression appears to be stochastically regulated by controlling the frequency of expressing cells, rather than absolute protein levels per cell. author: - first_name: Dinis full_name: Calado, Dinis P last_name: Calado - first_name: Tiago full_name: Tiago Paixao id: 2C5658E6-F248-11E8-B48F-1D18A9856A87 last_name: Paixao orcid: 0000-0003-2361-3953 - first_name: Dan full_name: Holmberg, Dan last_name: Holmberg - first_name: Matthias full_name: Haury, Matthias last_name: Haury citation: ama: Calado D, Paixao T, Holmberg D, Haury M. Stochastic Monoallelic Expression of IL 10 in T Cells. Journal of Immunology. 2006;177(8):5358-5364. doi:10.4049/jimmunol.177.8.5358 apa: Calado, D., Paixao, T., Holmberg, D., & Haury, M. (2006). Stochastic Monoallelic Expression of IL 10 in T Cells. Journal of Immunology. American Association of Immunologists. https://doi.org/10.4049/jimmunol.177.8.5358 chicago: Calado, Dinis, Tiago Paixao, Dan Holmberg, and Matthias Haury. “Stochastic Monoallelic Expression of IL 10 in T Cells.” Journal of Immunology. American Association of Immunologists, 2006. https://doi.org/10.4049/jimmunol.177.8.5358 . ieee: D. Calado, T. Paixao, D. Holmberg, and M. Haury, “Stochastic Monoallelic Expression of IL 10 in T Cells,” Journal of Immunology, vol. 177, no. 8. American Association of Immunologists, pp. 5358–5364, 2006. ista: Calado D, Paixao T, Holmberg D, Haury M. 2006. Stochastic Monoallelic Expression of IL 10 in T Cells. Journal of Immunology. 177(8), 5358–5364. mla: Calado, Dinis, et al. “Stochastic Monoallelic Expression of IL 10 in T Cells.” Journal of Immunology, vol. 177, no. 8, American Association of Immunologists, 2006, pp. 5358–64, doi:10.4049/jimmunol.177.8.5358 . short: D. Calado, T. Paixao, D. Holmberg, M. Haury, Journal of Immunology 177 (2006) 5358–5364. date_created: 2018-12-11T12:00:11Z date_published: 2006-01-01T00:00:00Z date_updated: 2021-01-12T07:00:32Z day: '01' doi: '10.4049/jimmunol.177.8.5358 ' extern: 1 intvolume: ' 177' issue: '8' month: '01' page: 5358 - 5364 publication: Journal of Immunology publication_status: published publisher: American Association of Immunologists publist_id: '3864' quality_controlled: 0 status: public title: Stochastic Monoallelic Expression of IL 10 in T Cells type: journal_article volume: 177 year: '2006' ... --- _id: '2921' abstract: - lang: eng text: Most binocular stereo algorithms assume that all scene elements are visible from both cameras. Scene elements that are visible from only one camera, known as occlusions, pose an important challenge for stereo. Occlusions are important for segmentation, because they appear near discontinuities. However, stereo algorithms tend to ignore occlusions because of their difficulty. One reason is that occlusions require the input images to be treated symmetrically, which complicates the problem formulation. Worse, certain depth maps imply physically impossible scene configurations, and must be excluded from the output. In this chapter we approach the problem of binocular stereo with occlusions from an energy minimization viewpoint. We begin by reviewing traditional stereo methods that do not handle occlusions. If occlusions are ignored, it is easy to formulate the stereo problem as a pixel labeling problem, which leads to an energy function that is common in early vision. This kind of energy function can he minimized using graph cuts, which is a combinatorial optimization technique that has proven to be very effective for low-level vision problems. Motivated by this, we have designed two graph cut stereo algorithms that are designed to handle occlusions. These algorithms produce promising experimental results on real data with ground truth. author: - first_name: Vladimir full_name: Vladimir Kolmogorov id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87 last_name: Kolmogorov - first_name: Ramin full_name: Zabih, Ramin last_name: Zabih citation: ama: 'Kolmogorov V, Zabih R. Graph cut algorithms for binocular stereo with occlusions. In: Handbook of Mathematical Models in Computer Vision. Springer; 2006:423-427. doi:10.1007/0-387-28831-7_26' apa: Kolmogorov, V., & Zabih, R. (2006). Graph cut algorithms for binocular stereo with occlusions. In Handbook of Mathematical Models in Computer Vision (pp. 423–427). Springer. https://doi.org/10.1007/0-387-28831-7_26 chicago: Kolmogorov, Vladimir, and Ramin Zabih. “Graph Cut Algorithms for Binocular Stereo with Occlusions.” In Handbook of Mathematical Models in Computer Vision, 423–27. Springer, 2006. https://doi.org/10.1007/0-387-28831-7_26. ieee: V. Kolmogorov and R. Zabih, “Graph cut algorithms for binocular stereo with occlusions,” in Handbook of Mathematical Models in Computer Vision, Springer, 2006, pp. 423–427. ista: 'Kolmogorov V, Zabih R. 2006.Graph cut algorithms for binocular stereo with occlusions. In: Handbook of Mathematical Models in Computer Vision. , 423–427.' mla: Kolmogorov, Vladimir, and Ramin Zabih. “Graph Cut Algorithms for Binocular Stereo with Occlusions.” Handbook of Mathematical Models in Computer Vision, Springer, 2006, pp. 423–27, doi:10.1007/0-387-28831-7_26. short: V. Kolmogorov, R. Zabih, in:, Handbook of Mathematical Models in Computer Vision, Springer, 2006, pp. 423–427. date_created: 2018-12-11T12:00:21Z date_published: 2006-01-01T00:00:00Z date_updated: 2021-01-12T07:00:42Z day: '01' doi: 10.1007/0-387-28831-7_26 extern: 1 month: '01' page: 423 - 427 publication: Handbook of Mathematical Models in Computer Vision publication_status: published publisher: Springer publist_id: '3816' quality_controlled: 0 status: public title: Graph cut algorithms for binocular stereo with occlusions type: book_chapter year: '2006' ... --- _id: '3002' abstract: - lang: eng text: Arabidopsis thaliana is currently the most important model organism for basic molecular plant research. It is also a favourable model for developmental biology, as its embryogenesis follows a nearly invariant pattern of cell divisions and cell type specifications. Study of embryogenesis can involve genetic, physiological or biochemical approaches, but is always limited by the inaccessibility of the embryos which develop deep inside maternal tissue. Thus, for developmental studies, there is an increasing demand for methods which allow embryogenesis under artificial conditions, providing better accessibility to experimental manipulation. In this chapter, we address theoretical aspects of embryo culture, give some thoughts on which embryo culture system is suited best for which application and finally discuss three current methods which have been successfully used in Arabidopsis embryo culture. © 2006 Springer-Verlag Berlin Heidelberg. alternative_title: - Plant Cell Monographs author: - first_name: Michael full_name: Sauer, Michael last_name: Sauer - first_name: Jirí full_name: Jirí Friml id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 citation: ama: 'Sauer M, Friml J. In vitro culture of Arabidopsis embryos. In: Mujib A, Šamaj J, eds. Somatic Embryogenesis. Vol 2. Springer; 2006:343-354. doi:10.1007/7089_020' apa: Sauer, M., & Friml, J. (2006). In vitro culture of Arabidopsis embryos. In A. Mujib & J. Šamaj (Eds.), Somatic Embryogenesis (Vol. 2, pp. 343–354). Springer. https://doi.org/10.1007/7089_020 chicago: Sauer, Michael, and Jiří Friml. “In Vitro Culture of Arabidopsis Embryos.” In Somatic Embryogenesis, edited by Abdul Mujib and Jozef Šamaj, 2:343–54. Springer, 2006. https://doi.org/10.1007/7089_020. ieee: M. Sauer and J. Friml, “In vitro culture of Arabidopsis embryos,” in Somatic Embryogenesis, vol. 2, A. Mujib and J. Šamaj, Eds. Springer, 2006, pp. 343–354. ista: 'Sauer M, Friml J. 2006.In vitro culture of Arabidopsis embryos. In: Somatic Embryogenesis. Plant Cell Monographs, vol. 2, 343–354.' mla: Sauer, Michael, and Jiří Friml. “In Vitro Culture of Arabidopsis Embryos.” Somatic Embryogenesis, edited by Abdul Mujib and Jozef Šamaj, vol. 2, Springer, 2006, pp. 343–54, doi:10.1007/7089_020. short: M. Sauer, J. Friml, in:, A. Mujib, J. Šamaj (Eds.), Somatic Embryogenesis, Springer, 2006, pp. 343–354. date_created: 2018-12-11T12:00:48Z date_published: 2006-01-01T00:00:00Z date_updated: 2021-01-12T07:40:23Z day: '01' doi: 10.1007/7089_020 editor: - first_name: Abdul full_name: Mujib, Abdul last_name: Mujib - first_name: Jozef full_name: Šamaj, Jozef last_name: Šamaj extern: 1 intvolume: ' 2' month: '01' page: 343 - 354 publication: Somatic Embryogenesis publication_status: published publisher: Springer publist_id: '3699' quality_controlled: 0 status: public title: In vitro culture of Arabidopsis embryos type: book_chapter volume: 2 year: '2006' ... --- _id: '3012' abstract: - lang: eng text: Intercellular flow of the phytohormone auxin underpins multiple developmental processes in plants. Plant-specific pin-formed (PIN) proteins and several phosphoglycoprotein (PGP) transporters are crucial factors in auxin transport-related development, yet the molecular function of PINs remains unknown. Here, we show that PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. Conditional gain-of-function alleles and quantitative measurements of auxin accumulation in Arabidopsis and tobacco cultured cells revealed that the action of PINs in auxin efflux is distinct from PGP, rate-limiting, specific to auxins, and sensitive to auxin transport inhibitors. This suggests a direct involvement of PINs in catalyzing cellular auxin efflux. author: - first_name: Jan full_name: Petrášek, Jan last_name: Petrášek - first_name: Jozef full_name: Mravec, Jozef last_name: Mravec - first_name: Rodolphe full_name: Bouchard, Rodolphe last_name: Bouchard - first_name: Joshua full_name: Blakeslee, Joshua last_name: Blakeslee - first_name: Melinda F full_name: Melinda Abas id: 3CFB3B1C-F248-11E8-B48F-1D18A9856A87 last_name: Abas - first_name: Daniela full_name: Seifertová, Daniela last_name: Seifertová - first_name: Justyna full_name: Wiśniewska, Justyna last_name: Wiśniewska - first_name: Zerihun full_name: Tadele, Zerihun last_name: Tadele - first_name: Martin full_name: Kubeš, Martin last_name: Kubeš - first_name: Milada full_name: Čovanová, Milada last_name: Čovanová - first_name: Pankaj full_name: Dhonukshe, Pankaj last_name: Dhonukshe - first_name: Petr full_name: Skůpa, Petr last_name: Skůpa - first_name: Eva full_name: Eva Benková id: 38F4F166-F248-11E8-B48F-1D18A9856A87 last_name: Benková orcid: 0000-0002-8510-9739 - first_name: Lucie full_name: Perry, Lucie last_name: Perry - first_name: Pavel full_name: Křeček, Pavel last_name: Křeček - first_name: Ok full_name: Lee, Ok Ran last_name: Lee - first_name: Gerald full_name: Fink, Gerald R last_name: Fink - first_name: Markus full_name: Geisler, Markus last_name: Geisler - first_name: Angus full_name: Murphy, Angus S last_name: Murphy - first_name: Christian full_name: Luschnig, Christian last_name: Luschnig - first_name: Eva full_name: Zažímalová, Eva last_name: Zažímalová - first_name: Jirí full_name: Jirí Friml id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 citation: ama: Petrášek J, Mravec J, Bouchard R, et al. PIN proteins perform a rate-limiting function in cellular auxin efflux. Science. 2006;312(5775):914-918. doi:10.1126/science.1123542 apa: Petrášek, J., Mravec, J., Bouchard, R., Blakeslee, J., Abas, M. F., Seifertová, D., … Friml, J. (2006). PIN proteins perform a rate-limiting function in cellular auxin efflux. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1123542 chicago: Petrášek, Jan, Jozef Mravec, Rodolphe Bouchard, Joshua Blakeslee, Melinda F Abas, Daniela Seifertová, Justyna Wiśniewska, et al. “PIN Proteins Perform a Rate-Limiting Function in Cellular Auxin Efflux.” Science. American Association for the Advancement of Science, 2006. https://doi.org/10.1126/science.1123542. ieee: J. Petrášek et al., “PIN proteins perform a rate-limiting function in cellular auxin efflux,” Science, vol. 312, no. 5775. American Association for the Advancement of Science, pp. 914–918, 2006. ista: Petrášek J, Mravec J, Bouchard R, Blakeslee J, Abas MF, Seifertová D, Wiśniewska J, Tadele Z, Kubeš M, Čovanová M, Dhonukshe P, Skůpa P, Benková E, Perry L, Křeček P, Lee O, Fink G, Geisler M, Murphy A, Luschnig C, Zažímalová E, Friml J. 2006. PIN proteins perform a rate-limiting function in cellular auxin efflux. Science. 312(5775), 914–918. mla: Petrášek, Jan, et al. “PIN Proteins Perform a Rate-Limiting Function in Cellular Auxin Efflux.” Science, vol. 312, no. 5775, American Association for the Advancement of Science, 2006, pp. 914–18, doi:10.1126/science.1123542. short: J. Petrášek, J. Mravec, R. Bouchard, J. Blakeslee, M.F. Abas, D. Seifertová, J. Wiśniewska, Z. Tadele, M. Kubeš, M. Čovanová, P. Dhonukshe, P. Skůpa, E. Benková, L. Perry, P. Křeček, O. Lee, G. Fink, M. Geisler, A. Murphy, C. Luschnig, E. Zažímalová, J. Friml, Science 312 (2006) 914–918. date_created: 2018-12-11T12:00:51Z date_published: 2006-05-12T00:00:00Z date_updated: 2021-01-12T07:40:27Z day: '12' doi: 10.1126/science.1123542 extern: 1 intvolume: ' 312' issue: '5775' month: '05' page: 914 - 918 publication: Science publication_status: published publisher: American Association for the Advancement of Science publist_id: '3690' quality_controlled: 0 status: public title: PIN proteins perform a rate-limiting function in cellular auxin efflux type: journal_article volume: 312 year: '2006' ... --- _id: '3010' abstract: - lang: eng text: The formation of the leaf vascular pattern has fascinated biologists for centuries. In the early leaf primordium, complex networks of procambial cells emerge from homogeneous subepidermal tissue. The molecular nature of the underlying positional information is unknown, but various lines of evidence implicate gradually restricted transport routes of the plant hormone auxin in defining sites of procambium formation. Here we show that a crucial member of the AtPIN family of auxin-efflux-associated proteins, AtPIN1, is expressed prior to pre-procambial and procambial cell fate markers in domains that become restricted toward sites of procambium formation. Subcellular AtPIN1 polarity indicates that auxin is directed to distinct "convergence points" in the epidermis, from where it defines the positions of major veins. Integrated polarities in all emerging veins indicate auxin drainage toward pre-existing veins, but veins display divergent polarities as they become connected at both ends. Auxin application and transport inhibition reveal that convergence point positioning and AtPIN1 expression domain dynamics are self-organizing, auxin-transport-dependent processes. We derive a model for self-regulated, reiterative patterning of all vein orders and postulate at its onset a common epidermal auxin-focusing mechanism for major-vein positioning and phyllotactic patterning. author: - first_name: Enrico full_name: Scarpella, Enrico last_name: Scarpella - first_name: Danielle full_name: Marcos, Danielle last_name: Marcos - first_name: Jirí full_name: Jirí Friml id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 - first_name: Thomas full_name: Berleth, Thomas last_name: Berleth citation: ama: Scarpella E, Marcos D, Friml J, Berleth T. Control of leaf vascular patterning by polar auxin transport. Genes and Development. 2006;20(8):1015-1027. doi:10.1101/gad.1402406 apa: Scarpella, E., Marcos, D., Friml, J., & Berleth, T. (2006). Control of leaf vascular patterning by polar auxin transport. Genes and Development. Cold Spring Harbor Laboratory Press. https://doi.org/10.1101/gad.1402406 chicago: Scarpella, Enrico, Danielle Marcos, Jiří Friml, and Thomas Berleth. “Control of Leaf Vascular Patterning by Polar Auxin Transport.” Genes and Development. Cold Spring Harbor Laboratory Press, 2006. https://doi.org/10.1101/gad.1402406. ieee: E. Scarpella, D. Marcos, J. Friml, and T. Berleth, “Control of leaf vascular patterning by polar auxin transport,” Genes and Development, vol. 20, no. 8. Cold Spring Harbor Laboratory Press, pp. 1015–1027, 2006. ista: Scarpella E, Marcos D, Friml J, Berleth T. 2006. Control of leaf vascular patterning by polar auxin transport. Genes and Development. 20(8), 1015–1027. mla: Scarpella, Enrico, et al. “Control of Leaf Vascular Patterning by Polar Auxin Transport.” Genes and Development, vol. 20, no. 8, Cold Spring Harbor Laboratory Press, 2006, pp. 1015–27, doi:10.1101/gad.1402406. short: E. Scarpella, D. Marcos, J. Friml, T. Berleth, Genes and Development 20 (2006) 1015–1027. date_created: 2018-12-11T12:00:51Z date_published: 2006-04-15T00:00:00Z date_updated: 2021-01-12T07:40:26Z day: '15' doi: 10.1101/gad.1402406 extern: 1 intvolume: ' 20' issue: '8' month: '04' page: 1015 - 1027 publication: Genes and Development publication_status: published publisher: Cold Spring Harbor Laboratory Press publist_id: '3692' quality_controlled: 0 status: public title: Control of leaf vascular patterning by polar auxin transport type: journal_article volume: 20 year: '2006' ... --- _id: '3007' abstract: - lang: eng text: Root gravitropism describes the orientation of root growth along the gravity vector and is mediated by differential cell elongation in the root meristem. This response requires the coordinated, asymmetric distribution of the phytohormone auxin within the root meristem, and depends on the concerted activities of PIN proteins and AUX1 - members of the auxin transport pathway. Here, we show that intracellular trafficking and proteasome activity combine to control PIN2 degradation during root gravitropism. Following gravi-stimulation, proteasome-dependent variations in PIN2 localization and degradation at the upper and lower sides of the root result in asymmetric distribution of PIN2. Ubiquitination of PIN2 occurs in a proteasome-dependent manner, indicating that the proteasome is involved in the control of PIN2 turnover. Stabilization of PIN2 affects its abundance and distribution, and leads to defects in auxin distribution and gravitropic responses. We describe the effects of auxin on PIN2 localization and protein levels, indicating that redistribution of auxin during the gravitropic response may be involved in the regulation of PIN2 protein. author: - first_name: Lindy full_name: Abas, Lindy last_name: Abas - first_name: René full_name: Benjamins, René last_name: Benjamins - first_name: Nenad full_name: Malenica, Nenad last_name: Malenica - first_name: Tomasz full_name: Paciorek, Tomasz last_name: Paciorek - first_name: Justyna full_name: Wiśniewska, Justyna last_name: Wiśniewska - first_name: Jeanette full_name: Moulinier-Anzola, Jeanette C last_name: Moulinier Anzola - first_name: Tobias full_name: Sieberer, Tobias last_name: Sieberer - first_name: Jirí full_name: Jirí Friml id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 - first_name: Christian full_name: Luschnig, Christian last_name: Luschnig citation: ama: Abas L, Benjamins R, Malenica N, et al. Intracellular trafficking and proteolysis of the Arabidopsis auxin-efflux facilitator PIN2 are involved in root gravitropism. Nature Cell Biology. 2006;8(3):249-256. doi:10.1038/ncb1369 apa: Abas, L., Benjamins, R., Malenica, N., Paciorek, T., Wiśniewska, J., Moulinier Anzola, J., … Luschnig, C. (2006). Intracellular trafficking and proteolysis of the Arabidopsis auxin-efflux facilitator PIN2 are involved in root gravitropism. Nature Cell Biology. Nature Publishing Group. https://doi.org/10.1038/ncb1369 chicago: Abas, Lindy, René Benjamins, Nenad Malenica, Tomasz Paciorek, Justyna Wiśniewska, Jeanette Moulinier Anzola, Tobias Sieberer, Jiří Friml, and Christian Luschnig. “Intracellular Trafficking and Proteolysis of the Arabidopsis Auxin-Efflux Facilitator PIN2 Are Involved in Root Gravitropism.” Nature Cell Biology. Nature Publishing Group, 2006. https://doi.org/10.1038/ncb1369. ieee: L. Abas et al., “Intracellular trafficking and proteolysis of the Arabidopsis auxin-efflux facilitator PIN2 are involved in root gravitropism,” Nature Cell Biology, vol. 8, no. 3. Nature Publishing Group, pp. 249–256, 2006. ista: Abas L, Benjamins R, Malenica N, Paciorek T, Wiśniewska J, Moulinier Anzola J, Sieberer T, Friml J, Luschnig C. 2006. Intracellular trafficking and proteolysis of the Arabidopsis auxin-efflux facilitator PIN2 are involved in root gravitropism. Nature Cell Biology. 8(3), 249–256. mla: Abas, Lindy, et al. “Intracellular Trafficking and Proteolysis of the Arabidopsis Auxin-Efflux Facilitator PIN2 Are Involved in Root Gravitropism.” Nature Cell Biology, vol. 8, no. 3, Nature Publishing Group, 2006, pp. 249–56, doi:10.1038/ncb1369. short: L. Abas, R. Benjamins, N. Malenica, T. Paciorek, J. Wiśniewska, J. Moulinier Anzola, T. Sieberer, J. Friml, C. Luschnig, Nature Cell Biology 8 (2006) 249–256. date_created: 2018-12-11T12:00:50Z date_published: 2006-03-01T00:00:00Z date_updated: 2021-01-12T07:40:25Z day: '01' doi: 10.1038/ncb1369 extern: 1 intvolume: ' 8' issue: '3' month: '03' page: 249 - 256 publication: Nature Cell Biology publication_status: published publisher: Nature Publishing Group publist_id: '3694' quality_controlled: 0 status: public title: Intracellular trafficking and proteolysis of the Arabidopsis auxin-efflux facilitator PIN2 are involved in root gravitropism type: journal_article volume: 8 year: '2006' ... --- _id: '3006' abstract: - lang: eng text: 'Dividing plant cells perform a remarkable task of building a new cell wall within the cytoplasm in a few minutes. A long-standing paradigm claims that this primordial cell wall, known as the cell plate, is generated by delivery of newly synthesized material from Golgi apparatus-originated secretory vesicles. Here, we show that, in diverse plant species, cell surface material, including plasma membrane proteins, cell wall components, and exogenously applied endocytic tracers, is rapidly delivered to the forming cell plate. Importantly, this occurs even when de novo protein synthesis is blocked. In addition, cytokinesis-specific syntaxin KNOLLE as well as plasma membrane (PM) resident proteins localize to endosomes that fuse to initiate the cell plate. The rate of endocytosis is strongly enhanced during cell plate formation, and its genetic or pharmacological inhibition leads to cytokinesis defects. Our results reveal that endocytic delivery of cell surface material significantly contributes to cell plate formation during plant cytokinesis. ' author: - first_name: Pankaj full_name: Dhonukshe, Pankaj last_name: Dhonukshe - first_name: František full_name: Baluška, František last_name: Baluška - first_name: Markus full_name: Schlicht, Markus last_name: Schlicht - first_name: Andrej full_name: Hlavacka, Andrej last_name: Hlavacka - first_name: Jozef full_name: Šamaj, Jozef last_name: Šamaj - first_name: Jirí full_name: Jirí Friml id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 - first_name: Theodorus full_name: Gadella, Theodorus W last_name: Gadella citation: ama: Dhonukshe P, Baluška F, Schlicht M, et al. Endocytosis of cell surface material mediates cell plate formation during plant cytokinesis. Developmental Cell. 2006;10(1):137-150. doi:10.1016/j.devcel.2005.11.015 apa: Dhonukshe, P., Baluška, F., Schlicht, M., Hlavacka, A., Šamaj, J., Friml, J., & Gadella, T. (2006). Endocytosis of cell surface material mediates cell plate formation during plant cytokinesis. Developmental Cell. Cell Press. https://doi.org/10.1016/j.devcel.2005.11.015 chicago: Dhonukshe, Pankaj, František Baluška, Markus Schlicht, Andrej Hlavacka, Jozef Šamaj, Jiří Friml, and Theodorus Gadella. “Endocytosis of Cell Surface Material Mediates Cell Plate Formation during Plant Cytokinesis.” Developmental Cell. Cell Press, 2006. https://doi.org/10.1016/j.devcel.2005.11.015. ieee: P. Dhonukshe et al., “Endocytosis of cell surface material mediates cell plate formation during plant cytokinesis,” Developmental Cell, vol. 10, no. 1. Cell Press, pp. 137–150, 2006. ista: Dhonukshe P, Baluška F, Schlicht M, Hlavacka A, Šamaj J, Friml J, Gadella T. 2006. Endocytosis of cell surface material mediates cell plate formation during plant cytokinesis. Developmental Cell. 10(1), 137–150. mla: Dhonukshe, Pankaj, et al. “Endocytosis of Cell Surface Material Mediates Cell Plate Formation during Plant Cytokinesis.” Developmental Cell, vol. 10, no. 1, Cell Press, 2006, pp. 137–50, doi:10.1016/j.devcel.2005.11.015. short: P. Dhonukshe, F. Baluška, M. Schlicht, A. Hlavacka, J. Šamaj, J. Friml, T. Gadella, Developmental Cell 10 (2006) 137–150. date_created: 2018-12-11T12:00:49Z date_published: 2006-01-01T00:00:00Z date_updated: 2021-01-12T07:40:24Z day: '01' doi: 10.1016/j.devcel.2005.11.015 extern: 1 intvolume: ' 10' issue: '1' month: '01' page: 137 - 150 publication: Developmental Cell publication_status: published publisher: Cell Press publist_id: '3696' quality_controlled: 0 status: public title: Endocytosis of cell surface material mediates cell plate formation during plant cytokinesis type: journal_article volume: 10 year: '2006' ... --- _id: '3011' abstract: - lang: eng text: Polar flow of the phytohormone auxin requires plasma membrane‐associated PIN proteins and underlies multiple developmental processes in plants. Here we address the importance of the polarity of subcellular PIN localization for the directionality of auxin transport in Arabidopsis thaliana. Expression of different PINs in the root epidermis revealed the importance of PIN polar positions for directional auxin flow and root gravitropic growth. Interfering with sequence-embedded polarity signals directly demonstrates that PIN polarity is a primary factor in determining the direction of auxin flow in meristematic tissues. This finding provides a crucial piece in the puzzle of how auxin flow can be redirected via rapid changes in PIN polarity. author: - first_name: Justyna full_name: Wiśniewska, Justyna last_name: Wiśniewska - first_name: Jian full_name: Xu, Jian last_name: Xu - first_name: Daniela full_name: Seifertová, Daniela last_name: Seifertová - first_name: Philip full_name: Brewer, Philip B last_name: Brewer - first_name: Kamil full_name: Růžička, Kamil last_name: Růžička - first_name: Ikram full_name: Blilou, Ikram last_name: Blilou - first_name: David full_name: Rouquié, David last_name: Rouquié - first_name: Eva full_name: Eva Benková id: 38F4F166-F248-11E8-B48F-1D18A9856A87 last_name: Benková orcid: 0000-0002-8510-9739 - first_name: Ben full_name: Scheres, Ben last_name: Scheres - first_name: Jirí full_name: Jirí Friml id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 citation: ama: Wiśniewska J, Xu J, Seifertová D, et al. Polar PIN localization directs auxin flow in plants. Science. 2006;312(5775). doi:10.1126/science.1121356 apa: Wiśniewska, J., Xu, J., Seifertová, D., Brewer, P., Růžička, K., Blilou, I., … Friml, J. (2006). Polar PIN localization directs auxin flow in plants. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1121356 chicago: Wiśniewska, Justyna, Jian Xu, Daniela Seifertová, Philip Brewer, Kamil Růžička, Ikram Blilou, David Rouquié, Eva Benková, Ben Scheres, and Jiří Friml. “Polar PIN Localization Directs Auxin Flow in Plants.” Science. American Association for the Advancement of Science, 2006. https://doi.org/10.1126/science.1121356. ieee: J. Wiśniewska et al., “Polar PIN localization directs auxin flow in plants,” Science, vol. 312, no. 5775. American Association for the Advancement of Science, 2006. ista: Wiśniewska J, Xu J, Seifertová D, Brewer P, Růžička K, Blilou I, Rouquié D, Benková E, Scheres B, Friml J. 2006. Polar PIN localization directs auxin flow in plants. Science. 312(5775). mla: Wiśniewska, Justyna, et al. “Polar PIN Localization Directs Auxin Flow in Plants.” Science, vol. 312, no. 5775, American Association for the Advancement of Science, 2006, doi:10.1126/science.1121356. short: J. Wiśniewska, J. Xu, D. Seifertová, P. Brewer, K. Růžička, I. Blilou, D. Rouquié, E. Benková, B. Scheres, J. Friml, Science 312 (2006). date_created: 2018-12-11T12:00:51Z date_published: 2006-05-12T00:00:00Z date_updated: 2021-01-12T07:40:27Z day: '12' doi: 10.1126/science.1121356 extern: 1 intvolume: ' 312' issue: '5775' month: '05' publication: Science publication_status: published publisher: American Association for the Advancement of Science publist_id: '3691' quality_controlled: 0 status: public title: Polar PIN localization directs auxin flow in plants type: journal_article volume: 312 year: '2006' ... --- _id: '3005' author: - first_name: Jirí full_name: Friml, Jirí id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 - first_name: Philip full_name: Benfey, Philip last_name: Benfey - first_name: Eva full_name: Benková, Eva id: 38F4F166-F248-11E8-B48F-1D18A9856A87 last_name: Benková orcid: 0000-0002-8510-9739 - first_name: Malcolm full_name: Bennett, Malcolm last_name: Bennett - first_name: Thomas full_name: Berleth, Thomas last_name: Berleth - first_name: Niko full_name: Geldner, Niko last_name: Geldner - first_name: Markus full_name: Grebe, Markus last_name: Grebe - first_name: Marcus full_name: Heisler, Marcus last_name: Heisler - first_name: Jan full_name: Hejátko, Jan last_name: Hejátko - first_name: Gerd full_name: Jürgens, Gerd last_name: Jürgens - first_name: Thomas full_name: Laux, Thomas last_name: Laux - first_name: Keith full_name: Lindsey, Keith last_name: Lindsey - first_name: Wolfgang full_name: Lukowitz, Wolfgang last_name: Lukowitz - first_name: Christian full_name: Luschnig, Christian last_name: Luschnig - first_name: Remko full_name: Offringa, Remko last_name: Offringa - first_name: Ben full_name: Scheres, Ben last_name: Scheres - first_name: Ranjan full_name: Swarup, Ranjan last_name: Swarup - first_name: Ramón full_name: Torres Ruiz, Ramón last_name: Torres Ruiz - first_name: Dolf full_name: Weijers, Dolf last_name: Weijers - first_name: Eva full_name: Zažímalová, Eva last_name: Zažímalová citation: ama: 'Friml J, Benfey P, Benková E, et al. Apical-basal polarity: Why plant cells don’t stand on their heads. Trends in Plant Science. 2006;11(1):12-14. doi:10.1016/j.tplants.2005.11.010' apa: 'Friml, J., Benfey, P., Benková, E., Bennett, M., Berleth, T., Geldner, N., … Zažímalová, E. (2006). Apical-basal polarity: Why plant cells don’t stand on their heads. Trends in Plant Science. Cell Press. https://doi.org/10.1016/j.tplants.2005.11.010' chicago: 'Friml, Jiří, Philip Benfey, Eva Benková, Malcolm Bennett, Thomas Berleth, Niko Geldner, Markus Grebe, et al. “Apical-Basal Polarity: Why Plant Cells Don’t Stand on Their Heads.” Trends in Plant Science. Cell Press, 2006. https://doi.org/10.1016/j.tplants.2005.11.010.' ieee: 'J. Friml et al., “Apical-basal polarity: Why plant cells don’t stand on their heads,” Trends in Plant Science, vol. 11, no. 1. Cell Press, pp. 12–14, 2006.' ista: 'Friml J, Benfey P, Benková E, Bennett M, Berleth T, Geldner N, Grebe M, Heisler M, Hejátko J, Jürgens G, Laux T, Lindsey K, Lukowitz W, Luschnig C, Offringa R, Scheres B, Swarup R, Torres Ruiz R, Weijers D, Zažímalová E. 2006. Apical-basal polarity: Why plant cells don’t stand on their heads. Trends in Plant Science. 11(1), 12–14.' mla: 'Friml, Jiří, et al. “Apical-Basal Polarity: Why Plant Cells Don’t Stand on Their Heads.” Trends in Plant Science, vol. 11, no. 1, Cell Press, 2006, pp. 12–14, doi:10.1016/j.tplants.2005.11.010.' short: J. Friml, P. Benfey, E. Benková, M. Bennett, T. Berleth, N. Geldner, M. Grebe, M. Heisler, J. Hejátko, G. Jürgens, T. Laux, K. Lindsey, W. Lukowitz, C. Luschnig, R. Offringa, B. Scheres, R. Swarup, R. Torres Ruiz, D. Weijers, E. Zažímalová, Trends in Plant Science 11 (2006) 12–14. date_created: 2018-12-11T12:00:49Z date_published: 2006-01-01T00:00:00Z date_updated: 2021-01-12T07:40:24Z day: '01' doi: 10.1016/j.tplants.2005.11.010 extern: '1' intvolume: ' 11' issue: '1' language: - iso: eng month: '01' oa_version: None page: 12 - 14 publication: Trends in Plant Science publication_status: published publisher: Cell Press publist_id: '3697' status: public title: 'Apical-basal polarity: Why plant cells don''t stand on their heads' type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 11 year: '2006' ... --- _id: '3008' abstract: - lang: eng text: Plants and some animals have a profound capacity to regenerate organs from adult tissues. Molecular mechanisms for regeneration have, however, been largely unexplored. Here we investigate a local regeneration response in Arabidopsis roots. Laser-induced wounding disrupts the flow of auxin-a cell-fate-instructive plant hormone-in root tips, and we demonstrate that resulting cell-fate changes require the PLETHORA, SHORTROOT, and SCARECROW transcription factors. These transcription factors regulate the expression and polar position of PIN auxin efflux-facilitating membrane proteins to reconstitute auxin transport in renewed root tips. Thus, a regeneration mechanism using embryonic root stem-cell patterning factors first responds to and subsequently stabilizes a new hormone distribution. author: - first_name: Jian full_name: Xu, Jian last_name: Xu - first_name: Hugo full_name: Hofhuis, Hugo last_name: Hofhuis - first_name: Renze full_name: Heidstra, Renze last_name: Heidstra - first_name: Michael full_name: Sauer, Michael last_name: Sauer - first_name: Jirí full_name: Jirí Friml id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 - first_name: Ben full_name: Scheres, Ben last_name: Scheres citation: ama: Xu J, Hofhuis H, Heidstra R, Sauer M, Friml J, Scheres B. A molecular framework for plant regeneration. Science. 2006;311(5759):385-388. doi:10.1126/science.1121790 apa: Xu, J., Hofhuis, H., Heidstra, R., Sauer, M., Friml, J., & Scheres, B. (2006). A molecular framework for plant regeneration. Science. American Association for the Advancement of Science. https://doi.org/10.1126/science.1121790 chicago: Xu, Jian, Hugo Hofhuis, Renze Heidstra, Michael Sauer, Jiří Friml, and Ben Scheres. “A Molecular Framework for Plant Regeneration.” Science. American Association for the Advancement of Science, 2006. https://doi.org/10.1126/science.1121790. ieee: J. Xu, H. Hofhuis, R. Heidstra, M. Sauer, J. Friml, and B. Scheres, “A molecular framework for plant regeneration,” Science, vol. 311, no. 5759. American Association for the Advancement of Science, pp. 385–388, 2006. ista: Xu J, Hofhuis H, Heidstra R, Sauer M, Friml J, Scheres B. 2006. A molecular framework for plant regeneration. Science. 311(5759), 385–388. mla: Xu, Jian, et al. “A Molecular Framework for Plant Regeneration.” Science, vol. 311, no. 5759, American Association for the Advancement of Science, 2006, pp. 385–88, doi:10.1126/science.1121790. short: J. Xu, H. Hofhuis, R. Heidstra, M. Sauer, J. Friml, B. Scheres, Science 311 (2006) 385–388. date_created: 2018-12-11T12:00:50Z date_published: 2006-01-20T00:00:00Z date_updated: 2021-01-12T07:40:25Z day: '20' doi: 10.1126/science.1121790 extern: 1 intvolume: ' 311' issue: '5759' month: '01' page: 385 - 388 publication: Science publication_status: published publisher: American Association for the Advancement of Science publist_id: '3695' quality_controlled: 0 status: public title: A molecular framework for plant regeneration type: journal_article volume: 311 year: '2006' ... --- _id: '3009' author: - first_name: Tomasz full_name: Paciorek, Tomasz last_name: Paciorek - first_name: Jirí full_name: Friml, Jirí id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 citation: ama: Paciorek T, Friml J. Auxin signaling. Journal of Cell Science. 2006;119(7):1199-1202. doi:10.1242/jcs.02910 apa: Paciorek, T., & Friml, J. (2006). Auxin signaling. Journal of Cell Science. Company of Biologists. https://doi.org/10.1242/jcs.02910 chicago: Paciorek, Tomasz, and Jiří Friml. “Auxin Signaling.” Journal of Cell Science. Company of Biologists, 2006. https://doi.org/10.1242/jcs.02910. ieee: T. Paciorek and J. Friml, “Auxin signaling,” Journal of Cell Science, vol. 119, no. 7. Company of Biologists, pp. 1199–1202, 2006. ista: Paciorek T, Friml J. 2006. Auxin signaling. Journal of Cell Science. 119(7), 1199–1202. mla: Paciorek, Tomasz, and Jiří Friml. “Auxin Signaling.” Journal of Cell Science, vol. 119, no. 7, Company of Biologists, 2006, pp. 1199–202, doi:10.1242/jcs.02910. short: T. Paciorek, J. Friml, Journal of Cell Science 119 (2006) 1199–1202. date_created: 2018-12-11T12:00:50Z date_published: 2006-01-01T00:00:00Z date_updated: 2021-01-12T07:40:25Z day: '01' doi: 10.1242/jcs.02910 extern: '1' external_id: pmid: - ' 16554435' intvolume: ' 119' issue: '7' language: - iso: eng main_file_link: - open_access: '1' url: https://www.ncbi.nlm.nih.gov/pubmed/16554435 month: '01' oa: 1 oa_version: Published Version page: 1199 - 1202 pmid: 1 publication: Journal of Cell Science publication_status: published publisher: Company of Biologists publist_id: '3693' quality_controlled: '1' status: public title: Auxin signaling type: journal_article user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87 volume: 119 year: '2006' ... --- _id: '3016' abstract: - lang: eng text: Plant development is characterized by a profound ability to regenerate and form tissues with new axes of polarity. An unsolved question concerns how the position within a tissue and cues from neighboring cells are integrated to specify the polarity of individual cells. The canalization hypothesis proposes a feedback effect of the phytohormone auxin on the directionality of intercellular auxin flow as a means to polarize tissues. Here we identify a cellular and molecular mechanism for canalization. Local auxin application, wounding, or auxin accumulation during de novo organ formation lead to rearrangements in the subcellular polar localization of PIN auxin transport components. This auxin effect on PIN polarity is cell-specific, does not depend on PIN transcription, and involves the Aux/IAA-ARF (indole-3-acetic acid-auxin response factor) signaling pathway. Our data suggest that auxin acts as polarizing cue, which links individual cell polarity with tissue and organ polarity through control of PIN polar targeting. This feedback regulation provides a conceptual framework for polarization during multiple regenerative and patterning processes in plants. article_processing_charge: No author: - first_name: Michael full_name: Sauer, Michael last_name: Sauer - first_name: Jozef full_name: Balla, Jozef last_name: Balla - first_name: Christian full_name: Luschnig, Christian last_name: Luschnig - first_name: Justyna full_name: Wiśniewska, Justyna last_name: Wiśniewska - first_name: Vilém full_name: Reinöhl, Vilém last_name: Reinöhl - first_name: Jirí full_name: Friml, Jirí id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 - first_name: Eva full_name: Benková, Eva id: 38F4F166-F248-11E8-B48F-1D18A9856A87 last_name: Benková orcid: 0000-0002-8510-9739 citation: ama: Sauer M, Balla J, Luschnig C, et al. Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity. Genes and Development. 2006;20(20):2902-2911. doi:10.1101/gad.390806 apa: Sauer, M., Balla, J., Luschnig, C., Wiśniewska, J., Reinöhl, V., Friml, J., & Benková, E. (2006). Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity. Genes and Development. Cold Spring Harbor Laboratory Press. https://doi.org/10.1101/gad.390806 chicago: Sauer, Michael, Jozef Balla, Christian Luschnig, Justyna Wiśniewska, Vilém Reinöhl, Jiří Friml, and Eva Benková. “Canalization of Auxin Flow by Aux/IAA-ARF-Dependent Feedback Regulation of PIN Polarity.” Genes and Development. Cold Spring Harbor Laboratory Press, 2006. https://doi.org/10.1101/gad.390806. ieee: M. Sauer et al., “Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity,” Genes and Development, vol. 20, no. 20. Cold Spring Harbor Laboratory Press, pp. 2902–2911, 2006. ista: Sauer M, Balla J, Luschnig C, Wiśniewska J, Reinöhl V, Friml J, Benková E. 2006. Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity. Genes and Development. 20(20), 2902–2911. mla: Sauer, Michael, et al. “Canalization of Auxin Flow by Aux/IAA-ARF-Dependent Feedback Regulation of PIN Polarity.” Genes and Development, vol. 20, no. 20, Cold Spring Harbor Laboratory Press, 2006, pp. 2902–11, doi:10.1101/gad.390806. short: M. Sauer, J. Balla, C. Luschnig, J. Wiśniewska, V. Reinöhl, J. Friml, E. Benková, Genes and Development 20 (2006) 2902–2911. date_created: 2018-12-11T12:00:53Z date_published: 2006-10-15T00:00:00Z date_updated: 2021-11-16T07:53:09Z day: '15' doi: 10.1101/gad.390806 extern: '1' intvolume: ' 20' issue: '20' language: - iso: eng month: '10' oa_version: None page: 2902 - 2911 publication: Genes and Development publication_status: published publisher: Cold Spring Harbor Laboratory Press publist_id: '3686' related_material: link: - relation: erratum url: http://genesdev.cshlp.org/content/21/11/1431.short status: public title: Canalization of auxin flow by Aux/IAA-ARF-dependent feedback regulation of PIN polarity type: journal_article user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9 volume: 20 year: '2006' ... --- _id: '3017' abstract: - lang: eng text: The plant hormone auxin plays crucial roles in regulating plant growth development, including embryo and root patterning, organ formation, vascular tissue differentiation and growth responses to environmental stimuli. Asymmetric auxin distribution patterns have been observed within tissues, and these so-called auxin gradients change dynamically during different developmental processes. Most auxin is synthesized in the shoot and distributed directionally throughout the plant. This polar auxin transport is mediated by auxin influx and efflux facilitators, whose subcellular polar localizations guide the direction of auxin flow. The polar localization of PIN auxin efflux carriers changes in response to developmental and external cues in order to channel auxin flow in a regulated manner for organized growth. Auxin itself modulates the expression and subcellular localization of PIN proteins, contributing to a complex pattern of feedback regulation. Here we review the available information mainly from studies of a model plant, Arabidopsis thaliana, on the generation of auxin gradients, the regulation of polar auxin transport and further downstream cellular events. author: - first_name: Hirokazu full_name: Tanaka, Hirokazu last_name: Tanaka - first_name: Pankaj full_name: Dhonukshe, Pankaj last_name: Dhonukshe - first_name: Philip full_name: Brewer, Philip last_name: Brewer - first_name: Jirí full_name: Friml, Jirí id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 citation: ama: 'Tanaka H, Dhonukshe P, Brewer P, Friml J. Spatiotemporal asymmetric auxin distribution: A means to coordinate plant development. Cellular and Molecular Life Sciences. 2006;63(23):2738-2754. doi:10.1007/s00018-006-6116-5' apa: 'Tanaka, H., Dhonukshe, P., Brewer, P., & Friml, J. (2006). Spatiotemporal asymmetric auxin distribution: A means to coordinate plant development. Cellular and Molecular Life Sciences. Birkhäuser. https://doi.org/10.1007/s00018-006-6116-5' chicago: 'Tanaka, Hirokazu, Pankaj Dhonukshe, Philip Brewer, and Jiří Friml. “Spatiotemporal Asymmetric Auxin Distribution: A Means to Coordinate Plant Development.” Cellular and Molecular Life Sciences. Birkhäuser, 2006. https://doi.org/10.1007/s00018-006-6116-5.' ieee: 'H. Tanaka, P. Dhonukshe, P. Brewer, and J. Friml, “Spatiotemporal asymmetric auxin distribution: A means to coordinate plant development,” Cellular and Molecular Life Sciences, vol. 63, no. 23. Birkhäuser, pp. 2738–2754, 2006.' ista: 'Tanaka H, Dhonukshe P, Brewer P, Friml J. 2006. Spatiotemporal asymmetric auxin distribution: A means to coordinate plant development. Cellular and Molecular Life Sciences. 63(23), 2738–2754.' mla: 'Tanaka, Hirokazu, et al. “Spatiotemporal Asymmetric Auxin Distribution: A Means to Coordinate Plant Development.” Cellular and Molecular Life Sciences, vol. 63, no. 23, Birkhäuser, 2006, pp. 2738–54, doi:10.1007/s00018-006-6116-5.' short: H. Tanaka, P. Dhonukshe, P. Brewer, J. Friml, Cellular and Molecular Life Sciences 63 (2006) 2738–2754. date_created: 2018-12-11T12:00:53Z date_published: 2006-12-01T00:00:00Z date_updated: 2021-01-12T07:40:29Z day: '01' doi: 10.1007/s00018-006-6116-5 extern: '1' intvolume: ' 63' issue: '23' language: - iso: eng month: '12' oa_version: None page: 2738 - 2754 publication: Cellular and Molecular Life Sciences publication_status: published publisher: Birkhäuser publist_id: '3685' quality_controlled: '1' status: public title: 'Spatiotemporal asymmetric auxin distribution: A means to coordinate plant development' type: journal_article user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87 volume: 63 year: '2006' ... --- _id: '3018' abstract: - lang: eng text: The directional flow of the plant hormone auxin mediates multiple developmental processes, including patterning and tropisms. Apical and basal plasma membrane localization of AUXIN-RESISTANT1 (AUX1) and PIN-FORMED1 (PIN1) auxin transport components underpins the directionality of intercellular auxin flow in Arabidopsis thaliana roots. Here, we examined the mechanism of polar trafficking of AUX1. Real-time live cell analysis along with subcellular markers revealed that AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Plasma membrane and intracellular pools of AUX1 are interconnected by actin-dependent constitutive trafficking, which is not sensitive to the vesicle trafficking inhibitor brefeldin A. AUX1 subcellular dynamics are not influenced by the auxin influx inhibitor NOA but are blocked by the auxin efflux inhibitors TIBA and PBA. Furthermore, auxin transport inhibitors and interference with the sterol composition of membranes disrupt polar AUX1 distribution at the plasma membrane. Compared with PIN1 trafficking, AUX1 dynamics display different sensitivities to trafficking inhibitors and are independent of the endosomal trafficking regulator ARF GEF GNOM. Hence, AUX1 uses a novel trafficking pathway in plants that is distinct from PIN trafficking, providing an additional mechanism for the fine regulation of auxin transport. author: - first_name: Jürgen full_name: Kleine-Vehn, Jürgen last_name: Kleine Vehn - first_name: Pankaj full_name: Dhonukshe, Pankaj last_name: Dhonukshe - first_name: Ranjan full_name: Swarup, Ranjan last_name: Swarup - first_name: Malcolm full_name: Bennett, Malcolm last_name: Bennett - first_name: Jirí full_name: Jirí Friml id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 citation: ama: Kleine Vehn J, Dhonukshe P, Swarup R, Bennett M, Friml J. Subcellular trafficking of the Arabidopsis auxin influx carrier AUX1 uses a novel pathway distinct from PIN1. Plant Cell. 2006;18(11):3171-3181. doi:10.1105/tpc.106.042770 apa: Kleine Vehn, J., Dhonukshe, P., Swarup, R., Bennett, M., & Friml, J. (2006). Subcellular trafficking of the Arabidopsis auxin influx carrier AUX1 uses a novel pathway distinct from PIN1. Plant Cell. American Society of Plant Biologists. https://doi.org/10.1105/tpc.106.042770 chicago: Kleine Vehn, Jürgen, Pankaj Dhonukshe, Ranjan Swarup, Malcolm Bennett, and Jiří Friml. “Subcellular Trafficking of the Arabidopsis Auxin Influx Carrier AUX1 Uses a Novel Pathway Distinct from PIN1.” Plant Cell. American Society of Plant Biologists, 2006. https://doi.org/10.1105/tpc.106.042770. ieee: J. Kleine Vehn, P. Dhonukshe, R. Swarup, M. Bennett, and J. Friml, “Subcellular trafficking of the Arabidopsis auxin influx carrier AUX1 uses a novel pathway distinct from PIN1,” Plant Cell, vol. 18, no. 11. American Society of Plant Biologists, pp. 3171–3181, 2006. ista: Kleine Vehn J, Dhonukshe P, Swarup R, Bennett M, Friml J. 2006. Subcellular trafficking of the Arabidopsis auxin influx carrier AUX1 uses a novel pathway distinct from PIN1. Plant Cell. 18(11), 3171–3181. mla: Kleine Vehn, Jürgen, et al. “Subcellular Trafficking of the Arabidopsis Auxin Influx Carrier AUX1 Uses a Novel Pathway Distinct from PIN1.” Plant Cell, vol. 18, no. 11, American Society of Plant Biologists, 2006, pp. 3171–81, doi:10.1105/tpc.106.042770. short: J. Kleine Vehn, P. Dhonukshe, R. Swarup, M. Bennett, J. Friml, Plant Cell 18 (2006) 3171–3181. date_created: 2018-12-11T12:00:53Z date_published: 2006-11-01T00:00:00Z date_updated: 2021-01-12T07:40:29Z day: '01' doi: 10.1105/tpc.106.042770 extern: 1 intvolume: ' 18' issue: '11' month: '11' page: 3171 - 3181 publication: Plant Cell publication_status: published publisher: American Society of Plant Biologists publist_id: '3684' quality_controlled: 0 status: public title: Subcellular trafficking of the Arabidopsis auxin influx carrier AUX1 uses a novel pathway distinct from PIN1 type: journal_article volume: 18 year: '2006' ... --- _id: '3020' abstract: - lang: eng text: High throughput microarray transcription analyses provide us with the expression profiles for large amounts of plant genes. However, their tissue and cellular resolution is limited. Thus, for detailed functional analysis, it is still necessary to examine the expression pattern of selected candidate genes at a cellular level. Here, we present an in situ mRNA hybridization method that is routinely used for the analysis of plant gene expression patterns. The protocol is optimized for whole mount mRNA localizations in Arabidopsis seedling tissues including embryos, roots, hypocotyls and young primary leaves. It can also be used for comparable tissues in other species. Part of the protocol can also be automated and performed by a liquid handling robot. Here we present a detailed protocol, recommended controls and troubleshooting, along with examples of several applications. The total time to carry out the entire procedure is ∼7 d, depending on the tissue used. author: - first_name: Jan full_name: Hejátko, Jan last_name: Hejátko - first_name: Ikram full_name: Blilou, Ikram last_name: Blilou - first_name: Philip full_name: Brewer, Philip B last_name: Brewer - first_name: Jirí full_name: Jirí Friml id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 - first_name: Ben full_name: Scheres, Ben last_name: Scheres - first_name: Eva full_name: Eva Benková id: 38F4F166-F248-11E8-B48F-1D18A9856A87 last_name: Benková orcid: 0000-0002-8510-9739 citation: ama: Hejátko J, Blilou I, Brewer P, Friml J, Scheres B, Benková E. In situ hybridization technique for mRNA detection in whole mount Arabidopsis samples. Nature Protocols. 2006;1(4):1939-1946. doi:10.1038/nprot.2006.333 apa: Hejátko, J., Blilou, I., Brewer, P., Friml, J., Scheres, B., & Benková, E. (2006). In situ hybridization technique for mRNA detection in whole mount Arabidopsis samples. Nature Protocols. Nature Publishing Group. https://doi.org/10.1038/nprot.2006.333 chicago: Hejátko, Jan, Ikram Blilou, Philip Brewer, Jiří Friml, Ben Scheres, and Eva Benková. “In Situ Hybridization Technique for MRNA Detection in Whole Mount Arabidopsis Samples.” Nature Protocols. Nature Publishing Group, 2006. https://doi.org/10.1038/nprot.2006.333. ieee: J. Hejátko, I. Blilou, P. Brewer, J. Friml, B. Scheres, and E. Benková, “In situ hybridization technique for mRNA detection in whole mount Arabidopsis samples,” Nature Protocols, vol. 1, no. 4. Nature Publishing Group, pp. 1939–1946, 2006. ista: Hejátko J, Blilou I, Brewer P, Friml J, Scheres B, Benková E. 2006. In situ hybridization technique for mRNA detection in whole mount Arabidopsis samples. Nature Protocols. 1(4), 1939–1946. mla: Hejátko, Jan, et al. “In Situ Hybridization Technique for MRNA Detection in Whole Mount Arabidopsis Samples.” Nature Protocols, vol. 1, no. 4, Nature Publishing Group, 2006, pp. 1939–46, doi:10.1038/nprot.2006.333. short: J. Hejátko, I. Blilou, P. Brewer, J. Friml, B. Scheres, E. Benková, Nature Protocols 1 (2006) 1939–1946. date_created: 2018-12-11T12:00:54Z date_published: 2006-11-01T00:00:00Z date_updated: 2021-01-12T07:40:30Z day: '01' doi: 10.1038/nprot.2006.333 extern: 1 intvolume: ' 1' issue: '4' month: '11' page: 1939 - 1946 publication: Nature Protocols publication_status: published publisher: Nature Publishing Group publist_id: '3683' quality_controlled: 0 status: public title: In situ hybridization technique for mRNA detection in whole mount Arabidopsis samples type: journal_article volume: 1 year: '2006' ... --- _id: '3015' abstract: - lang: eng text: 'As the field of plant molecular biology is swiftly advancing, a need has been created for methods that allow rapid and reliable in situ localization of proteins in plant cells. Here we describe a whole-mount ''immunolocalization'' technique for various plant tissues, including roots, hypocotyls, cotyledons, young primary leaves and embryos of Arabidopsis thaliana and other species. The detailed protocol, recommended controls and troubleshooting are presented, along with examples of applications. The protocol consists of five main procedures: tissue fixation, tissue permeation, blocking, primary and secondary antibody incubation. Notably, the first procedure (tissue fixation) includes several steps (4-12) that are absolutely necessary for protein localization in hypocotyls, cotyledons and young primary leaves but should be omitted for other tissues. The protocol is usually done in 3 days, but could also be completed in 2 days.' author: - first_name: Michael full_name: Sauer, Michael last_name: Sauer - first_name: Tomasz full_name: Paciorek, Tomasz last_name: Paciorek - first_name: Eva full_name: Eva Benková id: 38F4F166-F248-11E8-B48F-1D18A9856A87 last_name: Benková orcid: 0000-0002-8510-9739 - first_name: Jirí full_name: Jirí Friml id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 citation: ama: Sauer M, Paciorek T, Benková E, Friml J. Immunocytochemical techniques for whole mount in situ protein localization in plants. Nature Protocols. 2006;1(1):98-103. doi:10.1038/nprot.2006.15 apa: Sauer, M., Paciorek, T., Benková, E., & Friml, J. (2006). Immunocytochemical techniques for whole mount in situ protein localization in plants. Nature Protocols. Nature Publishing Group. https://doi.org/10.1038/nprot.2006.15 chicago: Sauer, Michael, Tomasz Paciorek, Eva Benková, and Jiří Friml. “Immunocytochemical Techniques for Whole Mount in Situ Protein Localization in Plants.” Nature Protocols. Nature Publishing Group, 2006. https://doi.org/10.1038/nprot.2006.15. ieee: M. Sauer, T. Paciorek, E. Benková, and J. Friml, “Immunocytochemical techniques for whole mount in situ protein localization in plants,” Nature Protocols, vol. 1, no. 1. Nature Publishing Group, pp. 98–103, 2006. ista: Sauer M, Paciorek T, Benková E, Friml J. 2006. Immunocytochemical techniques for whole mount in situ protein localization in plants. Nature Protocols. 1(1), 98–103. mla: Sauer, Michael, et al. “Immunocytochemical Techniques for Whole Mount in Situ Protein Localization in Plants.” Nature Protocols, vol. 1, no. 1, Nature Publishing Group, 2006, pp. 98–103, doi:10.1038/nprot.2006.15. short: M. Sauer, T. Paciorek, E. Benková, J. Friml, Nature Protocols 1 (2006) 98–103. date_created: 2018-12-11T12:00:52Z date_published: 2006-06-01T00:00:00Z date_updated: 2021-01-12T07:40:28Z day: '01' doi: 10.1038/nprot.2006.15 extern: 1 intvolume: ' 1' issue: '1' month: '06' page: 98 - 103 publication: Nature Protocols publication_status: published publisher: Nature Publishing Group publist_id: '3688' quality_controlled: 0 status: public title: Immunocytochemical techniques for whole mount in situ protein localization in plants type: journal_article volume: 1 year: '2006' ... --- _id: '3013' abstract: - lang: eng text: 'There is a growing demand for methods that allow rapid and reliable in situ localization of proteins in plant cells. The immunocytochemistry protocol presented here can be used routinely to observe protein localization patterns in tissue sections of various plant species. This protocol is especially suitable for plant species with more-complex tissue architecture (such as maize, Zea mays), which makes it difficult to use an easier whole-mount procedure for protein localization. To facilitate the antibody-antigen reaction, it is necessary to include a wax-embedding and tissue-sectioning step. The protocol consists of the following procedures: chemical fixation of tissue, dehydration, wax embedding, sectioning, dewaxing, rehydration, blocking and antibody incubation. The detailed protocol, recommended controls and troubleshooting are presented here, along with examples of applications.' author: - first_name: Tomasz full_name: Paciorek, Tomasz last_name: Paciorek - first_name: Michael full_name: Sauer, Michael last_name: Sauer - first_name: Jozef full_name: Balla, Jozef last_name: Balla - first_name: Justyna full_name: Wiśniewska, Justyna last_name: Wiśniewska - first_name: Jirí full_name: Jirí Friml id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 citation: ama: Paciorek T, Sauer M, Balla J, Wiśniewska J, Friml J. Immunocytochemical technique for protein localization in sections of plant tissues. Nature Protocols. 2006;1(1):104-107. doi:10.1038/nprot.2006.16 apa: Paciorek, T., Sauer, M., Balla, J., Wiśniewska, J., & Friml, J. (2006). Immunocytochemical technique for protein localization in sections of plant tissues. Nature Protocols. Nature Publishing Group. https://doi.org/10.1038/nprot.2006.16 chicago: Paciorek, Tomasz, Michael Sauer, Jozef Balla, Justyna Wiśniewska, and Jiří Friml. “Immunocytochemical Technique for Protein Localization in Sections of Plant Tissues.” Nature Protocols. Nature Publishing Group, 2006. https://doi.org/10.1038/nprot.2006.16. ieee: T. Paciorek, M. Sauer, J. Balla, J. Wiśniewska, and J. Friml, “Immunocytochemical technique for protein localization in sections of plant tissues,” Nature Protocols, vol. 1, no. 1. Nature Publishing Group, pp. 104–107, 2006. ista: Paciorek T, Sauer M, Balla J, Wiśniewska J, Friml J. 2006. Immunocytochemical technique for protein localization in sections of plant tissues. Nature Protocols. 1(1), 104–107. mla: Paciorek, Tomasz, et al. “Immunocytochemical Technique for Protein Localization in Sections of Plant Tissues.” Nature Protocols, vol. 1, no. 1, Nature Publishing Group, 2006, pp. 104–07, doi:10.1038/nprot.2006.16. short: T. Paciorek, M. Sauer, J. Balla, J. Wiśniewska, J. Friml, Nature Protocols 1 (2006) 104–107. date_created: 2018-12-11T12:00:52Z date_published: 2006-06-01T00:00:00Z date_updated: 2021-01-12T07:40:27Z day: '01' doi: 10.1038/nprot.2006.16 extern: 1 intvolume: ' 1' issue: '1' month: '06' page: 104 - 107 publication: Nature Protocols publication_status: published publisher: Nature Publishing Group publist_id: '3689' quality_controlled: 0 status: public title: Immunocytochemical technique for protein localization in sections of plant tissues type: journal_article volume: 1 year: '2006' ... --- _id: '3014' abstract: - lang: eng text: Plant biology is currently confronted with an overflow of expression profile data provided by high-throughput microarray transcription analyses. However, the tissue and cellular resolution of these techniques is limited. Thus, it is still necessary to examine the expression pattern of selected candidate genes at a cellular level. Here we present an in situ mRNA hybridization method that is routinely used in the analysis of gene expression patterns. The protocol is optimized for mRNA localizations in sectioned tissue of Arabidopsis seedlings including embryos, roots, hypocotyls, young primary leaves and flowers. The detailed protocol, recommended controls and troubleshooting are presented along with examples of application. The total time for the process is 10 days. author: - first_name: Philip full_name: Brewer, Philip B last_name: Brewer - first_name: Marcus full_name: Heisler, Marcus G last_name: Heisler - first_name: Jan full_name: Hejátko, Jan last_name: Hejátko - first_name: Jirí full_name: Jirí Friml id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 - first_name: Eva full_name: Eva Benková id: 38F4F166-F248-11E8-B48F-1D18A9856A87 last_name: Benková orcid: 0000-0002-8510-9739 citation: ama: Brewer P, Heisler M, Hejátko J, Friml J, Benková E. In situ hybridization for mRNA detection in Arabidopsis tissue sections. Nature Protocols. 2006;1(3):1462-1467. doi:10.1038/nprot.2006.226 apa: Brewer, P., Heisler, M., Hejátko, J., Friml, J., & Benková, E. (2006). In situ hybridization for mRNA detection in Arabidopsis tissue sections. Nature Protocols. Nature Publishing Group. https://doi.org/10.1038/nprot.2006.226 chicago: Brewer, Philip, Marcus Heisler, Jan Hejátko, Jiří Friml, and Eva Benková. “In Situ Hybridization for MRNA Detection in Arabidopsis Tissue Sections.” Nature Protocols. Nature Publishing Group, 2006. https://doi.org/10.1038/nprot.2006.226. ieee: P. Brewer, M. Heisler, J. Hejátko, J. Friml, and E. Benková, “In situ hybridization for mRNA detection in Arabidopsis tissue sections,” Nature Protocols, vol. 1, no. 3. Nature Publishing Group, pp. 1462–1467, 2006. ista: Brewer P, Heisler M, Hejátko J, Friml J, Benková E. 2006. In situ hybridization for mRNA detection in Arabidopsis tissue sections. Nature Protocols. 1(3), 1462–1467. mla: Brewer, Philip, et al. “In Situ Hybridization for MRNA Detection in Arabidopsis Tissue Sections.” Nature Protocols, vol. 1, no. 3, Nature Publishing Group, 2006, pp. 1462–67, doi:10.1038/nprot.2006.226. short: P. Brewer, M. Heisler, J. Hejátko, J. Friml, E. Benková, Nature Protocols 1 (2006) 1462–1467. date_created: 2018-12-11T12:00:52Z date_published: 2006-08-01T00:00:00Z date_updated: 2021-01-12T07:40:28Z day: '01' doi: 10.1038/nprot.2006.226 extern: 1 intvolume: ' 1' issue: '3' month: '08' page: 1462 - 1467 publication: Nature Protocols publication_status: published publisher: Nature Publishing Group publist_id: '3687' quality_controlled: 0 status: public title: In situ hybridization for mRNA detection in Arabidopsis tissue sections type: journal_article volume: 1 year: '2006' ...