--- _id: '11653' abstract: - lang: eng text: Eurasian brine shrimp (genus Artemia) have closely related sexual and asexual lineages of parthenogenetic females, which produce rare males at low frequencies. Although they are known to have ZW chromosomes, these are not well characterized, and it is unclear whether they are shared across the clade. Furthermore, the underlying genetic architecture of the transmission of asexuality, which can occur when rare males mate with closely related sexual females, is not well understood. We produced a chromosome-level assembly for the sexual Eurasian species A. sinica and characterized in detail the pair of sex chromosomes of this species. We combined this new assembly with short-read genomic data for the sexual species A. sp. Kazakhstan and several asexual lineages of A. parthenogenetica, allowing us to perform an in-depth characterization of sex-chromosome evolution across the genus. We identified a small differentiated region of the ZW pair that is shared by all sexual and asexual lineages, supporting the shared ancestry of the sex chromosomes. We also inferred that recombination suppression has spread to larger sections of the chromosome independently in the American and Eurasian lineages. Finally, we took advantage of a rare male, which we backcrossed to sexual females, to explore the genetic basis of asexuality. Our results suggest that parthenogenesis is likely partly controlled by a locus on the Z chromosome, highlighting the interplay between sex determination and asexuality. article_processing_charge: No author: - first_name: Marwan N full_name: Elkrewi, Marwan N id: 0B46FACA-A8E1-11E9-9BD3-79D1E5697425 last_name: Elkrewi orcid: 0000-0002-5328-7231 citation: ama: Elkrewi MN. Data from Elkrewi, Khauratovich, Toups et al. 2022, “ZW sex-chromosome evolution and contagious parthenogenesis in Artemia brine shrimp.” 2022. doi:10.15479/AT:ISTA:11653 apa: Elkrewi, M. N. (2022). Data from Elkrewi, Khauratovich, Toups et al. 2022, “ZW sex-chromosome evolution and contagious parthenogenesis in Artemia brine shrimp.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:11653 chicago: Elkrewi, Marwan N. “Data from Elkrewi, Khauratovich, Toups et Al. 2022, ‘ZW Sex-Chromosome Evolution and Contagious Parthenogenesis in Artemia Brine Shrimp.’” Institute of Science and Technology Austria, 2022. https://doi.org/10.15479/AT:ISTA:11653. ieee: M. N. Elkrewi, “Data from Elkrewi, Khauratovich, Toups et al. 2022, ‘ZW sex-chromosome evolution and contagious parthenogenesis in Artemia brine shrimp.’” Institute of Science and Technology Austria, 2022. ista: Elkrewi MN. 2022. Data from Elkrewi, Khauratovich, Toups et al. 2022, ‘ZW sex-chromosome evolution and contagious parthenogenesis in Artemia brine shrimp’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:11653. mla: Elkrewi, Marwan N. Data from Elkrewi, Khauratovich, Toups et Al. 2022, “ZW Sex-Chromosome Evolution and Contagious Parthenogenesis in Artemia Brine Shrimp.” Institute of Science and Technology Austria, 2022, doi:10.15479/AT:ISTA:11653. short: M.N. Elkrewi, (2022). contributor: - first_name: Marwan N id: 0B46FACA-A8E1-11E9-9BD3-79D1E5697425 last_name: Elkrewi orcid: 0000-0002-5328-7231 - first_name: Uladzislava last_name: Khauratovich - first_name: Melissa A id: 4E099E4E-F248-11E8-B48F-1D18A9856A87 last_name: Toups - first_name: Vincent K id: 57854184-AAE0-11E9-8D04-98D6E5697425 last_name: Bett - first_name: Andrea id: 353FAC84-AE61-11E9-8BFC-00D3E5697425 last_name: Mrnjavac - first_name: Ariana id: 2A0848E2-F248-11E8-B48F-1D18A9856A87 last_name: Macon - first_name: Christelle id: 32DF5794-F248-11E8-B48F-1D18A9856A87 last_name: Fraisse orcid: 0000-0001-8441-5075 - first_name: Luca last_name: Sax - first_name: Ann K id: 4C0A3874-F248-11E8-B48F-1D18A9856A87 last_name: Huylmans - first_name: Francisco last_name: 'Hontoria ' - first_name: Beatriz id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87 last_name: Vicoso orcid: 0000-0002-4579-8306 date_created: 2022-07-26T11:01:47Z date_published: 2022-08-05T00:00:00Z date_updated: 2024-02-21T12:35:53Z day: '05' ddc: - '570' department: - _id: GradSch - _id: BeVi doi: 10.15479/AT:ISTA:11653 file: - access_level: open_access checksum: 5f1d7c6d7ab5375ed2564521432bed0c content_type: application/x-zip-compressed creator: melkrewi date_created: 2022-07-26T12:37:52Z date_updated: 2022-08-08T22:30:04Z description: | The folder contains the following datasets (fasta files, and text files): Sup. Dataset 1: Genome assemblies: A. sinica male high quality assembly, A. sp. Kazakhstan male draft assembly Sup. Dataset 2: Male transcriptome assemblies for A. sinica and A. franciscana Sup. Dataset 3: Male and female coverage for A. sinica, A. sp. Kazakhstan, A. urmiana, and A. parthenogenetica females and rare male. Sup. Dataset 4: Artemia sinica Male:female FST per 1Kb window Sup. Dataset 5: FASTA file with candidate W scaffolds Sup. Dataset 6: Candidate W-derived transcripts and alignments Sup. Dataset 7: Gene expression with genomic location Sup. Dataset 8: VCF for asexual female and rare male Sup. Dataset 9: FST between backcrossed asexual and control females (pooled analysis) Sup. Dataset 10: VCF of backcrossed asexual and control females (individual analysis using A. sp. Kazakhstan as the reference), and inferred ancestry Sup. Dataset 11: GO and DE annotations of all the Artemia sinica transcripts and their locations in the Artemia sinica male genome. embargo: 2022-08-07 file_id: '11655' file_name: Data.zip file_size: 2209382998 relation: main_file title: Supplementary Datasets file_date_updated: 2022-08-08T22:30:04Z has_accepted_license: '1' month: '08' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria related_material: record: - id: '12248' relation: used_in_publication status: public status: public title: Data from Elkrewi, Khauratovich, Toups et al. 2022, "ZW sex-chromosome evolution and contagious parthenogenesis in Artemia brine shrimp" tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2022' ... --- _id: '9291' abstract: - lang: eng text: "This .zip File contains the transport data for figures presented in the main text and supplementary material of \"Enhancement of Proximity Induced Superconductivity in Planar Germanium\" by K. Aggarwal, et. al. \r\nThe measurements were done using Labber Software and the data is stored in the hdf5 file format. The files can be opened using either the Labber Log Browser (https://labber.org/overview/) or Labber Python API (http://labber.org/online-doc/api/LogFile.html)." article_processing_charge: No author: - first_name: Georgios full_name: Katsaros, Georgios id: 38DB5788-F248-11E8-B48F-1D18A9856A87 last_name: Katsaros orcid: 0000-0001-8342-202X citation: ama: 'Katsaros G. Raw transport data for: Enhancement of proximity induced superconductivity in planar germanium. 2021. doi:10.15479/AT:ISTA:9291' apa: 'Katsaros, G. (2021). Raw transport data for: Enhancement of proximity induced superconductivity in planar germanium. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:9291' chicago: 'Katsaros, Georgios. “Raw Transport Data for: Enhancement of Proximity Induced Superconductivity in Planar Germanium.” Institute of Science and Technology Austria, 2021. https://doi.org/10.15479/AT:ISTA:9291.' ieee: 'G. Katsaros, “Raw transport data for: Enhancement of proximity induced superconductivity in planar germanium.” Institute of Science and Technology Austria, 2021.' ista: 'Katsaros G. 2021. Raw transport data for: Enhancement of proximity induced superconductivity in planar germanium, Institute of Science and Technology Austria, 10.15479/AT:ISTA:9291.' mla: 'Katsaros, Georgios. Raw Transport Data for: Enhancement of Proximity Induced Superconductivity in Planar Germanium. Institute of Science and Technology Austria, 2021, doi:10.15479/AT:ISTA:9291.' short: G. Katsaros, (2021). date_created: 2021-03-27T13:47:49Z date_published: 2021-03-29T00:00:00Z date_updated: 2024-02-21T12:37:14Z day: '29' ddc: - '530' department: - _id: GeKa doi: 10.15479/AT:ISTA:9291 file: - access_level: open_access checksum: 635df3c08fc13c3dac008cd421aefbe4 content_type: application/x-zip-compressed creator: gkatsaro date_created: 2021-03-27T13:46:17Z date_updated: 2021-03-27T13:46:17Z file_id: '9292' file_name: Raw Data- Enhancement of Superconductivity in a Planar Ge hole gas.zip file_size: 10616071 relation: main_file success: 1 - access_level: open_access checksum: 12b3ca69ae7509a346711baae0b02a75 content_type: text/plain creator: dernst date_created: 2021-04-01T07:52:56Z date_updated: 2021-04-01T07:52:56Z file_id: '9302' file_name: README.txt file_size: 470 relation: main_file success: 1 file_date_updated: 2021-04-01T07:52:56Z has_accepted_license: '1' license: https://creativecommons.org/publicdomain/zero/1.0/ month: '03' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria status: public title: 'Raw transport data for: Enhancement of proximity induced superconductivity in planar germanium' tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2021' ... --- _id: '9636' article_processing_charge: No author: - first_name: Andrew P full_name: Higginbotham, Andrew P id: 4AD6785A-F248-11E8-B48F-1D18A9856A87 last_name: Higginbotham orcid: 0000-0003-2607-2363 citation: ama: Higginbotham AP. Data for “Breakdown of induced p ± ip pairing in a superconductor-semiconductor hybrid.” 2021. apa: Higginbotham, A. P. (2021). Data for “Breakdown of induced p ± ip pairing in a superconductor-semiconductor hybrid.” Institute of Science and Technology Austria. chicago: Higginbotham, Andrew P. “Data for ‘Breakdown of Induced p ± Ip Pairing in a Superconductor-Semiconductor Hybrid.’” Institute of Science and Technology Austria, 2021. ieee: A. P. Higginbotham, “Data for ‘Breakdown of induced p ± ip pairing in a superconductor-semiconductor hybrid.’” Institute of Science and Technology Austria, 2021. ista: Higginbotham AP. 2021. Data for ‘Breakdown of induced p ± ip pairing in a superconductor-semiconductor hybrid’, Institute of Science and Technology Austria. mla: Higginbotham, Andrew P. Data for “Breakdown of Induced p ± Ip Pairing in a Superconductor-Semiconductor Hybrid.” Institute of Science and Technology Austria, 2021. short: A.P. Higginbotham, (2021). date_created: 2021-07-07T20:43:10Z date_published: 2021-01-01T00:00:00Z date_updated: 2024-02-21T12:36:52Z department: - _id: AnHi file: - access_level: open_access checksum: 18e90687ec7bbd75f8bfea4d8293fb30 content_type: application/zip creator: ahigginb date_created: 2021-07-07T20:37:28Z date_updated: 2021-07-07T20:37:28Z file_id: '9637' file_name: figures_data.zip file_size: 3345244 relation: main_file success: 1 file_date_updated: 2021-07-07T20:37:28Z has_accepted_license: '1' oa: 1 oa_version: Submitted Version publisher: Institute of Science and Technology Austria related_material: record: - id: '10029' relation: used_in_publication status: public status: public title: Data for "Breakdown of induced p ± ip pairing in a superconductor-semiconductor hybrid" tmp: image: /images/cc_by_nc.png legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) short: CC BY-NC (4.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2021' ... --- _id: '9323' abstract: - lang: eng text: This .zip File contains the data for figures presented in the main text and supplementary material of "A singlet triplet hole spin qubit in planar Ge" by D. Jirovec, et. al. The measurements were done using Labber Software and the data is stored in the hdf5 file format. The files can be opened using either the Labber Log Browser (https://labber.org/overview/) or Labber Python API (http://labber.org/online-doc/api/LogFile.html). A single file is acquired with QCodes and features the corresponding data type. XRD data are in .dat format and a code to open the data is provided. The code for simulations is as well provided in Python. article_processing_charge: No author: - first_name: Daniel full_name: Jirovec, Daniel id: 4C473F58-F248-11E8-B48F-1D18A9856A87 last_name: Jirovec orcid: 0000-0002-7197-4801 citation: ama: Jirovec D. Research data for “A singlet-triplet hole spin qubit planar Ge.” 2021. doi:10.15479/AT:ISTA:9323 apa: Jirovec, D. (2021). Research data for “A singlet-triplet hole spin qubit planar Ge.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:9323 chicago: Jirovec, Daniel. “Research Data for ‘A Singlet-Triplet Hole Spin Qubit Planar Ge.’” Institute of Science and Technology Austria, 2021. https://doi.org/10.15479/AT:ISTA:9323. ieee: D. Jirovec, “Research data for ‘A singlet-triplet hole spin qubit planar Ge.’” Institute of Science and Technology Austria, 2021. ista: Jirovec D. 2021. Research data for ‘A singlet-triplet hole spin qubit planar Ge’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:9323. mla: Jirovec, Daniel. Research Data for “A Singlet-Triplet Hole Spin Qubit Planar Ge.” Institute of Science and Technology Austria, 2021, doi:10.15479/AT:ISTA:9323. short: D. Jirovec, (2021). contributor: - contributor_type: project_member first_name: Daniel id: 4C473F58-F248-11E8-B48F-1D18A9856A87 last_name: Jirovec date_created: 2021-04-14T09:50:22Z date_published: 2021-04-14T00:00:00Z date_updated: 2024-02-21T12:39:15Z day: '14' ddc: - '530' department: - _id: GradSch - _id: GeKa doi: 10.15479/AT:ISTA:9323 file: - access_level: open_access checksum: c569d2a2ce1694445cdbca19cf8ae023 content_type: application/x-zip-compressed creator: djirovec date_created: 2021-04-14T09:48:47Z date_updated: 2021-04-14T09:48:47Z file_id: '9324' file_name: DataRepositorySTqubit.zip file_size: 221832287 relation: main_file success: 1 - access_level: open_access checksum: 845bdf87430718ad6aff47eda7b5fc92 content_type: application/octet-stream creator: djirovec date_created: 2021-04-14T09:49:30Z date_updated: 2021-04-14T09:49:30Z file_id: '9325' file_name: ReadMe file_size: 4323 relation: main_file success: 1 file_date_updated: 2021-04-14T09:49:30Z has_accepted_license: '1' month: '04' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria related_material: record: - id: '8909' relation: used_in_publication status: public status: public title: Research data for "A singlet-triplet hole spin qubit planar Ge" tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2021' ... --- _id: '9389' abstract: - lang: eng text: "This .zip File contains the transport data for \"Non-topological zero bias peaks in full-shell nanowires induced by flux tunable Andreev states\" by M. Valentini, et. al. \r\nThe measurements were done using Labber Software and the data is stored in the hdf5 file format.\r\nInstructions of how to read the data are in \"Notebook_Valentini.pdf\"." acknowledged_ssus: - _id: NanoFab article_processing_charge: No author: - first_name: Marco full_name: Valentini, Marco id: C0BB2FAC-D767-11E9-B658-BC13E6697425 last_name: Valentini citation: ama: Valentini M. Research data for “Non-topological zero bias peaks in full-shell nanowires induced by flux tunable Andreev states.” 2021. doi:10.15479/AT:ISTA:9389 apa: Valentini, M. (2021). Research data for “Non-topological zero bias peaks in full-shell nanowires induced by flux tunable Andreev states.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:9389 chicago: Valentini, Marco. “Research Data for ‘Non-Topological Zero Bias Peaks in Full-Shell Nanowires Induced by Flux Tunable Andreev States.’” Institute of Science and Technology Austria, 2021. https://doi.org/10.15479/AT:ISTA:9389. ieee: M. Valentini, “Research data for ‘Non-topological zero bias peaks in full-shell nanowires induced by flux tunable Andreev states.’” Institute of Science and Technology Austria, 2021. ista: Valentini M. 2021. Research data for ‘Non-topological zero bias peaks in full-shell nanowires induced by flux tunable Andreev states’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:9389. mla: Valentini, Marco. Research Data for “Non-Topological Zero Bias Peaks in Full-Shell Nanowires Induced by Flux Tunable Andreev States.” Institute of Science and Technology Austria, 2021, doi:10.15479/AT:ISTA:9389. short: M. Valentini, (2021). contributor: - contributor_type: contact_person first_name: Marco id: C0BB2FAC-D767-11E9-B658-BC13E6697425 last_name: Valentini date_created: 2021-05-14T12:07:53Z date_published: 2021-01-01T00:00:00Z date_updated: 2024-02-21T12:40:09Z ddc: - '530' department: - _id: GradSch - _id: GeKa doi: 10.15479/AT:ISTA:9389 file: - access_level: open_access checksum: 80a905c4eef24dab6fb247e81a3d67f5 content_type: application/pdf creator: mvalenti date_created: 2021-05-14T11:42:23Z date_updated: 2021-05-14T11:42:23Z file_id: '9390' file_name: Notebook_Valentini.pdf file_size: 10572981 relation: main_file - access_level: open_access checksum: 1e61a7e63949448a8db0091cdac23570 content_type: application/x-zip-compressed creator: mvalenti date_created: 2021-05-14T11:56:48Z date_updated: 2021-05-14T11:56:48Z file_id: '9391' file_name: Experimental_data.zip file_size: 99076111 relation: main_file file_date_updated: 2021-05-14T11:56:48Z has_accepted_license: '1' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria related_material: record: - id: '8910' relation: used_in_publication status: public status: public title: Research data for "Non-topological zero bias peaks in full-shell nanowires induced by flux tunable Andreev states" tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2021' ...