---
_id: '7650'
abstract:
- lang: eng
text: We consider a dilute, homogeneous Bose gas at positive temperature. The system
is investigated in the Gross–Pitaevskii limit, where the scattering length a is
so small that the interaction energy is of the same order of magnitude as the
spectral gap of the Laplacian, and for temperatures that are comparable to the
critical temperature of the ideal gas. We show that the difference between the
specific free energy of the interacting system and the one of the ideal gas is
to leading order given by 4πa(2ϱ2−ϱ20). Here ϱ denotes the density of the system
and ϱ0 is the expected condensate density of the ideal gas. Additionally, we show
that the one-particle density matrix of any approximate minimizer of the Gibbs
free energy functional is to leading order given by the one of the ideal gas.
This in particular proves Bose–Einstein condensation with critical temperature
given by the one of the ideal gas to leading order. One key ingredient of our
proof is a novel use of the Gibbs variational principle that goes hand in hand
with the c-number substitution.
acknowledgement: Open access funding provided by Institute of Science and Technology
(IST Austria). It is a pleasure to thank Jakob Yngvason for helpful discussions.
Financial support by the European Research Council (ERC) under the European Union’sHorizon
2020 research and innovation programme (Grant Agreement No. 694227) is gratefully
acknowledged. A. D. acknowledges funding from the European Union’s Horizon 2020
research and innovation programme under the Marie Sklodowska-Curie Grant Agreement
No. 836146.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Andreas
full_name: Deuchert, Andreas
id: 4DA65CD0-F248-11E8-B48F-1D18A9856A87
last_name: Deuchert
orcid: 0000-0003-3146-6746
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Deuchert A, Seiringer R. Gross-Pitaevskii limit of a homogeneous Bose gas at
positive temperature. Archive for Rational Mechanics and Analysis. 2020;236(6):1217-1271.
doi:10.1007/s00205-020-01489-4
apa: Deuchert, A., & Seiringer, R. (2020). Gross-Pitaevskii limit of a homogeneous
Bose gas at positive temperature. Archive for Rational Mechanics and Analysis.
Springer Nature. https://doi.org/10.1007/s00205-020-01489-4
chicago: Deuchert, Andreas, and Robert Seiringer. “Gross-Pitaevskii Limit of a Homogeneous
Bose Gas at Positive Temperature.” Archive for Rational Mechanics and Analysis.
Springer Nature, 2020. https://doi.org/10.1007/s00205-020-01489-4.
ieee: A. Deuchert and R. Seiringer, “Gross-Pitaevskii limit of a homogeneous Bose
gas at positive temperature,” Archive for Rational Mechanics and Analysis,
vol. 236, no. 6. Springer Nature, pp. 1217–1271, 2020.
ista: Deuchert A, Seiringer R. 2020. Gross-Pitaevskii limit of a homogeneous Bose
gas at positive temperature. Archive for Rational Mechanics and Analysis. 236(6),
1217–1271.
mla: Deuchert, Andreas, and Robert Seiringer. “Gross-Pitaevskii Limit of a Homogeneous
Bose Gas at Positive Temperature.” Archive for Rational Mechanics and Analysis,
vol. 236, no. 6, Springer Nature, 2020, pp. 1217–71, doi:10.1007/s00205-020-01489-4.
short: A. Deuchert, R. Seiringer, Archive for Rational Mechanics and Analysis 236
(2020) 1217–1271.
date_created: 2020-04-08T15:18:03Z
date_published: 2020-03-09T00:00:00Z
date_updated: 2023-09-05T14:18:49Z
day: '09'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s00205-020-01489-4
ec_funded: 1
external_id:
arxiv:
- '1901.11363'
isi:
- '000519415000001'
file:
- access_level: open_access
checksum: b645fb64bfe95bbc05b3eea374109a9c
content_type: application/pdf
creator: dernst
date_created: 2020-11-20T13:17:42Z
date_updated: 2020-11-20T13:17:42Z
file_id: '8785'
file_name: 2020_ArchRatMechanicsAnalysis_Deuchert.pdf
file_size: 704633
relation: main_file
success: 1
file_date_updated: 2020-11-20T13:17:42Z
has_accepted_license: '1'
intvolume: ' 236'
isi: 1
issue: '6'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 1217-1271
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '694227'
name: Analysis of quantum many-body systems
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
publication: Archive for Rational Mechanics and Analysis
publication_identifier:
eissn:
- 1432-0673
issn:
- 0003-9527
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Gross-Pitaevskii limit of a homogeneous Bose gas at positive temperature
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 236
year: '2020'
...
---
_id: '8130'
abstract:
- lang: eng
text: We study the dynamics of a system of N interacting bosons in a disc-shaped
trap, which is realised by an external potential that confines the bosons in one
spatial dimension to an interval of length of order ε. The interaction is non-negative
and scaled in such a way that its scattering length is of order ε/N, while its
range is proportional to (ε/N)β with scaling parameter β∈(0,1]. We consider the
simultaneous limit (N,ε)→(∞,0) and assume that the system initially exhibits Bose–Einstein
condensation. We prove that condensation is preserved by the N-body dynamics,
where the time-evolved condensate wave function is the solution of a two-dimensional
non-linear equation. The strength of the non-linearity depends on the scaling
parameter β. For β∈(0,1), we obtain a cubic defocusing non-linear Schrödinger
equation, while the choice β=1 yields a Gross–Pitaevskii equation featuring the
scattering length of the interaction. In both cases, the coupling parameter depends
on the confining potential.
acknowledgement: Open access funding provided by Institute of Science and Technology
(IST Austria). I thank Stefan Teufel for helpful remarks and for his involvement
in the closely related joint project [10]. Helpful discussions with Serena Cenatiempo
and Nikolai Leopold are gratefully acknowledged. This work was supported by the
German Research Foundation within the Research Training Group 1838 “Spectral Theory
and Dynamics of Quantum Systems” and has received funding from the European Union’s
Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie
Grant Agreement No. 754411.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Lea
full_name: Bossmann, Lea
id: A2E3BCBE-5FCC-11E9-AA4B-76F3E5697425
last_name: Bossmann
orcid: 0000-0002-6854-1343
citation:
ama: Bossmann L. Derivation of the 2d Gross–Pitaevskii equation for strongly confined
3d Bosons. Archive for Rational Mechanics and Analysis. 2020;238(11):541-606.
doi:10.1007/s00205-020-01548-w
apa: Bossmann, L. (2020). Derivation of the 2d Gross–Pitaevskii equation for strongly
confined 3d Bosons. Archive for Rational Mechanics and Analysis. Springer
Nature. https://doi.org/10.1007/s00205-020-01548-w
chicago: Bossmann, Lea. “Derivation of the 2d Gross–Pitaevskii Equation for Strongly
Confined 3d Bosons.” Archive for Rational Mechanics and Analysis. Springer
Nature, 2020. https://doi.org/10.1007/s00205-020-01548-w.
ieee: L. Bossmann, “Derivation of the 2d Gross–Pitaevskii equation for strongly
confined 3d Bosons,” Archive for Rational Mechanics and Analysis, vol.
238, no. 11. Springer Nature, pp. 541–606, 2020.
ista: Bossmann L. 2020. Derivation of the 2d Gross–Pitaevskii equation for strongly
confined 3d Bosons. Archive for Rational Mechanics and Analysis. 238(11), 541–606.
mla: Bossmann, Lea. “Derivation of the 2d Gross–Pitaevskii Equation for Strongly
Confined 3d Bosons.” Archive for Rational Mechanics and Analysis, vol.
238, no. 11, Springer Nature, 2020, pp. 541–606, doi:10.1007/s00205-020-01548-w.
short: L. Bossmann, Archive for Rational Mechanics and Analysis 238 (2020) 541–606.
date_created: 2020-07-18T15:06:35Z
date_published: 2020-11-01T00:00:00Z
date_updated: 2023-09-05T14:19:06Z
day: '01'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s00205-020-01548-w
ec_funded: 1
external_id:
arxiv:
- '1907.04547'
isi:
- '000550164400001'
file:
- access_level: open_access
checksum: cc67a79a67bef441625fcb1cd031db3d
content_type: application/pdf
creator: dernst
date_created: 2020-12-02T08:50:38Z
date_updated: 2020-12-02T08:50:38Z
file_id: '8826'
file_name: 2020_ArchiveRatMech_Bossmann.pdf
file_size: 942343
relation: main_file
success: 1
file_date_updated: 2020-12-02T08:50:38Z
has_accepted_license: '1'
intvolume: ' 238'
isi: 1
issue: '11'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 541-606
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
publication: Archive for Rational Mechanics and Analysis
publication_identifier:
eissn:
- 1432-0673
issn:
- 0003-9527
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Derivation of the 2d Gross–Pitaevskii equation for strongly confined 3d Bosons
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 238
year: '2020'
...
---
_id: '7235'
abstract:
- lang: eng
text: We consider the Fröhlich model of a polaron, and show that its effective mass
diverges in thestrong coupling limit.
acknowledgement: Open access funding provided by Institute of Science and Technology
(IST Austria). Financial support through the European Research Council (ERC) under
the European Union’s Horizon 2020 research and innovation programme (Grant Agreement
No. 694227; R.S.) is gratefully acknowledged.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Elliott H.
full_name: Lieb, Elliott H.
last_name: Lieb
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Lieb EH, Seiringer R. Divergence of the effective mass of a polaron in the
strong coupling limit. Journal of Statistical Physics. 2020;180:23-33.
doi:10.1007/s10955-019-02322-3
apa: Lieb, E. H., & Seiringer, R. (2020). Divergence of the effective mass of
a polaron in the strong coupling limit. Journal of Statistical Physics.
Springer Nature. https://doi.org/10.1007/s10955-019-02322-3
chicago: Lieb, Elliott H., and Robert Seiringer. “Divergence of the Effective Mass
of a Polaron in the Strong Coupling Limit.” Journal of Statistical Physics.
Springer Nature, 2020. https://doi.org/10.1007/s10955-019-02322-3.
ieee: E. H. Lieb and R. Seiringer, “Divergence of the effective mass of a polaron
in the strong coupling limit,” Journal of Statistical Physics, vol. 180.
Springer Nature, pp. 23–33, 2020.
ista: Lieb EH, Seiringer R. 2020. Divergence of the effective mass of a polaron
in the strong coupling limit. Journal of Statistical Physics. 180, 23–33.
mla: Lieb, Elliott H., and Robert Seiringer. “Divergence of the Effective Mass of
a Polaron in the Strong Coupling Limit.” Journal of Statistical Physics,
vol. 180, Springer Nature, 2020, pp. 23–33, doi:10.1007/s10955-019-02322-3.
short: E.H. Lieb, R. Seiringer, Journal of Statistical Physics 180 (2020) 23–33.
date_created: 2020-01-07T09:42:03Z
date_published: 2020-09-01T00:00:00Z
date_updated: 2023-09-05T14:57:29Z
day: '01'
ddc:
- '510'
- '530'
department:
- _id: RoSe
doi: 10.1007/s10955-019-02322-3
ec_funded: 1
external_id:
isi:
- '000556199700003'
file:
- access_level: open_access
checksum: 1e67bee6728592f7bdcea2ad2d9366dc
content_type: application/pdf
creator: dernst
date_created: 2020-11-19T11:13:55Z
date_updated: 2020-11-19T11:13:55Z
file_id: '8774'
file_name: 2020_JourStatPhysics_Lieb.pdf
file_size: 279749
relation: main_file
success: 1
file_date_updated: 2020-11-19T11:13:55Z
has_accepted_license: '1'
intvolume: ' 180'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 23-33
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '694227'
name: Analysis of quantum many-body systems
publication: Journal of Statistical Physics
publication_identifier:
eissn:
- 1572-9613
issn:
- 0022-4715
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Divergence of the effective mass of a polaron in the strong coupling limit
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 180
year: '2020'
...
---
_id: '7966'
abstract:
- lang: eng
text: "For 1≤m≤n, we consider a natural m-out-of-n multi-instance scenario for a
public-key encryption (PKE) scheme. An adversary, given n independent instances
of PKE, wins if he breaks at least m out of the n instances. In this work, we
are interested in the scaling factor of PKE schemes, SF, which measures how well
the difficulty of breaking m out of the n instances scales in m. That is, a scaling
factor SF=ℓ indicates that breaking m out of n instances is at least ℓ times more
difficult than breaking one single instance. A PKE scheme with small scaling factor
hence provides an ideal target for mass surveillance. In fact, the Logjam attack
(CCS 2015) implicitly exploited, among other things, an almost constant scaling
factor of ElGamal over finite fields (with shared group parameters).\r\n\r\nFor
Hashed ElGamal over elliptic curves, we use the generic group model to argue that
the scaling factor depends on the scheme's granularity. In low granularity, meaning
each public key contains its independent group parameter, the scheme has optimal
scaling factor SF=m; In medium and high granularity, meaning all public keys share
the same group parameter, the scheme still has a reasonable scaling factor SF=√m.
Our findings underline that instantiating ElGamal over elliptic curves should
be preferred to finite fields in a multi-instance scenario.\r\n\r\nAs our main
technical contribution, we derive new generic-group lower bounds of Ω(√(mp)) on
the difficulty of solving both the m-out-of-n Gap Discrete Logarithm and the m-out-of-n
Gap Computational Diffie-Hellman problem over groups of prime order p, extending
a recent result by Yun (EUROCRYPT 2015). We establish the lower bound by studying
the hardness of a related computational problem which we call the search-by-hypersurface
problem."
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Benedikt
full_name: Auerbach, Benedikt
id: D33D2B18-E445-11E9-ABB7-15F4E5697425
last_name: Auerbach
orcid: 0000-0002-7553-6606
- first_name: Federico
full_name: Giacon, Federico
last_name: Giacon
- first_name: Eike
full_name: Kiltz, Eike
last_name: Kiltz
citation:
ama: 'Auerbach B, Giacon F, Kiltz E. Everybody’s a target: Scalability in public-key
encryption. In: Advances in Cryptology – EUROCRYPT 2020. Vol 12107. Springer
Nature; 2020:475-506. doi:10.1007/978-3-030-45727-3_16'
apa: 'Auerbach, B., Giacon, F., & Kiltz, E. (2020). Everybody’s a target: Scalability
in public-key encryption. In Advances in Cryptology – EUROCRYPT 2020 (Vol.
12107, pp. 475–506). Springer Nature. https://doi.org/10.1007/978-3-030-45727-3_16'
chicago: 'Auerbach, Benedikt, Federico Giacon, and Eike Kiltz. “Everybody’s a Target:
Scalability in Public-Key Encryption.” In Advances in Cryptology – EUROCRYPT
2020, 12107:475–506. Springer Nature, 2020. https://doi.org/10.1007/978-3-030-45727-3_16.'
ieee: 'B. Auerbach, F. Giacon, and E. Kiltz, “Everybody’s a target: Scalability
in public-key encryption,” in Advances in Cryptology – EUROCRYPT 2020,
2020, vol. 12107, pp. 475–506.'
ista: 'Auerbach B, Giacon F, Kiltz E. 2020. Everybody’s a target: Scalability in
public-key encryption. Advances in Cryptology – EUROCRYPT 2020. EUROCRYPT: Theory
and Applications of Cryptographic Techniques, LNCS, vol. 12107, 475–506.'
mla: 'Auerbach, Benedikt, et al. “Everybody’s a Target: Scalability in Public-Key
Encryption.” Advances in Cryptology – EUROCRYPT 2020, vol. 12107, Springer
Nature, 2020, pp. 475–506, doi:10.1007/978-3-030-45727-3_16.'
short: B. Auerbach, F. Giacon, E. Kiltz, in:, Advances in Cryptology – EUROCRYPT
2020, Springer Nature, 2020, pp. 475–506.
conference:
end_date: 2020-05-15
name: 'EUROCRYPT: Theory and Applications of Cryptographic Techniques'
start_date: 2020-05-11
date_created: 2020-06-15T07:13:37Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2023-09-05T15:06:40Z
day: '01'
department:
- _id: KrPi
doi: 10.1007/978-3-030-45727-3_16
ec_funded: 1
external_id:
isi:
- '000828688000016'
intvolume: ' 12107'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://eprint.iacr.org/2019/364
month: '05'
oa: 1
oa_version: Submitted Version
page: 475-506
project:
- _id: 258AA5B2-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '682815'
name: Teaching Old Crypto New Tricks
publication: Advances in Cryptology – EUROCRYPT 2020
publication_identifier:
eissn:
- 1611-3349
isbn:
- '9783030457266'
- '9783030457273'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: 'Everybody’s a target: Scalability in public-key encryption'
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 12107
year: '2020'
...
---
_id: '8623'
abstract:
- lang: eng
text: We introduce the monitoring of trace properties under assumptions. An assumption
limits the space of possible traces that the monitor may encounter. An assumption
may result from knowledge about the system that is being monitored, about the
environment, or about another, connected monitor. We define monitorability under
assumptions and study its theoretical properties. In particular, we show that
for every assumption A, the boolean combinations of properties that are safe or
co-safe relative to A are monitorable under A. We give several examples and constructions
on how an assumption can make a non-monitorable property monitorable, and how
an assumption can make a monitorable property monitorable with fewer resources,
such as integer registers.
acknowledgement: This research was supported in part by the Austrian Science Fund
(FWF) under grant Z211-N23 (Wittgenstein Award).
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000-0002-2985-7724
- first_name: Naci E
full_name: Sarac, Naci E
id: 8C6B42F8-C8E6-11E9-A03A-F2DCE5697425
last_name: Sarac
citation:
ama: 'Henzinger TA, Sarac NE. Monitorability under assumptions. In: Runtime Verification.
Vol 12399. Springer Nature; 2020:3-18. doi:10.1007/978-3-030-60508-7_1'
apa: 'Henzinger, T. A., & Sarac, N. E. (2020). Monitorability under assumptions.
In Runtime Verification (Vol. 12399, pp. 3–18). Los Angeles, CA, United
States: Springer Nature. https://doi.org/10.1007/978-3-030-60508-7_1'
chicago: Henzinger, Thomas A, and Naci E Sarac. “Monitorability under Assumptions.”
In Runtime Verification, 12399:3–18. Springer Nature, 2020. https://doi.org/10.1007/978-3-030-60508-7_1.
ieee: T. A. Henzinger and N. E. Sarac, “Monitorability under assumptions,” in Runtime
Verification, Los Angeles, CA, United States, 2020, vol. 12399, pp. 3–18.
ista: 'Henzinger TA, Sarac NE. 2020. Monitorability under assumptions. Runtime Verification.
RV: Runtime Verification, LNCS, vol. 12399, 3–18.'
mla: Henzinger, Thomas A., and Naci E. Sarac. “Monitorability under Assumptions.”
Runtime Verification, vol. 12399, Springer Nature, 2020, pp. 3–18, doi:10.1007/978-3-030-60508-7_1.
short: T.A. Henzinger, N.E. Sarac, in:, Runtime Verification, Springer Nature, 2020,
pp. 3–18.
conference:
end_date: 2020-10-09
location: Los Angeles, CA, United States
name: 'RV: Runtime Verification'
start_date: 2020-10-06
date_created: 2020-10-07T15:05:37Z
date_published: 2020-10-02T00:00:00Z
date_updated: 2023-09-05T15:08:26Z
day: '02'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/978-3-030-60508-7_1
external_id:
isi:
- '000728160600001'
file:
- access_level: open_access
checksum: 00661f9b7034f52e18bf24fa552b8194
content_type: application/pdf
creator: esarac
date_created: 2020-10-15T14:28:06Z
date_updated: 2020-10-15T14:28:06Z
file_id: '8665'
file_name: monitorability.pdf
file_size: 478148
relation: main_file
success: 1
file_date_updated: 2020-10-15T14:28:06Z
has_accepted_license: '1'
intvolume: ' 12399'
isi: 1
language:
- iso: eng
month: '10'
oa: 1
oa_version: Submitted Version
page: 3-18
project:
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z211
name: The Wittgenstein Prize
publication: Runtime Verification
publication_identifier:
eissn:
- 1611-3349
isbn:
- '9783030605070'
- '9783030605087'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Monitorability under assumptions
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 12399
year: '2020'
...
---
_id: '10865'
abstract:
- lang: eng
text: "We introduce the notion of Witness Maps as a cryptographic notion of a proof
system. A Unique Witness Map (UWM) deterministically maps all witnesses for an
\ NP statement to a single representative witness, resulting in a computationally
sound, deterministic-prover, non-interactive witness independent proof system.
A relaxation of UWM, called Compact Witness Map (CWM), maps all the witnesses
to a small number of witnesses, resulting in a “lossy” deterministic-prover, non-interactive
proof-system. We also define a Dual Mode Witness Map (DMWM) which adds an “extractable”
mode to a CWM.\r\nOur main construction is a DMWM for all NP relations, assuming
sub-exponentially secure indistinguishability obfuscation ( iO ), along with
standard cryptographic assumptions. The DMWM construction relies on a CWM and
a new primitive called Cumulative All-Lossy-But-One Trapdoor Functions (C-ALBO-TDF),
both of which are in turn instantiated based on iO and other primitives. Our
instantiation of a CWM is in fact a UWM; in turn, we show that a UWM implies Witness
Encryption. Along the way to constructing UWM and C-ALBO-TDF, we also construct,
from standard assumptions, Puncturable Digital Signatures and a new primitive
called Cumulative Lossy Trapdoor Functions (C-LTDF). The former improves up on
a construction of Bellare et al. (Eurocrypt 2016), who relied on sub-exponentially
secure iO and sub-exponentially secure OWF.\r\nAs an application of our constructions,
we show how to use a DMWM to construct the first leakage and tamper-resilient
signatures with a deterministic signer, thereby solving a decade old open problem
posed by Katz and Vaikunthanathan (Asiacrypt 2009), by Boyle, Segev and Wichs
(Eurocrypt 2011), as well as by Faonio and Venturi (Asiacrypt 2016). Our construction
achieves the optimal leakage rate of 1−o(1) ."
acknowledgement: We would like to thank the anonymous reviewers of PKC 2019 for their
useful comments and suggestions. We thank Omer Paneth for pointing out to us the
connection between Unique Witness Maps (UWM) and Witness encryption (WE). The first
author would like to acknowledge Pandu Rangan for his involvement during the initial
discussion phase of the project.
article_processing_charge: No
author:
- first_name: Suvradip
full_name: Chakraborty, Suvradip
id: B9CD0494-D033-11E9-B219-A439E6697425
last_name: Chakraborty
- first_name: Manoj
full_name: Prabhakaran, Manoj
last_name: Prabhakaran
- first_name: Daniel
full_name: Wichs, Daniel
last_name: Wichs
citation:
ama: 'Chakraborty S, Prabhakaran M, Wichs D. Witness maps and applications. In:
Kiayias A, ed. Public-Key Cryptography. Vol 12110. LNCS. Cham: Springer
Nature; 2020:220-246. doi:10.1007/978-3-030-45374-9_8'
apa: 'Chakraborty, S., Prabhakaran, M., & Wichs, D. (2020). Witness maps and
applications. In A. Kiayias (Ed.), Public-Key Cryptography (Vol. 12110,
pp. 220–246). Cham: Springer Nature. https://doi.org/10.1007/978-3-030-45374-9_8'
chicago: 'Chakraborty, Suvradip, Manoj Prabhakaran, and Daniel Wichs. “Witness Maps
and Applications.” In Public-Key Cryptography, edited by A Kiayias, 12110:220–46.
LNCS. Cham: Springer Nature, 2020. https://doi.org/10.1007/978-3-030-45374-9_8.'
ieee: 'S. Chakraborty, M. Prabhakaran, and D. Wichs, “Witness maps and applications,”
in Public-Key Cryptography, vol. 12110, A. Kiayias, Ed. Cham: Springer
Nature, 2020, pp. 220–246.'
ista: 'Chakraborty S, Prabhakaran M, Wichs D. 2020.Witness maps and applications.
In: Public-Key Cryptography. vol. 12110, 220–246.'
mla: Chakraborty, Suvradip, et al. “Witness Maps and Applications.” Public-Key
Cryptography, edited by A Kiayias, vol. 12110, Springer Nature, 2020, pp.
220–46, doi:10.1007/978-3-030-45374-9_8.
short: S. Chakraborty, M. Prabhakaran, D. Wichs, in:, A. Kiayias (Ed.), Public-Key
Cryptography, Springer Nature, Cham, 2020, pp. 220–246.
date_created: 2022-03-18T11:35:51Z
date_published: 2020-04-29T00:00:00Z
date_updated: 2023-09-05T15:10:02Z
day: '29'
doi: 10.1007/978-3-030-45374-9_8
editor:
- first_name: A
full_name: Kiayias, A
last_name: Kiayias
intvolume: ' 12110'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://eprint.iacr.org/2020/090
month: '04'
oa: 1
oa_version: Preprint
page: 220-246
place: Cham
publication: Public-Key Cryptography
publication_identifier:
eissn:
- 1611-3349
isbn:
- '9783030453732'
- '9783030453749'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
series_title: LNCS
status: public
title: Witness maps and applications
type: book_chapter
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 12110
year: '2020'
...
---
_id: '7611'
abstract:
- lang: eng
text: We consider a system of N bosons in the limit N→∞, interacting through singular
potentials. For initial data exhibiting Bose–Einstein condensation, the many-body
time evolution is well approximated through a quadratic fluctuation dynamics around
a cubic nonlinear Schrödinger equation of the condensate wave function. We show
that these fluctuations satisfy a (multi-variate) central limit theorem.
acknowledgement: "Simone Rademacher acknowledges partial support from the NCCR SwissMAP.
This project has received\r\nfunding from the European Union’s Horizon 2020 research
and innovation program under the Marie\r\nSkłodowska-Curie Grant Agreement No. 754411.\r\nOpen
access funding provided by Institute of Science and Technology (IST Austria).\r\nS.R.
would like to thank Benjamin Schlein for many fruitful discussions."
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Simone Anna Elvira
full_name: Rademacher, Simone Anna Elvira
id: 856966FE-A408-11E9-977E-802DE6697425
last_name: Rademacher
orcid: 0000-0001-5059-4466
citation:
ama: Rademacher SAE. Central limit theorem for Bose gases interacting through singular
potentials. Letters in Mathematical Physics. 2020;110:2143-2174. doi:10.1007/s11005-020-01286-w
apa: Rademacher, S. A. E. (2020). Central limit theorem for Bose gases interacting
through singular potentials. Letters in Mathematical Physics. Springer
Nature. https://doi.org/10.1007/s11005-020-01286-w
chicago: Rademacher, Simone Anna Elvira. “Central Limit Theorem for Bose Gases Interacting
through Singular Potentials.” Letters in Mathematical Physics. Springer
Nature, 2020. https://doi.org/10.1007/s11005-020-01286-w.
ieee: S. A. E. Rademacher, “Central limit theorem for Bose gases interacting through
singular potentials,” Letters in Mathematical Physics, vol. 110. Springer
Nature, pp. 2143–2174, 2020.
ista: Rademacher SAE. 2020. Central limit theorem for Bose gases interacting through
singular potentials. Letters in Mathematical Physics. 110, 2143–2174.
mla: Rademacher, Simone Anna Elvira. “Central Limit Theorem for Bose Gases Interacting
through Singular Potentials.” Letters in Mathematical Physics, vol. 110,
Springer Nature, 2020, pp. 2143–74, doi:10.1007/s11005-020-01286-w.
short: S.A.E. Rademacher, Letters in Mathematical Physics 110 (2020) 2143–2174.
date_created: 2020-03-23T11:11:47Z
date_published: 2020-03-12T00:00:00Z
date_updated: 2023-09-05T15:14:50Z
day: '12'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s11005-020-01286-w
ec_funded: 1
external_id:
isi:
- '000551556000006'
file:
- access_level: open_access
checksum: 3bdd41f10ad947b67a45b98f507a7d4a
content_type: application/pdf
creator: dernst
date_created: 2020-11-20T12:04:26Z
date_updated: 2020-11-20T12:04:26Z
file_id: '8784'
file_name: 2020_LettersMathPhysics_Rademacher.pdf
file_size: 478683
relation: main_file
success: 1
file_date_updated: 2020-11-20T12:04:26Z
has_accepted_license: '1'
intvolume: ' 110'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 2143-2174
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
publication: Letters in Mathematical Physics
publication_identifier:
eissn:
- 1573-0530
issn:
- 0377-9017
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Central limit theorem for Bose gases interacting through singular potentials
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 110
year: '2020'
...
---
_id: '7236'
abstract:
- lang: eng
text: The biotic interactions hypothesis posits that biotic interactions are more
important drivers of adaptation closer to the equator, evidenced by “stronger”
contemporary interactions (e.g. greater interaction rates) and/or patterns of
trait evolution consistent with a history of stronger interactions. Support for
the hypothesis is mixed, but few studies span tropical and temperate regions while
experimentally controlling for evolutionary history. Here, we integrate field
observations and common garden experiments to quantify the relative importance
of pollination and herbivory in a pair of tropical‐temperate congeneric perennial
herbs. Phytolacca rivinoides and P. americana are pioneer species native to the
Neotropics and the eastern USA, respectively. We compared plant‐pollinator and
plant‐herbivore interactions between three tropical populations of P. rivinoides
from Costa Rica and three temperate populations of P. americana from its northern
range edge in Michigan and Ohio. For some metrics of interaction importance, we
also included three subtropical populations of P. americana from its southern
range edge in Florida. This approach confounds species and region but allows us,
uniquely, to measure complementary proxies of interaction importance across a
tropical‐temperate range in one system. To test the prediction that lower‐latitude
plants are more reliant on insect pollinators, we quantified floral display and
reward, insect visitation rates, and self‐pollination ability (autogamy). To test
the prediction that lower‐latitude plants experience more herbivore pressure,
we quantified herbivory rates, herbivore abundance, and leaf palatability. We
found evidence supporting the biotic interactions hypothesis for most comparisons
between P. rivinoides and north‐temperate P. americana (floral display, insect
visitation, autogamy, herbivory, herbivore abundance, and young‐leaf palatability).
Results for subtropical P. americana populations, however, were typically not
intermediate between P. rivinoides and north‐temperate P. americana, as would
be predicted by a linear latitudinal gradient in interaction importance. Subtropical
young‐leaf palatability was intermediate, but subtropical mature leaves were the
least palatable, and pollination‐related traits did not differ between temperate
and subtropical regions. These nonlinear patterns of interaction importance suggest
future work to relate interaction importance to climatic or biotic thresholds.
In sum, we found that the biotic interactions hypothesis was more consistently
supported at the larger spatial scale of our study.
article_number: e01397
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Carina
full_name: Baskett, Carina
id: 3B4A7CE2-F248-11E8-B48F-1D18A9856A87
last_name: Baskett
orcid: 0000-0002-7354-8574
- first_name: Lucy
full_name: Schroeder, Lucy
last_name: Schroeder
- first_name: Marjorie G.
full_name: Weber, Marjorie G.
last_name: Weber
- first_name: Douglas W.
full_name: Schemske, Douglas W.
last_name: Schemske
citation:
ama: Baskett C, Schroeder L, Weber MG, Schemske DW. Multiple metrics of latitudinal
patterns in insect pollination and herbivory for a tropical‐temperate congener
pair. Ecological Monographs. 2020;90(1). doi:10.1002/ecm.1397
apa: Baskett, C., Schroeder, L., Weber, M. G., & Schemske, D. W. (2020). Multiple
metrics of latitudinal patterns in insect pollination and herbivory for a tropical‐temperate
congener pair. Ecological Monographs. Wiley. https://doi.org/10.1002/ecm.1397
chicago: Baskett, Carina, Lucy Schroeder, Marjorie G. Weber, and Douglas W. Schemske.
“Multiple Metrics of Latitudinal Patterns in Insect Pollination and Herbivory
for a Tropical‐temperate Congener Pair.” Ecological Monographs. Wiley,
2020. https://doi.org/10.1002/ecm.1397.
ieee: C. Baskett, L. Schroeder, M. G. Weber, and D. W. Schemske, “Multiple metrics
of latitudinal patterns in insect pollination and herbivory for a tropical‐temperate
congener pair,” Ecological Monographs, vol. 90, no. 1. Wiley, 2020.
ista: Baskett C, Schroeder L, Weber MG, Schemske DW. 2020. Multiple metrics of latitudinal
patterns in insect pollination and herbivory for a tropical‐temperate congener
pair. Ecological Monographs. 90(1), e01397.
mla: Baskett, Carina, et al. “Multiple Metrics of Latitudinal Patterns in Insect
Pollination and Herbivory for a Tropical‐temperate Congener Pair.” Ecological
Monographs, vol. 90, no. 1, e01397, Wiley, 2020, doi:10.1002/ecm.1397.
short: C. Baskett, L. Schroeder, M.G. Weber, D.W. Schemske, Ecological Monographs
90 (2020).
date_created: 2020-01-07T12:47:07Z
date_published: 2020-02-01T00:00:00Z
date_updated: 2023-09-05T15:43:19Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1002/ecm.1397
ec_funded: 1
external_id:
isi:
- '000508511600001'
file:
- access_level: open_access
checksum: ab8130c6e68101f5a091d05324c36f08
content_type: application/pdf
creator: dernst
date_created: 2020-02-10T08:18:14Z
date_updated: 2020-07-14T12:47:54Z
file_id: '7469'
file_name: 2020_EcologMono_Baskett.pdf
file_size: 537941
relation: main_file
file_date_updated: 2020-07-14T12:47:54Z
has_accepted_license: '1'
intvolume: ' 90'
isi: 1
issue: '1'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc/4.0/
month: '02'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Ecological Monographs
publication_identifier:
eissn:
- 1557-7015
issn:
- 0012-9615
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Multiple metrics of latitudinal patterns in insect pollination and herbivory
for a tropical‐temperate congener pair
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 90
year: '2020'
...
---
_id: '7697'
abstract:
- lang: eng
text: "* Morphogenesis and adaptive tropic growth in plants depend on gradients
of the phytohormone auxin, mediated by the membrane‐based PIN‐FORMED (PIN) auxin
transporters. PINs localize to a particular side of the plasma membrane (PM) or
to the endoplasmic reticulum (ER) to directionally transport auxin and maintain
intercellular and intracellular auxin homeostasis, respectively. However, the
molecular cues that confer their diverse cellular localizations remain largely
unknown.\r\n* In this study, we systematically swapped the domains between ER‐
and PM‐localized PIN proteins, as well as between apical and basal PM‐localized
PINs from Arabidopsis thaliana , to shed light on why PIN family members with
similar topological structures reside at different membrane compartments within
cells.\r\n* Our results show that not only do the N‐ and C‐terminal transmembrane
domains (TMDs) and central hydrophilic loop contribute to their differential subcellular
localizations and cellular polarity, but that the pairwise‐matched N‐ and C‐terminal
TMDs resulting from intramolecular domain–domain coevolution are also crucial
for their divergent patterns of localization.\r\n* These findings illustrate the
complexity of the evolutionary path of PIN proteins in acquiring their plethora
of developmental functions and adaptive growth in plants."
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Yuzhou
full_name: Zhang, Yuzhou
id: 3B6137F2-F248-11E8-B48F-1D18A9856A87
last_name: Zhang
orcid: 0000-0003-2627-6956
- first_name: Corinna
full_name: Hartinger, Corinna
id: AEFB2266-8ABF-11EA-AA39-812C3623CBE4
last_name: Hartinger
orcid: 0000-0003-1618-2737
- first_name: Xiaojuan
full_name: Wang, Xiaojuan
last_name: Wang
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Zhang Y, Hartinger C, Wang X, Friml J. Directional auxin fluxes in plants by
intramolecular domain‐domain co‐evolution of PIN auxin transporters. New Phytologist.
2020;227(5):1406-1416. doi:10.1111/nph.16629
apa: Zhang, Y., Hartinger, C., Wang, X., & Friml, J. (2020). Directional auxin
fluxes in plants by intramolecular domain‐domain co‐evolution of PIN auxin transporters.
New Phytologist. Wiley. https://doi.org/10.1111/nph.16629
chicago: Zhang, Yuzhou, Corinna Hartinger, Xiaojuan Wang, and Jiří Friml. “Directional
Auxin Fluxes in Plants by Intramolecular Domain‐domain Co‐evolution of PIN Auxin
Transporters.” New Phytologist. Wiley, 2020. https://doi.org/10.1111/nph.16629.
ieee: Y. Zhang, C. Hartinger, X. Wang, and J. Friml, “Directional auxin fluxes in
plants by intramolecular domain‐domain co‐evolution of PIN auxin transporters,”
New Phytologist, vol. 227, no. 5. Wiley, pp. 1406–1416, 2020.
ista: Zhang Y, Hartinger C, Wang X, Friml J. 2020. Directional auxin fluxes in plants
by intramolecular domain‐domain co‐evolution of PIN auxin transporters. New Phytologist.
227(5), 1406–1416.
mla: Zhang, Yuzhou, et al. “Directional Auxin Fluxes in Plants by Intramolecular
Domain‐domain Co‐evolution of PIN Auxin Transporters.” New Phytologist,
vol. 227, no. 5, Wiley, 2020, pp. 1406–16, doi:10.1111/nph.16629.
short: Y. Zhang, C. Hartinger, X. Wang, J. Friml, New Phytologist 227 (2020) 1406–1416.
date_created: 2020-04-30T08:43:29Z
date_published: 2020-09-01T00:00:00Z
date_updated: 2023-09-05T15:46:04Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1111/nph.16629
ec_funded: 1
external_id:
isi:
- '000534092400001'
pmid:
- '32350870'
file:
- access_level: open_access
checksum: 8e8150dbbba8cb65b72f81d1f0864b8b
content_type: application/pdf
creator: dernst
date_created: 2020-11-24T12:19:38Z
date_updated: 2020-11-24T12:19:38Z
file_id: '8799'
file_name: 2020_09_NewPhytologist_Zhang.pdf
file_size: 3643395
relation: main_file
success: 1
file_date_updated: 2020-11-24T12:19:38Z
has_accepted_license: '1'
intvolume: ' 227'
isi: 1
issue: '5'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 1406-1416
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '742985'
name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I03630
name: Molecular mechanisms of endocytic cargo recognition in plants
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
publication: New Phytologist
publication_identifier:
eissn:
- 1469-8137
issn:
- 0028-646X
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Directional auxin fluxes in plants by intramolecular domain‐domain co‐evolution
of PIN auxin transporters
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 227
year: '2020'
...
---
_id: '8765'
abstract:
- lang: eng
text: This paper introduces a simple method for simulating highly anisotropic elastoplastic
material behaviors like the dissolution of fibrous phenomena (splintering wood,
shredding bales of hay) and materials composed of large numbers of irregularly‐shaped
bodies (piles of twigs, pencils, or cards). We introduce a simple transformation
of the anisotropic problem into an equivalent isotropic one, and we solve this
new “fictitious” isotropic problem using an existing simulator based on the material
point method. Our approach results in minimal changes to existing simulators,
and it allows us to re‐use popular isotropic plasticity models like the Drucker‐Prager
yield criterion instead of inventing new anisotropic plasticity models for every
phenomenon we wish to simulate.
acknowledged_ssus:
- _id: ScienComp
acknowledgement: "We wish to thank the anonymous reviewers and the members of the
Visual Computing Group at IST Austria for their valuable feedback. This research
was supported by the Scientific Service Units (SSU) of IST Austria through resources
provided by Scientific Computing. We would also like to thank Joseph Teran and Chenfanfu
Jiang for the helpful discussions.\r\nThis project has received funding from the
European Research Council (ERC) under the European Union's Horizon 2020 research
and innovation programme under grant agreement No. 638176."
article_processing_charge: No
article_type: original
author:
- first_name: Camille
full_name: Schreck, Camille
id: 2B14B676-F248-11E8-B48F-1D18A9856A87
last_name: Schreck
- first_name: Christopher J
full_name: Wojtan, Christopher J
id: 3C61F1D2-F248-11E8-B48F-1D18A9856A87
last_name: Wojtan
orcid: 0000-0001-6646-5546
citation:
ama: Schreck C, Wojtan C. A practical method for animating anisotropic elastoplastic
materials. Computer Graphics Forum. 2020;39(2):89-99. doi:10.1111/cgf.13914
apa: Schreck, C., & Wojtan, C. (2020). A practical method for animating anisotropic
elastoplastic materials. Computer Graphics Forum. Wiley. https://doi.org/10.1111/cgf.13914
chicago: Schreck, Camille, and Chris Wojtan. “A Practical Method for Animating Anisotropic
Elastoplastic Materials.” Computer Graphics Forum. Wiley, 2020. https://doi.org/10.1111/cgf.13914.
ieee: C. Schreck and C. Wojtan, “A practical method for animating anisotropic elastoplastic
materials,” Computer Graphics Forum, vol. 39, no. 2. Wiley, pp. 89–99,
2020.
ista: Schreck C, Wojtan C. 2020. A practical method for animating anisotropic elastoplastic
materials. Computer Graphics Forum. 39(2), 89–99.
mla: Schreck, Camille, and Chris Wojtan. “A Practical Method for Animating Anisotropic
Elastoplastic Materials.” Computer Graphics Forum, vol. 39, no. 2, Wiley,
2020, pp. 89–99, doi:10.1111/cgf.13914.
short: C. Schreck, C. Wojtan, Computer Graphics Forum 39 (2020) 89–99.
date_created: 2020-11-17T09:35:10Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2023-09-05T16:00:13Z
day: '01'
ddc:
- '000'
department:
- _id: ChWo
doi: 10.1111/cgf.13914
ec_funded: 1
external_id:
isi:
- '000548709600008'
file:
- access_level: open_access
checksum: 7605f605acd84d0942b48bc7a1c2d72e
content_type: application/pdf
creator: dernst
date_created: 2020-11-23T09:05:13Z
date_updated: 2020-11-23T09:05:13Z
file_id: '8796'
file_name: 2020_poff_revisited.pdf
file_size: 38969122
relation: main_file
success: 1
file_date_updated: 2020-11-23T09:05:13Z
has_accepted_license: '1'
intvolume: ' 39'
isi: 1
issue: '2'
keyword:
- Computer Networks and Communications
language:
- iso: eng
month: '05'
oa: 1
oa_version: Submitted Version
page: 89-99
project:
- _id: 2533E772-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '638176'
name: Efficient Simulation of Natural Phenomena at Extremely Large Scales
publication: Computer Graphics Forum
publication_identifier:
eissn:
- 1467-8659
issn:
- 0167-7055
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: A practical method for animating anisotropic elastoplastic materials
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 39
year: '2020'
...
---
_id: '8057'
abstract:
- lang: eng
text: Water-in-salt electrolytes based on highly concentrated bis(trifluoromethyl)sulfonimide
(TFSI) promise aqueous electrolytes with stabilities approaching 3 V. However,
especially with an electrode approaching the cathodic (reductive) stability, cycling
stability is insufficient. While stability critically relies on a solid electrolyte
interphase (SEI), the mechanism behind the cathodic stability limit remains unclear.
Here, we reveal two distinct reduction potentials for the chemical environments
of ‘free’ and ‘bound’ water and that both contribute to SEI formation. Free-water
is reduced ~1V above bound water in a hydrogen evolution reaction (HER) and responsible
for SEI formation via reactive intermediates of the HER; concurrent LiTFSI precipitation/dissolution
establishes a dynamic interface. The free-water population emerges, therefore,
as the handle to extend the cathodic limit of aqueous electrolytes and the battery
cycling stability.
article_processing_charge: No
article_type: original
author:
- first_name: Roza
full_name: Bouchal, Roza
last_name: Bouchal
- first_name: Zhujie
full_name: Li, Zhujie
last_name: Li
- first_name: Chandra
full_name: Bongu, Chandra
last_name: Bongu
- first_name: Steven
full_name: Le Vot, Steven
last_name: Le Vot
- first_name: Romain
full_name: Berthelot, Romain
last_name: Berthelot
- first_name: Benjamin
full_name: Rotenberg, Benjamin
last_name: Rotenberg
- first_name: Frederic
full_name: Favier, Frederic
last_name: Favier
- first_name: Stefan Alexander
full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
- first_name: Mathieu
full_name: Salanne, Mathieu
last_name: Salanne
- first_name: Olivier
full_name: Fontaine, Olivier
last_name: Fontaine
citation:
ama: Bouchal R, Li Z, Bongu C, et al. Competitive salt precipitation/dissolution
during free‐water reduction in water‐in‐salt electrolyte. Angewandte Chemie.
2020;132(37):16047-16051. doi:10.1002/ange.202005378
apa: Bouchal, R., Li, Z., Bongu, C., Le Vot, S., Berthelot, R., Rotenberg, B., …
Fontaine, O. (2020). Competitive salt precipitation/dissolution during free‐water
reduction in water‐in‐salt electrolyte. Angewandte Chemie. Wiley. https://doi.org/10.1002/ange.202005378
chicago: Bouchal, Roza, Zhujie Li, Chandra Bongu, Steven Le Vot, Romain Berthelot,
Benjamin Rotenberg, Frederic Favier, Stefan Alexander Freunberger, Mathieu Salanne,
and Olivier Fontaine. “Competitive Salt Precipitation/Dissolution during Free‐water
Reduction in Water‐in‐salt Electrolyte.” Angewandte Chemie. Wiley, 2020.
https://doi.org/10.1002/ange.202005378.
ieee: R. Bouchal et al., “Competitive salt precipitation/dissolution during
free‐water reduction in water‐in‐salt electrolyte,” Angewandte Chemie,
vol. 132, no. 37. Wiley, pp. 16047–16051, 2020.
ista: Bouchal R, Li Z, Bongu C, Le Vot S, Berthelot R, Rotenberg B, Favier F, Freunberger
SA, Salanne M, Fontaine O. 2020. Competitive salt precipitation/dissolution during
free‐water reduction in water‐in‐salt electrolyte. Angewandte Chemie. 132(37),
16047–16051.
mla: Bouchal, Roza, et al. “Competitive Salt Precipitation/Dissolution during Free‐water
Reduction in Water‐in‐salt Electrolyte.” Angewandte Chemie, vol. 132, no.
37, Wiley, 2020, pp. 16047–51, doi:10.1002/ange.202005378.
short: R. Bouchal, Z. Li, C. Bongu, S. Le Vot, R. Berthelot, B. Rotenberg, F. Favier,
S.A. Freunberger, M. Salanne, O. Fontaine, Angewandte Chemie 132 (2020) 16047–16051.
date_created: 2020-06-29T16:15:49Z
date_published: 2020-09-07T00:00:00Z
date_updated: 2023-09-05T15:47:50Z
day: '07'
ddc:
- '540'
- '541'
department:
- _id: StFr
doi: 10.1002/ange.202005378
file:
- access_level: open_access
checksum: 7dd0a56f6bd5de08ea75b1ec388c91bc
content_type: application/pdf
creator: dernst
date_created: 2020-09-17T08:59:43Z
date_updated: 2020-09-17T08:59:43Z
file_id: '8401'
file_name: 2020_AngChemieDE_Bouchal.pdf
file_size: 1904552
relation: main_file
success: 1
file_date_updated: 2020-09-17T08:59:43Z
has_accepted_license: '1'
intvolume: ' 132'
issue: '37'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 16047-16051
publication: Angewandte Chemie
publication_identifier:
eissn:
- 1521-3757
issn:
- 0044-8249
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Competitive salt precipitation/dissolution during free‐water reduction in water‐in‐salt
electrolyte
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 132
year: '2020'
...
---
_id: '7343'
abstract:
- lang: eng
text: Coinfections with multiple pathogens can result in complex within‐host dynamics
affecting virulence and transmission. While multiple infections are intensively
studied in solitary hosts, it is so far unresolved how social host interactions
interfere with pathogen competition, and if this depends on coinfection diversity.
We studied how the collective disease defences of ants – their social immunity
– influence pathogen competition in coinfections of same or different fungal pathogen
species. Social immunity reduced virulence for all pathogen combinations, but
interfered with spore production only in different‐species coinfections. Here,
it decreased overall pathogen sporulation success while increasing co‐sporulation
on individual cadavers and maintaining a higher pathogen diversity at the community
level. Mathematical modelling revealed that host sanitary care alone can modulate
competitive outcomes between pathogens, giving advantage to fast‐germinating,
thus less grooming‐sensitive ones. Host social interactions can hence modulate
infection dynamics in coinfected group members, thereby altering pathogen communities
at the host level and population level.
acknowledged_ssus:
- _id: LifeSc
acknowledgement: "We thank Bernhardt Steinwender and Jorgen Eilenberg for the fungal
strains, Xavier Espadaler, Mireia Diaz, Christiane Wanke, Lumi Viljakainen and the
Social Immunity Team at IST Austria, for help with ant collection, and Wanda Gorecka
and Gertraud Stift of the IST Austria Life Science Facility for technical support.
We are thankful to Dieter Ebert for input at all stages of the project, Roger Mundry
for statistical advice, Hinrich Schulenburg, Paul Schmid-Hempel, Yuko\r\nUlrich
and Joachim Kurtz for project discussion, Bor Kavcic for advice on growth curves,
Marcus Roper for advice on modelling work and comments on the manuscript, as well
as Marjon de Vos, Weini Huang and the Social Immunity Team for comments on the manuscript.\r\nThis
study was funded by the German Research Foundation (DFG) within the Priority Programme
1399 Host-parasite Coevolution (CR 118/3 to S.C.) and the People Programme\r\n(Marie
Curie Actions) of the European Union’s Seventh Framework Programme (FP7/2007-2013)
under REA grant agreement no 291734 (ISTFELLOW to B.M.). "
article_processing_charge: Yes (via OA deal)
article_type: letter_note
author:
- first_name: Barbara
full_name: Milutinovic, Barbara
id: 2CDC32B8-F248-11E8-B48F-1D18A9856A87
last_name: Milutinovic
orcid: 0000-0002-8214-4758
- first_name: Miriam
full_name: Stock, Miriam
id: 42462816-F248-11E8-B48F-1D18A9856A87
last_name: Stock
- first_name: Anna V
full_name: Grasse, Anna V
id: 406F989C-F248-11E8-B48F-1D18A9856A87
last_name: Grasse
- first_name: Elisabeth
full_name: Naderlinger, Elisabeth
id: 31757262-F248-11E8-B48F-1D18A9856A87
last_name: Naderlinger
- first_name: Christian
full_name: Hilbe, Christian
id: 2FDF8F3C-F248-11E8-B48F-1D18A9856A87
last_name: Hilbe
orcid: 0000-0001-5116-955X
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
citation:
ama: Milutinovic B, Stock M, Grasse AV, Naderlinger E, Hilbe C, Cremer S. Social
immunity modulates competition between coinfecting pathogens. Ecology Letters.
2020;23(3):565-574. doi:10.1111/ele.13458
apa: Milutinovic, B., Stock, M., Grasse, A. V., Naderlinger, E., Hilbe, C., &
Cremer, S. (2020). Social immunity modulates competition between coinfecting pathogens.
Ecology Letters. Wiley. https://doi.org/10.1111/ele.13458
chicago: Milutinovic, Barbara, Miriam Stock, Anna V Grasse, Elisabeth Naderlinger,
Christian Hilbe, and Sylvia Cremer. “Social Immunity Modulates Competition between
Coinfecting Pathogens.” Ecology Letters. Wiley, 2020. https://doi.org/10.1111/ele.13458.
ieee: B. Milutinovic, M. Stock, A. V. Grasse, E. Naderlinger, C. Hilbe, and S. Cremer,
“Social immunity modulates competition between coinfecting pathogens,” Ecology
Letters, vol. 23, no. 3. Wiley, pp. 565–574, 2020.
ista: Milutinovic B, Stock M, Grasse AV, Naderlinger E, Hilbe C, Cremer S. 2020.
Social immunity modulates competition between coinfecting pathogens. Ecology Letters.
23(3), 565–574.
mla: Milutinovic, Barbara, et al. “Social Immunity Modulates Competition between
Coinfecting Pathogens.” Ecology Letters, vol. 23, no. 3, Wiley, 2020, pp.
565–74, doi:10.1111/ele.13458.
short: B. Milutinovic, M. Stock, A.V. Grasse, E. Naderlinger, C. Hilbe, S. Cremer,
Ecology Letters 23 (2020) 565–574.
date_created: 2020-01-20T13:32:12Z
date_published: 2020-03-01T00:00:00Z
date_updated: 2023-09-05T16:04:49Z
day: '01'
ddc:
- '570'
department:
- _id: SyCr
- _id: KrCh
doi: 10.1111/ele.13458
ec_funded: 1
external_id:
isi:
- '000507515900001'
file:
- access_level: open_access
checksum: 0cd8be386fa219db02845b7c3991ce04
content_type: application/pdf
creator: dernst
date_created: 2020-11-19T11:27:10Z
date_updated: 2020-11-19T11:27:10Z
file_id: '8776'
file_name: 2020_EcologyLetters_Milutinovic.pdf
file_size: 561749
relation: main_file
success: 1
file_date_updated: 2020-11-19T11:27:10Z
has_accepted_license: '1'
intvolume: ' 23'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 565-574
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
- _id: 25DAF0B2-B435-11E9-9278-68D0E5697425
grant_number: CR-118/3-1
name: Host-Parasite Coevolution
publication: Ecology Letters
publication_identifier:
eissn:
- 1461-0248
issn:
- 1461-023X
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
link:
- description: News on IST Homepage
relation: press_release
url: https://ist.ac.at/en/news/social-ants-shapes-disease-outcome/
record:
- id: '13060'
relation: research_data
status: public
scopus_import: '1'
status: public
title: Social immunity modulates competition between coinfecting pathogens
tmp:
image: /images/cc_by_nc.png
legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode
name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0)
short: CC BY-NC (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 23
year: '2020'
...
---
_id: '8099'
abstract:
- lang: eng
text: Sewall Wright developed FST for describing population differentiation and
it has since been extended to many novel applications, including the detection
of homomorphic sex chromosomes. However, there has been confusion regarding the
expected estimate of FST for a fixed difference between the X‐ and Y‐chromosome
when comparing males and females. Here, we attempt to resolve this confusion by
contrasting two common FST estimators and explain why they yield different estimates
when applied to the case of sex chromosomes. We show that this difference is true
for many allele frequencies, but the situation characterized by fixed differences
between the X‐ and Y‐chromosome is among the most extreme. To avoid additional
confusion, we recommend that all authors using FST clearly state which estimator
of FST their work uses.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: William J
full_name: Gammerdinger, William J
id: 3A7E01BC-F248-11E8-B48F-1D18A9856A87
last_name: Gammerdinger
orcid: 0000-0001-9638-1220
- first_name: Melissa A
full_name: Toups, Melissa A
id: 4E099E4E-F248-11E8-B48F-1D18A9856A87
last_name: Toups
orcid: 0000-0002-9752-7380
- first_name: Beatriz
full_name: Vicoso, Beatriz
id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87
last_name: Vicoso
orcid: 0000-0002-4579-8306
citation:
ama: 'Gammerdinger WJ, Toups MA, Vicoso B. Disagreement in FST estimators: A case
study from sex chromosomes. Molecular Ecology Resources. 2020;20(6):1517-1525.
doi:10.1111/1755-0998.13210'
apa: 'Gammerdinger, W. J., Toups, M. A., & Vicoso, B. (2020). Disagreement in
FST estimators: A case study from sex chromosomes. Molecular Ecology Resources.
Wiley. https://doi.org/10.1111/1755-0998.13210'
chicago: 'Gammerdinger, William J, Melissa A Toups, and Beatriz Vicoso. “Disagreement
in FST Estimators: A Case Study from Sex Chromosomes.” Molecular Ecology Resources.
Wiley, 2020. https://doi.org/10.1111/1755-0998.13210.'
ieee: 'W. J. Gammerdinger, M. A. Toups, and B. Vicoso, “Disagreement in FST estimators:
A case study from sex chromosomes,” Molecular Ecology Resources, vol.
20, no. 6. Wiley, pp. 1517–1525, 2020.'
ista: 'Gammerdinger WJ, Toups MA, Vicoso B. 2020. Disagreement in FST estimators:
A case study from sex chromosomes. Molecular Ecology Resources. 20(6), 1517–1525.'
mla: 'Gammerdinger, William J., et al. “Disagreement in FST Estimators: A Case Study
from Sex Chromosomes.” Molecular Ecology Resources, vol. 20, no. 6, Wiley,
2020, pp. 1517–25, doi:10.1111/1755-0998.13210.'
short: W.J. Gammerdinger, M.A. Toups, B. Vicoso, Molecular Ecology Resources 20
(2020) 1517–1525.
date_created: 2020-07-07T08:56:16Z
date_published: 2020-11-01T00:00:00Z
date_updated: 2023-09-05T16:07:08Z
day: '01'
ddc:
- '570'
department:
- _id: BeVi
doi: 10.1111/1755-0998.13210
ec_funded: 1
external_id:
isi:
- '000545451200001'
pmid:
- '32543001'
file:
- access_level: open_access
checksum: 3d87ebb8757dcd504f20c618b72e6575
content_type: application/pdf
creator: dernst
date_created: 2020-11-26T11:46:43Z
date_updated: 2020-11-26T11:46:43Z
file_id: '8814'
file_name: 2020_MolecularEcologyRes_Gammerdinger.pdf
file_size: 820428
relation: main_file
success: 1
file_date_updated: 2020-11-26T11:46:43Z
has_accepted_license: '1'
intvolume: ' 20'
isi: 1
issue: '6'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: 1517-1525
pmid: 1
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: 250ED89C-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P28842-B22
name: Sex chromosome evolution under male- and female- heterogamety
publication: Molecular Ecology Resources
publication_identifier:
eissn:
- 1755-0998
issn:
- 1755-098X
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Disagreement in FST estimators: A case study from sex chromosomes'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 20
year: '2020'
...
---
_id: '7847'
abstract:
- lang: eng
text: 'Water-in-salt electrolytes based on highly concentrated bis(trifluoromethyl)sulfonimide
(TFSI) promise aqueous electrolytes with stabilities nearing 3 V. However, especially
with an electrode approaching the cathodic (reductive) stability, cycling stability
is insufficient. While stability critically relies on a solid electrolyte interphase
(SEI), the mechanism behind the cathodic stability limit remains unclear. Here,
we reveal two distinct reduction potentials for the chemical environments of ''free''
and ''bound'' water and that both contribute to SEI formation. Free-water is reduced
~1V above bound water in a hydrogen evolution reaction (HER) and responsible for
SEI formation via reactive intermediates of the HER; concurrent LiTFSI precipitation/dissolution
establishes a dynamic interface. The free-water population emerges, therefore,
as the handle to extend the cathodic limit of aqueous electrolytes and the battery
cycling stability. '
article_processing_charge: No
article_type: original
author:
- first_name: Roza
full_name: Bouchal, Roza
last_name: Bouchal
- first_name: Zhujie
full_name: Li, Zhujie
last_name: Li
- first_name: Chandra
full_name: Bongu, Chandra
last_name: Bongu
- first_name: Steven
full_name: Le Vot, Steven
last_name: Le Vot
- first_name: Romain
full_name: Berthelot, Romain
last_name: Berthelot
- first_name: Benjamin
full_name: Rotenberg, Benjamin
last_name: Rotenberg
- first_name: Fréderic
full_name: Favier, Fréderic
last_name: Favier
- first_name: Stefan Alexander
full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
- first_name: Mathieu
full_name: Salanne, Mathieu
last_name: Salanne
- first_name: Olivier
full_name: Fontaine, Olivier
last_name: Fontaine
citation:
ama: Bouchal R, Li Z, Bongu C, et al. Competitive salt precipitation/dissolution
during free‐water reduction in water‐in‐salt electrolyte. Angewandte Chemie
International Edition. 2020;59(37):15913-1591. doi:10.1002/anie.202005378
apa: Bouchal, R., Li, Z., Bongu, C., Le Vot, S., Berthelot, R., Rotenberg, B., …
Fontaine, O. (2020). Competitive salt precipitation/dissolution during free‐water
reduction in water‐in‐salt electrolyte. Angewandte Chemie International Edition.
Wiley. https://doi.org/10.1002/anie.202005378
chicago: Bouchal, Roza, Zhujie Li, Chandra Bongu, Steven Le Vot, Romain Berthelot,
Benjamin Rotenberg, Fréderic Favier, Stefan Alexander Freunberger, Mathieu Salanne,
and Olivier Fontaine. “Competitive Salt Precipitation/Dissolution during Free‐water
Reduction in Water‐in‐salt Electrolyte.” Angewandte Chemie International Edition.
Wiley, 2020. https://doi.org/10.1002/anie.202005378.
ieee: R. Bouchal et al., “Competitive salt precipitation/dissolution during
free‐water reduction in water‐in‐salt electrolyte,” Angewandte Chemie International
Edition, vol. 59, no. 37. Wiley, pp. 15913–1591, 2020.
ista: Bouchal R, Li Z, Bongu C, Le Vot S, Berthelot R, Rotenberg B, Favier F, Freunberger
SA, Salanne M, Fontaine O. 2020. Competitive salt precipitation/dissolution during
free‐water reduction in water‐in‐salt electrolyte. Angewandte Chemie International
Edition. 59(37), 15913–1591.
mla: Bouchal, Roza, et al. “Competitive Salt Precipitation/Dissolution during Free‐water
Reduction in Water‐in‐salt Electrolyte.” Angewandte Chemie International Edition,
vol. 59, no. 37, Wiley, 2020, pp. 15913–1591, doi:10.1002/anie.202005378.
short: R. Bouchal, Z. Li, C. Bongu, S. Le Vot, R. Berthelot, B. Rotenberg, F. Favier,
S.A. Freunberger, M. Salanne, O. Fontaine, Angewandte Chemie International Edition
59 (2020) 15913–1591.
date_created: 2020-05-14T21:00:30Z
date_published: 2020-09-07T00:00:00Z
date_updated: 2023-09-05T16:02:53Z
day: '07'
ddc:
- '540'
- '546'
department:
- _id: StFr
doi: 10.1002/anie.202005378
external_id:
isi:
- '000541488700001'
pmid:
- '32390281'
file:
- access_level: open_access
checksum: 7b6c2fc20e9b0ff4353352f7a7004e2d
content_type: application/pdf
creator: dernst
date_created: 2020-09-17T08:57:16Z
date_updated: 2020-09-17T08:57:16Z
file_id: '8400'
file_name: 2020_AngChemieINT_Buchal.pdf
file_size: 1966184
relation: main_file
success: 1
file_date_updated: 2020-09-17T08:57:16Z
has_accepted_license: '1'
intvolume: ' 59'
isi: 1
issue: '37'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 15913-1591
pmid: 1
publication: Angewandte Chemie International Edition
publication_identifier:
eissn:
- 1521-3773
issn:
- 1433-7851
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Competitive salt precipitation/dissolution during free‐water reduction in water‐in‐salt
electrolyte
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 59
year: '2020'
...
---
_id: '7224'
abstract:
- lang: eng
text: 'Habitat loss is one of the key drivers of the ongoing decline of biodiversity.
However, ecologists still argue about how fragmentation of habitat (independent
of habitat loss) affects species richness. The recently proposed habitat amount
hypothesis posits that species richness only depends on the total amount of habitat
in a local landscape. In contrast, empirical studies report contrasting patterns:
some find positive and others negative effects of fragmentation per se on species
richness. To explain this apparent disparity, we devise a stochastic, spatially
explicit model of competitive species communities in heterogeneous habitats. The
model shows that habitat loss and fragmentation have complex effects on species
diversity in competitive communities. When the total amount of habitat is large,
fragmentation per se tends to increase species diversity, but if the total amount
of habitat is small, the situation is reversed: fragmentation per se decreases
species diversity.'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Joel
full_name: Rybicki, Joel
id: 334EFD2E-F248-11E8-B48F-1D18A9856A87
last_name: Rybicki
orcid: 0000-0002-6432-6646
- first_name: Nerea
full_name: Abrego, Nerea
last_name: Abrego
- first_name: Otso
full_name: Ovaskainen, Otso
last_name: Ovaskainen
citation:
ama: Rybicki J, Abrego N, Ovaskainen O. Habitat fragmentation and species diversity
in competitive communities. Ecology Letters. 2020;23(3):506-517. doi:10.1111/ele.13450
apa: Rybicki, J., Abrego, N., & Ovaskainen, O. (2020). Habitat fragmentation
and species diversity in competitive communities. Ecology Letters. Wiley.
https://doi.org/10.1111/ele.13450
chicago: Rybicki, Joel, Nerea Abrego, and Otso Ovaskainen. “Habitat Fragmentation
and Species Diversity in Competitive Communities.” Ecology Letters. Wiley,
2020. https://doi.org/10.1111/ele.13450.
ieee: J. Rybicki, N. Abrego, and O. Ovaskainen, “Habitat fragmentation and species
diversity in competitive communities,” Ecology Letters, vol. 23, no. 3.
Wiley, pp. 506–517, 2020.
ista: Rybicki J, Abrego N, Ovaskainen O. 2020. Habitat fragmentation and species
diversity in competitive communities. Ecology Letters. 23(3), 506–517.
mla: Rybicki, Joel, et al. “Habitat Fragmentation and Species Diversity in Competitive
Communities.” Ecology Letters, vol. 23, no. 3, Wiley, 2020, pp. 506–17,
doi:10.1111/ele.13450.
short: J. Rybicki, N. Abrego, O. Ovaskainen, Ecology Letters 23 (2020) 506–517.
date_created: 2020-01-04T11:04:30Z
date_published: 2020-03-01T00:00:00Z
date_updated: 2023-09-05T16:04:30Z
day: '01'
ddc:
- '000'
department:
- _id: DaAl
doi: 10.1111/ele.13450
ec_funded: 1
external_id:
isi:
- '000503625200001'
file:
- access_level: open_access
checksum: 372f67f2744f4b6049e9778364766c22
content_type: application/pdf
creator: dernst
date_created: 2020-02-14T12:02:50Z
date_updated: 2020-07-14T12:47:54Z
file_id: '7486'
file_name: 2020_EcologyLetters_Rybicki.pdf
file_size: 3005474
relation: main_file
file_date_updated: 2020-07-14T12:47:54Z
has_accepted_license: '1'
intvolume: ' 23'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 506-517
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: 26A5D39A-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '840605'
name: Coordination in constrained and natural distributed systems
publication: Ecology Letters
publication_identifier:
eissn:
- 1461-0248
issn:
- 1461-023X
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Habitat fragmentation and species diversity in competitive communities
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 23
year: '2020'
...
---
_id: '8329'
abstract:
- lang: eng
text: We show the synthesis of a redox‐active quinone, 2‐methoxy‐1,4‐hydroquinone
(MHQ), from a bio‐based feedstock and its suitability as electrolyte in aqueous
redox flow batteries. We identified semiquinone intermediates at insufficiently
low pH and quinoid radicals as responsible for decomposition of MHQ under electrochemical
conditions. Both can be avoided and/or stabilized, respectively, using H 3 PO
4 electrolyte, allowing for reversible cycling in a redox flow battery for hundreds
of cycles.
acknowledgement: The Austrian Research Promotion Agency (FFG) is gratefully acknowledged
for financial support of the project LignoBatt (860429).
article_processing_charge: No
article_type: original
author:
- first_name: Werner
full_name: Schlemmer, Werner
last_name: Schlemmer
- first_name: Philipp
full_name: Nothdurft, Philipp
last_name: Nothdurft
- first_name: Alina
full_name: Petzold, Alina
last_name: Petzold
- first_name: Philipp
full_name: Frühwirt, Philipp
last_name: Frühwirt
- first_name: Max
full_name: Schmallegger, Max
last_name: Schmallegger
- first_name: Georg
full_name: Gescheidt-Demner, Georg
last_name: Gescheidt-Demner
- first_name: Roland
full_name: Fischer, Roland
last_name: Fischer
- first_name: Stefan Alexander
full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
- first_name: Wolfgang
full_name: Kern, Wolfgang
last_name: Kern
- first_name: Stefan
full_name: Spirk, Stefan
last_name: Spirk
citation:
ama: Schlemmer W, Nothdurft P, Petzold A, et al. 2‐methoxyhydroquinone from vanillin
for aqueous redox‐flow batteries. Angewandte Chemie International Edition.
2020;59(51):22943-22946. doi:10.1002/anie.202008253
apa: Schlemmer, W., Nothdurft, P., Petzold, A., Frühwirt, P., Schmallegger, M.,
Gescheidt-Demner, G., … Spirk, S. (2020). 2‐methoxyhydroquinone from vanillin
for aqueous redox‐flow batteries. Angewandte Chemie International Edition.
Wiley. https://doi.org/10.1002/anie.202008253
chicago: Schlemmer, Werner, Philipp Nothdurft, Alina Petzold, Philipp Frühwirt,
Max Schmallegger, Georg Gescheidt-Demner, Roland Fischer, Stefan Alexander Freunberger,
Wolfgang Kern, and Stefan Spirk. “2‐methoxyhydroquinone from Vanillin for Aqueous
Redox‐flow Batteries.” Angewandte Chemie International Edition. Wiley,
2020. https://doi.org/10.1002/anie.202008253.
ieee: W. Schlemmer et al., “2‐methoxyhydroquinone from vanillin for aqueous
redox‐flow batteries,” Angewandte Chemie International Edition, vol. 59,
no. 51. Wiley, pp. 22943–22946, 2020.
ista: Schlemmer W, Nothdurft P, Petzold A, Frühwirt P, Schmallegger M, Gescheidt-Demner
G, Fischer R, Freunberger SA, Kern W, Spirk S. 2020. 2‐methoxyhydroquinone from
vanillin for aqueous redox‐flow batteries. Angewandte Chemie International Edition.
59(51), 22943–22946.
mla: Schlemmer, Werner, et al. “2‐methoxyhydroquinone from Vanillin for Aqueous
Redox‐flow Batteries.” Angewandte Chemie International Edition, vol. 59,
no. 51, Wiley, 2020, pp. 22943–46, doi:10.1002/anie.202008253.
short: W. Schlemmer, P. Nothdurft, A. Petzold, P. Frühwirt, M. Schmallegger, G.
Gescheidt-Demner, R. Fischer, S.A. Freunberger, W. Kern, S. Spirk, Angewandte
Chemie International Edition 59 (2020) 22943–22946.
date_created: 2020-09-03T16:10:56Z
date_published: 2020-12-14T00:00:00Z
date_updated: 2023-09-05T16:03:47Z
day: '14'
department:
- _id: StFr
doi: 10.1002/anie.202008253
external_id:
isi:
- '000576148700001'
intvolume: ' 59'
isi: 1
issue: '51'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1002/anie.202008253
month: '12'
oa: 1
oa_version: Published Version
page: 22943-22946
publication: Angewandte Chemie International Edition
publication_identifier:
eissn:
- 1521-3773
issn:
- 1433-7851
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
record:
- id: '9780'
relation: research_data
status: public
scopus_import: '1'
status: public
title: 2‐methoxyhydroquinone from vanillin for aqueous redox‐flow batteries
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 59
year: '2020'
...
---
_id: '13060'
abstract:
- lang: eng
text: Coinfections with multiple pathogens can result in complex within-host dynamics
affecting virulence and transmission. Whilst multiple infections are intensively
studied in solitary hosts, it is so far unresolved how social host interactions
interfere with pathogen competition, and if this depends on coinfection diversity.
We studied how the collective disease defenses of ants – their social immunity
– influence pathogen competition in coinfections of same or different fungal
pathogen species. Social immunity reduced virulence for all pathogen combinations,
but interfered with spore production only in different-species coinfections. Here,
it decreased overall pathogen sporulation success, whilst simultaneously increasing
co-sporulation on individual cadavers and maintaining a higher pathogen diversity
at the community-level. Mathematical modeling revealed that host sanitary care
alone can modulate competitive outcomes between pathogens, giving advantage to
fast-germinating, thus less grooming-sensitive ones. Host social interactions
can hence modulate infection dynamics in coinfected group members, thereby altering
pathogen communities at the host- and population-level.
article_processing_charge: No
author:
- first_name: Barbara
full_name: Milutinovic, Barbara
id: 2CDC32B8-F248-11E8-B48F-1D18A9856A87
last_name: Milutinovic
orcid: 0000-0002-8214-4758
- first_name: Miriam
full_name: Stock, Miriam
id: 42462816-F248-11E8-B48F-1D18A9856A87
last_name: Stock
- first_name: Anna V
full_name: Grasse, Anna V
id: 406F989C-F248-11E8-B48F-1D18A9856A87
last_name: Grasse
- first_name: Elisabeth
full_name: Naderlinger, Elisabeth
id: 31757262-F248-11E8-B48F-1D18A9856A87
last_name: Naderlinger
- first_name: Christian
full_name: Hilbe, Christian
id: 2FDF8F3C-F248-11E8-B48F-1D18A9856A87
last_name: Hilbe
orcid: 0000-0001-5116-955X
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
citation:
ama: Milutinovic B, Stock M, Grasse AV, Naderlinger E, Hilbe C, Cremer S. Social
immunity modulates competition between coinfecting pathogens. 2020. doi:10.5061/DRYAD.CRJDFN318
apa: Milutinovic, B., Stock, M., Grasse, A. V., Naderlinger, E., Hilbe, C., &
Cremer, S. (2020). Social immunity modulates competition between coinfecting pathogens.
Dryad. https://doi.org/10.5061/DRYAD.CRJDFN318
chicago: Milutinovic, Barbara, Miriam Stock, Anna V Grasse, Elisabeth Naderlinger,
Christian Hilbe, and Sylvia Cremer. “Social Immunity Modulates Competition between
Coinfecting Pathogens.” Dryad, 2020. https://doi.org/10.5061/DRYAD.CRJDFN318.
ieee: B. Milutinovic, M. Stock, A. V. Grasse, E. Naderlinger, C. Hilbe, and S. Cremer,
“Social immunity modulates competition between coinfecting pathogens.” Dryad,
2020.
ista: Milutinovic B, Stock M, Grasse AV, Naderlinger E, Hilbe C, Cremer S. 2020.
Social immunity modulates competition between coinfecting pathogens, Dryad, 10.5061/DRYAD.CRJDFN318.
mla: Milutinovic, Barbara, et al. Social Immunity Modulates Competition between
Coinfecting Pathogens. Dryad, 2020, doi:10.5061/DRYAD.CRJDFN318.
short: B. Milutinovic, M. Stock, A.V. Grasse, E. Naderlinger, C. Hilbe, S. Cremer,
(2020).
date_created: 2023-05-23T16:11:22Z
date_published: 2020-12-19T00:00:00Z
date_updated: 2023-09-05T16:04:48Z
day: '19'
ddc:
- '570'
department:
- _id: SyCr
- _id: KrCh
doi: 10.5061/DRYAD.CRJDFN318
license: https://creativecommons.org/publicdomain/zero/1.0/
main_file_link:
- open_access: '1'
url: https://doi.org/10.5061/dryad.crjdfn318
month: '12'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
record:
- id: '7343'
relation: used_in_publication
status: public
status: public
title: Social immunity modulates competition between coinfecting pathogens
tmp:
image: /images/cc_0.png
legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
name: Creative Commons Public Domain Dedication (CC0 1.0)
short: CC0 (1.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '9780'
abstract:
- lang: eng
text: "PADREV : 4,4'-dimethoxy[1,1'-biphenyl]-2,2',5,5'-tetrol\r\nSpace Group: C
2 (5), Cell: a 24.488(16)Å b 5.981(4)Å c 3.911(3)Å, α 90° β 91.47(3)° γ 90°"
article_processing_charge: No
author:
- first_name: Werner
full_name: Schlemmer, Werner
last_name: Schlemmer
- first_name: Philipp
full_name: Nothdurft, Philipp
last_name: Nothdurft
- first_name: Alina
full_name: Petzold, Alina
last_name: Petzold
- first_name: Gisbert
full_name: Riess, Gisbert
last_name: Riess
- first_name: Philipp
full_name: Frühwirt, Philipp
last_name: Frühwirt
- first_name: Max
full_name: Schmallegger, Max
last_name: Schmallegger
- first_name: Georg
full_name: Gescheidt-Demner, Georg
last_name: Gescheidt-Demner
- first_name: Roland
full_name: Fischer, Roland
last_name: Fischer
- first_name: Stefan Alexander
full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
- first_name: Wolfgang
full_name: Kern, Wolfgang
last_name: Kern
- first_name: Stefan
full_name: Spirk, Stefan
last_name: Spirk
citation:
ama: 'Schlemmer W, Nothdurft P, Petzold A, et al. CCDC 1991959: Experimental Crystal
Structure Determination. 2020. doi:10.5517/ccdc.csd.cc24vsrk'
apa: 'Schlemmer, W., Nothdurft, P., Petzold, A., Riess, G., Frühwirt, P., Schmallegger,
M., … Spirk, S. (2020). CCDC 1991959: Experimental Crystal Structure Determination.
CCDC. https://doi.org/10.5517/ccdc.csd.cc24vsrk'
chicago: 'Schlemmer, Werner, Philipp Nothdurft, Alina Petzold, Gisbert Riess, Philipp
Frühwirt, Max Schmallegger, Georg Gescheidt-Demner, et al. “CCDC 1991959: Experimental
Crystal Structure Determination.” CCDC, 2020. https://doi.org/10.5517/ccdc.csd.cc24vsrk.'
ieee: 'W. Schlemmer et al., “CCDC 1991959: Experimental Crystal Structure
Determination.” CCDC, 2020.'
ista: 'Schlemmer W, Nothdurft P, Petzold A, Riess G, Frühwirt P, Schmallegger M,
Gescheidt-Demner G, Fischer R, Freunberger SA, Kern W, Spirk S. 2020. CCDC 1991959:
Experimental Crystal Structure Determination, CCDC, 10.5517/ccdc.csd.cc24vsrk.'
mla: 'Schlemmer, Werner, et al. CCDC 1991959: Experimental Crystal Structure
Determination. CCDC, 2020, doi:10.5517/ccdc.csd.cc24vsrk.'
short: W. Schlemmer, P. Nothdurft, A. Petzold, G. Riess, P. Frühwirt, M. Schmallegger,
G. Gescheidt-Demner, R. Fischer, S.A. Freunberger, W. Kern, S. Spirk, (2020).
date_created: 2021-08-06T07:41:07Z
date_published: 2020-03-22T00:00:00Z
date_updated: 2023-09-05T16:03:47Z
day: '22'
department:
- _id: StFr
doi: 10.5517/ccdc.csd.cc24vsrk
main_file_link:
- open_access: '1'
url: https://dx.doi.org/10.5517/ccdc.csd.cc24vsrk
month: '03'
oa: 1
oa_version: Published Version
publisher: CCDC
related_material:
record:
- id: '8329'
relation: used_in_publication
status: public
status: public
title: 'CCDC 1991959: Experimental Crystal Structure Determination'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2020'
...
---
_id: '7207'
abstract:
- lang: eng
text: The hippocampus plays key roles in learning and memory and is a main target
of Alzheimer's disease (AD), which causes progressive memory impairments. Despite
numerous investigations about the processes required for the normal hippocampal
functions, the neurotransmitter receptors involved in the synaptic deficits by
which AD disables the hippocampus are not yet characterized. By combining histoblots,
western blots, immunohistochemistry and high‐resolution immunoelectron microscopic
methods for GABAB receptors, this study provides a quantitative description of
the expression and the subcellular localization of GABAB1 in the hippocampus in
a mouse model of AD at 1, 6 and 12 months of age. Western blots and histoblots
showed that the total amount of protein and the laminar expression pattern of
GABAB1 were similar in APP/PS1 mice and in age‐matched wild‐type mice. In contrast,
immunoelectron microscopic techniques showed that the subcellular localization
of GABAB1 subunit did not change significantly in APP/PS1 mice at 1 month of age,
was significantly reduced in the stratum lacunosum‐moleculare of CA1 pyramidal
cells at 6 months of age and significantly reduced at the membrane surface of
CA1 pyramidal cells at 12 months of age. This reduction of plasma membrane GABAB1
was paralleled by a significant increase of the subunit at the intracellular sites.
We further observed a decrease of membrane‐targeted GABAB receptors in axon terminals
contacting CA1 pyramidal cells. Our data demonstrate compartment‐ and age‐dependent
reduction of plasma membrane‐targeted GABAB receptors in the CA1 region of the
hippocampus, suggesting that this decrease might be enough to alter the GABAB‐mediated
synaptic transmission taking place in AD.
article_processing_charge: No
article_type: original
author:
- first_name: Alejandro
full_name: Martín-Belmonte, Alejandro
last_name: Martín-Belmonte
- first_name: Carolina
full_name: Aguado, Carolina
last_name: Aguado
- first_name: Rocío
full_name: Alfaro-Ruíz, Rocío
last_name: Alfaro-Ruíz
- first_name: Ana Esther
full_name: Moreno-Martínez, Ana Esther
last_name: Moreno-Martínez
- first_name: Luis
full_name: De La Ossa, Luis
last_name: De La Ossa
- first_name: José
full_name: Martínez-Hernández, José
last_name: Martínez-Hernández
- first_name: Alain
full_name: Buisson, Alain
last_name: Buisson
- first_name: Simon
full_name: Früh, Simon
last_name: Früh
- first_name: Bernhard
full_name: Bettler, Bernhard
last_name: Bettler
- first_name: Ryuichi
full_name: Shigemoto, Ryuichi
id: 499F3ABC-F248-11E8-B48F-1D18A9856A87
last_name: Shigemoto
orcid: 0000-0001-8761-9444
- first_name: Yugo
full_name: Fukazawa, Yugo
last_name: Fukazawa
- first_name: Rafael
full_name: Luján, Rafael
last_name: Luján
citation:
ama: Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, et al. Reduction in the neuronal
surface of post and presynaptic GABA>B< receptors in the hippocampus in
a mouse model of Alzheimer’s disease. Brain Pathology. 2020;30(3):554-575.
doi:10.1111/bpa.12802
apa: Martín-Belmonte, A., Aguado, C., Alfaro-Ruíz, R., Moreno-Martínez, A. E., De
La Ossa, L., Martínez-Hernández, J., … Luján, R. (2020). Reduction in the neuronal
surface of post and presynaptic GABA>B< receptors in the hippocampus in
a mouse model of Alzheimer’s disease. Brain Pathology. Wiley. https://doi.org/10.1111/bpa.12802
chicago: Martín-Belmonte, Alejandro, Carolina Aguado, Rocío Alfaro-Ruíz, Ana Esther
Moreno-Martínez, Luis De La Ossa, José Martínez-Hernández, Alain Buisson, et al.
“Reduction in the Neuronal Surface of Post and Presynaptic GABA>B< Receptors
in the Hippocampus in a Mouse Model of Alzheimer’s Disease.” Brain Pathology.
Wiley, 2020. https://doi.org/10.1111/bpa.12802.
ieee: A. Martín-Belmonte et al., “Reduction in the neuronal surface of post
and presynaptic GABA>B< receptors in the hippocampus in a mouse model
of Alzheimer’s disease,” Brain Pathology, vol. 30, no. 3. Wiley, pp. 554–575,
2020.
ista: Martín-Belmonte A, Aguado C, Alfaro-Ruíz R, Moreno-Martínez AE, De La Ossa
L, Martínez-Hernández J, Buisson A, Früh S, Bettler B, Shigemoto R, Fukazawa Y,
Luján R. 2020. Reduction in the neuronal surface of post and presynaptic GABA>B<
receptors in the hippocampus in a mouse model of Alzheimer’s disease. Brain Pathology.
30(3), 554–575.
mla: Martín-Belmonte, Alejandro, et al. “Reduction in the Neuronal Surface of Post
and Presynaptic GABA>B< Receptors in the Hippocampus in a Mouse Model
of Alzheimer’s Disease.” Brain Pathology, vol. 30, no. 3, Wiley, 2020,
pp. 554–75, doi:10.1111/bpa.12802.
short: A. Martín-Belmonte, C. Aguado, R. Alfaro-Ruíz, A.E. Moreno-Martínez, L. De
La Ossa, J. Martínez-Hernández, A. Buisson, S. Früh, B. Bettler, R. Shigemoto,
Y. Fukazawa, R. Luján, Brain Pathology 30 (2020) 554–575.
date_created: 2019-12-22T23:00:43Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2023-09-06T14:48:01Z
day: '01'
ddc:
- '570'
department:
- _id: RySh
doi: 10.1111/bpa.12802
ec_funded: 1
external_id:
isi:
- '000502270900001'
pmid:
- '31729777'
file:
- access_level: open_access
checksum: 549cc1b18f638a21d17a939ba5563fa9
content_type: application/pdf
creator: dernst
date_created: 2020-09-22T09:47:19Z
date_updated: 2020-09-22T09:47:19Z
file_id: '8554'
file_name: 2020_BrainPathology_MartinBelmonte.pdf
file_size: 4220935
relation: main_file
success: 1
file_date_updated: 2020-09-22T09:47:19Z
has_accepted_license: '1'
intvolume: ' 30'
isi: 1
issue: '3'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 554-575
pmid: 1
project:
- _id: 25CBA828-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '720270'
name: Human Brain Project Specific Grant Agreement 1 (HBP SGA 1)
- _id: 26436750-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '785907'
name: Human Brain Project Specific Grant Agreement 2 (HBP SGA 2)
publication: Brain Pathology
publication_identifier:
eissn:
- '17503639'
issn:
- '10156305'
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Reduction in the neuronal surface of post and presynaptic GABA>B< receptors
in the hippocampus in a mouse model of Alzheimer's disease
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 30
year: '2020'
...
---
_id: '7205'
abstract:
- lang: eng
text: Genetic incompatibilities contribute to reproductive isolation between many
diverging populations, but it is still unclear to what extent they play a role
if divergence happens with gene flow. In contact zones between the "Crab" and
"Wave" ecotypes of the snail Littorina saxatilis, divergent selection forms strong
barriers to gene flow, while the role of post‐zygotic barriers due to selection
against hybrids remains unclear. High embryo abortion rates in this species could
indicate the presence of such barriers. Post‐zygotic barriers might include genetic
incompatibilities (e.g. Dobzhansky–Muller incompatibilities) but also maladaptation,
both expected to be most pronounced in contact zones. In addition, embryo abortion
might reflect physiological stress on females and embryos independent of any genetic
stress. We examined all embryos of >500 females sampled outside and inside contact
zones of three populations in Sweden. Females' clutch size ranged from 0 to 1,011
embryos (mean 130 ± 123), and abortion rates varied between 0% and 100% (mean
12%). We described female genotypes by using a hybrid index based on hundreds
of SNPs differentiated between ecotypes with which we characterized female genotypes.
We also calculated female SNP heterozygosity and inversion karyotype. Clutch size
did not vary with female hybrid index, and abortion rates were only weakly related
to hybrid index in two sites but not at all in a third site. No additional variation
in abortion rate was explained by female SNP heterozygosity, but increased female
inversion heterozygosity added slightly to increased abortion. Our results show
only weak and probably biologically insignificant post‐zygotic barriers contributing
to ecotype divergence, and the high and variable abortion rates were marginally,
if at all, explained by hybrid index of females.
article_processing_charge: No
article_type: original
author:
- first_name: Kerstin
full_name: Johannesson, Kerstin
last_name: Johannesson
- first_name: Zuzanna
full_name: Zagrodzka, Zuzanna
last_name: Zagrodzka
- first_name: Rui
full_name: Faria, Rui
last_name: Faria
- first_name: Anja M
full_name: Westram, Anja M
id: 3C147470-F248-11E8-B48F-1D18A9856A87
last_name: Westram
orcid: 0000-0003-1050-4969
- first_name: Roger K.
full_name: Butlin, Roger K.
last_name: Butlin
citation:
ama: Johannesson K, Zagrodzka Z, Faria R, Westram AM, Butlin RK. Is embryo abortion
a post-zygotic barrier to gene flow between Littorina ecotypes? Journal of
Evolutionary Biology. 2020;33(3):342-351. doi:10.1111/jeb.13570
apa: Johannesson, K., Zagrodzka, Z., Faria, R., Westram, A. M., & Butlin, R.
K. (2020). Is embryo abortion a post-zygotic barrier to gene flow between Littorina
ecotypes? Journal of Evolutionary Biology. Wiley. https://doi.org/10.1111/jeb.13570
chicago: Johannesson, Kerstin, Zuzanna Zagrodzka, Rui Faria, Anja M Westram, and
Roger K. Butlin. “Is Embryo Abortion a Post-Zygotic Barrier to Gene Flow between
Littorina Ecotypes?” Journal of Evolutionary Biology. Wiley, 2020. https://doi.org/10.1111/jeb.13570.
ieee: K. Johannesson, Z. Zagrodzka, R. Faria, A. M. Westram, and R. K. Butlin, “Is
embryo abortion a post-zygotic barrier to gene flow between Littorina ecotypes?,”
Journal of Evolutionary Biology, vol. 33, no. 3. Wiley, pp. 342–351, 2020.
ista: Johannesson K, Zagrodzka Z, Faria R, Westram AM, Butlin RK. 2020. Is embryo
abortion a post-zygotic barrier to gene flow between Littorina ecotypes? Journal
of Evolutionary Biology. 33(3), 342–351.
mla: Johannesson, Kerstin, et al. “Is Embryo Abortion a Post-Zygotic Barrier to
Gene Flow between Littorina Ecotypes?” Journal of Evolutionary Biology,
vol. 33, no. 3, Wiley, 2020, pp. 342–51, doi:10.1111/jeb.13570.
short: K. Johannesson, Z. Zagrodzka, R. Faria, A.M. Westram, R.K. Butlin, Journal
of Evolutionary Biology 33 (2020) 342–351.
date_created: 2019-12-22T23:00:43Z
date_published: 2020-03-01T00:00:00Z
date_updated: 2023-09-06T14:48:57Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1111/jeb.13570
external_id:
isi:
- '000500954800001'
pmid:
- '31724256'
file:
- access_level: open_access
checksum: 7534ff0839709c0c5265c12d29432f03
content_type: application/pdf
creator: dernst
date_created: 2020-09-22T09:42:18Z
date_updated: 2020-09-22T09:42:18Z
file_id: '8553'
file_name: 2020_EvolBiology_Johannesson.pdf
file_size: 885611
relation: main_file
success: 1
file_date_updated: 2020-09-22T09:42:18Z
has_accepted_license: '1'
intvolume: ' 33'
isi: 1
issue: '3'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 342-351
pmid: 1
publication: Journal of Evolutionary Biology
publication_identifier:
eissn:
- '14209101'
issn:
- 1010061X
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
record:
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relation: research_data
status: public
scopus_import: '1'
status: public
title: Is embryo abortion a post-zygotic barrier to gene flow between Littorina ecotypes?
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 33
year: '2020'
...
---
_id: '7417'
abstract:
- lang: eng
text: Previously, we reported that the allelic de-etiolated by zinc (dez) and trichome
birefringence (tbr) mutants exhibit photomorphogenic development in the dark,
which is enhanced by high Zn. TRICHOME BIREFRINGENCE-LIKE proteins had been implicated
in transferring acetyl groups to various hemicelluloses. Pectin O-acetylation
levels were lower in dark-grown dez seedlings than in the wild type. We observed
Zn-enhanced photomorphogenesis in the dark also in the reduced wall acetylation
2 (rwa2-3) mutant, which exhibits lowered O-acetylation levels of cell wall macromolecules
including pectins and xyloglucans, supporting a role for cell wall macromolecule
O-acetylation in the photomorphogenic phenotypes of rwa2-3 and dez. Application
of very short oligogalacturonides (vsOGs) restored skotomorphogenesis in dark-grown
dez and rwa2-3. Here we demonstrate that in dez, O-acetylation of non-pectin cell
wall components, notably of xyloglucan, is enhanced. Our results highlight the
complexity of cell wall homeostasis and indicate against an influence of xyloglucan
O-acetylation on light-dependent seedling development.
article_number: e1687185
article_processing_charge: No
article_type: original
author:
- first_name: Scott A
full_name: Sinclair, Scott A
id: 2D99FE6A-F248-11E8-B48F-1D18A9856A87
last_name: Sinclair
orcid: 0000-0002-4566-0593
- first_name: S.
full_name: Gille, S.
last_name: Gille
- first_name: M.
full_name: Pauly, M.
last_name: Pauly
- first_name: U.
full_name: Krämer, U.
last_name: Krämer
citation:
ama: Sinclair SA, Gille S, Pauly M, Krämer U. Regulation of acetylation of plant
cell wall components is complex and responds to external stimuli. Plant Signaling
& Behavior. 2020;15(1). doi:10.1080/15592324.2019.1687185
apa: Sinclair, S. A., Gille, S., Pauly, M., & Krämer, U. (2020). Regulation
of acetylation of plant cell wall components is complex and responds to external
stimuli. Plant Signaling & Behavior. Informa UK Limited. https://doi.org/10.1080/15592324.2019.1687185
chicago: Sinclair, Scott A, S. Gille, M. Pauly, and U. Krämer. “Regulation of Acetylation
of Plant Cell Wall Components Is Complex and Responds to External Stimuli.” Plant
Signaling & Behavior. Informa UK Limited, 2020. https://doi.org/10.1080/15592324.2019.1687185.
ieee: S. A. Sinclair, S. Gille, M. Pauly, and U. Krämer, “Regulation of acetylation
of plant cell wall components is complex and responds to external stimuli,” Plant
Signaling & Behavior, vol. 15, no. 1. Informa UK Limited, 2020.
ista: Sinclair SA, Gille S, Pauly M, Krämer U. 2020. Regulation of acetylation of
plant cell wall components is complex and responds to external stimuli. Plant
Signaling & Behavior. 15(1), e1687185.
mla: Sinclair, Scott A., et al. “Regulation of Acetylation of Plant Cell Wall Components
Is Complex and Responds to External Stimuli.” Plant Signaling & Behavior,
vol. 15, no. 1, e1687185, Informa UK Limited, 2020, doi:10.1080/15592324.2019.1687185.
short: S.A. Sinclair, S. Gille, M. Pauly, U. Krämer, Plant Signaling & Behavior
15 (2020).
date_created: 2020-01-30T10:14:14Z
date_published: 2020-01-01T00:00:00Z
date_updated: 2023-09-06T15:23:04Z
day: '01'
department:
- _id: JiFr
doi: 10.1080/15592324.2019.1687185
external_id:
isi:
- '000494907500001'
pmid:
- '31696770'
intvolume: ' 15'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7012154
month: '01'
oa: 1
oa_version: Submitted Version
pmid: 1
publication: Plant Signaling & Behavior
publication_identifier:
issn:
- 1559-2324
publication_status: published
publisher: Informa UK Limited
quality_controlled: '1'
scopus_import: '1'
status: public
title: Regulation of acetylation of plant cell wall components is complex and responds
to external stimuli
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 15
year: '2020'
...
---
_id: '6185'
abstract:
- lang: eng
text: For complex Wigner-type matrices, i.e. Hermitian random matrices with independent,
not necessarily identically distributed entries above the diagonal, we show that
at any cusp singularity of the limiting eigenvalue distribution the local eigenvalue
statistics are universal and form a Pearcey process. Since the density of states
typically exhibits only square root or cubic root cusp singularities, our work
complements previous results on the bulk and edge universality and it thus completes
the resolution of the Wigner–Dyson–Mehta universality conjecture for the last
remaining universality type in the complex Hermitian class. Our analysis holds
not only for exact cusps, but approximate cusps as well, where an extended Pearcey
process emerges. As a main technical ingredient we prove an optimal local law
at the cusp for both symmetry classes. This result is also the key input in the
companion paper (Cipolloni et al. in Pure Appl Anal, 2018. arXiv:1811.04055) where
the cusp universality for real symmetric Wigner-type matrices is proven. The novel
cusp fluctuation mechanism is also essential for the recent results on the spectral
radius of non-Hermitian random matrices (Alt et al. in Spectral radius of random
matrices with independent entries, 2019. arXiv:1907.13631), and the non-Hermitian
edge universality (Cipolloni et al. in Edge universality for non-Hermitian random
matrices, 2019. arXiv:1908.00969).
acknowledgement: Open access funding provided by Institute of Science and Technology
(IST Austria). The authors are very grateful to Johannes Alt for numerous discussions
on the Dyson equation and for his invaluable help in adjusting [10] to the needs
of the present work.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: László
full_name: Erdös, László
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
- first_name: Torben H
full_name: Krüger, Torben H
id: 3020C786-F248-11E8-B48F-1D18A9856A87
last_name: Krüger
orcid: 0000-0002-4821-3297
- first_name: Dominik J
full_name: Schröder, Dominik J
id: 408ED176-F248-11E8-B48F-1D18A9856A87
last_name: Schröder
orcid: 0000-0002-2904-1856
citation:
ama: 'Erdös L, Krüger TH, Schröder DJ. Cusp universality for random matrices I:
Local law and the complex Hermitian case. Communications in Mathematical Physics.
2020;378:1203-1278. doi:10.1007/s00220-019-03657-4'
apa: 'Erdös, L., Krüger, T. H., & Schröder, D. J. (2020). Cusp universality
for random matrices I: Local law and the complex Hermitian case. Communications
in Mathematical Physics. Springer Nature. https://doi.org/10.1007/s00220-019-03657-4'
chicago: 'Erdös, László, Torben H Krüger, and Dominik J Schröder. “Cusp Universality
for Random Matrices I: Local Law and the Complex Hermitian Case.” Communications
in Mathematical Physics. Springer Nature, 2020. https://doi.org/10.1007/s00220-019-03657-4.'
ieee: 'L. Erdös, T. H. Krüger, and D. J. Schröder, “Cusp universality for random
matrices I: Local law and the complex Hermitian case,” Communications in Mathematical
Physics, vol. 378. Springer Nature, pp. 1203–1278, 2020.'
ista: 'Erdös L, Krüger TH, Schröder DJ. 2020. Cusp universality for random matrices
I: Local law and the complex Hermitian case. Communications in Mathematical Physics.
378, 1203–1278.'
mla: 'Erdös, László, et al. “Cusp Universality for Random Matrices I: Local Law
and the Complex Hermitian Case.” Communications in Mathematical Physics,
vol. 378, Springer Nature, 2020, pp. 1203–78, doi:10.1007/s00220-019-03657-4.'
short: L. Erdös, T.H. Krüger, D.J. Schröder, Communications in Mathematical Physics
378 (2020) 1203–1278.
date_created: 2019-03-28T10:21:15Z
date_published: 2020-09-01T00:00:00Z
date_updated: 2023-09-07T12:54:12Z
day: '01'
ddc:
- '530'
- '510'
department:
- _id: LaEr
doi: 10.1007/s00220-019-03657-4
ec_funded: 1
external_id:
arxiv:
- '1809.03971'
isi:
- '000529483000001'
file:
- access_level: open_access
checksum: c3a683e2afdcea27afa6880b01e53dc2
content_type: application/pdf
creator: dernst
date_created: 2020-11-18T11:14:37Z
date_updated: 2020-11-18T11:14:37Z
file_id: '8771'
file_name: 2020_CommMathPhysics_Erdoes.pdf
file_size: 2904574
relation: main_file
success: 1
file_date_updated: 2020-11-18T11:14:37Z
has_accepted_license: '1'
intvolume: ' 378'
isi: 1
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: 1203-1278
project:
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '338804'
name: Random matrices, universality and disordered quantum systems
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
publication: Communications in Mathematical Physics
publication_identifier:
eissn:
- 1432-0916
issn:
- 0010-3616
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
record:
- id: '6179'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: 'Cusp universality for random matrices I: Local law and the complex Hermitian
case'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 378
year: '2020'
...
---
_id: '7629'
abstract:
- lang: eng
text: "This thesis is based on three main topics: In the first part, we study convergence
of discrete gradient flow structures associated with regular finite-volume discretisations
of Fokker-Planck equations. We show evolutionary I convergence of the discrete
gradient flows to the L2-Wasserstein gradient flow corresponding to the solution
of a Fokker-Planck\r\nequation in arbitrary dimension d >= 1. Along the argument,
we prove Mosco- and I-convergence results for discrete energy functionals, which
are of independent interest for convergence of equivalent gradient flow structures
in Hilbert spaces.\r\nThe second part investigates L2-Wasserstein flows on metric
graph. The starting point is a Benamou-Brenier formula for the L2-Wasserstein
distance, which is proved via a regularisation scheme for solutions of the continuity
equation, adapted to the peculiar geometric structure of metric graphs. Based
on those results, we show that the L2-Wasserstein space over a metric graph admits
a gradient flow which may be identified as a solution of a Fokker-Planck equation.\r\nIn
the third part, we focus again on the discrete gradient flows, already encountered
in the first part. We propose a variational structure which extends the gradient
flow structure to Markov chains violating the detailed-balance conditions. Using
this structure, we characterise contraction estimates for the discrete heat flow
in terms of convexity of\r\ncorresponding path-dependent energy functionals. In
addition, we use this approach to derive several functional inequalities for said
functionals."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Dominik L
full_name: Forkert, Dominik L
id: 35C79D68-F248-11E8-B48F-1D18A9856A87
last_name: Forkert
citation:
ama: Forkert DL. Gradient flows in spaces of probability measures for finite-volume
schemes, metric graphs and non-reversible Markov chains. 2020. doi:10.15479/AT:ISTA:7629
apa: Forkert, D. L. (2020). Gradient flows in spaces of probability measures
for finite-volume schemes, metric graphs and non-reversible Markov chains.
Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:7629
chicago: Forkert, Dominik L. “Gradient Flows in Spaces of Probability Measures for
Finite-Volume Schemes, Metric Graphs and Non-Reversible Markov Chains.” Institute
of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:7629.
ieee: D. L. Forkert, “Gradient flows in spaces of probability measures for finite-volume
schemes, metric graphs and non-reversible Markov chains,” Institute of Science
and Technology Austria, 2020.
ista: Forkert DL. 2020. Gradient flows in spaces of probability measures for finite-volume
schemes, metric graphs and non-reversible Markov chains. Institute of Science
and Technology Austria.
mla: Forkert, Dominik L. Gradient Flows in Spaces of Probability Measures for
Finite-Volume Schemes, Metric Graphs and Non-Reversible Markov Chains. Institute
of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:7629.
short: D.L. Forkert, Gradient Flows in Spaces of Probability Measures for Finite-Volume
Schemes, Metric Graphs and Non-Reversible Markov Chains, Institute of Science
and Technology Austria, 2020.
date_created: 2020-04-02T06:40:23Z
date_published: 2020-03-31T00:00:00Z
date_updated: 2023-09-07T13:03:12Z
day: '31'
ddc:
- '510'
degree_awarded: PhD
department:
- _id: JaMa
doi: 10.15479/AT:ISTA:7629
ec_funded: 1
file:
- access_level: open_access
checksum: c814a1a6195269ca6fe48b0dca45ae8a
content_type: application/pdf
creator: dernst
date_created: 2020-04-14T10:47:59Z
date_updated: 2020-07-14T12:48:01Z
file_id: '7657'
file_name: Thesis_Forkert_PDFA.pdf
file_size: 3297129
relation: main_file
- access_level: closed
checksum: ceafb53f923d1b5bdf14b2b0f22e4a81
content_type: application/x-zip-compressed
creator: dernst
date_created: 2020-04-14T10:47:59Z
date_updated: 2020-07-14T12:48:01Z
file_id: '7658'
file_name: Thesis_Forkert_source.zip
file_size: 1063908
relation: source_file
file_date_updated: 2020-07-14T12:48:01Z
has_accepted_license: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: '154'
project:
- _id: 256E75B8-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '716117'
name: Optimal Transport and Stochastic Dynamics
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
status: public
supervisor:
- first_name: Jan
full_name: Maas, Jan
id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
last_name: Maas
orcid: 0000-0002-0845-1338
title: Gradient flows in spaces of probability measures for finite-volume schemes,
metric graphs and non-reversible Markov chains
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2020'
...
---
_id: '8574'
abstract:
- lang: eng
text: "This thesis concerns itself with the interactions of evolutionary and ecological
forces and the consequences on genetic diversity and the ultimate survival of
populations. It is important to understand what signals processes \r\nleave on
the genome and what we can infer from such data, which is usually abundant but
noisy. Furthermore, understanding how and when populations adapt or go extinct
is important for practical purposes, such as the genetic management of populations,
as well as for theoretical questions, since local adaptation can be the first
step toward speciation. \r\nIn Chapter 2, we introduce the method of maximum entropy
to approximate the demographic changes of a population in a simple setting, namely
the logistic growth model with immigration. We show that this method is not only
a powerful \r\ntool in physics but can be gainfully applied in an ecological framework.
We investigate how well it approximates the real \r\nbehavior of the system, and
find that is does so, even in unexpected situations. Finally, we illustrate how
it can model changing environments.\r\nIn Chapter 3, we analyze the co-evolution
of allele frequencies and population sizes in an infinite island model.\r\nWe
give conditions under which polygenic adaptation to a rare habitat is possible.
The model we use is based on the diffusion approximation, considers eco-evolutionary
feedback mechanisms (hard selection), and treats both \r\ndrift and environmental
fluctuations explicitly. We also look at limiting scenarios, for which we derive
analytical expressions. \r\nIn Chapter 4, we present a coalescent based simulation
tool to obtain patterns of diversity in a spatially explicit subdivided population,
in which the demographic history of each subpopulation can be specified. We compare
\r\nthe results to existing predictions, and explore the relative importance of
time and space under a variety of spatial arrangements and demographic histories,
such as expansion and extinction. \r\nIn the last chapter, we give a brief outlook
to further research. "
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Eniko
full_name: Szep, Eniko
id: 485BB5A4-F248-11E8-B48F-1D18A9856A87
last_name: Szep
citation:
ama: Szep E. Local adaptation in metapopulations. 2020. doi:10.15479/AT:ISTA:8574
apa: Szep, E. (2020). Local adaptation in metapopulations. Institute of Science
and Technology Austria. https://doi.org/10.15479/AT:ISTA:8574
chicago: Szep, Eniko. “Local Adaptation in Metapopulations.” Institute of Science
and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:8574.
ieee: E. Szep, “Local adaptation in metapopulations,” Institute of Science and Technology
Austria, 2020.
ista: Szep E. 2020. Local adaptation in metapopulations. Institute of Science and
Technology Austria.
mla: Szep, Eniko. Local Adaptation in Metapopulations. Institute of Science
and Technology Austria, 2020, doi:10.15479/AT:ISTA:8574.
short: E. Szep, Local Adaptation in Metapopulations, Institute of Science and Technology
Austria, 2020.
date_created: 2020-09-28T07:33:38Z
date_published: 2020-09-20T00:00:00Z
date_updated: 2023-09-07T13:11:39Z
day: '20'
ddc:
- '570'
degree_awarded: PhD
department:
- _id: NiBa
doi: 10.15479/AT:ISTA:8574
file:
- access_level: open_access
checksum: 20e71f015fbbd78fea708893ad634ed0
content_type: application/pdf
creator: dernst
date_created: 2020-09-28T07:25:35Z
date_updated: 2020-09-28T07:25:35Z
file_id: '8575'
file_name: thesis_EnikoSzep_final.pdf
file_size: 6354833
relation: main_file
success: 1
- access_level: closed
checksum: a8de2c14a1bb4e53c857787efbb289e1
content_type: application/x-zip-compressed
creator: dernst
date_created: 2020-09-28T07:25:37Z
date_updated: 2020-09-28T07:25:37Z
file_id: '8576'
file_name: thesisFiles_EnikoSzep.zip
file_size: 23020401
relation: source_file
file_date_updated: 2020-09-28T07:25:37Z
has_accepted_license: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: '158'
publication_identifier:
eissn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
status: public
supervisor:
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
title: Local adaptation in metapopulations
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2020'
...
---
_id: '7514'
abstract:
- lang: eng
text: "We study the interacting homogeneous Bose gas in two spatial dimensions in
the thermodynamic limit at fixed density. We shall be concerned with some mathematical
aspects of this complicated problem in many-body quantum mechanics. More specifically,
we consider the dilute limit where the scattering length of the interaction potential,
which is a measure for the effective range of the potential, is small compared
to the average distance between the particles. We are interested in a setting
with positive (i.e., non-zero) temperature. After giving a survey of the relevant
literature in the field, we provide some facts and examples to set expectations
for the two-dimensional system. The crucial difference to the three-dimensional
system is that there is no Bose–Einstein condensate at positive temperature due
to the Hohenberg–Mermin–Wagner theorem. However, it turns out that an asymptotic
formula for the free energy holds similarly to the three-dimensional case.\r\nWe
motivate this formula by considering a toy model with δ interaction potential.
By restricting this model Hamiltonian to certain trial states with a quasi-condensate
we obtain an upper bound for the free energy that still has the quasi-condensate
fraction as a free parameter. When minimizing over the quasi-condensate fraction,
we obtain the Berezinskii–Kosterlitz–Thouless critical temperature for superfluidity,
which plays an important role in our rigorous contribution. The mathematically
rigorous result that we prove concerns the specific free energy in the dilute
limit. We give upper and lower bounds on the free energy in terms of the free
energy of the non-interacting system and a correction term coming from the interaction.
Both bounds match and thus we obtain the leading term of an asymptotic approximation
in the dilute limit, provided the thermal wavelength of the particles is of the
same order (or larger) than the average distance between the particles. The remarkable
feature of this result is its generality: the correction term depends on the interaction
potential only through its scattering length and it holds for all nonnegative
interaction potentials with finite scattering length that are measurable. In particular,
this allows to model an interaction of hard disks."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Simon
full_name: Mayer, Simon
id: 30C4630A-F248-11E8-B48F-1D18A9856A87
last_name: Mayer
citation:
ama: Mayer S. The free energy of a dilute two-dimensional Bose gas. 2020. doi:10.15479/AT:ISTA:7514
apa: Mayer, S. (2020). The free energy of a dilute two-dimensional Bose gas.
Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:7514
chicago: Mayer, Simon. “The Free Energy of a Dilute Two-Dimensional Bose Gas.” Institute
of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:7514.
ieee: S. Mayer, “The free energy of a dilute two-dimensional Bose gas,” Institute
of Science and Technology Austria, 2020.
ista: Mayer S. 2020. The free energy of a dilute two-dimensional Bose gas. Institute
of Science and Technology Austria.
mla: Mayer, Simon. The Free Energy of a Dilute Two-Dimensional Bose Gas.
Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:7514.
short: S. Mayer, The Free Energy of a Dilute Two-Dimensional Bose Gas, Institute
of Science and Technology Austria, 2020.
date_created: 2020-02-24T09:17:27Z
date_published: 2020-02-24T00:00:00Z
date_updated: 2023-09-07T13:12:42Z
day: '24'
ddc:
- '510'
degree_awarded: PhD
department:
- _id: RoSe
- _id: GradSch
doi: 10.15479/AT:ISTA:7514
ec_funded: 1
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language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: '148'
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '694227'
name: Analysis of quantum many-body systems
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '7524'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
title: The free energy of a dilute two-dimensional Bose gas
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2020'
...
---
_id: '8353'
abstract:
- lang: eng
text: "Mrp (Multi resistance and pH adaptation) are broadly distributed secondary
active antiporters that catalyze the transport of monovalent ions such as sodium
and potassium outside of the cell coupled to the inward translocation of protons.
Mrp antiporters are unique in a way that they are composed of seven subunits (MrpABCDEFG)
encoded in a single operon, whereas other antiporters catalyzing the same reaction
are mostly encoded by a single gene. Mrp exchangers are crucial for intracellular
pH homeostasis and Na+ efflux, essential mechanisms for H+ uptake under alkaline
environments and for reduction of the intracellular concentration of toxic cations.
Mrp displays no homology to any other monovalent Na+(K+)/H+ antiporters but Mrp
subunits have primary sequence similarity to essential redox-driven proton pumps,
such as respiratory complex I and membrane-bound hydrogenases. This similarity
reinforces the hypothesis that these present day redox-driven proton pumps are
descended from the Mrp antiporter. The Mrp structure serves as a model to understand
the yet obscure coupling mechanism between ion or electron transfer and proton
translocation in this large group of proteins. In the thesis, I am presenting
the purification, biochemical analysis, cryo-EM analysis and molecular structure
of the Mrp complex from Anoxybacillus flavithermus solved by cryo-EM at 3.0 Å
resolution. Numerous conditions were screened to purify Mrp to high homogeneity
and to obtain an appropriate distribution of single particles on cryo-EM grids
covered with a continuous layer of ultrathin carbon. A preferred particle orientation
problem was solved by performing a tilted data collection. The activity assays
showed the specific pH-dependent\r\nprofile of secondary active antiporters. The
molecular structure shows that Mrp is a dimer of seven-subunit protomers with
50 trans-membrane helices each. The dimer interface is built by many short and
tilted transmembrane helices, probably causing a thinning of the bacterial membrane.
The surface charge distribution shows an extraordinary asymmetry within each monomer,
revealing presumable proton and sodium translocation pathways. The two largest\r\nand
homologous Mrp subunits MrpA and MrpD probably translocate one proton each into
the cell. The sodium ion is likely being translocated in the opposite direction
within the small subunits along a ladder of charged and conserved residues. Based
on the structure, we propose a mechanism were the antiport activity is accomplished
via electrostatic interactions between the charged cations and key charged residues.
The flexible key TM helices coordinate these\r\nelectrostatic interactions, while
the membrane thinning between the monomers enables the translocation of sodium
across the charged membrane. The entire family of redox-driven proton pumps is
likely to perform their mechanism in a likewise manner."
acknowledged_ssus:
- _id: LifeSc
- _id: EM-Fac
- _id: ScienComp
acknowledgement: "I acknowledge the scientific service units of the IST Austria for
providing resources by the Life Science Facility, the Electron Microscopy Facility
and the high-performance computer cluster. Special thanks to the cryo-EM specialists
Valentin Hodirnau and Daniel Johann Gütl for spending many hours with me in front
of the microscope and for supporting me to collect the data presented here. I also
want to thank Professor Masahiro Ito for providing plasmid DNA\r\nencoding Mrp from
Anoxybacillus flavithermus WK1. I am a recipient of a DOC Fellowship of the Austrian
Academy of Sciences."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Julia
full_name: Steiner, Julia
id: 3BB67EB0-F248-11E8-B48F-1D18A9856A87
last_name: Steiner
orcid: 0000-0003-0493-3775
citation:
ama: Steiner J. Biochemical and structural investigation of the Mrp antiporter,
an ancestor of complex I. 2020. doi:10.15479/AT:ISTA:8353
apa: Steiner, J. (2020). Biochemical and structural investigation of the Mrp
antiporter, an ancestor of complex I. Institute of Science and Technology
Austria. https://doi.org/10.15479/AT:ISTA:8353
chicago: Steiner, Julia. “Biochemical and Structural Investigation of the Mrp Antiporter,
an Ancestor of Complex I.” Institute of Science and Technology Austria, 2020.
https://doi.org/10.15479/AT:ISTA:8353.
ieee: J. Steiner, “Biochemical and structural investigation of the Mrp antiporter,
an ancestor of complex I,” Institute of Science and Technology Austria, 2020.
ista: Steiner J. 2020. Biochemical and structural investigation of the Mrp antiporter,
an ancestor of complex I. Institute of Science and Technology Austria.
mla: Steiner, Julia. Biochemical and Structural Investigation of the Mrp Antiporter,
an Ancestor of Complex I. Institute of Science and Technology Austria, 2020,
doi:10.15479/AT:ISTA:8353.
short: J. Steiner, Biochemical and Structural Investigation of the Mrp Antiporter,
an Ancestor of Complex I, Institute of Science and Technology Austria, 2020.
date_created: 2020-09-09T14:27:01Z
date_published: 2020-09-09T00:00:00Z
date_updated: 2023-09-07T13:14:09Z
day: '09'
ddc:
- '572'
degree_awarded: PhD
department:
- _id: LeSa
doi: 10.15479/AT:ISTA:8353
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language:
- iso: eng
month: '09'
oa: 1
oa_version: None
page: '191'
project:
- _id: 26169496-B435-11E9-9278-68D0E5697425
grant_number: '24741'
name: Revealing the functional mechanism of Mrp antiporter, an ancestor of complex
I
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '8284'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Leonid A
full_name: Sazanov, Leonid A
id: 338D39FE-F248-11E8-B48F-1D18A9856A87
last_name: Sazanov
orcid: 0000-0002-0977-7989
title: Biochemical and structural investigation of the Mrp antiporter, an ancestor
of complex I
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2020'
...
---
_id: '8589'
abstract:
- lang: eng
text: The plant hormone auxin plays indispensable roles in plant growth and development.
An essential level of regulation in auxin action is the directional auxin transport
within cells. The establishment of auxin gradient in plant tissue has been attributed
to local auxin biosynthesis and directional intercellular auxin transport, which
both are controlled by various environmental and developmental signals. It is
well established that asymmetric auxin distribution in cells is achieved by polarly
localized PIN-FORMED (PIN) auxin efflux transporters. Despite the initial insights
into cellular mechanisms of PIN polarization obtained from the last decades, the
molecular mechanism and specific regulators mediating PIN polarization remains
elusive. In this thesis, we aim to find novel players in PIN subcellular polarity
regulation during Arabidopsis development. We first characterize the physiological
effect of piperonylic acid (PA) on Arabidopsis hypocotyl gravitropic bending and
PIN polarization. Secondly, we reveal the importance of SCFTIR1/AFB auxin signaling
pathway in shoot gravitropism bending termination. In addition, we also explore
the role of myosin XI complex, and actin cytoskeleton in auxin feedback regulation
on PIN polarity. In Chapter 1, we give an overview of the current knowledge about
PIN-mediated auxin fluxes in various plant tropic responses. In Chapter 2, we
study the physiological effect of PA on shoot gravitropic bending. Our results
show that PA treatment inhibits auxin-mediated PIN3 repolarization by interfering
with PINOID and PIN3 phosphorylation status, ultimately leading to hyperbending
hypocotyls. In Chapter 3, we provide evidence to show that the SCFTIR1/AFB nuclear
auxin signaling pathway is crucial and required for auxin-mediated PIN3 repolarization
and shoot gravitropic bending termination. In Chapter 4, we perform a phosphoproteomics
approach and identify the motor protein Myosin XI and its binding protein, the
MadB2 family, as an essential regulator of PIN polarity for auxin-canalization
related developmental processes. In Chapter 5, we demonstrate the vital role of
actin cytoskeleton in auxin feedback on PIN polarity by regulating PIN subcellular
trafficking. Overall, the data presented in this PhD thesis brings novel insights
into the PIN polar localization regulation that resulted in the (re)establishment
of the polar auxin flow and gradient in response to environmental stimuli during
plant development.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
acknowledgement: I also want to thank the China Scholarship Council for supporting
my study during the year from 2015 to 2019. I also want to thank IST facilities
– the Bioimaging facility, the media kitchen, the plant facility and all of the
campus services, for their support.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Huibin
full_name: Han, Huibin
id: 31435098-F248-11E8-B48F-1D18A9856A87
last_name: Han
citation:
ama: Han H. Novel insights into PIN polarity regulation during Arabidopsis development.
2020. doi:10.15479/AT:ISTA:8589
apa: Han, H. (2020). Novel insights into PIN polarity regulation during Arabidopsis
development. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:8589
chicago: Han, Huibin. “Novel Insights into PIN Polarity Regulation during Arabidopsis
Development.” Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:8589.
ieee: H. Han, “Novel insights into PIN polarity regulation during Arabidopsis development,”
Institute of Science and Technology Austria, 2020.
ista: Han H. 2020. Novel insights into PIN polarity regulation during Arabidopsis
development. Institute of Science and Technology Austria.
mla: Han, Huibin. Novel Insights into PIN Polarity Regulation during Arabidopsis
Development. Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:8589.
short: H. Han, Novel Insights into PIN Polarity Regulation during Arabidopsis Development,
Institute of Science and Technology Austria, 2020.
date_created: 2020-09-30T14:50:51Z
date_published: 2020-09-30T00:00:00Z
date_updated: 2023-09-07T13:13:05Z
day: '30'
ddc:
- '580'
degree_awarded: PhD
department:
- _id: JiFr
doi: 10.15479/AT:ISTA:8589
file:
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checksum: c4bda1947d4c09c428ac9ce667b02327
content_type: application/vnd.openxmlformats-officedocument.wordprocessingml.document
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file_id: '8590'
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file_size: 49198118
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content_type: application/pdf
creator: dernst
date_created: 2020-09-30T14:49:59Z
date_updated: 2021-10-01T13:33:02Z
file_id: '8591'
file_name: 2020_Han_Thesis.pdf
file_size: 15513963
relation: main_file
file_date_updated: 2021-10-01T13:33:02Z
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language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: '164'
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '7643'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
title: Novel insights into PIN polarity regulation during Arabidopsis development
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2020'
...
---
_id: '8284'
abstract:
- lang: eng
text: Multiple resistance and pH adaptation (Mrp) antiporters are multi-subunit
Na+ (or K+)/H+ exchangers representing an ancestor of many essential redox-driven
proton pumps, such as respiratory complex I. The mechanism of coupling between
ion or electron transfer and proton translocation in this large protein family
is unknown. Here, we present the structure of the Mrp complex from Anoxybacillus
flavithermus solved by cryo-EM at 3.0 Å resolution. It is a dimer of seven-subunit
protomers with 50 trans-membrane helices each. Surface charge distribution within
each monomer is remarkably asymmetric, revealing probable proton and sodium translocation
pathways. On the basis of the structure we propose a mechanism where the coupling
between sodium and proton translocation is facilitated by a series of electrostatic
interactions between a cation and key charged residues. This mechanism is likely
to be applicable to the entire family of redox proton pumps, where electron transfer
to substrates replaces cation movements.
acknowledged_ssus:
- _id: EM-Fac
- _id: LifeSc
acknowledgement: This research was supported by the Scientific Service Units (SSU)
of IST Austria through resources provided by the Electron Microscopy Facility (EMF),
the Life Science Facility (LSF) and the IST high-performance computing cluster.
We thank Dr Victor-Valentin Hodirnau and Daniel Johann Gütl from IST Austria for
assistance with collecting cryo-EM data. We thank Prof. Masahiro Ito (Graduate School
of Life Sciences, Toyo University, Japan) for a kind provision of plasmid DNA encoding
Mrp from A. flavithermus WK1. JS is a recipient of a DOC Fellowship of the Austrian
Academy of Sciences at the Institute of Science and Technology, Austria.
article_number: e59407
article_processing_charge: No
article_type: original
author:
- first_name: Julia
full_name: Steiner, Julia
id: 3BB67EB0-F248-11E8-B48F-1D18A9856A87
last_name: Steiner
orcid: 0000-0003-0493-3775
- first_name: Leonid A
full_name: Sazanov, Leonid A
id: 338D39FE-F248-11E8-B48F-1D18A9856A87
last_name: Sazanov
orcid: 0000-0002-0977-7989
citation:
ama: Steiner J, Sazanov LA. Structure and mechanism of the Mrp complex, an ancient
cation/proton antiporter. eLife. 2020;9. doi:10.7554/eLife.59407
apa: Steiner, J., & Sazanov, L. A. (2020). Structure and mechanism of the Mrp
complex, an ancient cation/proton antiporter. ELife. eLife Sciences Publications.
https://doi.org/10.7554/eLife.59407
chicago: Steiner, Julia, and Leonid A Sazanov. “Structure and Mechanism of the Mrp
Complex, an Ancient Cation/Proton Antiporter.” ELife. eLife Sciences Publications,
2020. https://doi.org/10.7554/eLife.59407.
ieee: J. Steiner and L. A. Sazanov, “Structure and mechanism of the Mrp complex,
an ancient cation/proton antiporter,” eLife, vol. 9. eLife Sciences Publications,
2020.
ista: Steiner J, Sazanov LA. 2020. Structure and mechanism of the Mrp complex, an
ancient cation/proton antiporter. eLife. 9, e59407.
mla: Steiner, Julia, and Leonid A. Sazanov. “Structure and Mechanism of the Mrp
Complex, an Ancient Cation/Proton Antiporter.” ELife, vol. 9, e59407, eLife
Sciences Publications, 2020, doi:10.7554/eLife.59407.
short: J. Steiner, L.A. Sazanov, ELife 9 (2020).
date_created: 2020-08-24T06:24:04Z
date_published: 2020-07-31T00:00:00Z
date_updated: 2023-09-07T13:14:08Z
day: '31'
ddc:
- '570'
department:
- _id: LeSa
doi: 10.7554/eLife.59407
external_id:
isi:
- '000562123600001'
pmid:
- '32735215'
file:
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file_name: 2020_eLife_Steiner.pdf
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intvolume: ' 9'
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month: '07'
oa: 1
oa_version: Published Version
pmid: 1
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grant_number: '24741'
name: Revealing the functional mechanism of Mrp antiporter, an ancestor of complex
I
publication: eLife
publication_identifier:
eissn:
- 2050084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
related_material:
link:
- description: News on IST Homepage
relation: press_release
url: https://ist.ac.at/en/news/mystery-of-giant-proton-pump-solved/
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title: Structure and mechanism of the Mrp complex, an ancient cation/proton antiporter
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 9
year: '2020'
...
---
_id: '8155'
abstract:
- lang: eng
text: "In the thesis we focus on the interplay of the biophysics and evolution of
gene regulation. We start by addressing how the type of prokaryotic gene regulation
– activation and repression – affects spurious binding to DNA, also known as\r\ntranscriptional
crosstalk. We propose that regulatory interference caused by excess regulatory
proteins in the dense cellular medium – global crosstalk – could be a factor in
determining which type of gene regulatory network is evolutionarily preferred.
Next,we use a normative approach in eukaryotic gene regulation to describe minimal\r\nnon-equilibrium
enhancer models that optimize so-called regulatory phenotypes. We find a class
of models that differ from standard thermodynamic equilibrium models by a single
parameter that notably increases the regulatory performance. Next chapter addresses
the question of genotype-phenotype-fitness maps of higher dimensional phenotypes.
We show that our biophysically realistic approach allows us to understand how
the mechanisms of promoter function constrain genotypephenotype maps, and how
they affect the evolutionary trajectories of promoters.\r\nIn the last chapter
we ask whether the intrinsic instability of gene duplication and amplification
provides a generic alternative to canonical gene regulation. Using mathematical
modeling, we show that amplifications can tune gene expression in many environments,
including those where transcription factor-based schemes are\r\nhard to evolve
or maintain. "
acknowledgement: For the duration of his PhD, Rok was a recipient of a DOC fellowship
of the Austrian Academy of Sciences.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Rok
full_name: Grah, Rok
id: 483E70DE-F248-11E8-B48F-1D18A9856A87
last_name: Grah
orcid: 0000-0003-2539-3560
citation:
ama: Grah R. Gene regulation across scales – how biophysical constraints shape evolution.
2020. doi:10.15479/AT:ISTA:8155
apa: Grah, R. (2020). Gene regulation across scales – how biophysical constraints
shape evolution. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:8155
chicago: Grah, Rok. “Gene Regulation across Scales – How Biophysical Constraints
Shape Evolution.” Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:8155.
ieee: R. Grah, “Gene regulation across scales – how biophysical constraints shape
evolution,” Institute of Science and Technology Austria, 2020.
ista: Grah R. 2020. Gene regulation across scales – how biophysical constraints
shape evolution. Institute of Science and Technology Austria.
mla: Grah, Rok. Gene Regulation across Scales – How Biophysical Constraints Shape
Evolution. Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:8155.
short: R. Grah, Gene Regulation across Scales – How Biophysical Constraints Shape
Evolution, Institute of Science and Technology Austria, 2020.
date_created: 2020-07-23T09:51:28Z
date_published: 2020-07-24T00:00:00Z
date_updated: 2023-09-07T13:13:27Z
day: '24'
ddc:
- '530'
- '570'
degree_awarded: PhD
department:
- _id: CaGu
- _id: GaTk
doi: 10.15479/AT:ISTA:8155
file:
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content_type: application/pdf
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creator: rgrah
date_created: 2020-07-27T12:02:23Z
date_updated: 2020-07-30T13:04:55Z
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file_date_updated: 2020-07-30T13:04:55Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '310'
project:
- _id: 267C84F4-B435-11E9-9278-68D0E5697425
name: Biophysically realistic genotype-phenotype maps for regulatory networks
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
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status: public
- id: '7569'
relation: part_of_dissertation
status: public
- id: '7652'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Calin C
full_name: Guet, Calin C
id: 47F8433E-F248-11E8-B48F-1D18A9856A87
last_name: Guet
orcid: 0000-0001-6220-2052
- first_name: Gašper
full_name: Tkačik, Gašper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkačik
orcid: 0000-0002-6699-1455
title: Gene regulation across scales – how biophysical constraints shape evolution
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2020'
...
---
_id: '7643'
acknowledgement: 'This work was supported by the European Research Council under the
European Union’s Horizon 2020 research and innovation Programme (ERC grant agreement
number 742985), and the Austrian Science Fund (FWF, grant number I 3630-B25) to
JF. HH is supported by the China Scholarship Council (CSC scholarship). '
article_processing_charge: No
article_type: letter_note
author:
- first_name: Huibin
full_name: Han, Huibin
id: 31435098-F248-11E8-B48F-1D18A9856A87
last_name: Han
- first_name: Hana
full_name: Rakusova, Hana
id: 4CAAA450-78D2-11EA-8E57-B40A396E08BA
last_name: Rakusova
- first_name: Inge
full_name: Verstraeten, Inge
id: 362BF7FE-F248-11E8-B48F-1D18A9856A87
last_name: Verstraeten
orcid: 0000-0001-7241-2328
- first_name: Yuzhou
full_name: Zhang, Yuzhou
id: 3B6137F2-F248-11E8-B48F-1D18A9856A87
last_name: Zhang
orcid: 0000-0003-2627-6956
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Han H, Rakusova H, Verstraeten I, Zhang Y, Friml J. SCF TIR1/AFB auxin signaling
for bending termination during shoot gravitropism. Plant Physiology. 2020;183(5):37-40.
doi:10.1104/pp.20.00212
apa: Han, H., Rakusova, H., Verstraeten, I., Zhang, Y., & Friml, J. (2020).
SCF TIR1/AFB auxin signaling for bending termination during shoot gravitropism.
Plant Physiology. American Society of Plant Biologists. https://doi.org/10.1104/pp.20.00212
chicago: Han, Huibin, Hana Rakusova, Inge Verstraeten, Yuzhou Zhang, and Jiří Friml.
“SCF TIR1/AFB Auxin Signaling for Bending Termination during Shoot Gravitropism.”
Plant Physiology. American Society of Plant Biologists, 2020. https://doi.org/10.1104/pp.20.00212.
ieee: H. Han, H. Rakusova, I. Verstraeten, Y. Zhang, and J. Friml, “SCF TIR1/AFB
auxin signaling for bending termination during shoot gravitropism,” Plant Physiology,
vol. 183, no. 5. American Society of Plant Biologists, pp. 37–40, 2020.
ista: Han H, Rakusova H, Verstraeten I, Zhang Y, Friml J. 2020. SCF TIR1/AFB auxin
signaling for bending termination during shoot gravitropism. Plant Physiology.
183(5), 37–40.
mla: Han, Huibin, et al. “SCF TIR1/AFB Auxin Signaling for Bending Termination during
Shoot Gravitropism.” Plant Physiology, vol. 183, no. 5, American Society
of Plant Biologists, 2020, pp. 37–40, doi:10.1104/pp.20.00212.
short: H. Han, H. Rakusova, I. Verstraeten, Y. Zhang, J. Friml, Plant Physiology
183 (2020) 37–40.
date_created: 2020-04-06T10:06:40Z
date_published: 2020-05-08T00:00:00Z
date_updated: 2023-09-07T13:13:04Z
day: '08'
department:
- _id: JiFr
doi: 10.1104/pp.20.00212
ec_funded: 1
external_id:
isi:
- '000536641800018'
pmid:
- '32107280'
intvolume: ' 183'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1104/pp.20.00212
month: '05'
oa: 1
oa_version: Published Version
page: 37-40
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '742985'
name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I03630
name: Molecular mechanisms of endocytic cargo recognition in plants
publication: Plant Physiology
publication_identifier:
eissn:
- 1532-2548
issn:
- 0032-0889
publication_status: published
publisher: American Society of Plant Biologists
quality_controlled: '1'
related_material:
record:
- id: '8589'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: SCF TIR1/AFB auxin signaling for bending termination during shoot gravitropism
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 183
year: '2020'
...
---
_id: '7675'
abstract:
- lang: eng
text: 'In prokaryotes, thermodynamic models of gene regulation provide a highly
quantitative mapping from promoter sequences to gene expression levels that is
compatible with in vivo and in vitro bio-physical measurements. Such concordance
has not been achieved for models of enhancer function in eukaryotes. In equilibrium
models, it is difficult to reconcile the reported short transcription factor (TF)
residence times on the DNA with the high specificity of regulation. In non-equilibrium
models, progress is difficult due to an explosion in the number of parameters.
Here, we navigate this complexity by looking for minimal non-equilibrium enhancer
models that yield desired regulatory phenotypes: low TF residence time, high specificity
and tunable cooperativity. We find that a single extra parameter, interpretable
as the “linking rate” by which bound TFs interact with Mediator components, enables
our models to escape equilibrium bounds and access optimal regulatory phenotypes,
while remaining consistent with the reported phenomenology and simple enough to
be inferred from upcoming experiments. We further find that high specificity in
non-equilibrium models is in a tradeoff with gene expression noise, predicting
bursty dynamics — an experimentally-observed hallmark of eukaryotic transcription.
By drastically reducing the vast parameter space to a much smaller subspace that
optimally realizes biological function prior to inference from data, our normative
approach holds promise for mathematical models in systems biology.'
article_processing_charge: No
author:
- first_name: Rok
full_name: Grah, Rok
id: 483E70DE-F248-11E8-B48F-1D18A9856A87
last_name: Grah
orcid: 0000-0003-2539-3560
- first_name: Benjamin
full_name: Zoller, Benjamin
last_name: Zoller
- first_name: Gašper
full_name: Tkačik, Gašper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkačik
orcid: 0000-0002-6699-1455
citation:
ama: Grah R, Zoller B, Tkačik G. Normative models of enhancer function. bioRxiv.
2020. doi:10.1101/2020.04.08.029405
apa: Grah, R., Zoller, B., & Tkačik, G. (2020). Normative models of enhancer
function. bioRxiv. Cold Spring Harbor Laboratory. https://doi.org/10.1101/2020.04.08.029405
chicago: Grah, Rok, Benjamin Zoller, and Gašper Tkačik. “Normative Models of Enhancer
Function.” BioRxiv. Cold Spring Harbor Laboratory, 2020. https://doi.org/10.1101/2020.04.08.029405.
ieee: R. Grah, B. Zoller, and G. Tkačik, “Normative models of enhancer function,”
bioRxiv. Cold Spring Harbor Laboratory, 2020.
ista: Grah R, Zoller B, Tkačik G. 2020. Normative models of enhancer function. bioRxiv,
10.1101/2020.04.08.029405.
mla: Grah, Rok, et al. “Normative Models of Enhancer Function.” BioRxiv,
Cold Spring Harbor Laboratory, 2020, doi:10.1101/2020.04.08.029405.
short: R. Grah, B. Zoller, G. Tkačik, BioRxiv (2020).
date_created: 2020-04-23T10:12:51Z
date_published: 2020-04-09T00:00:00Z
date_updated: 2023-09-07T13:13:26Z
day: '09'
department:
- _id: CaGu
- _id: GaTk
doi: 10.1101/2020.04.08.029405
language:
- iso: eng
main_file_link:
- open_access: '1'
url: 'https://doi.org/10.1101/2020.04.08.029405 '
month: '04'
oa: 1
oa_version: Preprint
project:
- _id: 2665AAFE-B435-11E9-9278-68D0E5697425
grant_number: RGP0034/2018
name: Can evolution minimize spurious signaling crosstalk to reach optimal performance?
- _id: 267C84F4-B435-11E9-9278-68D0E5697425
name: Biophysically realistic genotype-phenotype maps for regulatory networks
publication: bioRxiv
publication_status: published
publisher: Cold Spring Harbor Laboratory
related_material:
record:
- id: '8155'
relation: dissertation_contains
status: public
status: public
title: Normative models of enhancer function
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7460'
abstract:
- lang: eng
text: "Many methods for the reconstruction of shapes from sets of points produce
ordered simplicial complexes, which are collections of vertices, edges, triangles,
and their higher-dimensional analogues, called simplices, in which every simplex
gets assigned a real value measuring its size. This thesis studies ordered simplicial
complexes, with a focus on their topology, which reflects the connectedness of
the represented shapes and the presence of holes. We are interested both in understanding
better the structure of these complexes, as well as in developing algorithms for
applications.\r\n\r\nFor the Delaunay triangulation, the most popular measure
for a simplex is the radius of the smallest empty circumsphere. Based on it, we
revisit Alpha and Wrap complexes and experimentally determine their probabilistic
properties for random data. Also, we prove the existence of tri-partitions, propose
algorithms to open and close holes, and extend the concepts from Euclidean to
Bregman geometries."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Katharina
full_name: Ölsböck, Katharina
id: 4D4AA390-F248-11E8-B48F-1D18A9856A87
last_name: Ölsböck
orcid: 0000-0002-4672-8297
citation:
ama: Ölsböck K. The hole system of triangulated shapes. 2020. doi:10.15479/AT:ISTA:7460
apa: Ölsböck, K. (2020). The hole system of triangulated shapes. Institute
of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:7460
chicago: Ölsböck, Katharina. “The Hole System of Triangulated Shapes.” Institute
of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:7460.
ieee: K. Ölsböck, “The hole system of triangulated shapes,” Institute of Science
and Technology Austria, 2020.
ista: Ölsböck K. 2020. The hole system of triangulated shapes. Institute of Science
and Technology Austria.
mla: Ölsböck, Katharina. The Hole System of Triangulated Shapes. Institute
of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:7460.
short: K. Ölsböck, The Hole System of Triangulated Shapes, Institute of Science
and Technology Austria, 2020.
date_created: 2020-02-06T14:56:53Z
date_published: 2020-02-10T00:00:00Z
date_updated: 2023-09-07T13:15:30Z
day: '10'
ddc:
- '514'
degree_awarded: PhD
department:
- _id: HeEd
- _id: GradSch
doi: 10.15479/AT:ISTA:7460
file:
- access_level: open_access
checksum: 1df9f8c530b443c0e63a3f2e4fde412e
content_type: application/pdf
creator: koelsboe
date_created: 2020-02-06T14:43:54Z
date_updated: 2020-07-14T12:47:58Z
file_id: '7461'
file_name: thesis_ist-final_noack.pdf
file_size: 76195184
relation: main_file
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checksum: 7a52383c812b0be64d3826546509e5a4
content_type: application/x-zip-compressed
creator: koelsboe
date_created: 2020-02-06T14:52:45Z
date_updated: 2020-07-14T12:47:58Z
description: latex source files, figures
file_id: '7462'
file_name: latex-files.zip
file_size: 122103715
relation: source_file
file_date_updated: 2020-07-14T12:47:58Z
has_accepted_license: '1'
keyword:
- shape reconstruction
- hole manipulation
- ordered complexes
- Alpha complex
- Wrap complex
- computational topology
- Bregman geometry
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '02'
oa: 1
oa_version: Published Version
page: '155'
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '6608'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
title: The hole system of triangulated shapes
tmp:
image: /images/cc_by_nc_sa.png
legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
BY-NC-SA 4.0)
short: CC BY-NC-SA (4.0)
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2020'
...
---
_id: '7896'
abstract:
- lang: eng
text: "A search problem lies in the complexity class FNP if a solution to the given
instance of the problem can be verified efficiently. The complexity class TFNP
consists of all search problems in FNP that are total in the sense that a solution
is guaranteed to exist. TFNP contains a host of interesting problems from fields
such as algorithmic game theory, computational topology, number theory and combinatorics.
Since TFNP is a semantic class, it is unlikely to have a complete problem. Instead,
one studies its syntactic subclasses which are defined based on the combinatorial
principle used to argue totality. Of particular interest is the subclass PPAD,
which contains important problems\r\nlike computing Nash equilibrium for bimatrix
games and computational counterparts of several fixed-point theorems as complete.
In the thesis, we undertake the study of averagecase hardness of TFNP, and in
particular its subclass PPAD.\r\nAlmost nothing was known about average-case hardness
of PPAD before a series of recent results showed how to achieve it using a cryptographic
primitive called program obfuscation.\r\nHowever, it is currently not known how
to construct program obfuscation from standard cryptographic assumptions. Therefore,
it is desirable to relax the assumption under which average-case hardness of PPAD
can be shown. In the thesis we take a step in this direction. First, we show that
assuming the (average-case) hardness of a numbertheoretic\r\nproblem related to
factoring of integers, which we call Iterated-Squaring, PPAD is hard-on-average
in the random-oracle model. Then we strengthen this result to show that the average-case
hardness of PPAD reduces to the (adaptive) soundness of the Fiat-Shamir Transform,
a well-known technique used to compile a public-coin interactive protocol into
a non-interactive one. As a corollary, we obtain average-case hardness for PPAD
in the random-oracle model assuming the worst-case hardness of #SAT. Moreover,
the above results can all be strengthened to obtain average-case hardness for
the class CLS ⊆ PPAD.\r\nOur main technical contribution is constructing incrementally-verifiable
procedures for computing Iterated-Squaring and #SAT. By incrementally-verifiable,
we mean that every intermediate state of the computation includes a proof of its
correctness, and the proof can be updated and verified in polynomial time. Previous
constructions of such procedures relied on strong, non-standard assumptions. Instead,
we introduce a technique called recursive proof-merging to obtain the same from
weaker assumptions. "
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Chethan
full_name: Kamath Hosdurg, Chethan
id: 4BD3F30E-F248-11E8-B48F-1D18A9856A87
last_name: Kamath Hosdurg
citation:
ama: Kamath Hosdurg C. On the average-case hardness of total search problems. 2020.
doi:10.15479/AT:ISTA:7896
apa: Kamath Hosdurg, C. (2020). On the average-case hardness of total search
problems. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:7896
chicago: Kamath Hosdurg, Chethan. “On the Average-Case Hardness of Total Search
Problems.” Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:7896.
ieee: C. Kamath Hosdurg, “On the average-case hardness of total search problems,”
Institute of Science and Technology Austria, 2020.
ista: Kamath Hosdurg C. 2020. On the average-case hardness of total search problems.
Institute of Science and Technology Austria.
mla: Kamath Hosdurg, Chethan. On the Average-Case Hardness of Total Search Problems.
Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:7896.
short: C. Kamath Hosdurg, On the Average-Case Hardness of Total Search Problems,
Institute of Science and Technology Austria, 2020.
date_created: 2020-05-26T14:08:55Z
date_published: 2020-05-25T00:00:00Z
date_updated: 2023-09-07T13:15:55Z
day: '25'
ddc:
- '000'
degree_awarded: PhD
department:
- _id: KrPi
doi: 10.15479/AT:ISTA:7896
ec_funded: 1
file:
- access_level: open_access
checksum: b39e2e1c376f5819b823fb7077491c64
content_type: application/pdf
creator: dernst
date_created: 2020-05-26T14:08:13Z
date_updated: 2020-07-14T12:48:04Z
file_id: '7897'
file_name: 2020_Thesis_Kamath.pdf
file_size: 1622742
relation: main_file
- access_level: closed
checksum: 8b26ba729c1a85ac6bea775f5d73cdc7
content_type: application/x-zip-compressed
creator: dernst
date_created: 2020-05-26T14:08:23Z
date_updated: 2020-07-14T12:48:04Z
file_id: '7898'
file_name: Thesis_Kamath.zip
file_size: 15301529
relation: source_file
file_date_updated: 2020-07-14T12:48:04Z
has_accepted_license: '1'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: '126'
project:
- _id: 258C570E-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '259668'
name: Provable Security for Physical Cryptography
- _id: 258AA5B2-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '682815'
name: Teaching Old Crypto New Tricks
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '6677'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Krzysztof Z
full_name: Pietrzak, Krzysztof Z
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
title: On the average-case hardness of total search problems
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2020'
...
---
_id: '7936'
abstract:
- lang: eng
text: 'State-of-the-art detection systems are generally evaluated on their ability
to exhaustively retrieve objects densely distributed in the image, across a wide
variety of appearances and semantic categories. Orthogonal to this, many real-life
object detection applications, for example in remote sensing, instead require
dealing with large images that contain only a few small objects of a single class,
scattered heterogeneously across the space. In addition, they are often subject
to strict computational constraints, such as limited battery capacity and computing
power.To tackle these more practical scenarios, we propose a novel flexible detection
scheme that efficiently adapts to variable object sizes and densities: We rely
on a sequence of detection stages, each of which has the ability to predict groups
of objects as well as individuals. Similar to a detection cascade, this multi-stage
architecture spares computational effort by discarding large irrelevant regions
of the image early during the detection process. The ability to group objects
provides further computational and memory savings, as it allows working with lower
image resolutions in early stages, where groups are more easily detected than
individuals, as they are more salient. We report experimental results on two aerial
image datasets, and show that the proposed method is as accurate yet computationally
more efficient than standard single-shot detectors, consistently across three
different backbone architectures.'
article_number: 1716-1725
article_processing_charge: No
author:
- first_name: Amélie
full_name: Royer, Amélie
id: 3811D890-F248-11E8-B48F-1D18A9856A87
last_name: Royer
orcid: 0000-0002-8407-0705
- first_name: Christoph
full_name: Lampert, Christoph
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
citation:
ama: 'Royer A, Lampert C. Localizing grouped instances for efficient detection in
low-resource scenarios. In: IEEE Winter Conference on Applications of Computer
Vision. IEEE; 2020. doi:10.1109/WACV45572.2020.9093288'
apa: 'Royer, A., & Lampert, C. (2020). Localizing grouped instances for efficient
detection in low-resource scenarios. In IEEE Winter Conference on Applications
of Computer Vision. Snowmass Village, CO, United States: IEEE. https://doi.org/10.1109/WACV45572.2020.9093288'
chicago: Royer, Amélie, and Christoph Lampert. “Localizing Grouped Instances for
Efficient Detection in Low-Resource Scenarios.” In IEEE Winter Conference on
Applications of Computer Vision. IEEE, 2020. https://doi.org/10.1109/WACV45572.2020.9093288.
ieee: A. Royer and C. Lampert, “Localizing grouped instances for efficient detection
in low-resource scenarios,” in IEEE Winter Conference on Applications of Computer
Vision, Snowmass Village, CO, United States, 2020.
ista: 'Royer A, Lampert C. 2020. Localizing grouped instances for efficient detection
in low-resource scenarios. IEEE Winter Conference on Applications of Computer
Vision. WACV: Winter Conference on Applications of Computer Vision, 1716–1725.'
mla: Royer, Amélie, and Christoph Lampert. “Localizing Grouped Instances for Efficient
Detection in Low-Resource Scenarios.” IEEE Winter Conference on Applications
of Computer Vision, 1716–1725, IEEE, 2020, doi:10.1109/WACV45572.2020.9093288.
short: A. Royer, C. Lampert, in:, IEEE Winter Conference on Applications of Computer
Vision, IEEE, 2020.
conference:
end_date: 2020-03-05
location: ' Snowmass Village, CO, United States'
name: 'WACV: Winter Conference on Applications of Computer Vision'
start_date: 2020-03-01
date_created: 2020-06-07T22:00:53Z
date_published: 2020-03-01T00:00:00Z
date_updated: 2023-09-07T13:16:17Z
day: '01'
department:
- _id: ChLa
doi: 10.1109/WACV45572.2020.9093288
external_id:
arxiv:
- '2004.12623'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2004.12623
month: '03'
oa: 1
oa_version: Preprint
publication: IEEE Winter Conference on Applications of Computer Vision
publication_identifier:
isbn:
- '9781728165530'
publication_status: published
publisher: IEEE
quality_controlled: '1'
related_material:
record:
- id: '8331'
relation: dissertation_contains
status: deleted
- id: '8390'
relation: dissertation_contains
status: public
scopus_import: 1
status: public
title: Localizing grouped instances for efficient detection in low-resource scenarios
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7937'
abstract:
- lang: eng
text: 'Fine-tuning is a popular way of exploiting knowledge contained in a pre-trained
convolutional network for a new visual recognition task. However, the orthogonal
setting of transferring knowledge from a pretrained network to a visually different
yet semantically close source is rarely considered: This commonly happens with
real-life data, which is not necessarily as clean as the training source (noise,
geometric transformations, different modalities, etc.).To tackle such scenarios,
we introduce a new, generalized form of fine-tuning, called flex-tuning, in which
any individual unit (e.g. layer) of a network can be tuned, and the most promising
one is chosen automatically. In order to make the method appealing for practical
use, we propose two lightweight and faster selection procedures that prove to
be good approximations in practice. We study these selection criteria empirically
across a variety of domain shifts and data scarcity scenarios, and show that fine-tuning
individual units, despite its simplicity, yields very good results as an adaptation
technique. As it turns out, in contrast to common practice, rather than the last
fully-connected unit it is best to tune an intermediate or early one in many domain-
shift scenarios, which is accurately detected by flex-tuning.'
article_number: 2180-2189
article_processing_charge: No
author:
- first_name: Amélie
full_name: Royer, Amélie
id: 3811D890-F248-11E8-B48F-1D18A9856A87
last_name: Royer
orcid: 0000-0002-8407-0705
- first_name: Christoph
full_name: Lampert, Christoph
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
citation:
ama: 'Royer A, Lampert C. A flexible selection scheme for minimum-effort transfer
learning. In: 2020 IEEE Winter Conference on Applications of Computer Vision.
IEEE; 2020. doi:10.1109/WACV45572.2020.9093635'
apa: 'Royer, A., & Lampert, C. (2020). A flexible selection scheme for minimum-effort
transfer learning. In 2020 IEEE Winter Conference on Applications of Computer
Vision. Snowmass Village, CO, United States: IEEE. https://doi.org/10.1109/WACV45572.2020.9093635'
chicago: Royer, Amélie, and Christoph Lampert. “A Flexible Selection Scheme for
Minimum-Effort Transfer Learning.” In 2020 IEEE Winter Conference on Applications
of Computer Vision. IEEE, 2020. https://doi.org/10.1109/WACV45572.2020.9093635.
ieee: A. Royer and C. Lampert, “A flexible selection scheme for minimum-effort transfer
learning,” in 2020 IEEE Winter Conference on Applications of Computer Vision,
Snowmass Village, CO, United States, 2020.
ista: 'Royer A, Lampert C. 2020. A flexible selection scheme for minimum-effort
transfer learning. 2020 IEEE Winter Conference on Applications of Computer Vision.
WACV: Winter Conference on Applications of Computer Vision, 2180–2189.'
mla: Royer, Amélie, and Christoph Lampert. “A Flexible Selection Scheme for Minimum-Effort
Transfer Learning.” 2020 IEEE Winter Conference on Applications of Computer
Vision, 2180–2189, IEEE, 2020, doi:10.1109/WACV45572.2020.9093635.
short: A. Royer, C. Lampert, in:, 2020 IEEE Winter Conference on Applications of
Computer Vision, IEEE, 2020.
conference:
end_date: 2020-03-05
location: Snowmass Village, CO, United States
name: 'WACV: Winter Conference on Applications of Computer Vision'
start_date: 2020-03-01
date_created: 2020-06-07T22:00:53Z
date_published: 2020-03-01T00:00:00Z
date_updated: 2023-09-07T13:16:17Z
day: '01'
department:
- _id: ChLa
doi: 10.1109/WACV45572.2020.9093635
external_id:
arxiv:
- '2008.11995'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://arxiv.org/abs/2008.11995
month: '03'
oa: 1
oa_version: Preprint
publication: 2020 IEEE Winter Conference on Applications of Computer Vision
publication_identifier:
isbn:
- '9781728165530'
publication_status: published
publisher: IEEE
quality_controlled: '1'
related_material:
record:
- id: '8331'
relation: dissertation_contains
status: deleted
- id: '8390'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: A flexible selection scheme for minimum-effort transfer learning
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '8092'
abstract:
- lang: eng
text: Image translation refers to the task of mapping images from a visual domain
to another. Given two unpaired collections of images, we aim to learn a mapping
between the corpus-level style of each collection, while preserving semantic content
shared across the two domains. We introduce xgan, a dual adversarial auto-encoder,
which captures a shared representation of the common domain semantic content in
an unsupervised way, while jointly learning the domain-to-domain image translations
in both directions. We exploit ideas from the domain adaptation literature and
define a semantic consistency loss which encourages the learned embedding to preserve
semantics shared across domains. We report promising qualitative results for the
task of face-to-cartoon translation. The cartoon dataset we collected for this
purpose, “CartoonSet”, is also publicly available as a new benchmark for semantic
style transfer at https://google.github.io/cartoonset/index.html.
article_processing_charge: No
author:
- first_name: Amélie
full_name: Royer, Amélie
id: 3811D890-F248-11E8-B48F-1D18A9856A87
last_name: Royer
orcid: 0000-0002-8407-0705
- first_name: Konstantinos
full_name: Bousmalis, Konstantinos
last_name: Bousmalis
- first_name: Stephan
full_name: Gouws, Stephan
last_name: Gouws
- first_name: Fred
full_name: Bertsch, Fred
last_name: Bertsch
- first_name: Inbar
full_name: Mosseri, Inbar
last_name: Mosseri
- first_name: Forrester
full_name: Cole, Forrester
last_name: Cole
- first_name: Kevin
full_name: Murphy, Kevin
last_name: Murphy
citation:
ama: 'Royer A, Bousmalis K, Gouws S, et al. XGAN: Unsupervised image-to-image translation
for many-to-many mappings. In: Singh R, Vatsa M, Patel VM, Ratha N, eds. Domain
Adaptation for Visual Understanding. Springer Nature; 2020:33-49. doi:10.1007/978-3-030-30671-7_3'
apa: 'Royer, A., Bousmalis, K., Gouws, S., Bertsch, F., Mosseri, I., Cole, F., &
Murphy, K. (2020). XGAN: Unsupervised image-to-image translation for many-to-many
mappings. In R. Singh, M. Vatsa, V. M. Patel, & N. Ratha (Eds.), Domain
Adaptation for Visual Understanding (pp. 33–49). Springer Nature. https://doi.org/10.1007/978-3-030-30671-7_3'
chicago: 'Royer, Amélie, Konstantinos Bousmalis, Stephan Gouws, Fred Bertsch, Inbar
Mosseri, Forrester Cole, and Kevin Murphy. “XGAN: Unsupervised Image-to-Image
Translation for Many-to-Many Mappings.” In Domain Adaptation for Visual Understanding,
edited by Richa Singh, Mayank Vatsa, Vishal M. Patel, and Nalini Ratha, 33–49.
Springer Nature, 2020. https://doi.org/10.1007/978-3-030-30671-7_3.'
ieee: 'A. Royer et al., “XGAN: Unsupervised image-to-image translation for
many-to-many mappings,” in Domain Adaptation for Visual Understanding,
R. Singh, M. Vatsa, V. M. Patel, and N. Ratha, Eds. Springer Nature, 2020, pp.
33–49.'
ista: 'Royer A, Bousmalis K, Gouws S, Bertsch F, Mosseri I, Cole F, Murphy K. 2020.XGAN:
Unsupervised image-to-image translation for many-to-many mappings. In: Domain
Adaptation for Visual Understanding. , 33–49.'
mla: 'Royer, Amélie, et al. “XGAN: Unsupervised Image-to-Image Translation for Many-to-Many
Mappings.” Domain Adaptation for Visual Understanding, edited by Richa
Singh et al., Springer Nature, 2020, pp. 33–49, doi:10.1007/978-3-030-30671-7_3.'
short: A. Royer, K. Bousmalis, S. Gouws, F. Bertsch, I. Mosseri, F. Cole, K. Murphy,
in:, R. Singh, M. Vatsa, V.M. Patel, N. Ratha (Eds.), Domain Adaptation for Visual
Understanding, Springer Nature, 2020, pp. 33–49.
date_created: 2020-07-05T22:00:46Z
date_published: 2020-01-08T00:00:00Z
date_updated: 2023-09-07T13:16:18Z
day: '08'
department:
- _id: ChLa
doi: 10.1007/978-3-030-30671-7_3
editor:
- first_name: Richa
full_name: Singh, Richa
last_name: Singh
- first_name: Mayank
full_name: Vatsa, Mayank
last_name: Vatsa
- first_name: Vishal M.
full_name: Patel, Vishal M.
last_name: Patel
- first_name: Nalini
full_name: Ratha, Nalini
last_name: Ratha
external_id:
arxiv:
- '1711.05139'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1711.05139
month: '01'
oa: 1
oa_version: Preprint
page: 33-49
publication: Domain Adaptation for Visual Understanding
publication_identifier:
isbn:
- '9783030306717'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
record:
- id: '8331'
relation: dissertation_contains
status: deleted
- id: '8390'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: 'XGAN: Unsupervised image-to-image translation for many-to-many mappings'
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '7944'
abstract:
- lang: eng
text: "This thesis considers two examples of reconfiguration problems: flipping
edges in edge-labelled triangulations of planar point sets and swapping labelled
tokens placed on vertices of a graph. In both cases the studied structures – all
the triangulations of a given point set or all token placements on a given graph
– can be thought of as vertices of the so-called reconfiguration graph, in which
two vertices are adjacent if the corresponding structures differ by a single elementary
operation – by a flip of a diagonal in a triangulation or by a swap of tokens
on adjacent vertices, respectively. We study the reconfiguration of one instance
of a structure into another via (shortest) paths in the reconfiguration graph.\r\n\r\nFor
triangulations of point sets in which each edge has a unique label and a flip
transfers the label from the removed edge to the new edge, we prove a polynomial-time
testable condition, called the Orbit Theorem, that characterizes when two triangulations
of the same point set lie in the same connected component of the reconfiguration
graph. The condition was first conjectured by Bose, Lubiw, Pathak and Verdonschot.
We additionally provide a polynomial time algorithm that computes a reconfiguring
flip sequence, if it exists. Our proof of the Orbit Theorem uses topological properties
of a certain high-dimensional cell complex that has the usual reconfiguration
graph as its 1-skeleton.\r\n\r\nIn the context of token swapping on a tree graph,
we make partial progress on the problem of finding shortest reconfiguration sequences.
We disprove the so-called Happy Leaf Conjecture and demonstrate the importance
of swapping tokens that are already placed at the correct vertices. We also prove
that a generalization of the problem to weighted coloured token swapping is NP-hard
on trees but solvable in polynomial time on paths and stars."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Zuzana
full_name: Masárová, Zuzana
id: 45CFE238-F248-11E8-B48F-1D18A9856A87
last_name: Masárová
orcid: 0000-0002-6660-1322
citation:
ama: Masárová Z. Reconfiguration problems. 2020. doi:10.15479/AT:ISTA:7944
apa: Masárová, Z. (2020). Reconfiguration problems. Institute of Science
and Technology Austria. https://doi.org/10.15479/AT:ISTA:7944
chicago: Masárová, Zuzana. “Reconfiguration Problems.” Institute of Science and
Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:7944.
ieee: Z. Masárová, “Reconfiguration problems,” Institute of Science and Technology
Austria, 2020.
ista: Masárová Z. 2020. Reconfiguration problems. Institute of Science and Technology
Austria.
mla: Masárová, Zuzana. Reconfiguration Problems. Institute of Science and
Technology Austria, 2020, doi:10.15479/AT:ISTA:7944.
short: Z. Masárová, Reconfiguration Problems, Institute of Science and Technology
Austria, 2020.
date_created: 2020-06-08T00:49:46Z
date_published: 2020-06-09T00:00:00Z
date_updated: 2023-09-07T13:17:37Z
day: '09'
ddc:
- '516'
- '514'
degree_awarded: PhD
department:
- _id: HeEd
- _id: UlWa
doi: 10.15479/AT:ISTA:7944
file:
- access_level: open_access
checksum: df688bc5a82b50baee0b99d25fc7b7f0
content_type: application/pdf
creator: zmasarov
date_created: 2020-06-08T00:34:00Z
date_updated: 2020-07-14T12:48:05Z
file_id: '7945'
file_name: THESIS_Zuzka_Masarova.pdf
file_size: 13661779
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checksum: 45341a35b8f5529c74010b7af43ac188
content_type: application/zip
creator: zmasarov
date_created: 2020-06-08T00:35:30Z
date_updated: 2020-07-14T12:48:05Z
file_id: '7946'
file_name: THESIS_Zuzka_Masarova_SOURCE_FILES.zip
file_size: 32184006
relation: source_file
file_date_updated: 2020-07-14T12:48:05Z
has_accepted_license: '1'
keyword:
- reconfiguration
- reconfiguration graph
- triangulations
- flip
- constrained triangulations
- shellability
- piecewise-linear balls
- token swapping
- trees
- coloured weighted token swapping
language:
- iso: eng
license: https://creativecommons.org/licenses/by-sa/4.0/
month: '06'
oa: 1
oa_version: Published Version
page: '160'
publication_identifier:
isbn:
- 978-3-99078-005-3
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '7950'
relation: part_of_dissertation
status: public
- id: '5986'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Uli
full_name: Wagner, Uli
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
title: Reconfiguration problems
tmp:
image: /images/cc_by_sa.png
legal_code_url: https://creativecommons.org/licenses/by-sa/4.0/legalcode
name: Creative Commons Attribution-ShareAlike 4.0 International Public License (CC
BY-SA 4.0)
short: CC BY-SA (4.0)
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2020'
...
---
_id: '8587'
abstract:
- lang: eng
text: Inspired by the possibility to experimentally manipulate and enhance chemical
reactivity in helium nanodroplets, we investigate the effective interaction and
the resulting correlations between two diatomic molecules immersed in a bath of
bosons. By analogy with the bipolaron, we introduce the biangulon quasiparticle
describing two rotating molecules that align with respect to each other due to
the effective attractive interaction mediated by the excitations of the bath.
We study this system in different parameter regimes and apply several theoretical
approaches to describe its properties. Using a Born–Oppenheimer approximation,
we investigate the dependence of the effective intermolecular interaction on the
rotational state of the two molecules. In the strong-coupling regime, a product-state
ansatz shows that the molecules tend to have a strong alignment in the ground
state. To investigate the system in the weak-coupling regime, we apply a one-phonon
excitation variational ansatz, which allows us to access the energy spectrum.
In comparison to the angulon quasiparticle, the biangulon shows shifted angulon
instabilities and an additional spectral instability, where resonant angular momentum
transfer between the molecules and the bath takes place. These features are proposed
as an experimentally observable signature for the formation of the biangulon quasiparticle.
Finally, by using products of single angulon and bare impurity wave functions
as basis states, we introduce a diagonalization scheme that allows us to describe
the transition from two separated angulons to a biangulon as a function of the
distance between the two molecules.
acknowledgement: We are grateful to Areg Ghazaryan for valuable discussions. M.L.
acknowledges support from the Austrian Science Fund (FWF) under Project No. P29902-N27
and from the European Research Council (ERC) Starting Grant No. 801770 (ANGULON).
G.B. acknowledges support from the Austrian Science Fund (FWF) under Project No.
M2461-N27. A.D. acknowledges funding from the European Union’s Horizon 2020 research
and innovation programme under the European Research Council (ERC) Grant Agreement
No. 694227 and under the Marie Sklodowska-Curie Grant Agreement No. 836146. R.S.
was supported by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)
under Germany’s Excellence Strategy – EXC-2111 – 390814868.
article_number: '164302'
article_processing_charge: No
article_type: original
author:
- first_name: Xiang
full_name: Li, Xiang
id: 4B7E523C-F248-11E8-B48F-1D18A9856A87
last_name: Li
- first_name: Enderalp
full_name: Yakaboylu, Enderalp
id: 38CB71F6-F248-11E8-B48F-1D18A9856A87
last_name: Yakaboylu
orcid: 0000-0001-5973-0874
- first_name: Giacomo
full_name: Bighin, Giacomo
id: 4CA96FD4-F248-11E8-B48F-1D18A9856A87
last_name: Bighin
orcid: 0000-0001-8823-9777
- first_name: Richard
full_name: Schmidt, Richard
last_name: Schmidt
- first_name: Mikhail
full_name: Lemeshko, Mikhail
id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
last_name: Lemeshko
orcid: 0000-0002-6990-7802
- first_name: Andreas
full_name: Deuchert, Andreas
id: 4DA65CD0-F248-11E8-B48F-1D18A9856A87
last_name: Deuchert
orcid: 0000-0003-3146-6746
citation:
ama: Li X, Yakaboylu E, Bighin G, Schmidt R, Lemeshko M, Deuchert A. Intermolecular
forces and correlations mediated by a phonon bath. The Journal of Chemical
Physics. 2020;152(16). doi:10.1063/1.5144759
apa: Li, X., Yakaboylu, E., Bighin, G., Schmidt, R., Lemeshko, M., & Deuchert,
A. (2020). Intermolecular forces and correlations mediated by a phonon bath. The
Journal of Chemical Physics. AIP Publishing. https://doi.org/10.1063/1.5144759
chicago: Li, Xiang, Enderalp Yakaboylu, Giacomo Bighin, Richard Schmidt, Mikhail
Lemeshko, and Andreas Deuchert. “Intermolecular Forces and Correlations Mediated
by a Phonon Bath.” The Journal of Chemical Physics. AIP Publishing, 2020.
https://doi.org/10.1063/1.5144759.
ieee: X. Li, E. Yakaboylu, G. Bighin, R. Schmidt, M. Lemeshko, and A. Deuchert,
“Intermolecular forces and correlations mediated by a phonon bath,” The Journal
of Chemical Physics, vol. 152, no. 16. AIP Publishing, 2020.
ista: Li X, Yakaboylu E, Bighin G, Schmidt R, Lemeshko M, Deuchert A. 2020. Intermolecular
forces and correlations mediated by a phonon bath. The Journal of Chemical Physics.
152(16), 164302.
mla: Li, Xiang, et al. “Intermolecular Forces and Correlations Mediated by a Phonon
Bath.” The Journal of Chemical Physics, vol. 152, no. 16, 164302, AIP Publishing,
2020, doi:10.1063/1.5144759.
short: X. Li, E. Yakaboylu, G. Bighin, R. Schmidt, M. Lemeshko, A. Deuchert, The
Journal of Chemical Physics 152 (2020).
date_created: 2020-09-30T10:33:17Z
date_published: 2020-04-27T00:00:00Z
date_updated: 2023-09-07T13:16:42Z
day: '27'
department:
- _id: MiLe
- _id: RoSe
doi: 10.1063/1.5144759
ec_funded: 1
external_id:
arxiv:
- '1912.02658'
isi:
- '000530448300001'
intvolume: ' 152'
isi: 1
issue: '16'
keyword:
- Physical and Theoretical Chemistry
- General Physics and Astronomy
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1912.02658
month: '04'
oa: 1
oa_version: Preprint
project:
- _id: 26031614-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P29902
name: Quantum rotations in the presence of a many-body environment
- _id: 2688CF98-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '801770'
name: 'Angulon: physics and applications of a new quasiparticle'
- _id: 26986C82-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: M02641
name: A path-integral approach to composite impurities
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '694227'
name: Analysis of quantum many-body systems
publication: The Journal of Chemical Physics
publication_identifier:
eissn:
- 1089-7690
issn:
- 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
related_material:
record:
- id: '8958'
relation: dissertation_contains
status: public
status: public
title: Intermolecular forces and correlations mediated by a phonon bath
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 152
year: '2020'
...
---
_id: '8341'
abstract:
- lang: eng
text: "One of the most striking hallmarks of the eukaryotic cell is the presence
of intracellular vesicles and organelles. Each of these membrane-enclosed compartments
has a distinct composition of lipids and proteins, which is essential for accurate
membrane traffic and homeostasis. Interestingly, their biochemical identities
are achieved with the help\r\nof small GTPases of the Rab family, which cycle
between GDP- and GTP-bound forms on the selected membrane surface. While this
activity switch is well understood for an individual protein, how Rab GTPases
collectively transition between states to generate decisive signal propagation
in space and time is unclear. In my PhD thesis, I present\r\nin vitro reconstitution
experiments with theoretical modeling to systematically study a minimal Rab5 activation
network from bottom-up. We find that positive feedback based on known molecular
interactions gives rise to bistable GTPase activity switching on system’s scale.
Furthermore, we determine that collective transition near the critical\r\npoint
is intrinsically stochastic and provide evidence that the inactive Rab5 abundance
on the membrane can shape the network response. Finally, we demonstrate that collective
switching can spread on the lipid bilayer as a traveling activation wave, representing
a possible emergent activity pattern in endosomal maturation. Together, our\r\nfindings
reveal new insights into the self-organization properties of signaling networks
away from chemical equilibrium. Our work highlights the importance of systematic
characterization of biochemical systems in well-defined physiological conditions.
This way, we were able to answer long-standing open questions in the field and
close the gap between regulatory processes on a molecular scale and emergent responses
on system’s level."
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
- _id: NanoFab
acknowledgement: My thanks goes to the Loose lab members, BioImaging, Life Science
and Nanofabrication Facilities and the wonderful international community at IST
for sharing this experience with me.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Urban
full_name: Bezeljak, Urban
id: 2A58201A-F248-11E8-B48F-1D18A9856A87
last_name: Bezeljak
orcid: 0000-0003-1365-5631
citation:
ama: Bezeljak U. In vitro reconstitution of a Rab activation switch. 2020. doi:10.15479/AT:ISTA:8341
apa: Bezeljak, U. (2020). In vitro reconstitution of a Rab activation switch.
Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:8341
chicago: Bezeljak, Urban. “In Vitro Reconstitution of a Rab Activation Switch.”
Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:8341.
ieee: U. Bezeljak, “In vitro reconstitution of a Rab activation switch,” Institute
of Science and Technology Austria, 2020.
ista: Bezeljak U. 2020. In vitro reconstitution of a Rab activation switch. Institute
of Science and Technology Austria.
mla: Bezeljak, Urban. In Vitro Reconstitution of a Rab Activation Switch.
Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:8341.
short: U. Bezeljak, In Vitro Reconstitution of a Rab Activation Switch, Institute
of Science and Technology Austria, 2020.
date_created: 2020-09-08T08:53:53Z
date_published: 2020-09-08T00:00:00Z
date_updated: 2023-09-07T13:17:06Z
day: '08'
ddc:
- '570'
degree_awarded: PhD
department:
- _id: MaLo
doi: 10.15479/AT:ISTA:8341
file:
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checksum: 70871b335a595252a66c6bbf0824fb02
content_type: application/x-zip-compressed
creator: dernst
date_created: 2020-09-08T09:00:29Z
date_updated: 2021-09-16T12:49:12Z
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file_name: 2020_Urban_Bezeljak_Thesis_TeX.zip
file_size: 65246782
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date_created: 2020-09-08T09:00:27Z
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file_name: 2020_Urban_Bezeljak_Thesis.pdf
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language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: '215'
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '7580'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Martin
full_name: Loose, Martin
id: 462D4284-F248-11E8-B48F-1D18A9856A87
last_name: Loose
orcid: 0000-0001-7309-9724
title: In vitro reconstitution of a Rab activation switch
tmp:
image: /images/cc_by_nc_sa.png
legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
BY-NC-SA 4.0)
short: CC BY-NC-SA (4.0)
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2020'
...
---
_id: '7580'
abstract:
- lang: eng
text: The eukaryotic endomembrane system is controlled by small GTPases of the Rab
family, which are activated at defined times and locations in a switch-like manner.
While this switch is well understood for an individual protein, how regulatory
networks produce intracellular activity patterns is currently not known. Here,
we combine in vitro reconstitution experiments with computational modeling to
study a minimal Rab5 activation network. We find that the molecular interactions
in this system give rise to a positive feedback and bistable collective switching
of Rab5. Furthermore, we find that switching near the critical point is intrinsically
stochastic and provide evidence that controlling the inactive population of Rab5
on the membrane can shape the network response. Notably, we demonstrate that collective
switching can spread on the membrane surface as a traveling wave of Rab5 activation.
Together, our findings reveal how biochemical signaling networks control vesicle
trafficking pathways and how their nonequilibrium properties define the spatiotemporal
organization of the cell.
acknowledged_ssus:
- _id: Bio
- _id: LifeSc
article_processing_charge: No
article_type: original
author:
- first_name: Urban
full_name: Bezeljak, Urban
id: 2A58201A-F248-11E8-B48F-1D18A9856A87
last_name: Bezeljak
orcid: 0000-0003-1365-5631
- first_name: Hrushikesh
full_name: Loya, Hrushikesh
last_name: Loya
- first_name: Beata M
full_name: Kaczmarek, Beata M
id: 36FA4AFA-F248-11E8-B48F-1D18A9856A87
last_name: Kaczmarek
- first_name: Timothy E.
full_name: Saunders, Timothy E.
last_name: Saunders
- first_name: Martin
full_name: Loose, Martin
id: 462D4284-F248-11E8-B48F-1D18A9856A87
last_name: Loose
orcid: 0000-0001-7309-9724
citation:
ama: Bezeljak U, Loya H, Kaczmarek BM, Saunders TE, Loose M. Stochastic activation
and bistability in a Rab GTPase regulatory network. Proceedings of the National
Academy of Sciences. 2020;117(12):6504-6549. doi:10.1073/pnas.1921027117
apa: Bezeljak, U., Loya, H., Kaczmarek, B. M., Saunders, T. E., & Loose, M.
(2020). Stochastic activation and bistability in a Rab GTPase regulatory network.
Proceedings of the National Academy of Sciences. Proceedings of the National
Academy of Sciences. https://doi.org/10.1073/pnas.1921027117
chicago: Bezeljak, Urban, Hrushikesh Loya, Beata M Kaczmarek, Timothy E. Saunders,
and Martin Loose. “Stochastic Activation and Bistability in a Rab GTPase Regulatory
Network.” Proceedings of the National Academy of Sciences. Proceedings
of the National Academy of Sciences, 2020. https://doi.org/10.1073/pnas.1921027117.
ieee: U. Bezeljak, H. Loya, B. M. Kaczmarek, T. E. Saunders, and M. Loose, “Stochastic
activation and bistability in a Rab GTPase regulatory network,” Proceedings
of the National Academy of Sciences, vol. 117, no. 12. Proceedings of the
National Academy of Sciences, pp. 6504–6549, 2020.
ista: Bezeljak U, Loya H, Kaczmarek BM, Saunders TE, Loose M. 2020. Stochastic activation
and bistability in a Rab GTPase regulatory network. Proceedings of the National
Academy of Sciences. 117(12), 6504–6549.
mla: Bezeljak, Urban, et al. “Stochastic Activation and Bistability in a Rab GTPase
Regulatory Network.” Proceedings of the National Academy of Sciences, vol.
117, no. 12, Proceedings of the National Academy of Sciences, 2020, pp. 6504–49,
doi:10.1073/pnas.1921027117.
short: U. Bezeljak, H. Loya, B.M. Kaczmarek, T.E. Saunders, M. Loose, Proceedings
of the National Academy of Sciences 117 (2020) 6504–6549.
date_created: 2020-03-12T05:32:26Z
date_published: 2020-03-24T00:00:00Z
date_updated: 2023-09-07T13:17:06Z
day: '24'
department:
- _id: MaLo
- _id: CaBe
doi: 10.1073/pnas.1921027117
external_id:
isi:
- '000521821800040'
intvolume: ' 117'
isi: 1
issue: '12'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1101/776567
month: '03'
oa: 1
oa_version: Preprint
page: 6504-6549
project:
- _id: 2599F062-B435-11E9-9278-68D0E5697425
grant_number: RGY0083/2016
name: Reconstitution of cell polarity and axis determination in a cell-free system
publication: Proceedings of the National Academy of Sciences
publication_identifier:
eissn:
- 1091-6490
issn:
- 0027-8424
publication_status: published
publisher: Proceedings of the National Academy of Sciences
quality_controlled: '1'
related_material:
link:
- description: News on IST Homepage
relation: press_release
url: https://ist.ac.at/en/news/proteins-as-molecular-switches/
record:
- id: '8341'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Stochastic activation and bistability in a Rab GTPase regulatory network
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 117
year: '2020'
...
---
_id: '8032'
abstract:
- lang: eng
text: "Algorithms in computational 3-manifold topology typically take a triangulation
as an input and return topological information about the underlying 3-manifold.
However, extracting the desired information from a triangulation (e.g., evaluating
an invariant) is often computationally very expensive. In recent years this complexity
barrier has been successfully tackled in some cases by importing ideas from the
theory of parameterized algorithms into the realm of 3-manifolds. Various computationally
hard problems were shown to be efficiently solvable for input triangulations that
are sufficiently “tree-like.”\r\nIn this thesis we focus on the key combinatorial
parameter in the above context: we consider the treewidth of a compact, orientable
3-manifold, i.e., the smallest treewidth of the dual graph of any triangulation
thereof. By building on the work of Scharlemann–Thompson and Scharlemann–Schultens–Saito
on generalized Heegaard splittings, and on the work of Jaco–Rubinstein on layered
triangulations, we establish quantitative relations between the treewidth and
classical topological invariants of a 3-manifold. In particular, among other results,
we show that the treewidth of a closed, orientable, irreducible, non-Haken 3-manifold
is always within a constant factor of its Heegaard genus."
acknowledged_ssus:
- _id: E-Lib
- _id: CampIT
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Kristóf
full_name: Huszár, Kristóf
id: 33C26278-F248-11E8-B48F-1D18A9856A87
last_name: Huszár
orcid: 0000-0002-5445-5057
citation:
ama: Huszár K. Combinatorial width parameters for 3-dimensional manifolds. 2020.
doi:10.15479/AT:ISTA:8032
apa: Huszár, K. (2020). Combinatorial width parameters for 3-dimensional manifolds.
Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:8032
chicago: Huszár, Kristóf. “Combinatorial Width Parameters for 3-Dimensional Manifolds.”
Institute of Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:8032.
ieee: K. Huszár, “Combinatorial width parameters for 3-dimensional manifolds,” Institute
of Science and Technology Austria, 2020.
ista: Huszár K. 2020. Combinatorial width parameters for 3-dimensional manifolds.
Institute of Science and Technology Austria.
mla: Huszár, Kristóf. Combinatorial Width Parameters for 3-Dimensional Manifolds.
Institute of Science and Technology Austria, 2020, doi:10.15479/AT:ISTA:8032.
short: K. Huszár, Combinatorial Width Parameters for 3-Dimensional Manifolds, Institute
of Science and Technology Austria, 2020.
date_created: 2020-06-26T10:00:36Z
date_published: 2020-06-26T00:00:00Z
date_updated: 2023-09-07T13:18:27Z
day: '26'
ddc:
- '514'
degree_awarded: PhD
department:
- _id: UlWa
doi: 10.15479/AT:ISTA:8032
file:
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checksum: bd8be6e4f1addc863dfcc0fad29ee9c3
content_type: application/pdf
creator: khuszar
date_created: 2020-06-26T10:03:58Z
date_updated: 2020-07-14T12:48:08Z
file_id: '8034'
file_name: Kristof_Huszar-Thesis.pdf
file_size: 2637562
relation: main_file
- access_level: closed
checksum: d5f8456202b32f4a77552ef47a2837d1
content_type: application/x-zip-compressed
creator: khuszar
date_created: 2020-06-26T10:10:06Z
date_updated: 2020-07-14T12:48:08Z
file_id: '8035'
file_name: Kristof_Huszar-Thesis-source.zip
file_size: 7163491
relation: source_file
file_date_updated: 2020-07-14T12:48:08Z
has_accepted_license: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: xviii+120
publication_identifier:
isbn:
- 978-3-99078-006-0
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '6556'
relation: dissertation_contains
status: public
- id: '7093'
relation: dissertation_contains
status: public
status: public
supervisor:
- first_name: Uli
full_name: Wagner, Uli
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
- first_name: Jonathan
full_name: Spreer, Jonathan
last_name: Spreer
title: Combinatorial width parameters for 3-dimensional manifolds
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2020'
...
---
_id: '8195'
abstract:
- lang: eng
text: This paper presents a foundation for refining concurrent programs with structured
control flow. The verification problem is decomposed into subproblems that aid
interactive program development, proof reuse, and automation. The formalization
in this paper is the basis of a new design and implementation of the Civl verifier.
acknowledgement: "Bernhard Kragl and Thomas A. Henzinger were supported by\r\nthe
Austrian Science Fund (FWF) under grant Z211-N23 (Wittgenstein Award)."
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Bernhard
full_name: Kragl, Bernhard
id: 320FC952-F248-11E8-B48F-1D18A9856A87
last_name: Kragl
orcid: 0000-0001-7745-9117
- first_name: Shaz
full_name: Qadeer, Shaz
last_name: Qadeer
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000-0002-2985-7724
citation:
ama: 'Kragl B, Qadeer S, Henzinger TA. Refinement for structured concurrent programs.
In: Computer Aided Verification. Vol 12224. Springer Nature; 2020:275-298.
doi:10.1007/978-3-030-53288-8_14'
apa: Kragl, B., Qadeer, S., & Henzinger, T. A. (2020). Refinement for structured
concurrent programs. In Computer Aided Verification (Vol. 12224, pp. 275–298).
Springer Nature. https://doi.org/10.1007/978-3-030-53288-8_14
chicago: Kragl, Bernhard, Shaz Qadeer, and Thomas A Henzinger. “Refinement for Structured
Concurrent Programs.” In Computer Aided Verification, 12224:275–98. Springer
Nature, 2020. https://doi.org/10.1007/978-3-030-53288-8_14.
ieee: B. Kragl, S. Qadeer, and T. A. Henzinger, “Refinement for structured concurrent
programs,” in Computer Aided Verification, 2020, vol. 12224, pp. 275–298.
ista: Kragl B, Qadeer S, Henzinger TA. 2020. Refinement for structured concurrent
programs. Computer Aided Verification. , LNCS, vol. 12224, 275–298.
mla: Kragl, Bernhard, et al. “Refinement for Structured Concurrent Programs.” Computer
Aided Verification, vol. 12224, Springer Nature, 2020, pp. 275–98, doi:10.1007/978-3-030-53288-8_14.
short: B. Kragl, S. Qadeer, T.A. Henzinger, in:, Computer Aided Verification, Springer
Nature, 2020, pp. 275–298.
date_created: 2020-08-03T11:45:35Z
date_published: 2020-07-14T00:00:00Z
date_updated: 2023-09-07T13:18:00Z
day: '14'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/978-3-030-53288-8_14
external_id:
isi:
- '000695276000014'
file:
- access_level: open_access
content_type: application/pdf
creator: dernst
date_created: 2020-08-06T08:14:54Z
date_updated: 2020-08-06T08:14:54Z
file_id: '8201'
file_name: 2020_LNCS_Kragl.pdf
file_size: 804237
relation: main_file
success: 1
file_date_updated: 2020-08-06T08:14:54Z
has_accepted_license: '1'
intvolume: ' 12224'
isi: 1
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 275-298
project:
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z211
name: The Wittgenstein Prize
publication: Computer Aided Verification
publication_identifier:
eisbn:
- '9783030532888'
eissn:
- 1611-3349
isbn:
- '9783030532871'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
record:
- id: '8332'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Refinement for structured concurrent programs
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 12224
year: '2020'
...
---
_id: '8012'
abstract:
- lang: eng
text: Asynchronous programs are notoriously difficult to reason about because they
spawn computation tasks which take effect asynchronously in a nondeterministic
way. Devising inductive invariants for such programs requires understanding and
stating complex relationships between an unbounded number of computation tasks
in arbitrarily long executions. In this paper, we introduce inductive sequentialization,
a new proof rule that sidesteps this complexity via a sequential reduction, a
sequential program that captures every behavior of the original program up to
reordering of coarse-grained commutative actions. A sequential reduction of a
concurrent program is easy to reason about since it corresponds to a simple execution
of the program in an idealized synchronous environment, where processes act in
a fixed order and at the same speed. We have implemented and integrated our proof
rule in the CIVL verifier, allowing us to provably derive fine-grained implementations
of asynchronous programs. We have successfully applied our proof rule to a diverse
set of message-passing protocols, including leader election protocols, two-phase
commit, and Paxos.
article_processing_charge: No
author:
- first_name: Bernhard
full_name: Kragl, Bernhard
id: 320FC952-F248-11E8-B48F-1D18A9856A87
last_name: Kragl
orcid: 0000-0001-7745-9117
- first_name: Constantin
full_name: Enea, Constantin
last_name: Enea
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000-0002-2985-7724
- first_name: Suha Orhun
full_name: Mutluergil, Suha Orhun
last_name: Mutluergil
- first_name: Shaz
full_name: Qadeer, Shaz
last_name: Qadeer
citation:
ama: 'Kragl B, Enea C, Henzinger TA, Mutluergil SO, Qadeer S. Inductive sequentialization
of asynchronous programs. In: Proceedings of the 41st ACM SIGPLAN Conference
on Programming Language Design and Implementation. Association for Computing
Machinery; 2020:227-242. doi:10.1145/3385412.3385980'
apa: 'Kragl, B., Enea, C., Henzinger, T. A., Mutluergil, S. O., & Qadeer, S.
(2020). Inductive sequentialization of asynchronous programs. In Proceedings
of the 41st ACM SIGPLAN Conference on Programming Language Design and Implementation
(pp. 227–242). London, United Kingdom: Association for Computing Machinery. https://doi.org/10.1145/3385412.3385980'
chicago: Kragl, Bernhard, Constantin Enea, Thomas A Henzinger, Suha Orhun Mutluergil,
and Shaz Qadeer. “Inductive Sequentialization of Asynchronous Programs.” In Proceedings
of the 41st ACM SIGPLAN Conference on Programming Language Design and Implementation,
227–42. Association for Computing Machinery, 2020. https://doi.org/10.1145/3385412.3385980.
ieee: B. Kragl, C. Enea, T. A. Henzinger, S. O. Mutluergil, and S. Qadeer, “Inductive
sequentialization of asynchronous programs,” in Proceedings of the 41st ACM
SIGPLAN Conference on Programming Language Design and Implementation, London,
United Kingdom, 2020, pp. 227–242.
ista: 'Kragl B, Enea C, Henzinger TA, Mutluergil SO, Qadeer S. 2020. Inductive sequentialization
of asynchronous programs. Proceedings of the 41st ACM SIGPLAN Conference on Programming
Language Design and Implementation. PLDI: Programming Language Design and Implementation,
227–242.'
mla: Kragl, Bernhard, et al. “Inductive Sequentialization of Asynchronous Programs.”
Proceedings of the 41st ACM SIGPLAN Conference on Programming Language Design
and Implementation, Association for Computing Machinery, 2020, pp. 227–42,
doi:10.1145/3385412.3385980.
short: B. Kragl, C. Enea, T.A. Henzinger, S.O. Mutluergil, S. Qadeer, in:, Proceedings
of the 41st ACM SIGPLAN Conference on Programming Language Design and Implementation,
Association for Computing Machinery, 2020, pp. 227–242.
conference:
end_date: 2020-06-20
location: London, United Kingdom
name: 'PLDI: Programming Language Design and Implementation'
start_date: 2020-06-15
date_created: 2020-06-25T11:40:16Z
date_published: 2020-06-01T00:00:00Z
date_updated: 2023-09-07T13:18:00Z
day: '01'
department:
- _id: ToHe
doi: 10.1145/3385412.3385980
external_id:
isi:
- '000614622300016'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1145/3385412.3385980
month: '06'
oa: 1
oa_version: Published Version
page: 227-242
project:
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z211
name: The Wittgenstein Prize
publication: Proceedings of the 41st ACM SIGPLAN Conference on Programming Language
Design and Implementation
publication_identifier:
isbn:
- '9781450376136'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
related_material:
record:
- id: '8332'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Inductive sequentialization of asynchronous programs
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
year: '2020'
...
---
_id: '8358'
abstract:
- lang: eng
text: "During bacterial cell division, the tubulin-homolog FtsZ forms a ring-like
structure at the center of the cell. This so-called Z-ring acts as a scaffold
recruiting several division-related proteins to mid-cell and plays a key role
in distributing proteins at the division site, a feature driven by the treadmilling
motion of FtsZ filaments around the septum. What regulates the architecture, dynamics
and stability of the Z-ring is still poorly understood, but FtsZ-associated proteins
(Zaps) are known to play an important role. \r\nAdvances in fluorescence microscopy
and in vitro reconstitution experiments have helped to shed light into some of
the dynamic properties of these complex systems, but methods that allow to collect
and analyze large quantitative data sets of the underlying polymer dynamics are
still missing.\r\nHere, using an in vitro reconstitution approach, we studied
how different Zaps affect FtsZ filament dynamics and organization into large-scale
patterns, giving special emphasis to the role of the well-conserved protein ZapA.
For this purpose, we use high-resolution fluorescence microscopy combined with
novel image analysis workfows to study pattern organization and polymerization
dynamics of active filaments. We quantified the influence of Zaps on FtsZ on three
diferent spatial scales: the large-scale organization of the membrane-bound filament
network, the underlying\r\npolymerization dynamics and the behavior of single
molecules.\r\nWe found that ZapA cooperatively increases the spatial order of
the filament network, binds only transiently to FtsZ filaments and has no effect
on filament length and treadmilling velocity. Our data provides a model for how
FtsZ-associated proteins can increase the precision and stability of the bacterial
cell division machinery in a\r\nswitch-like manner, without compromising filament
dynamics. Furthermore, we believe that our automated quantitative methods can
be used to analyze a large variety of dynamic cytoskeletal systems, using standard
time-lapse\r\nmovies of homogeneously labeled proteins obtained from experiments
in vitro or even inside the living cell.\r\n"
acknowledged_ssus:
- _id: Bio
acknowledgement: I should also express my gratitude to the bioimaging facility at
IST Austria, for their assistance with the TIRF setup over the years, and especially
to Christoph Sommer, who gave me a lot of input when I was starting to dive into
programming.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Paulo R
full_name: Dos Santos Caldas, Paulo R
id: 38FCDB4C-F248-11E8-B48F-1D18A9856A87
last_name: Dos Santos Caldas
orcid: 0000-0001-6730-4461
citation:
ama: Dos Santos Caldas PR. Organization and dynamics of treadmilling filaments in
cytoskeletal networks of FtsZ and its crosslinkers. 2020. doi:10.15479/AT:ISTA:8358
apa: Dos Santos Caldas, P. R. (2020). Organization and dynamics of treadmilling
filaments in cytoskeletal networks of FtsZ and its crosslinkers. Institute
of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:8358
chicago: Dos Santos Caldas, Paulo R. “Organization and Dynamics of Treadmilling
Filaments in Cytoskeletal Networks of FtsZ and Its Crosslinkers.” Institute of
Science and Technology Austria, 2020. https://doi.org/10.15479/AT:ISTA:8358.
ieee: P. R. Dos Santos Caldas, “Organization and dynamics of treadmilling filaments
in cytoskeletal networks of FtsZ and its crosslinkers,” Institute of Science and
Technology Austria, 2020.
ista: Dos Santos Caldas PR. 2020. Organization and dynamics of treadmilling filaments
in cytoskeletal networks of FtsZ and its crosslinkers. Institute of Science and
Technology Austria.
mla: Dos Santos Caldas, Paulo R. Organization and Dynamics of Treadmilling Filaments
in Cytoskeletal Networks of FtsZ and Its Crosslinkers. Institute of Science
and Technology Austria, 2020, doi:10.15479/AT:ISTA:8358.
short: P.R. Dos Santos Caldas, Organization and Dynamics of Treadmilling Filaments
in Cytoskeletal Networks of FtsZ and Its Crosslinkers, Institute of Science and
Technology Austria, 2020.
date_created: 2020-09-10T09:26:49Z
date_published: 2020-09-10T00:00:00Z
date_updated: 2023-09-07T13:18:51Z
day: '10'
ddc:
- '572'
degree_awarded: PhD
department:
- _id: MaLo
doi: 10.15479/AT:ISTA:8358
file:
- access_level: open_access
checksum: 882f93fe9c351962120e2669b84bf088
content_type: application/pdf
creator: pcaldas
date_created: 2020-09-10T12:11:29Z
date_updated: 2020-09-10T12:11:29Z
file_id: '8364'
file_name: phd_thesis_pcaldas.pdf
file_size: 141602462
relation: main_file
success: 1
- access_level: closed
checksum: 70cc9e399c4e41e6e6ac445ae55e8558
content_type: application/x-zip-compressed
creator: pcaldas
date_created: 2020-09-10T12:18:17Z
date_updated: 2020-09-11T07:48:10Z
file_id: '8365'
file_name: phd_thesis_latex_pcaldas.zip
file_size: 450437458
relation: source_file
file_date_updated: 2020-09-11T07:48:10Z
has_accepted_license: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: '135'
publication_identifier:
isbn:
- 978-3-99078-009-1
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '7572'
relation: dissertation_contains
status: public
- id: '7197'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Martin
full_name: Loose, Martin
id: 462D4284-F248-11E8-B48F-1D18A9856A87
last_name: Loose
orcid: 0000-0001-7309-9724
title: Organization and dynamics of treadmilling filaments in cytoskeletal networks
of FtsZ and its crosslinkers
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2020'
...
---
_id: '8703'
abstract:
- lang: eng
text: 'Even though Delaunay originally introduced his famous triangulations in the
case of infinite point sets with translational periodicity, a software that computes
such triangulations in the general case is not yet available, to the best of our
knowledge. Combining and generalizing previous work, we present a practical algorithm
for computing such triangulations. The algorithm has been implemented and experiments
show that its performance is as good as the one of the CGAL package, which is
restricted to cubic periodicity. '
alternative_title:
- LIPIcs
article_number: '75'
article_processing_charge: No
author:
- first_name: Georg F
full_name: Osang, Georg F
id: 464B40D6-F248-11E8-B48F-1D18A9856A87
last_name: Osang
orcid: 0000-0002-8882-5116
- first_name: Mael
full_name: Rouxel-Labbé, Mael
last_name: Rouxel-Labbé
- first_name: Monique
full_name: Teillaud, Monique
last_name: Teillaud
citation:
ama: 'Osang GF, Rouxel-Labbé M, Teillaud M. Generalizing CGAL periodic Delaunay
triangulations. In: 28th Annual European Symposium on Algorithms. Vol 173.
Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2020. doi:10.4230/LIPIcs.ESA.2020.75'
apa: 'Osang, G. F., Rouxel-Labbé, M., & Teillaud, M. (2020). Generalizing CGAL
periodic Delaunay triangulations. In 28th Annual European Symposium on Algorithms
(Vol. 173). Virtual, Online; Pisa, Italy: Schloss Dagstuhl - Leibniz-Zentrum für
Informatik. https://doi.org/10.4230/LIPIcs.ESA.2020.75'
chicago: Osang, Georg F, Mael Rouxel-Labbé, and Monique Teillaud. “Generalizing
CGAL Periodic Delaunay Triangulations.” In 28th Annual European Symposium on
Algorithms, Vol. 173. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020.
https://doi.org/10.4230/LIPIcs.ESA.2020.75.
ieee: G. F. Osang, M. Rouxel-Labbé, and M. Teillaud, “Generalizing CGAL periodic
Delaunay triangulations,” in 28th Annual European Symposium on Algorithms,
Virtual, Online; Pisa, Italy, 2020, vol. 173.
ista: 'Osang GF, Rouxel-Labbé M, Teillaud M. 2020. Generalizing CGAL periodic Delaunay
triangulations. 28th Annual European Symposium on Algorithms. ESA: Annual European
Symposium on Algorithms, LIPIcs, vol. 173, 75.'
mla: Osang, Georg F., et al. “Generalizing CGAL Periodic Delaunay Triangulations.”
28th Annual European Symposium on Algorithms, vol. 173, 75, Schloss Dagstuhl
- Leibniz-Zentrum für Informatik, 2020, doi:10.4230/LIPIcs.ESA.2020.75.
short: G.F. Osang, M. Rouxel-Labbé, M. Teillaud, in:, 28th Annual European Symposium
on Algorithms, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2020.
conference:
end_date: 2020-09-09
location: Virtual, Online; Pisa, Italy
name: 'ESA: Annual European Symposium on Algorithms'
start_date: 2020-09-07
date_created: 2020-10-25T23:01:18Z
date_published: 2020-08-26T00:00:00Z
date_updated: 2023-09-07T13:29:00Z
day: '26'
ddc:
- '000'
department:
- _id: HeEd
doi: 10.4230/LIPIcs.ESA.2020.75
ec_funded: 1
file:
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checksum: fe0f7c49a99ed870c671b911e10d5496
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date_created: 2020-10-27T14:31:52Z
date_updated: 2020-10-27T14:31:52Z
file_id: '8712'
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file_size: 733291
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intvolume: ' 173'
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license: https://creativecommons.org/licenses/by/3.0/
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '788183'
name: Alpha Shape Theory Extended
publication: 28th Annual European Symposium on Algorithms
publication_identifier:
isbn:
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issn:
- '18688969'
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
related_material:
record:
- id: '9056'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Generalizing CGAL periodic Delaunay triangulations
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/3.0/legalcode
name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)
short: CC BY (3.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 173
year: '2020'
...
---
_id: '7481'
abstract:
- lang: eng
text: 'We address the following question: How redundant is the parameterisation
of ReLU networks? Specifically, we consider transformations of the weight space
which leave the function implemented by the network intact. Two such transformations
are known for feed-forward architectures: permutation of neurons within a layer,
and positive scaling of all incoming weights of a neuron coupled with inverse
scaling of its outgoing weights. In this work, we show for architectures with
non-increasing widths that permutation and scaling are in fact the only function-preserving
weight transformations. For any eligible architecture we give an explicit construction
of a neural network such that any other network that implements the same function
can be obtained from the original one by the application of permutations and rescaling. The
proof relies on a geometric understanding of boundaries between linear regions
of ReLU networks, and we hope the developed mathematical tools are of independent
interest.'
article_processing_charge: No
author:
- first_name: Phuong
full_name: Bui Thi Mai, Phuong
id: 3EC6EE64-F248-11E8-B48F-1D18A9856A87
last_name: Bui Thi Mai
- first_name: Christoph
full_name: Lampert, Christoph
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
citation:
ama: 'Phuong M, Lampert C. Functional vs. parametric equivalence of ReLU networks.
In: 8th International Conference on Learning Representations. ; 2020.'
apa: Phuong, M., & Lampert, C. (2020). Functional vs. parametric equivalence
of ReLU networks. In 8th International Conference on Learning Representations.
Online.
chicago: Phuong, Mary, and Christoph Lampert. “Functional vs. Parametric Equivalence
of ReLU Networks.” In 8th International Conference on Learning Representations,
2020.
ieee: M. Phuong and C. Lampert, “Functional vs. parametric equivalence of ReLU networks,”
in 8th International Conference on Learning Representations, Online, 2020.
ista: 'Phuong M, Lampert C. 2020. Functional vs. parametric equivalence of ReLU
networks. 8th International Conference on Learning Representations. ICLR: International
Conference on Learning Representations.'
mla: Phuong, Mary, and Christoph Lampert. “Functional vs. Parametric Equivalence
of ReLU Networks.” 8th International Conference on Learning Representations,
2020.
short: M. Phuong, C. Lampert, in:, 8th International Conference on Learning Representations,
2020.
conference:
end_date: 2020-04-30
location: Online
name: 'ICLR: International Conference on Learning Representations'
start_date: 2020-04-27
date_created: 2020-02-11T09:07:37Z
date_published: 2020-04-26T00:00:00Z
date_updated: 2023-09-07T13:29:50Z
day: '26'
ddc:
- '000'
department:
- _id: ChLa
file:
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checksum: 8d372ea5defd8cb8fdc430111ed754a9
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creator: bphuong
date_created: 2020-02-11T09:07:27Z
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file_size: 405469
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file_date_updated: 2020-07-14T12:47:59Z
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language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
publication: 8th International Conference on Learning Representations
publication_status: published
quality_controlled: '1'
related_material:
link:
- relation: supplementary_material
url: https://iclr.cc/virtual_2020/poster_Bylx-TNKvH.html
record:
- id: '9418'
relation: dissertation_contains
status: public
status: public
title: Functional vs. parametric equivalence of ReLU networks
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2020'
...
---
_id: '9781'
abstract:
- lang: eng
text: We consider the Pekar functional on a ball in ℝ3. We prove uniqueness of minimizers,
and a quadratic lower bound in terms of the distance to the minimizer. The latter
follows from nondegeneracy of the Hessian at the minimum.
acknowledgement: We are grateful for the hospitality at the Mittag-Leffler Institute,
where part of this work has been done. The work of the authors was supported by
the European Research Council (ERC)under the European Union's Horizon 2020 research
and innovation programme grant 694227.
article_processing_charge: No
article_type: original
author:
- first_name: Dario
full_name: Feliciangeli, Dario
id: 41A639AA-F248-11E8-B48F-1D18A9856A87
last_name: Feliciangeli
orcid: 0000-0003-0754-8530
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Feliciangeli D, Seiringer R. Uniqueness and nondegeneracy of minimizers of
the Pekar functional on a ball. SIAM Journal on Mathematical Analysis.
2020;52(1):605-622. doi:10.1137/19m126284x
apa: Feliciangeli, D., & Seiringer, R. (2020). Uniqueness and nondegeneracy
of minimizers of the Pekar functional on a ball. SIAM Journal on Mathematical
Analysis. Society for Industrial & Applied Mathematics . https://doi.org/10.1137/19m126284x
chicago: Feliciangeli, Dario, and Robert Seiringer. “Uniqueness and Nondegeneracy
of Minimizers of the Pekar Functional on a Ball.” SIAM Journal on Mathematical
Analysis. Society for Industrial & Applied Mathematics , 2020. https://doi.org/10.1137/19m126284x.
ieee: D. Feliciangeli and R. Seiringer, “Uniqueness and nondegeneracy of minimizers
of the Pekar functional on a ball,” SIAM Journal on Mathematical Analysis,
vol. 52, no. 1. Society for Industrial & Applied Mathematics , pp. 605–622,
2020.
ista: Feliciangeli D, Seiringer R. 2020. Uniqueness and nondegeneracy of minimizers
of the Pekar functional on a ball. SIAM Journal on Mathematical Analysis. 52(1),
605–622.
mla: Feliciangeli, Dario, and Robert Seiringer. “Uniqueness and Nondegeneracy of
Minimizers of the Pekar Functional on a Ball.” SIAM Journal on Mathematical
Analysis, vol. 52, no. 1, Society for Industrial & Applied Mathematics
, 2020, pp. 605–22, doi:10.1137/19m126284x.
short: D. Feliciangeli, R. Seiringer, SIAM Journal on Mathematical Analysis 52 (2020)
605–622.
date_created: 2021-08-06T07:34:16Z
date_published: 2020-02-12T00:00:00Z
date_updated: 2023-09-07T13:30:11Z
day: '12'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1137/19m126284x
ec_funded: 1
external_id:
arxiv:
- '1904.08647 '
isi:
- '000546967700022'
has_accepted_license: '1'
intvolume: ' 52'
isi: 1
issue: '1'
keyword:
- Applied Mathematics
- Computational Mathematics
- Analysis
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1904.08647
month: '02'
oa: 1
oa_version: Preprint
page: 605-622
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '694227'
name: Analysis of quantum many-body systems
publication: SIAM Journal on Mathematical Analysis
publication_identifier:
eissn:
- 1095-7154
issn:
- 0036-1410
publication_status: published
publisher: 'Society for Industrial & Applied Mathematics '
quality_controlled: '1'
related_material:
record:
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relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Uniqueness and nondegeneracy of minimizers of the Pekar functional on a ball
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legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 52
year: '2020'
...
---
_id: '7489'
abstract:
- lang: eng
text: 'In the present work, we consider the evolution of two fluids separated by
a sharp interface in the presence of surface tension—like, for example, the evolution
of oil bubbles in water. Our main result is a weak–strong uniqueness principle
for the corresponding free boundary problem for the incompressible Navier–Stokes
equation: as long as a strong solution exists, any varifold solution must coincide
with it. In particular, in the absence of physical singularities, the concept
of varifold solutions—whose global in time existence has been shown by Abels (Interfaces
Free Bound 9(1):31–65, 2007) for general initial data—does not introduce a mechanism
for non-uniqueness. The key ingredient of our approach is the construction of
a relative entropy functional capable of controlling the interface error. If the
viscosities of the two fluids do not coincide, even for classical (strong) solutions
the gradient of the velocity field becomes discontinuous at the interface, introducing
the need for a careful additional adaption of the relative entropy.'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Julian L
full_name: Fischer, Julian L
id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
last_name: Fischer
orcid: 0000-0002-0479-558X
- first_name: Sebastian
full_name: Hensel, Sebastian
id: 4D23B7DA-F248-11E8-B48F-1D18A9856A87
last_name: Hensel
orcid: 0000-0001-7252-8072
citation:
ama: Fischer JL, Hensel S. Weak–strong uniqueness for the Navier–Stokes equation
for two fluids with surface tension. Archive for Rational Mechanics and Analysis.
2020;236:967-1087. doi:10.1007/s00205-019-01486-2
apa: Fischer, J. L., & Hensel, S. (2020). Weak–strong uniqueness for the Navier–Stokes
equation for two fluids with surface tension. Archive for Rational Mechanics
and Analysis. Springer Nature. https://doi.org/10.1007/s00205-019-01486-2
chicago: Fischer, Julian L, and Sebastian Hensel. “Weak–Strong Uniqueness for the
Navier–Stokes Equation for Two Fluids with Surface Tension.” Archive for Rational
Mechanics and Analysis. Springer Nature, 2020. https://doi.org/10.1007/s00205-019-01486-2.
ieee: J. L. Fischer and S. Hensel, “Weak–strong uniqueness for the Navier–Stokes
equation for two fluids with surface tension,” Archive for Rational Mechanics
and Analysis, vol. 236. Springer Nature, pp. 967–1087, 2020.
ista: Fischer JL, Hensel S. 2020. Weak–strong uniqueness for the Navier–Stokes equation
for two fluids with surface tension. Archive for Rational Mechanics and Analysis.
236, 967–1087.
mla: Fischer, Julian L., and Sebastian Hensel. “Weak–Strong Uniqueness for the Navier–Stokes
Equation for Two Fluids with Surface Tension.” Archive for Rational Mechanics
and Analysis, vol. 236, Springer Nature, 2020, pp. 967–1087, doi:10.1007/s00205-019-01486-2.
short: J.L. Fischer, S. Hensel, Archive for Rational Mechanics and Analysis 236
(2020) 967–1087.
date_created: 2020-02-16T23:00:50Z
date_published: 2020-05-01T00:00:00Z
date_updated: 2023-09-07T13:30:45Z
day: '01'
ddc:
- '530'
- '532'
department:
- _id: JuFi
doi: 10.1007/s00205-019-01486-2
ec_funded: 1
external_id:
isi:
- '000511060200001'
file:
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checksum: f107e21b58f5930876f47144be37cf6c
content_type: application/pdf
creator: dernst
date_created: 2020-11-20T09:14:22Z
date_updated: 2020-11-20T09:14:22Z
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file_size: 1897571
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intvolume: ' 236'
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language:
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month: '05'
oa: 1
oa_version: Published Version
page: 967-1087
project:
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call_identifier: H2020
grant_number: '665385'
name: International IST Doctoral Program
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
publication: Archive for Rational Mechanics and Analysis
publication_identifier:
eissn:
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issn:
- '00039527'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
record:
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relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Weak–strong uniqueness for the Navier–Stokes equation for two fluids with surface
tension
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 236
year: '2020'
...
---
_id: '10012'
abstract:
- lang: eng
text: We prove that in the absence of topological changes, the notion of BV solutions
to planar multiphase mean curvature flow does not allow for a mechanism for (unphysical)
non-uniqueness. Our approach is based on the local structure of the energy landscape
near a classical evolution by mean curvature. Mean curvature flow being the gradient
flow of the surface energy functional, we develop a gradient-flow analogue of
the notion of calibrations. Just like the existence of a calibration guarantees
that one has reached a global minimum in the energy landscape, the existence of
a "gradient flow calibration" ensures that the route of steepest descent in the
energy landscape is unique and stable.
acknowledgement: Parts of the paper were written during the visit of the authors to
the Hausdorff Research Institute for Mathematics (HIM), University of Bonn, in the
framework of the trimester program “Evolution of Interfaces”. The support and the
hospitality of HIM are gratefully acknowledged. This project has received funding
from the European Union’s Horizon 2020 research and innovation programme under the
Marie Sklodowska-Curie Grant Agreement No. 665385.
article_number: '2003.05478'
article_processing_charge: No
author:
- first_name: Julian L
full_name: Fischer, Julian L
id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
last_name: Fischer
orcid: 0000-0002-0479-558X
- first_name: Sebastian
full_name: Hensel, Sebastian
id: 4D23B7DA-F248-11E8-B48F-1D18A9856A87
last_name: Hensel
orcid: 0000-0001-7252-8072
- first_name: Tim
full_name: Laux, Tim
last_name: Laux
- first_name: Thilo
full_name: Simon, Thilo
last_name: Simon
citation:
ama: 'Fischer JL, Hensel S, Laux T, Simon T. The local structure of the energy landscape
in multiphase mean curvature flow: weak-strong uniqueness and stability of evolutions.
arXiv.'
apa: 'Fischer, J. L., Hensel, S., Laux, T., & Simon, T. (n.d.). The local structure
of the energy landscape in multiphase mean curvature flow: weak-strong uniqueness
and stability of evolutions. arXiv.'
chicago: 'Fischer, Julian L, Sebastian Hensel, Tim Laux, and Thilo Simon. “The Local
Structure of the Energy Landscape in Multiphase Mean Curvature Flow: Weak-Strong
Uniqueness and Stability of Evolutions.” ArXiv, n.d.'
ieee: 'J. L. Fischer, S. Hensel, T. Laux, and T. Simon, “The local structure of
the energy landscape in multiphase mean curvature flow: weak-strong uniqueness
and stability of evolutions,” arXiv. .'
ista: 'Fischer JL, Hensel S, Laux T, Simon T. The local structure of the energy
landscape in multiphase mean curvature flow: weak-strong uniqueness and stability
of evolutions. arXiv, 2003.05478.'
mla: 'Fischer, Julian L., et al. “The Local Structure of the Energy Landscape in
Multiphase Mean Curvature Flow: Weak-Strong Uniqueness and Stability of Evolutions.”
ArXiv, 2003.05478.'
short: J.L. Fischer, S. Hensel, T. Laux, T. Simon, ArXiv (n.d.).
date_created: 2021-09-13T12:17:11Z
date_published: 2020-03-11T00:00:00Z
date_updated: 2023-09-07T13:30:45Z
day: '11'
department:
- _id: JuFi
ec_funded: 1
external_id:
arxiv:
- '2003.05478'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2003.05478
month: '03'
oa: 1
oa_version: Preprint
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '665385'
name: International IST Doctoral Program
publication: arXiv
publication_status: submitted
related_material:
record:
- id: '10007'
relation: dissertation_contains
status: public
status: public
title: 'The local structure of the energy landscape in multiphase mean curvature flow:
weak-strong uniqueness and stability of evolutions'
type: preprint
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2020'
...
---
_id: '8755'
abstract:
- lang: eng
text: 'The superconducting circuit community has recently discovered the promising
potential of superinductors. These circuit elements have a characteristic impedance
exceeding the resistance quantum RQ ≈ 6.45 kΩ which leads to a suppression of
ground state charge fluctuations. Applications include the realization of hardware
protected qubits for fault tolerant quantum computing, improved coupling to small
dipole moment objects and defining a new quantum metrology standard for the ampere.
In this work we refute the widespread notion that superinductors can only be implemented
based on kinetic inductance, i.e. using disordered superconductors or Josephson
junction arrays. We present modeling, fabrication and characterization of 104
planar aluminum coil resonators with a characteristic impedance up to 30.9 kΩ
at 5.6 GHz and a capacitance down to ≤ 1 fF, with lowloss and a power handling
reaching 108 intra-cavity photons. Geometric superinductors are free of uncontrolled
tunneling events and offer high reproducibility, linearity and the ability to
couple magnetically - properties that significantly broaden the scope of future
quantum circuits. '
acknowledged_ssus:
- _id: NanoFab
acknowledgement: "The authors acknowledge the support from I. Prieto and the IST Nanofabrication
Facility. This work was supported by IST Austria and a NOMIS foundation research
grant and the Austrian Science Fund (FWF) through BeyondC (F71). MP is the recipient
of a P¨ottinger scholarship at IST Austria. JMF acknowledges support from the European
Union’s Horizon 2020 research and innovation programs under grant agreement No 732894
(FET Proactive HOT), 862644 (FET Open QUARTET), and the European Research Council
under grant agreement\r\nnumber 758053 (ERC StG QUNNECT). "
article_number: '044055'
article_processing_charge: No
article_type: original
author:
- first_name: Matilda
full_name: Peruzzo, Matilda
id: 3F920B30-F248-11E8-B48F-1D18A9856A87
last_name: Peruzzo
orcid: 0000-0002-3415-4628
- first_name: Andrea
full_name: Trioni, Andrea
id: 42F71B44-F248-11E8-B48F-1D18A9856A87
last_name: Trioni
- first_name: Farid
full_name: Hassani, Farid
id: 2AED110C-F248-11E8-B48F-1D18A9856A87
last_name: Hassani
orcid: 0000-0001-6937-5773
- first_name: Martin
full_name: Zemlicka, Martin
id: 2DCF8DE6-F248-11E8-B48F-1D18A9856A87
last_name: Zemlicka
- first_name: Johannes M
full_name: Fink, Johannes M
id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
last_name: Fink
orcid: 0000-0001-8112-028X
citation:
ama: Peruzzo M, Trioni A, Hassani F, Zemlicka M, Fink JM. Surpassing the resistance
quantum with a geometric superinductor. Physical Review Applied. 2020;14(4).
doi:10.1103/PhysRevApplied.14.044055
apa: Peruzzo, M., Trioni, A., Hassani, F., Zemlicka, M., & Fink, J. M. (2020).
Surpassing the resistance quantum with a geometric superinductor. Physical
Review Applied. American Physical Society. https://doi.org/10.1103/PhysRevApplied.14.044055
chicago: Peruzzo, Matilda, Andrea Trioni, Farid Hassani, Martin Zemlicka, and Johannes
M Fink. “Surpassing the Resistance Quantum with a Geometric Superinductor.” Physical
Review Applied. American Physical Society, 2020. https://doi.org/10.1103/PhysRevApplied.14.044055.
ieee: M. Peruzzo, A. Trioni, F. Hassani, M. Zemlicka, and J. M. Fink, “Surpassing
the resistance quantum with a geometric superinductor,” Physical Review Applied,
vol. 14, no. 4. American Physical Society, 2020.
ista: Peruzzo M, Trioni A, Hassani F, Zemlicka M, Fink JM. 2020. Surpassing the
resistance quantum with a geometric superinductor. Physical Review Applied. 14(4),
044055.
mla: Peruzzo, Matilda, et al. “Surpassing the Resistance Quantum with a Geometric
Superinductor.” Physical Review Applied, vol. 14, no. 4, 044055, American
Physical Society, 2020, doi:10.1103/PhysRevApplied.14.044055.
short: M. Peruzzo, A. Trioni, F. Hassani, M. Zemlicka, J.M. Fink, Physical Review
Applied 14 (2020).
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title: Surpassing the resistance quantum with a geometric superinductor
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