[{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["576"],"date_updated":"2024-02-26T09:59:29Z","citation":{"mla":"Elkrewi, Marwan N. Data from “Chromosome-Level Assembly of Artemia Franciscana Sheds Light on Sex-Chromosome Differentiation.” Institute of Science and Technology Austria, 2024, doi:10.15479/AT:ISTA:14705.","ieee":"M. N. Elkrewi, “Data from ‘Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation.’” Institute of Science and Technology Austria, 2024.","short":"M.N. Elkrewi, (2024).","ama":"Elkrewi MN. Data from “Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation.” 2024. doi:10.15479/AT:ISTA:14705","apa":"Elkrewi, M. N. (2024). Data from “Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:14705","chicago":"Elkrewi, Marwan N. “Data from ‘Chromosome-Level Assembly of Artemia Franciscana Sheds Light on Sex-Chromosome Differentiation.’” Institute of Science and Technology Austria, 2024. https://doi.org/10.15479/AT:ISTA:14705.","ista":"Elkrewi MN. 2024. Data from ‘Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:14705."},"file_date_updated":"2023-12-22T14:14:06Z","department":[{"_id":"GradSch"},{"_id":"BeVi"}],"title":"Data from \"Chromosome-level assembly of Artemia franciscana sheds light on sex-chromosome differentiation\"","author":[{"last_name":"Elkrewi","orcid":"0000-0002-5328-7231","full_name":"Elkrewi, Marwan N","first_name":"Marwan N","id":"0B46FACA-A8E1-11E9-9BD3-79D1E5697425"}],"article_processing_charge":"No","_id":"14705","project":[{"_id":"34ae1506-11ca-11ed-8bc3-c14f4c474396","name":"The highjacking of meiosis for asexual reproduction","grant_number":"F8810"}],"status":"public","keyword":["sex chromosome evolution","genome assembly","dosage compensation"],"type":"research_data","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"file":[{"content_type":"text/plain","access_level":"open_access","relation":"main_file","checksum":"bdaf1392867786634ec5466d528c36ca","file_id":"14707","success":1,"date_updated":"2023-12-22T13:54:21Z","file_size":847,"creator":"melkrewi","date_created":"2023-12-22T13:54:21Z","file_name":"readme.txt.txt"},{"file_name":"data_artemia_franciscana_genome.zip","date_created":"2023-12-22T14:14:06Z","file_size":343632753,"date_updated":"2023-12-22T14:14:06Z","creator":"melkrewi","success":1,"file_id":"14708","checksum":"973e1cbdab923a71709782177980829f","content_type":"application/x-zip-compressed","relation":"main_file","access_level":"open_access"}],"day":"02","has_accepted_license":"1","year":"2024","date_published":"2024-01-02T00:00:00Z","doi":"10.15479/AT:ISTA:14705","related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"15009"}]},"date_created":"2023-12-22T13:40:48Z","contributor":[{"last_name":"Bett","id":"57854184-AAE0-11E9-8D04-98D6E5697425","first_name":"Vincent K","contributor_type":"researcher"},{"contributor_type":"project_member","first_name":"Ariana","id":"2A0848E2-F248-11E8-B48F-1D18A9856A87","last_name":"Macon"},{"id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","contributor_type":"supervisor","first_name":"Beatriz","last_name":"Vicoso","orcid":"0000-0002-4579-8306"},{"first_name":"Marwan N","contributor_type":"researcher","id":"0B46FACA-A8E1-11E9-9BD3-79D1E5697425","orcid":"0000-0002-5328-7231","last_name":"Elkrewi"}],"oa_version":"Published Version","abstract":[{"lang":"eng","text":"Since the commercialization of brine shrimp (genus Artemia) in the 1950s, this lineage, and in particular the model species Artemia franciscana, has been the subject of extensive research. However, our understanding of the genetic mechanisms underlying various aspects of their reproductive biology, including sex determination, are still lacking. This is partly due to the scarcity of genomic resources for Artemia species and crustaceans in general. Here, we present a chromosome-level genome assembly of Artemia franciscana (Kellogg 1906), from the Great Salt Lake, USA. The genome is 1GB, and the majority of the genome (81%) is scaffolded into 21 linkage groups using a previously published high-density linkage map. We performed coverage and FST analyses using male and female genomic and transcriptomic reads to quantify the extent of differentiation between the Z and W chromosomes. Additionally, we quantified the expression levels in male and female heads and gonads and found further evidence for dosage compensation in this species."}],"month":"01","publisher":"Institute of Science and Technology Austria","oa":1},{"status":"public","type":"research_data","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","short":"CC BY-NC (4.0)"},"_id":"12820","title":"Research data of the publication \"Disulfide-bond-induced structural frustration and dynamic disorder in a peroxiredoxin from MAS NMR\"","file_date_updated":"2023-04-14T09:39:58Z","department":[{"_id":"PaSc"}],"author":[{"orcid":"0000-0002-9350-7606","full_name":"Schanda, Paul","last_name":"Schanda","id":"7B541462-FAF6-11E9-A490-E8DFE5697425","first_name":"Paul"}],"article_processing_charge":"No","ddc":["570"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ista":"Schanda P. 2023. Research data of the publication ‘Disulfide-bond-induced structural frustration and dynamic disorder in a peroxiredoxin from MAS NMR’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:12820.","chicago":"Schanda, Paul. “Research Data of the Publication ‘Disulfide-Bond-Induced Structural Frustration and Dynamic Disorder in a Peroxiredoxin from MAS NMR.’” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/AT:ISTA:12820.","short":"P. Schanda, (2023).","ieee":"P. Schanda, “Research data of the publication ‘Disulfide-bond-induced structural frustration and dynamic disorder in a peroxiredoxin from MAS NMR.’” Institute of Science and Technology Austria, 2023.","apa":"Schanda, P. (2023). Research data of the publication “Disulfide-bond-induced structural frustration and dynamic disorder in a peroxiredoxin from MAS NMR.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:12820","ama":"Schanda P. Research data of the publication “Disulfide-bond-induced structural frustration and dynamic disorder in a peroxiredoxin from MAS NMR.” 2023. doi:10.15479/AT:ISTA:12820","mla":"Schanda, Paul. Research Data of the Publication “Disulfide-Bond-Induced Structural Frustration and Dynamic Disorder in a Peroxiredoxin from MAS NMR.” Institute of Science and Technology Austria, 2023, doi:10.15479/AT:ISTA:12820."},"date_updated":"2023-08-01T14:48:08Z","month":"04","publisher":"Institute of Science and Technology Austria","oa":1,"oa_version":"Published Version","abstract":[{"text":"Disulfide bond formation is fundamentally important for protein structure, and constitutes a key mechanism by which cells regulate the intracellular oxidation state. Peroxiredoxins (PRDXs) eliminate reactive oxygen species such as hydrogen peroxide through a catalytic cycle of Cys oxidation and reduction. Additionally, upon Cys oxidation PRDXs undergo extensive conformational rearrangements that may underlie their presently structurally poorly defined functions as molecular chaperones. Rearrangements include high molecular-weight oligomerization, the dynamics of which are, however, poorly understood, as is the impact of disulfide bond formation on these properties. Here we show that formation of disulfide bonds along the catalytic cycle induces extensive microsecond time scale dynamics, as monitored by magic-angle spinning NMR of the 216 kDa-large Tsa1 decameric assembly and solution-NMR of a designed dimeric mutant. We ascribe the conformational dynamics to structural frustration, resulting from conflicts between the disulfide-constrained reduction of mobility and the desire to fulfil other favorable contacts. \r\n\r\nThis data repository contains NMR data presented in the associated manuscript","lang":"eng"}],"doi":"10.15479/AT:ISTA:12820","date_published":"2023-04-18T00:00:00Z","related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"13095"}]},"date_created":"2023-04-10T05:55:56Z","license":"https://creativecommons.org/licenses/by-nc/4.0/","contributor":[{"last_name":"Troussicot","contributor_type":"researcher","first_name":"Laura"},{"last_name":"Burmann","first_name":"Björn M.","contributor_type":"researcher"}],"file":[{"creator":"pschanda","file_size":54184807,"date_updated":"2023-04-14T09:39:33Z","file_name":"data_deposition.zip","date_created":"2023-04-14T09:39:33Z","relation":"main_file","access_level":"open_access","content_type":"application/zip","success":1,"checksum":"54a619605e44c871214fb0e07b05c6bf","file_id":"12823"},{"date_updated":"2023-04-14T09:39:58Z","file_size":4978,"creator":"pschanda","date_created":"2023-04-14T09:39:58Z","file_name":"README","content_type":"application/octet-stream","access_level":"open_access","relation":"main_file","file_id":"12824","checksum":"8dede9fc78399d13144eb05c62bf5750","success":1}],"day":"18","has_accepted_license":"1","year":"2023"},{"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nc/4.0/legalcode","image":"/images/cc_by_nc.png","name":"Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)","short":"CC BY-NC (4.0)"},"type":"research_data","keyword":["collective behavior","host-pathogen interactions","social immunity","epidemiology","social insects","probabilistic modeling"],"status":"public","_id":"12945","article_processing_charge":"No","author":[{"first_name":"Sylvia","id":"2F64EC8C-F248-11E8-B48F-1D18A9856A87","last_name":"Cremer","orcid":"0000-0002-2193-3868","full_name":"Cremer, Sylvia"}],"department":[{"_id":"SyCr"}],"title":"Data from: \"Dynamic pathogen detection and social feedback shape collective hygiene in ants\" ","file_date_updated":"2023-05-12T08:04:08Z","date_updated":"2023-08-07T13:09:09Z","citation":{"ista":"Cremer S. 2023. Data from: ‘Dynamic pathogen detection and social feedback shape collective hygiene in ants’ , Institute of Science and Technology Austria, 10.15479/AT:ISTA:12945.","chicago":"Cremer, Sylvia. “Data from: ‘Dynamic Pathogen Detection and Social Feedback Shape Collective Hygiene in Ants’ .” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/AT:ISTA:12945.","apa":"Cremer, S. (2023). Data from: “Dynamic pathogen detection and social feedback shape collective hygiene in ants” . Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:12945","ama":"Cremer S. Data from: “Dynamic pathogen detection and social feedback shape collective hygiene in ants” . 2023. doi:10.15479/AT:ISTA:12945","short":"S. Cremer, (2023).","ieee":"S. Cremer, “Data from: ‘Dynamic pathogen detection and social feedback shape collective hygiene in ants’ .” Institute of Science and Technology Austria, 2023.","mla":"Cremer, Sylvia. Data from: “Dynamic Pathogen Detection and Social Feedback Shape Collective Hygiene in Ants” . Institute of Science and Technology Austria, 2023, doi:10.15479/AT:ISTA:12945."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["570"],"oa":1,"publisher":"Institute of Science and Technology Austria","month":"05","acknowledged_ssus":[{"_id":"LifeSc"}],"abstract":[{"lang":"eng","text":"basic data for use in code for experimental data analysis for manuscript under revision: \r\nDynamic pathogen detection and social feedback shape collective hygiene in ants\r\nCasillas-Pérez B, Boďová K, Grasse AV, Tkačik G, Cremer S"}],"acknowledgement":"This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (Grant No. 771402; EPIDEMICSonCHIP) to SC, from the Scientific Grant Agency of the Slovak Republic (Grant No. 1/0521/20) to KB, and the Human Frontier Science Program (Grant No. RGP0065/2012) to GT.","oa_version":"None","date_created":"2023-05-11T21:35:17Z","contributor":[{"last_name":"Casillas Perez","id":"351ED2AA-F248-11E8-B48F-1D18A9856A87","contributor_type":"data_collector","first_name":"Barbara E"},{"id":"406F989C-F248-11E8-B48F-1D18A9856A87","first_name":"Anna V","contributor_type":"data_collector","last_name":"Grasse"},{"last_name":"Bodova","contributor_type":"researcher","first_name":"Katarina"},{"first_name":"Gašper","contributor_type":"supervisor","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","last_name":"Tkačik","orcid":"0000-0002-6699-1455"}],"date_published":"2023-05-12T00:00:00Z","doi":"10.15479/AT:ISTA:12945","related_material":{"record":[{"status":"public","id":"13127","relation":"used_in_publication"}]},"year":"2023","has_accepted_license":"1","day":"12","file":[{"content_type":"application/zip","relation":"main_file","access_level":"open_access","success":1,"checksum":"3eadf17fd59ad8c98bf10bf63061863c","file_id":"12947","file_size":3414674,"date_updated":"2023-05-12T08:04:04Z","creator":"scremer","file_name":"Experimental_data.zip","date_created":"2023-05-12T08:04:04Z"},{"success":1,"file_id":"12948","checksum":"1b5e8e01a0989154a76b44e6d8d68f89","content_type":"application/octet-stream","relation":"main_file","access_level":"open_access","file_name":"README_Experimental_Data.md","date_created":"2023-05-12T08:04:08Z","file_size":2113,"date_updated":"2023-05-12T08:04:08Z","creator":"scremer"}]},{"status":"public","project":[{"_id":"2564DBCA-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"International IST Doctoral Program","grant_number":"665385"},{"_id":"626c45b5-2b32-11ec-9570-e509828c1ba6","name":"Efficient coding with biophysical realism","grant_number":"P34015"},{"call_identifier":"H2020","_id":"2634E9D2-B435-11E9-9278-68D0E5697425","grant_number":"756502","name":"Circuits of Visual Attention"},{"name":"Neuronal networks of salience and spatial detection in the murine superior colliculus","grant_number":"LT000256","_id":"266D407A-B435-11E9-9278-68D0E5697425"},{"name":"Connecting sensory with motor processing in the superior colliculus","grant_number":"ALTF 1098-2017","_id":"264FEA02-B435-11E9-9278-68D0E5697425"}],"tmp":{"name":"Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)","image":"/images/cc_by_nc_sa.png","legal_code_url":"https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode","short":"CC BY-NC-SA (4.0)"},"type":"research_data","_id":"12370","title":"Research Data for: Panoramic visual statistics shape retina-wide organization of receptive fields","file_date_updated":"2023-01-26T10:51:34Z","department":[{"_id":"GradSch"},{"_id":"MaJö"}],"article_processing_charge":"No","author":[{"last_name":"Gupta","orcid":"0000-0001-7400-6665","full_name":"Gupta, Divyansh","first_name":"Divyansh","id":"2A485EBE-F248-11E8-B48F-1D18A9856A87"},{"first_name":"Anton L","id":"3320A096-F248-11E8-B48F-1D18A9856A87","full_name":"Sumser, Anton L","orcid":"0000-0002-4792-1881","last_name":"Sumser"},{"id":"2BD278E6-F248-11E8-B48F-1D18A9856A87","first_name":"Maximilian A","last_name":"Jösch","orcid":"0000-0002-3937-1330","full_name":"Jösch, Maximilian A"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["571"],"citation":{"chicago":"Gupta, Divyansh, Anton L Sumser, and Maximilian A Jösch. “Research Data for: Panoramic Visual Statistics Shape Retina-Wide Organization of Receptive Fields.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/AT:ISTA:12370.","ista":"Gupta D, Sumser AL, Jösch MA. 2023. Research Data for: Panoramic visual statistics shape retina-wide organization of receptive fields, Institute of Science and Technology Austria, 10.15479/AT:ISTA:12370.","mla":"Gupta, Divyansh, et al. Research Data for: Panoramic Visual Statistics Shape Retina-Wide Organization of Receptive Fields. Institute of Science and Technology Austria, 2023, doi:10.15479/AT:ISTA:12370.","ama":"Gupta D, Sumser AL, Jösch MA. Research Data for: Panoramic visual statistics shape retina-wide organization of receptive fields. 2023. doi:10.15479/AT:ISTA:12370","apa":"Gupta, D., Sumser, A. L., & Jösch, M. A. (2023). Research Data for: Panoramic visual statistics shape retina-wide organization of receptive fields. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:12370","short":"D. Gupta, A.L. Sumser, M.A. Jösch, (2023).","ieee":"D. Gupta, A. L. Sumser, and M. A. Jösch, “Research Data for: Panoramic visual statistics shape retina-wide organization of receptive fields.” Institute of Science and Technology Austria, 2023."},"date_updated":"2023-10-04T11:41:04Z","month":"01","oa":1,"publisher":"Institute of Science and Technology Austria","oa_version":"Published Version","acknowledged_ssus":[{"_id":"ScienComp"},{"_id":"M-Shop"},{"_id":"Bio"},{"_id":"PreCl"},{"_id":"LifeSc"}],"abstract":[{"lang":"eng","text":"Statistics of natural scenes are not uniform - their structure varies dramatically from ground to sky. It remains unknown whether these non-uniformities are reflected in the large-scale organization of the early visual system and what benefits such adaptations would confer. Here, by relying on the efficient coding hypothesis, we predict that changes in the structure of receptive fields across visual space increase the efficiency of sensory coding. We show experimentally that, in agreement with our predictions, receptive fields of retinal ganglion cells change their shape along the dorsoventral retinal axis, with a marked surround asymmetry at the visual horizon. Our work demonstrates that, according to principles of efficient coding, the panoramic structure of natural scenes is exploited by the retina across space and cell-types. 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F"},{"first_name":"Jan","id":"f7f724c3-9d6f-11ed-9f44-e5c5f3a5bee2","contributor_type":"researcher","last_name":"Svaton"}],"ec_funded":1,"related_material":{"record":[{"relation":"used_in_publication","id":"12349","status":"public"}]},"date_published":"2023-01-26T00:00:00Z","doi":"10.15479/AT:ISTA:12370","file":[{"date_created":"2023-01-26T10:51:34Z","file_name":"readme_exvivo.txt","date_updated":"2023-01-26T10:51:34Z","file_size":1917,"creator":"dgupta","checksum":"172cd1c315cbf063c122298396bc17a7","file_id":"12396","success":1,"content_type":"text/plain","access_level":"open_access","relation":"main_file"},{"file_id":"12397","checksum":"d3cecda51cad86b1182195731c01a14f","success":1,"content_type":"text/plain","access_level":"open_access","relation":"main_file","date_created":"2023-01-26T10:50:50Z","file_name":"readme_invivo.txt","date_updated":"2023-01-26T10:50:50Z","file_size":1585,"creator":"dgupta"},{"date_created":"2023-01-26T10:43:30Z","file_name":"exvivo_RFs.mat","date_updated":"2023-01-26T10:43:30Z","file_size":5019459775,"creator":"dgupta","file_id":"12398","checksum":"b85018b27f2c43a6d94ee0e8b841220d","success":1,"content_type":"application/octet-stream","access_level":"open_access","relation":"main_file"},{"relation":"main_file","access_level":"open_access","content_type":"application/octet-stream","success":1,"checksum":"f75dccd96a3f837cdeed65b5134e697e","file_id":"12399","creator":"dgupta","file_size":94999721,"date_updated":"2023-01-26T10:40:35Z","file_name":"RGC_in_vivo_RFs_selected.mat","date_created":"2023-01-26T10:40:35Z"},{"file_name":"invivo_BL6-eyeGC8m-dC-3_210924_1534_Result.mat","date_created":"2023-01-25T16:03:49Z","file_size":720893739,"date_updated":"2023-01-25T16:03:49Z","creator":"dgupta","success":1,"file_id":"12382","checksum":"d41836ffe03ea0efb677de31287c8d2e","content_type":"application/octet-stream","relation":"main_file","access_level":"open_access"},{"date_created":"2023-01-25T16:03:30Z","file_name":"invivo_BL6-eyeGC8m-dC-3_211026_1235_Result.mat","date_updated":"2023-01-25T16:03:30Z","file_size":248122209,"creator":"dgupta","file_id":"12383","checksum":"0a0cba5208241a95f9bb7684d0a43afa","success":1,"content_type":"application/octet-stream","access_level":"open_access","relation":"main_file"},{"relation":"main_file","access_level":"open_access","content_type":"application/octet-stream","success":1,"file_id":"12384","checksum":"cf72c1f325631212f305ff1a6d342bc3","creator":"dgupta","file_size":1757729346,"date_updated":"2023-01-25T16:04:54Z","file_name":"invivo_BL6-eyeGC8m-dC-3_211202_1505_Result.mat","date_created":"2023-01-25T16:04:54Z"},{"access_level":"open_access","relation":"main_file","content_type":"application/octet-stream","file_id":"12385","checksum":"f4cd25f37d433a7dced3aa8cc326c755","success":1,"creator":"dgupta","date_updated":"2023-01-25T16:04:41Z","file_size":1177344595,"date_created":"2023-01-25T16:04:41Z","file_name":"invivo_BL6-eyeGC8m-dC-3_211208_1738_Result.mat"},{"file_size":2246592895,"date_updated":"2023-01-25T16:06:22Z","creator":"dgupta","file_name":"invivo_BL6-eyeGC8m-dC-3_220111_1735_Result.mat","date_created":"2023-01-25T16:06:22Z","content_type":"application/octet-stream","relation":"main_file","access_level":"open_access","success":1,"file_id":"12386","checksum":"8c31637d447f2088fdb5ba1c6775f243"},{"creator":"dgupta","date_updated":"2023-01-25T16:07:41Z","file_size":2151341770,"date_created":"2023-01-25T16:07:41Z","file_name":"invivo_BL6-eyeGC8m-dC-4_220216_0950_Result.mat","access_level":"open_access","relation":"main_file","content_type":"application/octet-stream","file_id":"12387","checksum":"246d660ef06a9151c59b74490d991460","success":1},{"date_created":"2023-01-26T10:19:02Z","file_name":"invivo_BL6-eyeGC8m-dC-4_220428_1351_Result.mat","date_updated":"2023-01-26T10:19:02Z","file_size":3719145736,"creator":"dgupta","file_id":"12393","checksum":"b32987dd4589d05b9dfadb93d4178c0d","success":1,"content_type":"application/octet-stream","access_level":"open_access","relation":"main_file"},{"file_id":"12395","checksum":"6c88ca7d1df405f04002146d251dc22e","success":1,"content_type":"application/octet-stream","access_level":"open_access","relation":"main_file","date_created":"2023-01-26T10:34:46Z","file_name":"invivo_BL6-eyeGC8m-dC-4_220502_1357_Result.mat","date_updated":"2023-01-26T10:34:46Z","file_size":5818789752,"creator":"dgupta"},{"creator":"dgupta","file_size":2614677996,"date_updated":"2023-01-26T10:23:19Z","file_name":"invivo_BL6-eyeGC8m-dC-4_220524_1726_Result.mat","date_created":"2023-01-26T10:23:19Z","relation":"main_file","access_level":"open_access","content_type":"application/octet-stream","success":1,"file_id":"12394","checksum":"494057076bb0b0a28e4b7146bb50113c"},{"file_size":1840481462,"date_updated":"2023-01-25T16:20:51Z","creator":"dgupta","file_name":"invivo_BL6-eyeGC8m-dC-5_220613_1750_Result.mat","date_created":"2023-01-25T16:20:51Z","content_type":"application/octet-stream","relation":"main_file","access_level":"open_access","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of Science and Technology Austria","oa":1,"month":"05","abstract":[{"text":"The classical infinitesimal model is a simple and robust model for the inheritance of quantitative traits. In this model, a quantitative trait is expressed as the sum of a genetic and a non-genetic (environmental) component and the genetic component of offspring traits within a family follows a normal distribution around the average of the parents’ trait values, and has a variance that is independent of the trait values of the parents. Although the trait distribution across the whole population can be far from normal, the trait distributions within families are normally distributed with a variance-covariance matrix that is determined entirely by that in the ancestral population and the probabilities of identity determined by the pedigree. Moreover, conditioning on some of the trait values within the pedigree has predictable effects on the mean and variance within and between families. In previous work, Barton et al. (2017), we showed that when trait values are determined by the sum of a large number of Mendelian factors, each of small effect, one can justify the infinitesimal model as limit of Mendelian inheritance. It was also shown that under some forms of epistasis, trait values within a family are still normally distributed.","lang":"eng"}],"oa_version":"Published Version","doi":"10.15479/AT:ISTA:12949","related_material":{"record":[{"relation":"used_in_publication","status":"public","id":"14452"}]},"date_published":"2023-05-13T00:00:00Z","contributor":[{"first_name":"Amandine","contributor_type":"researcher","last_name":"Veber"},{"last_name":"Etheridge","contributor_type":"researcher","first_name":"Alison"}],"date_created":"2023-05-13T09:49:09Z","has_accepted_license":"1","year":"2023","day":"13","file":[{"date_created":"2023-05-13T09:36:33Z","file_name":"Neutral identities 16th Jan","creator":"nbarton","date_updated":"2023-05-13T09:36:33Z","file_size":13662,"checksum":"b0ce7d4b1ee7e7265430ceed36fc3336","file_id":"12950","success":1,"access_level":"open_access","relation":"main_file","content_type":"application/octet-stream"},{"content_type":"application/octet-stream","relation":"main_file","access_level":"open_access","success":1,"file_id":"12951","checksum":"ad5035ad4f7d3b150a252c79884f6a83","file_size":181619928,"date_updated":"2023-05-13T09:38:17Z","creator":"nbarton","file_name":"p, zA, zD, N=30 neutral III","date_created":"2023-05-13T09:38:17Z"},{"content_type":"application/octet-stream","access_level":"open_access","relation":"main_file","checksum":"62182a1de796256edd6f4223704312ef","file_id":"12952","success":1,"date_updated":"2023-05-13T09:41:59Z","file_size":605902074,"creator":"nbarton","date_created":"2023-05-13T09:41:59Z","file_name":"p, zA, zD, N=30 neutral IV"},{"file_id":"12953","checksum":"af775dda5c4f6859cb1e5a81ec40a667","success":1,"access_level":"open_access","relation":"main_file","content_type":"application/octet-stream","date_created":"2023-05-13T09:46:52Z","file_name":"p, zA, zD, N=30 selected k=5","creator":"nbarton","date_updated":"2023-05-13T09:46:52Z","file_size":1018238746},{"checksum":"af26f3394c387d3ada14b434cd68b1e5","file_id":"12954","success":1,"content_type":"application/octet-stream","access_level":"open_access","relation":"main_file","date_created":"2023-05-13T09:42:05Z","file_name":"Pairwise F N=30 neutral II","date_updated":"2023-05-13T09:42:05Z","file_size":3197160,"creator":"nbarton"},{"file_name":"Pedigrees N=30 neutral II","date_created":"2023-05-13T09:42:06Z","creator":"nbarton","file_size":55492,"date_updated":"2023-05-13T09:42:06Z","success":1,"checksum":"d5da7dc0e7282dd48222e26d12e34220","file_id":"12955","relation":"main_file","access_level":"open_access","content_type":"application/octet-stream"},{"relation":"main_file","access_level":"open_access","content_type":"application/octet-stream","success":1,"file_id":"12956","checksum":"00f386d80677590e29f6235d49cba58d","creator":"nbarton","file_size":474003467,"date_updated":"2023-05-13T09:46:06Z","file_name":"selected reps N=30 selected k=1,2 300 reps III","date_created":"2023-05-13T09:46:06Z"},{"date_updated":"2023-05-13T09:46:08Z","file_size":121209,"creator":"nbarton","date_created":"2023-05-13T09:46:08Z","file_name":"Algorithm for caclulating identities.nb","content_type":"application/octet-stream","access_level":"open_access","relation":"main_file","checksum":"658cef3eaea6136a4d24da4f074191d7","file_id":"12957","success":1},{"date_created":"2023-05-13T09:46:08Z","file_name":"Infinitesimal with dominance.nb","creator":"nbarton","date_updated":"2023-05-13T09:46:08Z","file_size":1803898,"checksum":"db9b6dddd7a596d974e25f5e78f5c45c","file_id":"12958","success":1,"access_level":"open_access","relation":"main_file","content_type":"application/octet-stream"},{"creator":"nbarton","date_updated":"2023-05-16T04:09:08Z","file_size":990,"date_created":"2023-05-16T04:09:08Z","file_name":"ReadMe.txt","access_level":"open_access","relation":"main_file","content_type":"text/plain","checksum":"91f80a9fb58cae8eef2d8bf59fe30189","file_id":"12967","success":1}],"type":"research_data","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"project":[{"name":"Understanding the evolution of continuous genomes","grant_number":"101055327","_id":"bd6958e0-d553-11ed-ba76-86eba6a76c00"}],"status":"public","keyword":["Quantitative genetics","infinitesimal model"],"_id":"12949","author":[{"full_name":"Barton, Nicholas H","orcid":"0000-0002-8548-5240","last_name":"Barton","first_name":"Nicholas H","id":"4880FE40-F248-11E8-B48F-1D18A9856A87"}],"article_processing_charge":"No","file_date_updated":"2023-05-16T04:09:08Z","title":"The infinitesimal model with dominance","department":[{"_id":"NiBa"}],"citation":{"mla":"Barton, Nicholas H. The Infinitesimal Model with Dominance. Institute of Science and Technology Austria, 2023, doi:10.15479/AT:ISTA:12949.","ieee":"N. H. Barton, “The infinitesimal model with dominance.” Institute of Science and Technology Austria, 2023.","short":"N.H. Barton, (2023).","apa":"Barton, N. H. (2023). The infinitesimal model with dominance. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:12949","ama":"Barton NH. The infinitesimal model with dominance. 2023. doi:10.15479/AT:ISTA:12949","chicago":"Barton, Nicholas H. “The Infinitesimal Model with Dominance.” Institute of Science and Technology Austria, 2023. https://doi.org/10.15479/AT:ISTA:12949.","ista":"Barton NH. 2023. The infinitesimal model with dominance, Institute of Science and Technology Austria, 10.15479/AT:ISTA:12949."},"date_updated":"2023-10-30T13:04:11Z","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["576"]}]