---
_id: '7783'
abstract:
- lang: eng
text: The Drosophila Genetic Reference Panel (DGRP) serves as a valuable resource
to better understand the genetic landscapes underlying quantitative traits. However,
such DGRP studies have so far only focused on nuclear genetic variants. To address
this, we sequenced the mitochondrial genomes of >170 DGRP lines, identifying 229
variants including 21 indels and 7 frameshifts. We used our mitochondrial variation
data to identify 12 genetically distinct mitochondrial haplotypes, thus revealing
important population structure at the mitochondrial level. We further examined
whether this population structure was reflected on the nuclear genome by screening
for the presence of potential mito-nuclear genetic incompatibilities in the form
of significant genotype ratio distortions (GRDs) between mitochondrial and nuclear
variants. In total, we detected a remarkable 1,845 mito-nuclear GRDs, with the
highest enrichment observed in a 40 kb region around the gene Sex-lethal (Sxl).
Intriguingly, downstream phenotypic analyses did not uncover major fitness effects
associated with these GRDs, suggesting that a large number of mito-nuclear GRDs
may reflect population structure at the mitochondrial level rather than actual
genomic incompatibilities. This is further supported by the GRD landscape showing
particular large genomic regions associated with a single mitochondrial haplotype.
Next, we explored the functional relevance of the detected mitochondrial haplotypes
through an association analysis on a set of 259 assembled, non-correlating DGRP
phenotypes. We found multiple significant associations with stress- and metabolism-related
phenotypes, including food intake in males. We validated the latter observation
by reciprocal swapping of mitochondrial genomes from high food intake DGRP lines
to low food intake ones. In conclusion, our study uncovered important mitochondrial
population structure and haplotype-specific metabolic variation in the DGRP, thus
demonstrating the significance of incorporating mitochondrial haplotypes in geno-phenotype
relationship studies.
article_processing_charge: No
author:
- first_name: Roel P.J.
full_name: Bevers, Roel P.J.
last_name: Bevers
- first_name: Maria
full_name: Litovchenko, Maria
last_name: Litovchenko
- first_name: Adamandia
full_name: Kapopoulou, Adamandia
last_name: Kapopoulou
- first_name: Virginie S.
full_name: Braman, Virginie S.
last_name: Braman
- first_name: Matthew Richard
full_name: Robinson, Matthew Richard
id: E5D42276-F5DA-11E9-8E24-6303E6697425
last_name: Robinson
orcid: 0000-0001-8982-8813
- first_name: Johan
full_name: Auwerx, Johan
last_name: Auwerx
- first_name: Brian
full_name: Hollis, Brian
last_name: Hollis
- first_name: Bart
full_name: Deplancke, Bart
last_name: Deplancke
citation:
ama: Bevers RPJ, Litovchenko M, Kapopoulou A, et al. Extensive mitochondrial population
structure and haplotype-specific phenotypic variation in the Drosophila Genetic
Reference Panel. bioRxiv. 2018.
apa: Bevers, R. P. J., Litovchenko, M., Kapopoulou, A., Braman, V. S., Robinson,
M. R., Auwerx, J., … Deplancke, B. (2018). Extensive mitochondrial population
structure and haplotype-specific phenotypic variation in the Drosophila Genetic
Reference Panel. bioRxiv. Cold Spring Harbor Laboratory.
chicago: Bevers, Roel P.J., Maria Litovchenko, Adamandia Kapopoulou, Virginie S.
Braman, Matthew Richard Robinson, Johan Auwerx, Brian Hollis, and Bart Deplancke.
“Extensive Mitochondrial Population Structure and Haplotype-Specific Phenotypic
Variation in the Drosophila Genetic Reference Panel.” BioRxiv. Cold Spring
Harbor Laboratory, 2018.
ieee: R. P. J. Bevers et al., “Extensive mitochondrial population structure
and haplotype-specific phenotypic variation in the Drosophila Genetic Reference
Panel,” bioRxiv. Cold Spring Harbor Laboratory, 2018.
ista: Bevers RPJ, Litovchenko M, Kapopoulou A, Braman VS, Robinson MR, Auwerx J,
Hollis B, Deplancke B. 2018. Extensive mitochondrial population structure and
haplotype-specific phenotypic variation in the Drosophila Genetic Reference Panel.
bioRxiv, .
mla: Bevers, Roel P. J., et al. “Extensive Mitochondrial Population Structure and
Haplotype-Specific Phenotypic Variation in the Drosophila Genetic Reference Panel.”
BioRxiv, Cold Spring Harbor Laboratory, 2018.
short: R.P.J. Bevers, M. Litovchenko, A. Kapopoulou, V.S. Braman, M.R. Robinson,
J. Auwerx, B. Hollis, B. Deplancke, BioRxiv (2018).
date_created: 2020-04-30T13:09:37Z
date_published: 2018-11-09T00:00:00Z
date_updated: 2021-01-12T08:15:30Z
day: '09'
extern: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: 'https://doi.org/10.1101/466771 '
month: '11'
oa: 1
oa_version: Preprint
page: '49'
publication: bioRxiv
publication_status: published
publisher: Cold Spring Harbor Laboratory
status: public
title: Extensive mitochondrial population structure and haplotype-specific phenotypic
variation in the Drosophila Genetic Reference Panel
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '7812'
abstract:
- lang: eng
text: Deep neural networks (DNNs) continue to make significant advances, solving
tasks from image classification to translation or reinforcement learning. One
aspect of the field receiving considerable attention is efficiently executing
deep models in resource-constrained environments, such as mobile or embedded devices.
This paper focuses on this problem, and proposes two new compression methods,
which jointly leverage weight quantization and distillation of larger teacher
networks into smaller student networks. The first method we propose is called
quantized distillation and leverages distillation during the training process,
by incorporating distillation loss, expressed with respect to the teacher, into
the training of a student network whose weights are quantized to a limited set
of levels. The second method, differentiable quantization, optimizes the location
of quantization points through stochastic gradient descent, to better fit the
behavior of the teacher model. We validate both methods through experiments on
convolutional and recurrent architectures. We show that quantized shallow students
can reach similar accuracy levels to full-precision teacher models, while providing
order of magnitude compression, and inference speedup that is linear in the depth
reduction. In sum, our results enable DNNs for resource-constrained environments
to leverage architecture and accuracy advances developed on more powerful devices.
article_processing_charge: No
author:
- first_name: Antonio
full_name: Polino, Antonio
last_name: Polino
- first_name: Razvan
full_name: Pascanu, Razvan
last_name: Pascanu
- first_name: Dan-Adrian
full_name: Alistarh, Dan-Adrian
id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
last_name: Alistarh
orcid: 0000-0003-3650-940X
citation:
ama: 'Polino A, Pascanu R, Alistarh D-A. Model compression via distillation and
quantization. In: 6th International Conference on Learning Representations.
; 2018.'
apa: Polino, A., Pascanu, R., & Alistarh, D.-A. (2018). Model compression via
distillation and quantization. In 6th International Conference on Learning
Representations. Vancouver, Canada.
chicago: Polino, Antonio, Razvan Pascanu, and Dan-Adrian Alistarh. “Model Compression
via Distillation and Quantization.” In 6th International Conference on Learning
Representations, 2018.
ieee: A. Polino, R. Pascanu, and D.-A. Alistarh, “Model compression via distillation
and quantization,” in 6th International Conference on Learning Representations,
Vancouver, Canada, 2018.
ista: 'Polino A, Pascanu R, Alistarh D-A. 2018. Model compression via distillation
and quantization. 6th International Conference on Learning Representations. ICLR:
International Conference on Learning Representations.'
mla: Polino, Antonio, et al. “Model Compression via Distillation and Quantization.”
6th International Conference on Learning Representations, 2018.
short: A. Polino, R. Pascanu, D.-A. Alistarh, in:, 6th International Conference
on Learning Representations, 2018.
conference:
end_date: 2018-05-03
location: Vancouver, Canada
name: 'ICLR: International Conference on Learning Representations'
start_date: 2018-04-30
date_created: 2020-05-10T22:00:51Z
date_published: 2018-05-01T00:00:00Z
date_updated: 2023-02-23T13:18:41Z
day: '01'
ddc:
- '000'
department:
- _id: DaAl
external_id:
arxiv:
- '1802.05668'
file:
- access_level: open_access
checksum: a4336c167978e81891970e4e4517a8c3
content_type: application/pdf
creator: dernst
date_created: 2020-05-26T13:02:00Z
date_updated: 2020-07-14T12:48:03Z
file_id: '7894'
file_name: 2018_ICLR_Polino.pdf
file_size: 308339
relation: main_file
file_date_updated: 2020-07-14T12:48:03Z
has_accepted_license: '1'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
publication: 6th International Conference on Learning Representations
publication_status: published
quality_controlled: '1'
scopus_import: 1
status: public
title: Model compression via distillation and quantization
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '7983'
abstract:
- lang: ger
text: 'Feste Alkalicarbonate sind universelle Bestandteile von Passivierungsschichten
an Materialien für Interkalationsbatterien, übliche Nebenprodukte in Metall‐O2‐Batterien,
und es wird angenommen, dass sie sich reversibel in Metall‐O2 /CO2‐Zellen bilden
und zersetzen. In all diesen Kathoden zersetzt sich Li2CO3 zu CO2, sobald es Spannungen
>3.8 V vs. Li/Li+ ausgesetzt wird. Beachtenswert ist, dass keine O2‐Entwicklung
detektiert wird, wie gemäß der Zersetzungsreaktion 2 Li2CO3 → 4 Li+ + 4 e− + 2 CO2
+ O2 zu erwarten wäre. Deswegen war der Verbleib eines der O‐Atome ungeklärt und
wurde nicht identifizierten parasitären Reaktionen zugerechnet. Hier zeigen wir,
dass hochreaktiver Singulett‐Sauerstoff (1O2) bei der Oxidation von Li2CO3 in
einem aprotischen Elektrolyten gebildet und daher nicht als O2 freigesetzt wird.
Diese Ergebnisse haben weitreichende Auswirkungen auf die langfristige Zyklisierbarkeit
von Batterien: sie untermauern die Wichtigkeit, 1O2 in Metall‐O2‐Batterien zu
verhindern, stellen die Möglichkeit einer reversiblen Metall‐O2 /CO2‐Batterie
basierend auf einem Carbonat‐Entladeprodukt in Frage und helfen, Grenzflächenreaktivität
von Übergangsmetallkathoden mit Li2CO3‐Resten zu erklären.'
article_processing_charge: No
article_type: original
author:
- first_name: Nika
full_name: Mahne, Nika
last_name: Mahne
- first_name: Sara E.
full_name: Renfrew, Sara E.
last_name: Renfrew
- first_name: Bryan D.
full_name: McCloskey, Bryan D.
last_name: McCloskey
- first_name: Stefan Alexander
full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
citation:
ama: Mahne N, Renfrew SE, McCloskey BD, Freunberger SA. Elektrochemische Oxidation
von Lithiumcarbonat generiert Singulett-Sauerstoff. Angewandte Chemie.
2018;130(19):5627-5631. doi:10.1002/ange.201802277
apa: Mahne, N., Renfrew, S. E., McCloskey, B. D., & Freunberger, S. A. (2018).
Elektrochemische Oxidation von Lithiumcarbonat generiert Singulett-Sauerstoff.
Angewandte Chemie. Wiley. https://doi.org/10.1002/ange.201802277
chicago: Mahne, Nika, Sara E. Renfrew, Bryan D. McCloskey, and Stefan Alexander
Freunberger. “Elektrochemische Oxidation von Lithiumcarbonat Generiert Singulett-Sauerstoff.”
Angewandte Chemie. Wiley, 2018. https://doi.org/10.1002/ange.201802277.
ieee: N. Mahne, S. E. Renfrew, B. D. McCloskey, and S. A. Freunberger, “Elektrochemische
Oxidation von Lithiumcarbonat generiert Singulett-Sauerstoff,” Angewandte Chemie,
vol. 130, no. 19. Wiley, pp. 5627–5631, 2018.
ista: Mahne N, Renfrew SE, McCloskey BD, Freunberger SA. 2018. Elektrochemische
Oxidation von Lithiumcarbonat generiert Singulett-Sauerstoff. Angewandte Chemie.
130(19), 5627–5631.
mla: Mahne, Nika, et al. “Elektrochemische Oxidation von Lithiumcarbonat Generiert
Singulett-Sauerstoff.” Angewandte Chemie, vol. 130, no. 19, Wiley, 2018,
pp. 5627–31, doi:10.1002/ange.201802277.
short: N. Mahne, S.E. Renfrew, B.D. McCloskey, S.A. Freunberger, Angewandte Chemie
130 (2018) 5627–5631.
date_created: 2020-06-19T08:33:24Z
date_published: 2018-05-04T00:00:00Z
date_updated: 2021-01-12T08:16:21Z
day: '04'
ddc:
- '540'
doi: 10.1002/ange.201802277
extern: '1'
file:
- access_level: open_access
checksum: 81506e0f7079e1e3591f3cd9f626bf67
content_type: application/pdf
creator: dernst
date_created: 2020-06-19T11:58:06Z
date_updated: 2020-07-14T12:48:06Z
file_id: '7988'
file_name: 2018_AngChemieDT_Mahne.pdf
file_size: 674789
relation: main_file
file_date_updated: 2020-07-14T12:48:06Z
has_accepted_license: '1'
intvolume: ' 130'
issue: '19'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/4.0/
month: '05'
oa: 1
oa_version: Published Version
page: 5627-5631
publication: Angewandte Chemie
publication_identifier:
issn:
- 0044-8249
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: Elektrochemische Oxidation von Lithiumcarbonat generiert Singulett-Sauerstoff
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 130
year: '2018'
...
---
_id: '8015'
abstract:
- lang: eng
text: 'The neural code of cortical processing remains uncracked; however, it must
necessarily rely on faithful signal propagation between cortical areas. In this
issue of Neuron, Joglekar et al. (2018) show that strong inter-areal excitation
balanced by local inhibition can enable reliable signal propagation in data-constrained
network models of macaque cortex. '
article_processing_charge: No
article_type: original
author:
- first_name: Jake P.
full_name: Stroud, Jake P.
last_name: Stroud
- first_name: Tim P
full_name: Vogels, Tim P
id: CB6FF8D2-008F-11EA-8E08-2637E6697425
last_name: Vogels
orcid: 0000-0003-3295-6181
citation:
ama: 'Stroud JP, Vogels TP. Cortical signal propagation: Balance, amplify, transmit.
Neuron. 2018;98(1):8-9. doi:10.1016/j.neuron.2018.03.028'
apa: 'Stroud, J. P., & Vogels, T. P. (2018). Cortical signal propagation: Balance,
amplify, transmit. Neuron. Elsevier. https://doi.org/10.1016/j.neuron.2018.03.028'
chicago: 'Stroud, Jake P., and Tim P Vogels. “Cortical Signal Propagation: Balance,
Amplify, Transmit.” Neuron. Elsevier, 2018. https://doi.org/10.1016/j.neuron.2018.03.028.'
ieee: 'J. P. Stroud and T. P. Vogels, “Cortical signal propagation: Balance, amplify,
transmit,” Neuron, vol. 98, no. 1. Elsevier, pp. 8–9, 2018.'
ista: 'Stroud JP, Vogels TP. 2018. Cortical signal propagation: Balance, amplify,
transmit. Neuron. 98(1), 8–9.'
mla: 'Stroud, Jake P., and Tim P. Vogels. “Cortical Signal Propagation: Balance,
Amplify, Transmit.” Neuron, vol. 98, no. 1, Elsevier, 2018, pp. 8–9, doi:10.1016/j.neuron.2018.03.028.'
short: J.P. Stroud, T.P. Vogels, Neuron 98 (2018) 8–9.
date_created: 2020-06-25T12:53:39Z
date_published: 2018-04-04T00:00:00Z
date_updated: 2021-01-12T08:16:31Z
day: '04'
doi: 10.1016/j.neuron.2018.03.028
extern: '1'
external_id:
pmid:
- '29621492'
intvolume: ' 98'
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.neuron.2018.03.028
month: '04'
oa: 1
oa_version: Published Version
page: 8-9
pmid: 1
publication: Neuron
publication_identifier:
issn:
- 0896-6273
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: 'Cortical signal propagation: Balance, amplify, transmit'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 98
year: '2018'
...
---
_id: '8073'
abstract:
- lang: eng
text: Motor cortex (M1) exhibits a rich repertoire of neuronal activities to support
the generation of complex movements. Although recent neuronal-network models capture
many qualitative aspects of M1 dynamics, they can generate only a few distinct
movements. Additionally, it is unclear how M1 efficiently controls movements over
a wide range of shapes and speeds. We demonstrate that modulation of neuronal
input–output gains in recurrent neuronal-network models with a fixed architecture
can dramatically reorganize neuronal activity and thus downstream muscle outputs.
Consistent with the observation of diffuse neuromodulatory projections to M1,
a relatively small number of modulatory control units provide sufficient flexibility
to adjust high-dimensional network activity using a simple reward-based learning
rule. Furthermore, it is possible to assemble novel movements from previously
learned primitives, and one can separately change movement speed while preserving
movement shape. Our results provide a new perspective on the role of modulatory
systems in controlling recurrent cortical activity.
article_processing_charge: No
article_type: original
author:
- first_name: Jake P.
full_name: Stroud, Jake P.
last_name: Stroud
- first_name: Mason A.
full_name: Porter, Mason A.
last_name: Porter
- first_name: Guillaume
full_name: Hennequin, Guillaume
last_name: Hennequin
- first_name: Tim P
full_name: Vogels, Tim P
id: CB6FF8D2-008F-11EA-8E08-2637E6697425
last_name: Vogels
orcid: 0000-0003-3295-6181
citation:
ama: Stroud JP, Porter MA, Hennequin G, Vogels TP. Motor primitives in space and
time via targeted gain modulation in cortical networks. Nature Neuroscience.
2018;21(12):1774-1783. doi:10.1038/s41593-018-0276-0
apa: Stroud, J. P., Porter, M. A., Hennequin, G., & Vogels, T. P. (2018). Motor
primitives in space and time via targeted gain modulation in cortical networks.
Nature Neuroscience. Springer Nature. https://doi.org/10.1038/s41593-018-0276-0
chicago: Stroud, Jake P., Mason A. Porter, Guillaume Hennequin, and Tim P Vogels.
“Motor Primitives in Space and Time via Targeted Gain Modulation in Cortical Networks.”
Nature Neuroscience. Springer Nature, 2018. https://doi.org/10.1038/s41593-018-0276-0.
ieee: J. P. Stroud, M. A. Porter, G. Hennequin, and T. P. Vogels, “Motor primitives
in space and time via targeted gain modulation in cortical networks,” Nature
Neuroscience, vol. 21, no. 12. Springer Nature, pp. 1774–1783, 2018.
ista: Stroud JP, Porter MA, Hennequin G, Vogels TP. 2018. Motor primitives in space
and time via targeted gain modulation in cortical networks. Nature Neuroscience.
21(12), 1774–1783.
mla: Stroud, Jake P., et al. “Motor Primitives in Space and Time via Targeted Gain
Modulation in Cortical Networks.” Nature Neuroscience, vol. 21, no. 12,
Springer Nature, 2018, pp. 1774–83, doi:10.1038/s41593-018-0276-0.
short: J.P. Stroud, M.A. Porter, G. Hennequin, T.P. Vogels, Nature Neuroscience
21 (2018) 1774–1783.
date_created: 2020-06-30T13:18:02Z
date_published: 2018-12-01T00:00:00Z
date_updated: 2021-01-12T08:16:46Z
day: '01'
doi: 10.1038/s41593-018-0276-0
extern: '1'
external_id:
pmid:
- '30482949'
intvolume: ' 21'
issue: '12'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6276991/
month: '12'
oa: 1
oa_version: Submitted Version
page: 1774-1783
pmid: 1
publication: Nature Neuroscience
publication_identifier:
issn:
- 1097-6256
- 1546-1726
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
link:
- relation: erratum
url: https://doi.org/10.1038/s41593-018-0307-x
status: public
title: Motor primitives in space and time via targeted gain modulation in cortical
networks
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 21
year: '2018'
...
---
_id: '8231'
article_processing_charge: No
article_type: letter_note
author:
- first_name: Judit
full_name: Fazekas-Singer, Judit
id: 36432834-F248-11E8-B48F-1D18A9856A87
last_name: Fazekas-Singer
orcid: 0000-0002-8777-3502
- first_name: Josef
full_name: Singer, Josef
last_name: Singer
- first_name: Kristina M.
full_name: Ilieva, Kristina M.
last_name: Ilieva
- first_name: Miroslawa
full_name: Matz, Miroslawa
last_name: Matz
- first_name: Ina
full_name: Herrmann, Ina
last_name: Herrmann
- first_name: Edzard
full_name: Spillner, Edzard
last_name: Spillner
- first_name: Sophia N.
full_name: Karagiannis, Sophia N.
last_name: Karagiannis
- first_name: Erika
full_name: Jensen-Jarolim, Erika
last_name: Jensen-Jarolim
citation:
ama: 'Singer J, Singer J, Ilieva KM, et al. AllergoOncology: Generating a canine
anticancer IgE against the epidermal growth factor receptor. Journal of Allergy
and Clinical Immunology. 2018;142(3):973-976.e11. doi:10.1016/j.jaci.2018.04.021'
apa: 'Singer, J., Singer, J., Ilieva, K. M., Matz, M., Herrmann, I., Spillner, E.,
… Jensen-Jarolim, E. (2018). AllergoOncology: Generating a canine anticancer IgE
against the epidermal growth factor receptor. Journal of Allergy and Clinical
Immunology. Elsevier. https://doi.org/10.1016/j.jaci.2018.04.021'
chicago: 'Singer, Judit, Josef Singer, Kristina M. Ilieva, Miroslawa Matz, Ina Herrmann,
Edzard Spillner, Sophia N. Karagiannis, and Erika Jensen-Jarolim. “AllergoOncology:
Generating a Canine Anticancer IgE against the Epidermal Growth Factor Receptor.”
Journal of Allergy and Clinical Immunology. Elsevier, 2018. https://doi.org/10.1016/j.jaci.2018.04.021.'
ieee: 'J. Singer et al., “AllergoOncology: Generating a canine anticancer
IgE against the epidermal growth factor receptor,” Journal of Allergy and Clinical
Immunology, vol. 142, no. 3. Elsevier, p. 973–976.e11, 2018.'
ista: 'Singer J, Singer J, Ilieva KM, Matz M, Herrmann I, Spillner E, Karagiannis
SN, Jensen-Jarolim E. 2018. AllergoOncology: Generating a canine anticancer IgE
against the epidermal growth factor receptor. Journal of Allergy and Clinical
Immunology. 142(3), 973–976.e11.'
mla: 'Singer, Judit, et al. “AllergoOncology: Generating a Canine Anticancer IgE
against the Epidermal Growth Factor Receptor.” Journal of Allergy and Clinical
Immunology, vol. 142, no. 3, Elsevier, 2018, p. 973–976.e11, doi:10.1016/j.jaci.2018.04.021.'
short: J. Singer, J. Singer, K.M. Ilieva, M. Matz, I. Herrmann, E. Spillner, S.N.
Karagiannis, E. Jensen-Jarolim, Journal of Allergy and Clinical Immunology 142
(2018) 973–976.e11.
date_created: 2020-08-10T11:51:36Z
date_published: 2018-09-01T00:00:00Z
date_updated: 2021-01-12T08:17:37Z
day: '01'
doi: 10.1016/j.jaci.2018.04.021
extern: '1'
intvolume: ' 142'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.jaci.2018.04.021
month: '09'
oa: 1
oa_version: Published Version
page: 973-976.e11
publication: Journal of Allergy and Clinical Immunology
publication_identifier:
issn:
- 0091-6749
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: 'AllergoOncology: Generating a canine anticancer IgE against the epidermal
growth factor receptor'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 142
year: '2018'
...
---
_id: '8234'
abstract:
- lang: eng
text: Molecular imaging probes such as PET-tracers have the potential to improve
the accuracy of tumor characterization by directly visualizing the biochemical
situation. Thus, molecular changes can be detected early before morphological
manifestation. The A3 adenosine receptor (A3AR) is described to be highly expressed
in colon cancer cell lines and human colorectal cancer (CRC), suggesting this
receptor as a tumor marker. The aim of this preclinical study was the evaluation
of FE@SUPPY as a PET-tracer for CRC using in vitro imaging and in vivo PET imaging.
First, affinity and selectivity of FE@SUPPY and its metabolites were determined,
proving the favorable binding profile of FE@SUPPY. The human adenocarcinoma cell
line HT-29 was characterized regarding its hA3AR expression and was subsequently
chosen as tumor graft. Promising results regarding the potential of FE@SUPPY as
a PET-tracer for CRC imaging were obtained by autoradiography as ≥2.3-fold higher
accumulation of FE@SUPPY was found in CRC tissue compared to adjacent healthy
colon tissue from the same patient. Nevertheless, first in vivo studies using
HT-29 xenografts showed insufficient tumor uptake due to (1) poor conservation
of target expression in xenografts and (2) unfavorable pharmacokinetics of FE@SUPPY
in mice. We therefore conclude that HT-29 xenografts are not adequate to visualize
hA3ARs using FE@SUPPY.
article_number: '1269830'
article_processing_charge: No
article_type: original
author:
- first_name: T.
full_name: Balber, T.
last_name: Balber
- first_name: Judit
full_name: Singer, Judit
id: 36432834-F248-11E8-B48F-1D18A9856A87
last_name: Singer
orcid: 0000-0002-8777-3502
- first_name: N.
full_name: Berroterán-Infante, N.
last_name: Berroterán-Infante
- first_name: M.
full_name: Dumanic, M.
last_name: Dumanic
- first_name: L.
full_name: Fetty, L.
last_name: Fetty
- first_name: J.
full_name: Fazekas-Singer, J.
last_name: Fazekas-Singer
orcid: 0000-0002-8777-3502
- first_name: C.
full_name: Vraka, C.
last_name: Vraka
- first_name: L.
full_name: Nics, L.
last_name: Nics
- first_name: M.
full_name: Bergmann, M.
last_name: Bergmann
- first_name: K.
full_name: Pallitsch, K.
last_name: Pallitsch
- first_name: H.
full_name: Spreitzer, H.
last_name: Spreitzer
- first_name: W.
full_name: Wadsak, W.
last_name: Wadsak
orcid: 0000-0003-4479-8053
- first_name: M.
full_name: Hacker, M.
last_name: Hacker
- first_name: E.
full_name: Jensen-Jarolim, E.
last_name: Jensen-Jarolim
- first_name: H.
full_name: Viernstein, H.
last_name: Viernstein
- first_name: M.
full_name: Mitterhauser, M.
last_name: Mitterhauser
orcid: 0000-0003-3173-5272
citation:
ama: 'Balber T, Singer J, Berroterán-Infante N, et al. Preclinical in vitro and
in vivo evaluation of [18F]FE@SUPPY for cancer PET imaging: Limitations of a xenograft
model for colorectal cancer. Contrast Media & Molecular Imaging. 2018;2018.
doi:10.1155/2018/1269830'
apa: 'Balber, T., Singer, J., Berroterán-Infante, N., Dumanic, M., Fetty, L., Fazekas-Singer,
J., … Mitterhauser, M. (2018). Preclinical in vitro and in vivo evaluation of
[18F]FE@SUPPY for cancer PET imaging: Limitations of a xenograft model for colorectal
cancer. Contrast Media & Molecular Imaging. Hindawi. https://doi.org/10.1155/2018/1269830'
chicago: 'Balber, T., Judit Singer, N. Berroterán-Infante, M. Dumanic, L. Fetty,
J. Fazekas-Singer, C. Vraka, et al. “Preclinical in Vitro and in Vivo Evaluation
of [18F]FE@SUPPY for Cancer PET Imaging: Limitations of a Xenograft Model for
Colorectal Cancer.” Contrast Media & Molecular Imaging. Hindawi, 2018.
https://doi.org/10.1155/2018/1269830.'
ieee: 'T. Balber et al., “Preclinical in vitro and in vivo evaluation of
[18F]FE@SUPPY for cancer PET imaging: Limitations of a xenograft model for colorectal
cancer,” Contrast Media & Molecular Imaging, vol. 2018. Hindawi, 2018.'
ista: 'Balber T, Singer J, Berroterán-Infante N, Dumanic M, Fetty L, Fazekas-Singer
J, Vraka C, Nics L, Bergmann M, Pallitsch K, Spreitzer H, Wadsak W, Hacker M,
Jensen-Jarolim E, Viernstein H, Mitterhauser M. 2018. Preclinical in vitro and
in vivo evaluation of [18F]FE@SUPPY for cancer PET imaging: Limitations of a xenograft
model for colorectal cancer. Contrast Media & Molecular Imaging. 2018, 1269830.'
mla: 'Balber, T., et al. “Preclinical in Vitro and in Vivo Evaluation of [18F]FE@SUPPY
for Cancer PET Imaging: Limitations of a Xenograft Model for Colorectal Cancer.”
Contrast Media & Molecular Imaging, vol. 2018, 1269830, Hindawi, 2018,
doi:10.1155/2018/1269830.'
short: T. Balber, J. Singer, N. Berroterán-Infante, M. Dumanic, L. Fetty, J. Fazekas-Singer,
C. Vraka, L. Nics, M. Bergmann, K. Pallitsch, H. Spreitzer, W. Wadsak, M. Hacker,
E. Jensen-Jarolim, H. Viernstein, M. Mitterhauser, Contrast Media & Molecular
Imaging 2018 (2018).
date_created: 2020-08-10T11:53:07Z
date_published: 2018-02-13T00:00:00Z
date_updated: 2021-01-12T08:17:38Z
day: '13'
doi: 10.1155/2018/1269830
extern: '1'
intvolume: ' 2018'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1155/2018/1269830
month: '02'
oa: 1
oa_version: Published Version
publication: Contrast Media & Molecular Imaging
publication_identifier:
issn:
- 1555-4309
- 1555-4317
publication_status: published
publisher: Hindawi
quality_controlled: '1'
status: public
title: 'Preclinical in vitro and in vivo evaluation of [18F]FE@SUPPY for cancer PET
imaging: Limitations of a xenograft model for colorectal cancer'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2018
year: '2018'
...
---
_id: '8232'
abstract:
- lang: eng
text: 'Anti-epidermal growth factor receptor (EGFR) antibody therapy is used in
EGFR expressing cancers including lung, colon, head and neck, and bladder cancers,
however results have been modest. Near infrared photoimmunotherapy (NIR-PIT) is
a highly selective tumor treatment that employs an antibody-photo-absorber conjugate
which is activated by NIR light. NIR-PIT is in clinical trials in patients with
recurrent head and neck cancers using cetuximab-IR700 as the conjugate. However,
its use has otherwise been restricted to mouse models. This is an effort to explore
larger animal models with NIR-PIT. We describe the use of a recombinant canine
anti-EGFR monoclonal antibody (mAb), can225IgG, conjugated to the photo-absorber,
IR700DX, in three EGFR expressing canine transitional cell carcinoma (TCC) cell
lines as a prelude to possible canine clinical studies. Can225-IR700 conjugate
showed specific binding and cell-specific killing after NIR-PIT on EGFR expressing
cells in vitro. In the in vivo study, can225-IR700 conjugate demonstrated accumulation
of the fluorescent conjugate with high tumor-to-background ratio. Tumor-bearing
mice were separated into 4 groups: (1) no treatment; (2) 100 μg of can225-IR700
i.v. only; (3) NIR light exposure only; (4) 100 μg of can225-IR700 i.v., NIR light
exposure. Tumor growth was significantly inhibited by NIR-PIT treatment compared
with the other groups (p < 0.001), and significantly prolonged survival was achieved
(p < 0.001 vs. other groups) in the treatment groups. In conclusion, NIR-PIT with
can225-IR700 is a promising treatment for canine EGFR-expressing cancers, including
invasive transitional cell carcinoma in pet dogs, that could provide a pathway
to translation to humans.'
article_processing_charge: No
article_type: original
author:
- first_name: Tadanobu
full_name: Nagaya, Tadanobu
last_name: Nagaya
- first_name: Shuhei
full_name: Okuyama, Shuhei
last_name: Okuyama
- first_name: Fusa
full_name: Ogata, Fusa
last_name: Ogata
- first_name: Yasuhiro
full_name: Maruoka, Yasuhiro
last_name: Maruoka
- first_name: Deborah W.
full_name: Knapp, Deborah W.
last_name: Knapp
- first_name: Sophia N.
full_name: Karagiannis, Sophia N.
last_name: Karagiannis
- first_name: Judit
full_name: Fazekas-Singer, Judit
id: 36432834-F248-11E8-B48F-1D18A9856A87
last_name: Fazekas-Singer
orcid: 0000-0002-8777-3502
- first_name: Peter L.
full_name: Choyke, Peter L.
last_name: Choyke
- first_name: Amy K.
full_name: LeBlanc, Amy K.
last_name: LeBlanc
- first_name: Erika
full_name: Jensen-Jarolim, Erika
last_name: Jensen-Jarolim
- first_name: Hisataka
full_name: Kobayashi, Hisataka
last_name: Kobayashi
citation:
ama: Nagaya T, Okuyama S, Ogata F, et al. Near infrared photoimmunotherapy targeting
bladder cancer with a canine anti-epidermal growth factor receptor (EGFR) antibody.
Oncotarget. 2018;9:19026-19038. doi:10.18632/oncotarget.24876
apa: Nagaya, T., Okuyama, S., Ogata, F., Maruoka, Y., Knapp, D. W., Karagiannis,
S. N., … Kobayashi, H. (2018). Near infrared photoimmunotherapy targeting bladder
cancer with a canine anti-epidermal growth factor receptor (EGFR) antibody. Oncotarget.
Impact Journals. https://doi.org/10.18632/oncotarget.24876
chicago: Nagaya, Tadanobu, Shuhei Okuyama, Fusa Ogata, Yasuhiro Maruoka, Deborah
W. Knapp, Sophia N. Karagiannis, Judit Singer, et al. “Near Infrared Photoimmunotherapy
Targeting Bladder Cancer with a Canine Anti-Epidermal Growth Factor Receptor (EGFR)
Antibody.” Oncotarget. Impact Journals, 2018. https://doi.org/10.18632/oncotarget.24876.
ieee: T. Nagaya et al., “Near infrared photoimmunotherapy targeting bladder
cancer with a canine anti-epidermal growth factor receptor (EGFR) antibody,” Oncotarget,
vol. 9. Impact Journals, pp. 19026–19038, 2018.
ista: Nagaya T, Okuyama S, Ogata F, Maruoka Y, Knapp DW, Karagiannis SN, Singer
J, Choyke PL, LeBlanc AK, Jensen-Jarolim E, Kobayashi H. 2018. Near infrared photoimmunotherapy
targeting bladder cancer with a canine anti-epidermal growth factor receptor (EGFR)
antibody. Oncotarget. 9, 19026–19038.
mla: Nagaya, Tadanobu, et al. “Near Infrared Photoimmunotherapy Targeting Bladder
Cancer with a Canine Anti-Epidermal Growth Factor Receptor (EGFR) Antibody.” Oncotarget,
vol. 9, Impact Journals, 2018, pp. 19026–38, doi:10.18632/oncotarget.24876.
short: T. Nagaya, S. Okuyama, F. Ogata, Y. Maruoka, D.W. Knapp, S.N. Karagiannis,
J. Singer, P.L. Choyke, A.K. LeBlanc, E. Jensen-Jarolim, H. Kobayashi, Oncotarget
9 (2018) 19026–19038.
date_created: 2020-08-10T11:52:54Z
date_published: 2018-04-10T00:00:00Z
date_updated: 2021-01-12T08:17:37Z
day: '10'
doi: 10.18632/oncotarget.24876
extern: '1'
intvolume: ' 9'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.18632/oncotarget.24876
month: '04'
oa: 1
oa_version: Published Version
page: 19026-19038
publication: Oncotarget
publication_identifier:
eissn:
- 1949-2553
publication_status: published
publisher: Impact Journals
quality_controlled: '1'
status: public
title: Near infrared photoimmunotherapy targeting bladder cancer with a canine anti-epidermal
growth factor receptor (EGFR) antibody
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2018'
...
---
_id: '8233'
abstract:
- lang: eng
text: The M2a subtype of macrophages plays an important role in human immunoglobulin
E (IgE-mediated allergies) and other Th2 type immune reactions. In contrast, very
little is known about these cells in the dog. Here we describe an in vitro method
to activate canine histiocytic DH82 cells and primary canine monocyte-derived
macrophages (MDMs) toward the M2a macrophages using human cytokines. For a side-by-side
comparison, we compared the canine cells to human MDMs, and the human monocytic
cell line U937 activated towards M1 and M2a cells on the cellular and molecular
level. In analogy to activated human M2a cells, canine M2a, differentiated from
both DH82 and MDMs, showed an increase in CD206 surface receptor expression compared
to M1. Interestingly, canine M2a, but not M1 derived from MDM, upregulated the
high-affinity IgE receptor (FcεRI). Transcription levels of M2a-associated genes
(IL10, CCL22, TGFβ, CD163) showed a diverse pattern between the human and dog
species, whereas M1 genes (IDO1, CXCL11, IL6, TNF-α) were similarly upregulated
in canine and human M1 cells (cell lines and MDMs). We suggest that our novel
in vitro method will be suitable in comparative allergology studies focussing
on macrophages.
article_processing_charge: No
article_type: original
author:
- first_name: Ina
full_name: Herrmann, Ina
last_name: Herrmann
- first_name: Jelena
full_name: Gotovina, Jelena
last_name: Gotovina
- first_name: Judit
full_name: Fazekas-Singer, Judit
id: 36432834-F248-11E8-B48F-1D18A9856A87
last_name: Fazekas-Singer
orcid: 0000-0002-8777-3502
- first_name: Michael B.
full_name: Fischer, Michael B.
last_name: Fischer
- first_name: Karin
full_name: Hufnagl, Karin
last_name: Hufnagl
- first_name: Rodolfo
full_name: Bianchini, Rodolfo
last_name: Bianchini
- first_name: Erika
full_name: Jensen-Jarolim, Erika
last_name: Jensen-Jarolim
citation:
ama: Herrmann I, Gotovina J, Singer J, et al. Canine macrophages can like human
macrophages be in vitro activated toward the M2a subtype relevant in allergy.
Developmental & Comparative Immunology. 2018;82(5):118-127. doi:10.1016/j.dci.2018.01.005
apa: Herrmann, I., Gotovina, J., Singer, J., Fischer, M. B., Hufnagl, K., Bianchini,
R., & Jensen-Jarolim, E. (2018). Canine macrophages can like human macrophages
be in vitro activated toward the M2a subtype relevant in allergy. Developmental
& Comparative Immunology. Elsevier. https://doi.org/10.1016/j.dci.2018.01.005
chicago: Herrmann, Ina, Jelena Gotovina, Judit Singer, Michael B. Fischer, Karin
Hufnagl, Rodolfo Bianchini, and Erika Jensen-Jarolim. “Canine Macrophages Can
like Human Macrophages Be in Vitro Activated toward the M2a Subtype Relevant in
Allergy.” Developmental & Comparative Immunology. Elsevier, 2018. https://doi.org/10.1016/j.dci.2018.01.005.
ieee: I. Herrmann et al., “Canine macrophages can like human macrophages
be in vitro activated toward the M2a subtype relevant in allergy,” Developmental
& Comparative Immunology, vol. 82, no. 5. Elsevier, pp. 118–127, 2018.
ista: Herrmann I, Gotovina J, Singer J, Fischer MB, Hufnagl K, Bianchini R, Jensen-Jarolim
E. 2018. Canine macrophages can like human macrophages be in vitro activated toward
the M2a subtype relevant in allergy. Developmental & Comparative Immunology.
82(5), 118–127.
mla: Herrmann, Ina, et al. “Canine Macrophages Can like Human Macrophages Be in Vitro
Activated toward the M2a Subtype Relevant in Allergy.” Developmental &
Comparative Immunology, vol. 82, no. 5, Elsevier, 2018, pp. 118–27, doi:10.1016/j.dci.2018.01.005.
short: I. Herrmann, J. Gotovina, J. Singer, M.B. Fischer, K. Hufnagl, R. Bianchini,
E. Jensen-Jarolim, Developmental & Comparative Immunology 82 (2018) 118–127.
date_created: 2020-08-10T11:53:01Z
date_published: 2018-05-01T00:00:00Z
date_updated: 2021-01-12T08:17:38Z
day: '01'
doi: 10.1016/j.dci.2018.01.005
extern: '1'
intvolume: ' 82'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.dci.2018.01.005
month: '05'
oa: 1
oa_version: Published Version
page: 118-127
publication: Developmental & Comparative Immunology
publication_identifier:
issn:
- 0145-305X
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Canine macrophages can like human macrophages be in vitro activated toward
the M2a subtype relevant in allergy
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 82
year: '2018'
...
---
_id: '8262'
abstract:
- lang: eng
text: "Background: The genus Burkholderia consists of species that occupy remarkably
diverse ecological niches. Its best known members are important pathogens, B.
mallei and B. pseudomallei, which cause glanders and melioidosis, respectively.
Burkholderia genomes are unusual due to their multichromosomal organization, generally
comprised of 2-3 chromosomes.\r\n\r\nResults: We performed integrated genomic
analysis of 127 Burkholderia strains. The pan-genome is open with the saturation
to be reached between 86,000 and 88,000 genes. The reconstructed rearrangements
indicate a strong avoidance of intra-replichore inversions that is likely caused
by selection against the transfer of large groups of genes between the leading
and the lagging strands. Translocated genes also tend to retain their position
in the leading or the lagging strand, and this selection is stronger for large
syntenies. Integrated reconstruction of chromosome rearrangements in the context
of strains phylogeny reveals parallel rearrangements that may indicate inversion-based
phase variation and integration of new genomic islands. In particular, we detected
parallel inversions in the second chromosomes of B. pseudomallei with breakpoints
formed by genes encoding membrane components of multidrug resistance complex,
that may be linked to a phase variation mechanism. Two genomic islands, spreading
horizontally between chromosomes, were detected in the B. cepacia group.\r\n\r\nConclusions:
This study demonstrates the power of integrated analysis of pan-genomes, chromosome
rearrangements, and selection regimes. Non-random inversion patterns indicate
selective pressure, inversions are particularly frequent in a recent pathogen
B. mallei, and, together with periods of positive selection at other branches,
may indicate adaptation to new niches. One such adaptation could be a possible
phase variation mechanism in B. pseudomallei."
article_number: '965'
article_processing_charge: No
article_type: original
author:
- first_name: Olga
full_name: Bochkareva, Olga
id: C4558D3C-6102-11E9-A62E-F418E6697425
last_name: Bochkareva
orcid: 0000-0003-1006-6639
- first_name: Elena V.
full_name: Moroz, Elena V.
last_name: Moroz
- first_name: Iakov I.
full_name: Davydov, Iakov I.
last_name: Davydov
- first_name: Mikhail S.
full_name: Gelfand, Mikhail S.
last_name: Gelfand
citation:
ama: Bochkareva O, Moroz EV, Davydov II, Gelfand MS. Genome rearrangements and selection
in multi-chromosome bacteria Burkholderia spp. BMC Genomics. 2018;19. doi:10.1186/s12864-018-5245-1
apa: Bochkareva, O., Moroz, E. V., Davydov, I. I., & Gelfand, M. S. (2018).
Genome rearrangements and selection in multi-chromosome bacteria Burkholderia
spp. BMC Genomics. Springer Nature. https://doi.org/10.1186/s12864-018-5245-1
chicago: Bochkareva, Olga, Elena V. Moroz, Iakov I. Davydov, and Mikhail S. Gelfand.
“Genome Rearrangements and Selection in Multi-Chromosome Bacteria Burkholderia
Spp.” BMC Genomics. Springer Nature, 2018. https://doi.org/10.1186/s12864-018-5245-1.
ieee: O. Bochkareva, E. V. Moroz, I. I. Davydov, and M. S. Gelfand, “Genome rearrangements
and selection in multi-chromosome bacteria Burkholderia spp.,” BMC Genomics,
vol. 19. Springer Nature, 2018.
ista: Bochkareva O, Moroz EV, Davydov II, Gelfand MS. 2018. Genome rearrangements
and selection in multi-chromosome bacteria Burkholderia spp. BMC Genomics. 19,
965.
mla: Bochkareva, Olga, et al. “Genome Rearrangements and Selection in Multi-Chromosome
Bacteria Burkholderia Spp.” BMC Genomics, vol. 19, 965, Springer Nature,
2018, doi:10.1186/s12864-018-5245-1.
short: O. Bochkareva, E.V. Moroz, I.I. Davydov, M.S. Gelfand, BMC Genomics 19 (2018).
date_created: 2020-08-15T11:02:08Z
date_published: 2018-12-27T00:00:00Z
date_updated: 2023-02-23T13:28:52Z
day: '27'
doi: 10.1186/s12864-018-5245-1
extern: '1'
intvolume: ' 19'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1186/s12864-018-5245-1
month: '12'
oa: 1
oa_version: Published Version
publication: BMC Genomics
publication_identifier:
issn:
- 1471-2164
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Genome rearrangements and selection in multi-chromosome bacteria Burkholderia
spp.
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 19
year: '2018'
...
---
_id: '8265'
abstract:
- lang: eng
text: Genome rearrangements have played an important role in the evolution of Yersinia
pestis from its progenitor Yersinia pseudotuberculosis. Traditional phylogenetic
trees for Y. pestis based on sequence comparison have short internal branches
and low bootstrap supports as only a small number of nucleotide substitutions
have occurred. On the other hand, even a small number of genome rearrangements
may resolve topological ambiguities in a phylogenetic tree. We reconstructed phylogenetic
trees based on genome rearrangements using several popular approaches such as
Maximum likelihood for Gene Order and the Bayesian model of genome rearrangements
by inversions. We also reconciled phylogenetic trees for each of the three CRISPR
loci to obtain an integrated scenario of the CRISPR cassette evolution. Analysis
of contradictions between the obtained evolutionary trees yielded numerous parallel
inversions and gain/loss events. Our data indicate that an integrated analysis
of sequence-based and inversion-based trees enhances the resolution of phylogenetic
reconstruction. In contrast, reconstructions of strain relationships based on
solely CRISPR loci may not be reliable, as the history is obscured by large deletions,
obliterating the order of spacer gains. Similarly, numerous parallel gene losses
preclude reconstruction of phylogeny based on gene content.
article_number: e4545
article_processing_charge: No
article_type: original
author:
- first_name: Olga
full_name: Bochkareva, Olga
id: C4558D3C-6102-11E9-A62E-F418E6697425
last_name: Bochkareva
orcid: 0000-0003-1006-6639
- first_name: Natalia O.
full_name: Dranenko, Natalia O.
last_name: Dranenko
- first_name: Elena S.
full_name: Ocheredko, Elena S.
last_name: Ocheredko
- first_name: German M.
full_name: Kanevsky, German M.
last_name: Kanevsky
- first_name: Yaroslav N.
full_name: Lozinsky, Yaroslav N.
last_name: Lozinsky
- first_name: Vera A.
full_name: Khalaycheva, Vera A.
last_name: Khalaycheva
- first_name: Irena I.
full_name: Artamonova, Irena I.
last_name: Artamonova
- first_name: Mikhail S.
full_name: Gelfand, Mikhail S.
last_name: Gelfand
citation:
ama: Bochkareva O, Dranenko NO, Ocheredko ES, et al. Genome rearrangements and phylogeny
reconstruction in Yersinia pestis. PeerJ. 2018;6. doi:10.7717/peerj.4545
apa: Bochkareva, O., Dranenko, N. O., Ocheredko, E. S., Kanevsky, G. M., Lozinsky,
Y. N., Khalaycheva, V. A., … Gelfand, M. S. (2018). Genome rearrangements and
phylogeny reconstruction in Yersinia pestis. PeerJ. PeerJ. https://doi.org/10.7717/peerj.4545
chicago: Bochkareva, Olga, Natalia O. Dranenko, Elena S. Ocheredko, German M. Kanevsky,
Yaroslav N. Lozinsky, Vera A. Khalaycheva, Irena I. Artamonova, and Mikhail S.
Gelfand. “Genome Rearrangements and Phylogeny Reconstruction in Yersinia Pestis.”
PeerJ. PeerJ, 2018. https://doi.org/10.7717/peerj.4545.
ieee: O. Bochkareva et al., “Genome rearrangements and phylogeny reconstruction
in Yersinia pestis,” PeerJ, vol. 6. PeerJ, 2018.
ista: Bochkareva O, Dranenko NO, Ocheredko ES, Kanevsky GM, Lozinsky YN, Khalaycheva
VA, Artamonova II, Gelfand MS. 2018. Genome rearrangements and phylogeny reconstruction
in Yersinia pestis. PeerJ. 6, e4545.
mla: Bochkareva, Olga, et al. “Genome Rearrangements and Phylogeny Reconstruction
in Yersinia Pestis.” PeerJ, vol. 6, e4545, PeerJ, 2018, doi:10.7717/peerj.4545.
short: O. Bochkareva, N.O. Dranenko, E.S. Ocheredko, G.M. Kanevsky, Y.N. Lozinsky,
V.A. Khalaycheva, I.I. Artamonova, M.S. Gelfand, PeerJ 6 (2018).
date_created: 2020-08-15T11:08:23Z
date_published: 2018-03-27T00:00:00Z
date_updated: 2023-02-23T13:28:57Z
day: '27'
doi: 10.7717/peerj.4545
extern: '1'
external_id:
pmid:
- '29607260'
intvolume: ' 6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.7717/peerj.4545
month: '03'
oa: 1
oa_version: Published Version
pmid: 1
publication: PeerJ
publication_identifier:
issn:
- 2167-8359
publication_status: published
publisher: PeerJ
quality_controlled: '1'
status: public
title: Genome rearrangements and phylogeny reconstruction in Yersinia pestis
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 6
year: '2018'
...
---
_id: '8297'
abstract:
- lang: eng
text: "Designing a secure permissionless distributed ledger (blockchain) that performs
on par with centralized payment\r\nprocessors, such as Visa, is a challenging
task. Most existing distributed ledgers are unable to scale-out, i.e., to grow
their totalprocessing capacity with the number of validators; and those that do,
compromise security or decentralization. We present OmniLedger, a novel scale-out
distributed ledger that preserves longterm security under permissionless operation.
It ensures security and correctness by using a bias-resistant public-randomness
protocol for choosing large, statistically representative shards that process
transactions, and by introducing an efficient crossshard commit protocol that
atomically handles transactions affecting multiple shards. OmniLedger also optimizes
performance via parallel intra-shard transaction processing, ledger pruning via
collectively-signed state blocks, and low-latency “trust-butverify” \r\nvalidation
for low-value transactions. An evaluation ofour experimental prototype shows that
OmniLedger’s throughput\r\nscales linearly in the number of active validators,
supporting Visa-level workloads and beyond, while confirming typical transactions
in under two seconds."
article_processing_charge: No
author:
- first_name: Eleftherios
full_name: Kokoris Kogias, Eleftherios
id: f5983044-d7ef-11ea-ac6d-fd1430a26d30
last_name: Kokoris Kogias
- first_name: Philipp
full_name: Jovanovic, Philipp
last_name: Jovanovic
- first_name: Linus
full_name: Gasser, Linus
last_name: Gasser
- first_name: Nicolas
full_name: Gailly, Nicolas
last_name: Gailly
- first_name: Ewa
full_name: Syta, Ewa
last_name: Syta
- first_name: Bryan
full_name: Ford, Bryan
last_name: Ford
citation:
ama: 'Kokoris Kogias E, Jovanovic P, Gasser L, Gailly N, Syta E, Ford B. OmniLedger:
A secure, scale-out, decentralized ledger via sharding. In: 2018 IEEE Symposium
on Security and Privacy. IEEE; 2018:583-598. doi:10.1109/sp.2018.000-5'
apa: 'Kokoris Kogias, E., Jovanovic, P., Gasser, L., Gailly, N., Syta, E., &
Ford, B. (2018). OmniLedger: A secure, scale-out, decentralized ledger via sharding.
In 2018 IEEE Symposium on Security and Privacy (pp. 583–598). San Francisco,
CA, United States: IEEE. https://doi.org/10.1109/sp.2018.000-5'
chicago: 'Kokoris Kogias, Eleftherios, Philipp Jovanovic, Linus Gasser, Nicolas
Gailly, Ewa Syta, and Bryan Ford. “OmniLedger: A Secure, Scale-out, Decentralized
Ledger via Sharding.” In 2018 IEEE Symposium on Security and Privacy, 583–98.
IEEE, 2018. https://doi.org/10.1109/sp.2018.000-5.'
ieee: 'E. Kokoris Kogias, P. Jovanovic, L. Gasser, N. Gailly, E. Syta, and B. Ford,
“OmniLedger: A secure, scale-out, decentralized ledger via sharding,” in 2018
IEEE Symposium on Security and Privacy, San Francisco, CA, United States,
2018, pp. 583–598.'
ista: 'Kokoris Kogias E, Jovanovic P, Gasser L, Gailly N, Syta E, Ford B. 2018.
OmniLedger: A secure, scale-out, decentralized ledger via sharding. 2018 IEEE
Symposium on Security and Privacy. SP: Symposium on Security and Privacy, 583–598.'
mla: 'Kokoris Kogias, Eleftherios, et al. “OmniLedger: A Secure, Scale-out, Decentralized
Ledger via Sharding.” 2018 IEEE Symposium on Security and Privacy, IEEE,
2018, pp. 583–98, doi:10.1109/sp.2018.000-5.'
short: E. Kokoris Kogias, P. Jovanovic, L. Gasser, N. Gailly, E. Syta, B. Ford,
in:, 2018 IEEE Symposium on Security and Privacy, IEEE, 2018, pp. 583–598.
conference:
end_date: 2018-05-24
location: San Francisco, CA, United States
name: 'SP: Symposium on Security and Privacy'
start_date: 2018-05-20
date_created: 2020-08-26T11:46:35Z
date_published: 2018-07-26T00:00:00Z
date_updated: 2021-01-12T08:17:56Z
day: '26'
doi: 10.1109/sp.2018.000-5
extern: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://eprint.iacr.org/2017/406
month: '07'
oa: 1
oa_version: Preprint
page: 583-598
publication: 2018 IEEE Symposium on Security and Privacy
publication_identifier:
isbn:
- '9781538643532'
issn:
- 2375-1207
publication_status: published
publisher: IEEE
quality_controlled: '1'
status: public
title: 'OmniLedger: A secure, scale-out, decentralized ledger via sharding'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '8547'
abstract:
- lang: eng
text: The cerebral cortex contains multiple hierarchically organized areas with
distinctive cytoarchitectonical patterns, but the cellular mechanisms underlying
the emergence of this diversity remain unclear. Here, we have quantitatively investigated
the neuronal output of individual progenitor cells in the ventricular zone of
the developing mouse neocortex using a combination of methods that together circumvent
the biases and limitations of individual approaches. We found that individual
cortical progenitor cells show a high degree of stochasticity and generate pyramidal
cell lineages that adopt a wide range of laminar configurations. Mathematical
modelling these lineage data suggests that a small number of progenitor cell populations,
each generating pyramidal cells following different stochastic developmental programs,
suffice to generate the heterogenous complement of pyramidal cell lineages that
collectively build the complex cytoarchitecture of the neocortex.
acknowledgement: We thank I. Andrew and S.E. Bae for excellent technical assistance,
F. Gage for plasmids, and K. Nave (Nex-Cre) for mouse colonies. We thank members
of the Marín and Rico laboratories for stimulating discussions and ideas. Our research
on this topic is supported by grants from the European Research Council (ERC-2017-AdG
787355 to O.M and ERC2016-CoG 725780 to S.H.) and Wellcome Trust (103714MA) to O.M.
L.L. was the recipient of an EMBO long-term postdoctoral fellowship, R.B. received
support from FWF Lise-Meitner program (M 2416) and F.K.W. was supported by an EMBO
postdoctoral fellowship and is currently a Marie Skłodowska-Curie Fellow from the
European Commission under the H2020 Programme.
article_processing_charge: No
author:
- first_name: Alfredo
full_name: Llorca, Alfredo
last_name: Llorca
- first_name: Gabriele
full_name: Ciceri, Gabriele
last_name: Ciceri
- first_name: Robert J
full_name: Beattie, Robert J
id: 2E26DF60-F248-11E8-B48F-1D18A9856A87
last_name: Beattie
orcid: 0000-0002-8483-8753
- first_name: Fong K.
full_name: Wong, Fong K.
last_name: Wong
- first_name: Giovanni
full_name: Diana, Giovanni
last_name: Diana
- first_name: Eleni
full_name: Serafeimidou, Eleni
last_name: Serafeimidou
- first_name: Marian
full_name: Fernández-Otero, Marian
last_name: Fernández-Otero
- first_name: Carmen
full_name: Streicher, Carmen
id: 36BCB99C-F248-11E8-B48F-1D18A9856A87
last_name: Streicher
- first_name: Sebastian J.
full_name: Arnold, Sebastian J.
last_name: Arnold
- first_name: Martin
full_name: Meyer, Martin
last_name: Meyer
- first_name: Simon
full_name: Hippenmeyer, Simon
id: 37B36620-F248-11E8-B48F-1D18A9856A87
last_name: Hippenmeyer
orcid: 0000-0003-2279-1061
- first_name: Miguel
full_name: Maravall, Miguel
last_name: Maravall
- first_name: Oscar
full_name: Marín, Oscar
last_name: Marín
citation:
ama: Llorca A, Ciceri G, Beattie RJ, et al. Heterogeneous progenitor cell behaviors
underlie the assembly of neocortical cytoarchitecture. bioRxiv. doi:10.1101/494088
apa: Llorca, A., Ciceri, G., Beattie, R. J., Wong, F. K., Diana, G., Serafeimidou,
E., … Marín, O. (n.d.). Heterogeneous progenitor cell behaviors underlie the assembly
of neocortical cytoarchitecture. bioRxiv. Cold Spring Harbor Laboratory.
https://doi.org/10.1101/494088
chicago: Llorca, Alfredo, Gabriele Ciceri, Robert J Beattie, Fong K. Wong, Giovanni
Diana, Eleni Serafeimidou, Marian Fernández-Otero, et al. “Heterogeneous Progenitor
Cell Behaviors Underlie the Assembly of Neocortical Cytoarchitecture.” BioRxiv.
Cold Spring Harbor Laboratory, n.d. https://doi.org/10.1101/494088.
ieee: A. Llorca et al., “Heterogeneous progenitor cell behaviors underlie
the assembly of neocortical cytoarchitecture,” bioRxiv. Cold Spring Harbor
Laboratory.
ista: Llorca A, Ciceri G, Beattie RJ, Wong FK, Diana G, Serafeimidou E, Fernández-Otero
M, Streicher C, Arnold SJ, Meyer M, Hippenmeyer S, Maravall M, Marín O. Heterogeneous
progenitor cell behaviors underlie the assembly of neocortical cytoarchitecture.
bioRxiv, 10.1101/494088.
mla: Llorca, Alfredo, et al. “Heterogeneous Progenitor Cell Behaviors Underlie the
Assembly of Neocortical Cytoarchitecture.” BioRxiv, Cold Spring Harbor
Laboratory, doi:10.1101/494088.
short: A. Llorca, G. Ciceri, R.J. Beattie, F.K. Wong, G. Diana, E. Serafeimidou,
M. Fernández-Otero, C. Streicher, S.J. Arnold, M. Meyer, S. Hippenmeyer, M. Maravall,
O. Marín, BioRxiv (n.d.).
date_created: 2020-09-21T12:01:50Z
date_published: 2018-12-13T00:00:00Z
date_updated: 2021-01-12T08:20:00Z
day: '13'
department:
- _id: SiHi
doi: 10.1101/494088
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1101/494088
month: '12'
oa: 1
oa_version: Preprint
project:
- _id: 260018B0-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '725780'
name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
- _id: 264E56E2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: M02416
name: Molecular Mechanisms Regulating Gliogenesis in the Cerebral Cortex
publication: bioRxiv
publication_status: submitted
publisher: Cold Spring Harbor Laboratory
status: public
title: Heterogeneous progenitor cell behaviors underlie the assembly of neocortical
cytoarchitecture
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '86'
abstract:
- lang: eng
text: Responsiveness—the requirement that every request to a system be eventually
handled—is one of the fundamental liveness properties of a reactive system. Average
response time is a quantitative measure for the responsiveness requirement used
commonly in performance evaluation. We show how average response time can be computed
on state-transition graphs, on Markov chains, and on game graphs. In all three
cases, we give polynomial-time algorithms.
acknowledgement: 'This research was supported in part by the Austrian Science Fund
(FWF) under grants S11402-N23, S11407-N23 (RiSE/SHiNE) and Z211-N23 (Wittgenstein
Award), ERC Start grant (279307: Graph Games), Vienna Science and Technology Fund
(WWTF) through project ICT15-003 and by the National Science Centre (NCN), Poland
under grant 2014/15/D/ST6/04543.'
alternative_title:
- LNCS
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
- first_name: Jan
full_name: Otop, Jan
id: 2FC5DA74-F248-11E8-B48F-1D18A9856A87
last_name: Otop
citation:
ama: 'Chatterjee K, Henzinger TA, Otop J. Computing average response time. In: Lohstroh
M, Derler P, Sirjani M, eds. Principles of Modeling. Vol 10760. Springer;
2018:143-161. doi:10.1007/978-3-319-95246-8_9'
apa: Chatterjee, K., Henzinger, T. A., & Otop, J. (2018). Computing average
response time. In M. Lohstroh, P. Derler, & M. Sirjani (Eds.), Principles
of Modeling (Vol. 10760, pp. 143–161). Springer. https://doi.org/10.1007/978-3-319-95246-8_9
chicago: Chatterjee, Krishnendu, Thomas A Henzinger, and Jan Otop. “Computing Average
Response Time.” In Principles of Modeling, edited by Marten Lohstroh, Patricia
Derler, and Marjan Sirjani, 10760:143–61. Springer, 2018. https://doi.org/10.1007/978-3-319-95246-8_9.
ieee: K. Chatterjee, T. A. Henzinger, and J. Otop, “Computing average response time,”
in Principles of Modeling, vol. 10760, M. Lohstroh, P. Derler, and M. Sirjani,
Eds. Springer, 2018, pp. 143–161.
ista: 'Chatterjee K, Henzinger TA, Otop J. 2018.Computing average response time.
In: Principles of Modeling. LNCS, vol. 10760, 143–161.'
mla: Chatterjee, Krishnendu, et al. “Computing Average Response Time.” Principles
of Modeling, edited by Marten Lohstroh et al., vol. 10760, Springer, 2018,
pp. 143–61, doi:10.1007/978-3-319-95246-8_9.
short: K. Chatterjee, T.A. Henzinger, J. Otop, in:, M. Lohstroh, P. Derler, M. Sirjani
(Eds.), Principles of Modeling, Springer, 2018, pp. 143–161.
date_created: 2018-12-11T11:44:33Z
date_published: 2018-07-20T00:00:00Z
date_updated: 2021-01-12T08:20:14Z
day: '20'
ddc:
- '000'
department:
- _id: KrCh
- _id: ToHe
doi: 10.1007/978-3-319-95246-8_9
ec_funded: 1
editor:
- first_name: Marten
full_name: Lohstroh, Marten
last_name: Lohstroh
- first_name: Patricia
full_name: Derler, Patricia
last_name: Derler
- first_name: Marjan
full_name: Sirjani, Marjan
last_name: Sirjani
file:
- access_level: open_access
checksum: 9995c6ce6957333baf616fc4f20be597
content_type: application/pdf
creator: dernst
date_created: 2019-11-19T08:22:18Z
date_updated: 2020-07-14T12:48:14Z
file_id: '7053'
file_name: 2018_PrinciplesModeling_Chatterjee.pdf
file_size: 516307
relation: main_file
file_date_updated: 2020-07-14T12:48:14Z
has_accepted_license: '1'
intvolume: ' 10760'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Submitted Version
page: 143 - 161
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11407
name: Game Theory
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z211
name: The Wittgenstein Prize
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
- _id: 25892FC0-B435-11E9-9278-68D0E5697425
grant_number: ICT15-003
name: Efficient Algorithms for Computer Aided Verification
publication: Principles of Modeling
publication_status: published
publisher: Springer
publist_id: '7968'
quality_controlled: '1'
scopus_import: 1
status: public
title: Computing average response time
type: book_chapter
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10760
year: '2018'
...
---
_id: '9062'
abstract:
- lang: eng
text: 'Self-assembly is the autonomous organization of components into patterns
or structures: an essential ingredient of biology and a desired route to complex
organization1. At equilibrium, the structure is encoded through specific interactions2,3,4,5,6,7,8,
at an unfavourable entropic cost for the system. An alternative approach, widely
used by nature, uses energy input to bypass the entropy bottleneck and develop
features otherwise impossible at equilibrium9. Dissipative building blocks that
inject energy locally were made available by recent advances in colloidal science10,11
but have not been used to control self-assembly. Here we show the targeted formation
of self-powered microgears from active particles and their autonomous synchronization
into dynamical superstructures. We use a photoactive component that consumes fuel,
haematite, to devise phototactic microswimmers that form self-spinning microgears
following spatiotemporal light patterns. The gears are coupled via their chemical
clouds by diffusiophoresis12 and constitute the elementary bricks of synchronized
superstructures, which autonomously regulate their dynamics. The results are quantitatively
rationalized on the basis of a stochastic description of diffusio-phoretic oscillators
dynamically coupled by chemical gradients. Our findings harness non-equilibrium
phoretic phenomena to program interactions and direct self-assembly with fidelity
and specificity. It lays the groundwork for the autonomous construction of dynamical
architectures and functional micro-machinery.'
article_processing_charge: No
article_type: original
author:
- first_name: Antoine
full_name: Aubret, Antoine
last_name: Aubret
- first_name: Mena
full_name: Youssef, Mena
last_name: Youssef
- first_name: Stefano
full_name: Sacanna, Stefano
last_name: Sacanna
- first_name: Jérémie A
full_name: Palacci, Jérémie A
id: 8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d
last_name: Palacci
orcid: 0000-0002-7253-9465
citation:
ama: Aubret A, Youssef M, Sacanna S, Palacci JA. Targeted assembly and synchronization
of self-spinning microgears. Nature Physics. 2018;14(11):1114-1118. doi:10.1038/s41567-018-0227-4
apa: Aubret, A., Youssef, M., Sacanna, S., & Palacci, J. A. (2018). Targeted
assembly and synchronization of self-spinning microgears. Nature Physics.
Springer Nature. https://doi.org/10.1038/s41567-018-0227-4
chicago: Aubret, Antoine, Mena Youssef, Stefano Sacanna, and Jérémie A Palacci.
“Targeted Assembly and Synchronization of Self-Spinning Microgears.” Nature
Physics. Springer Nature, 2018. https://doi.org/10.1038/s41567-018-0227-4.
ieee: A. Aubret, M. Youssef, S. Sacanna, and J. A. Palacci, “Targeted assembly and
synchronization of self-spinning microgears,” Nature Physics, vol. 14,
no. 11. Springer Nature, pp. 1114–1118, 2018.
ista: Aubret A, Youssef M, Sacanna S, Palacci JA. 2018. Targeted assembly and synchronization
of self-spinning microgears. Nature Physics. 14(11), 1114–1118.
mla: Aubret, Antoine, et al. “Targeted Assembly and Synchronization of Self-Spinning
Microgears.” Nature Physics, vol. 14, no. 11, Springer Nature, 2018, pp.
1114–18, doi:10.1038/s41567-018-0227-4.
short: A. Aubret, M. Youssef, S. Sacanna, J.A. Palacci, Nature Physics 14 (2018)
1114–1118.
date_created: 2021-02-02T13:52:49Z
date_published: 2018-11-01T00:00:00Z
date_updated: 2023-02-23T13:48:02Z
day: '01'
doi: 10.1038/s41567-018-0227-4
extern: '1'
external_id:
arxiv:
- '1810.01033'
intvolume: ' 14'
issue: '11'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1810.01033
month: '11'
oa: 1
oa_version: Preprint
page: 1114-1118
publication: Nature Physics
publication_identifier:
eissn:
- 1745-2481
issn:
- 1745-2473
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Targeted assembly and synchronization of self-spinning microgears
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 14
year: '2018'
...
---
_id: '9229'
alternative_title:
- Molecular and cellular neuroscience
article_processing_charge: No
article_type: letter_note
author:
- first_name: Johann G
full_name: Danzl, Johann G
id: 42EFD3B6-F248-11E8-B48F-1D18A9856A87
last_name: Danzl
orcid: 0000-0001-8559-3973
citation:
ama: Danzl JG. Diffraction-unlimited optical imaging for synaptic physiology. Opera
Medica et Physiologica. 2018;4(S1):11. doi:10.20388/omp2018.00s1.001
apa: Danzl, J. G. (2018). Diffraction-unlimited optical imaging for synaptic physiology.
Opera Medica et Physiologica. Lobachevsky State University of Nizhny Novgorod.
https://doi.org/10.20388/omp2018.00s1.001
chicago: Danzl, Johann G. “Diffraction-Unlimited Optical Imaging for Synaptic Physiology.”
Opera Medica et Physiologica. Lobachevsky State University of Nizhny Novgorod,
2018. https://doi.org/10.20388/omp2018.00s1.001.
ieee: J. G. Danzl, “Diffraction-unlimited optical imaging for synaptic physiology,”
Opera Medica et Physiologica, vol. 4, no. S1. Lobachevsky State University
of Nizhny Novgorod, p. 11, 2018.
ista: Danzl JG. 2018. Diffraction-unlimited optical imaging for synaptic physiology.
Opera Medica et Physiologica. 4(S1), 11.
mla: Danzl, Johann G. “Diffraction-Unlimited Optical Imaging for Synaptic Physiology.”
Opera Medica et Physiologica, vol. 4, no. S1, Lobachevsky State University
of Nizhny Novgorod, 2018, p. 11, doi:10.20388/omp2018.00s1.001.
short: J.G. Danzl, Opera Medica et Physiologica 4 (2018) 11.
date_created: 2021-03-07T23:01:25Z
date_published: 2018-06-30T00:00:00Z
date_updated: 2021-12-03T07:31:05Z
day: '30'
department:
- _id: JoDa
doi: 10.20388/omp2018.00s1.001
intvolume: ' 4'
issue: S1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://operamedphys.org/content/molecular-and-cellular-neuroscience
month: '06'
oa: 1
oa_version: Published Version
page: '11'
publication: Opera Medica et Physiologica
publication_identifier:
eissn:
- 2500-2295
issn:
- 2500-2287
publication_status: published
publisher: Lobachevsky State University of Nizhny Novgorod
quality_controlled: '1'
scopus_import: '1'
status: public
title: Diffraction-unlimited optical imaging for synaptic physiology
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 4
year: '2018'
...
---
_id: '6005'
abstract:
- lang: eng
text: Network games are widely used as a model for selfish resource-allocation problems.
In the classicalmodel, each player selects a path connecting her source and target
vertices. The cost of traversingan edge depends on theload; namely, number of
players that traverse it. Thus, it abstracts the factthat different users may
use a resource at different times and for different durations, which playsan important
role in determining the costs of the users in reality. For example, when transmittingpackets
in a communication network, routing traffic in a road network, or processing a
task in aproduction system, actual sharing and congestion of resources crucially
depends on time.In [13], we introducedtimed network games, which add a time component
to network games.Each vertexvin the network is associated with a cost function,
mapping the load onvto theprice that a player pays for staying invfor one time
unit with this load. Each edge in thenetwork is guarded by the time intervals
in which it can be traversed, which forces the players tospend time in the vertices.
In this work we significantly extend the way time can be referred toin timed network
games. In the model we study, the network is equipped withclocks, and, as intimed
automata, edges are guarded by constraints on the values of the clocks, and their
traversalmay involve a reset of some clocks. We argue that the stronger model
captures many realisticnetworks. The addition of clocks breaks the techniques
we developed in [13] and we developnew techniques in order to show that positive
results on classic network games carry over to thestronger timed setting.
alternative_title:
- LIPIcs
article_number: '23'
article_processing_charge: No
author:
- first_name: Guy
full_name: Avni, Guy
id: 463C8BC2-F248-11E8-B48F-1D18A9856A87
last_name: Avni
orcid: 0000-0001-5588-8287
- first_name: Shibashis
full_name: Guha, Shibashis
last_name: Guha
- first_name: Orna
full_name: Kupferman, Orna
last_name: Kupferman
citation:
ama: 'Avni G, Guha S, Kupferman O. Timed network games with clocks. In: Vol 117.
Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2018. doi:10.4230/LIPICS.MFCS.2018.23'
apa: 'Avni, G., Guha, S., & Kupferman, O. (2018). Timed network games with clocks
(Vol. 117). Presented at the MFCS: Mathematical Foundations of Computer Science,
Liverpool, United Kingdom: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.
https://doi.org/10.4230/LIPICS.MFCS.2018.23'
chicago: Avni, Guy, Shibashis Guha, and Orna Kupferman. “Timed Network Games with
Clocks,” Vol. 117. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2018. https://doi.org/10.4230/LIPICS.MFCS.2018.23.
ieee: 'G. Avni, S. Guha, and O. Kupferman, “Timed network games with clocks,” presented
at the MFCS: Mathematical Foundations of Computer Science, Liverpool, United Kingdom,
2018, vol. 117.'
ista: 'Avni G, Guha S, Kupferman O. 2018. Timed network games with clocks. MFCS:
Mathematical Foundations of Computer Science, LIPIcs, vol. 117, 23.'
mla: Avni, Guy, et al. Timed Network Games with Clocks. Vol. 117, 23, Schloss
Dagstuhl - Leibniz-Zentrum für Informatik, 2018, doi:10.4230/LIPICS.MFCS.2018.23.
short: G. Avni, S. Guha, O. Kupferman, in:, Schloss Dagstuhl - Leibniz-Zentrum für
Informatik, 2018.
conference:
end_date: 2018-08-31
location: Liverpool, United Kingdom
name: 'MFCS: Mathematical Foundations of Computer Science'
start_date: 2018-08-27
date_created: 2019-02-14T14:12:09Z
date_published: 2018-08-01T00:00:00Z
date_updated: 2023-02-23T14:02:58Z
day: '01'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.4230/LIPICS.MFCS.2018.23
file:
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checksum: 41ab2ae9b63f5eb49fa995250c0ba128
content_type: application/pdf
creator: dernst
date_created: 2019-02-14T14:22:04Z
date_updated: 2020-07-14T12:47:15Z
file_id: '6007'
file_name: 2018_LIPIcs_Avni.pdf
file_size: 542889
relation: main_file
file_date_updated: 2020-07-14T12:47:15Z
has_accepted_license: '1'
intvolume: ' 117'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z211
name: The Wittgenstein Prize
- _id: 264B3912-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: M02369
name: Formal Methods meets Algorithmic Game Theory
publication_identifier:
issn:
- 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
related_material:
record:
- id: '963'
relation: earlier_version
status: public
scopus_import: '1'
status: public
title: Timed network games with clocks
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 117
year: '2018'
...
---
_id: '9668'
abstract:
- lang: eng
text: Estimating the homogeneous ice nucleation rate from undercooled liquid water
is crucial for understanding many important physical phenomena and technological
applications, and challenging for both experiments and theory. From a theoretical
point of view, difficulties arise due to the long time scales required, as well
as the numerous nucleation pathways involved to form ice nuclei with different
stacking disorders. We computed the homogeneous ice nucleation rate at a physically
relevant undercooling for a single-site water model, taking into account the diffuse
nature of ice–water interfaces, stacking disorders in ice nuclei, and the addition
rate of particles to the critical nucleus. We disentangled and investigated the
relative importance of all the terms, including interfacial free energy, entropic
contributions and the kinetic prefactor, that contribute to the overall nucleation
rate. Breaking down the problem into pieces not only provides physical insights
into ice nucleation, but also sheds light on the long-standing discrepancy between
different theoretical predictions, as well as between theoretical and experimental
determinations of the nucleation rate. Moreover, we pinpoint the main shortcomings
and suggest strategies to systematically improve the existing simulation methods.
article_processing_charge: No
article_type: original
author:
- first_name: Bingqing
full_name: Cheng, Bingqing
id: cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9
last_name: Cheng
orcid: 0000-0002-3584-9632
- first_name: Christoph
full_name: Dellago, Christoph
last_name: Dellago
- first_name: Michele
full_name: Ceriotti, Michele
last_name: Ceriotti
citation:
ama: 'Cheng B, Dellago C, Ceriotti M. Theoretical prediction of the homogeneous
ice nucleation rate: Disentangling thermodynamics and kinetics. Physical Chemistry
Chemical Physics. 2018;20(45):28732-28740. doi:10.1039/c8cp04561e'
apa: 'Cheng, B., Dellago, C., & Ceriotti, M. (2018). Theoretical prediction
of the homogeneous ice nucleation rate: Disentangling thermodynamics and kinetics.
Physical Chemistry Chemical Physics. Royal Society of Chemistry. https://doi.org/10.1039/c8cp04561e'
chicago: 'Cheng, Bingqing, Christoph Dellago, and Michele Ceriotti. “Theoretical
Prediction of the Homogeneous Ice Nucleation Rate: Disentangling Thermodynamics
and Kinetics.” Physical Chemistry Chemical Physics. Royal Society of Chemistry,
2018. https://doi.org/10.1039/c8cp04561e.'
ieee: 'B. Cheng, C. Dellago, and M. Ceriotti, “Theoretical prediction of the homogeneous
ice nucleation rate: Disentangling thermodynamics and kinetics,” Physical Chemistry
Chemical Physics, vol. 20, no. 45. Royal Society of Chemistry, pp. 28732–28740,
2018.'
ista: 'Cheng B, Dellago C, Ceriotti M. 2018. Theoretical prediction of the homogeneous
ice nucleation rate: Disentangling thermodynamics and kinetics. Physical Chemistry
Chemical Physics. 20(45), 28732–28740.'
mla: 'Cheng, Bingqing, et al. “Theoretical Prediction of the Homogeneous Ice Nucleation
Rate: Disentangling Thermodynamics and Kinetics.” Physical Chemistry Chemical
Physics, vol. 20, no. 45, Royal Society of Chemistry, 2018, pp. 28732–40,
doi:10.1039/c8cp04561e.'
short: B. Cheng, C. Dellago, M. Ceriotti, Physical Chemistry Chemical Physics 20
(2018) 28732–28740.
date_created: 2021-07-15T12:51:44Z
date_published: 2018-12-07T00:00:00Z
date_updated: 2021-08-09T12:36:47Z
day: '07'
doi: 10.1039/c8cp04561e
extern: '1'
external_id:
arxiv:
- '1807.05551'
pmid:
- '30412211'
intvolume: ' 20'
issue: '45'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1807.05551
month: '12'
oa: 1
oa_version: Preprint
page: 28732-28740
pmid: 1
publication: Physical Chemistry Chemical Physics
publication_identifier:
eissn:
- 1463-9084
issn:
- 1463-9076
publication_status: published
publisher: Royal Society of Chemistry
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Theoretical prediction of the homogeneous ice nucleation rate: Disentangling
thermodynamics and kinetics'
type: journal_article
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 20
year: '2018'
...
---
_id: '9687'
abstract:
- lang: eng
text: The Gibbs free energy is the fundamental thermodynamic potential underlying
the relative stability of different states of matter under constant-pressure conditions.
However, computing this quantity from atomic-scale simulations is far from trivial,
so the potential energy of a system is often used as a proxy. In this paper, we
use a combination of thermodynamic integration methods to accurately evaluate
the Gibbs free energies associated with defects in crystals, including the vacancy
formation energy in bcc iron, and the stacking fault energy in fcc nickel, iron,
and cobalt. We quantify the importance of entropic and anharmonic effects in determining
the free energies of defects at high temperatures, and show that the potential
energy approximation as well as the harmonic approximation may produce inaccurate
or even qualitatively wrong results. Our calculations manifest the necessity to
employ accurate free energy methods such as thermodynamic integration to estimate
the stability of crystallographic defects at high temperatures.
article_number: '054102'
article_processing_charge: No
article_type: original
author:
- first_name: Bingqing
full_name: Cheng, Bingqing
id: cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9
last_name: Cheng
orcid: 0000-0002-3584-9632
- first_name: Michele
full_name: Ceriotti, Michele
last_name: Ceriotti
citation:
ama: 'Cheng B, Ceriotti M. Computing the absolute Gibbs free energy in atomistic
simulations: Applications to defects in solids. Physical Review B. 2018;97(5).
doi:10.1103/physrevb.97.054102'
apa: 'Cheng, B., & Ceriotti, M. (2018). Computing the absolute Gibbs free energy
in atomistic simulations: Applications to defects in solids. Physical Review
B. American Physical Society. https://doi.org/10.1103/physrevb.97.054102'
chicago: 'Cheng, Bingqing, and Michele Ceriotti. “Computing the Absolute Gibbs Free
Energy in Atomistic Simulations: Applications to Defects in Solids.” Physical
Review B. American Physical Society, 2018. https://doi.org/10.1103/physrevb.97.054102.'
ieee: 'B. Cheng and M. Ceriotti, “Computing the absolute Gibbs free energy in atomistic
simulations: Applications to defects in solids,” Physical Review B, vol.
97, no. 5. American Physical Society, 2018.'
ista: 'Cheng B, Ceriotti M. 2018. Computing the absolute Gibbs free energy in atomistic
simulations: Applications to defects in solids. Physical Review B. 97(5), 054102.'
mla: 'Cheng, Bingqing, and Michele Ceriotti. “Computing the Absolute Gibbs Free
Energy in Atomistic Simulations: Applications to Defects in Solids.” Physical
Review B, vol. 97, no. 5, 054102, American Physical Society, 2018, doi:10.1103/physrevb.97.054102.'
short: B. Cheng, M. Ceriotti, Physical Review B 97 (2018).
date_created: 2021-07-19T09:39:48Z
date_published: 2018-02-01T00:00:00Z
date_updated: 2021-08-09T12:38:26Z
day: '01'
doi: 10.1103/physrevb.97.054102
extern: '1'
external_id:
arxiv:
- '1710.02815'
intvolume: ' 97'
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1710.02815
month: '02'
oa: 1
oa_version: Preprint
publication: Physical Review B
publication_identifier:
eissn:
- 2469-9969
issn:
- 2469-9950
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Computing the absolute Gibbs free energy in atomistic simulations: Applications
to defects in solids'
type: journal_article
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 97
year: '2018'
...
---
_id: '315'
abstract:
- lang: eng
text: 'More than 100 years after Grigg’s influential analysis of species’ borders,
the causes of limits to species’ ranges still represent a puzzle that has never
been understood with clarity. The topic has become especially important recently
as many scientists have become interested in the potential for species’ ranges
to shift in response to climate change—and yet nearly all of those studies fail
to recognise or incorporate evolutionary genetics in a way that relates to theoretical
developments. I show that range margins can be understood based on just two measurable
parameters: (i) the fitness cost of dispersal—a measure of environmental heterogeneity—and
(ii) the strength of genetic drift, which reduces genetic diversity. Together,
these two parameters define an ‘expansion threshold’: adaptation fails when genetic
drift reduces genetic diversity below that required for adaptation to a heterogeneous
environment. When the key parameters drop below this expansion threshold locally,
a sharp range margin forms. When they drop below this threshold throughout the
species’ range, adaptation collapses everywhere, resulting in either extinction
or formation of a fragmented metapopulation. Because the effects of dispersal
differ fundamentally with dimension, the second parameter—the strength of genetic
drift—is qualitatively different compared to a linear habitat. In two-dimensional
habitats, genetic drift becomes effectively independent of selection. It decreases
with ‘neighbourhood size’—the number of individuals accessible by dispersal within
one generation. Moreover, in contrast to earlier predictions, which neglected
evolution of genetic variance and/or stochasticity in two dimensions, dispersal
into small marginal populations aids adaptation. This is because the reduction
of both genetic and demographic stochasticity has a stronger effect than the cost
of dispersal through increased maladaptation. The expansion threshold thus provides
a novel, theoretically justified, and testable prediction for formation of the
range margin and collapse of the species’ range.'
article_number: e2005372
author:
- first_name: Jitka
full_name: Polechova, Jitka
id: 3BBFB084-F248-11E8-B48F-1D18A9856A87
last_name: Polechova
orcid: 0000-0003-0951-3112
citation:
ama: Polechova J. Is the sky the limit? On the expansion threshold of a species’
range. PLoS Biology. 2018;16(6). doi:10.1371/journal.pbio.2005372
apa: Polechova, J. (2018). Is the sky the limit? On the expansion threshold of a
species’ range. PLoS Biology. Public Library of Science. https://doi.org/10.1371/journal.pbio.2005372
chicago: Polechova, Jitka. “Is the Sky the Limit? On the Expansion Threshold of
a Species’ Range.” PLoS Biology. Public Library of Science, 2018. https://doi.org/10.1371/journal.pbio.2005372.
ieee: J. Polechova, “Is the sky the limit? On the expansion threshold of a species’
range,” PLoS Biology, vol. 16, no. 6. Public Library of Science, 2018.
ista: Polechova J. 2018. Is the sky the limit? On the expansion threshold of a species’
range. PLoS Biology. 16(6), e2005372.
mla: Polechova, Jitka. “Is the Sky the Limit? On the Expansion Threshold of a Species’
Range.” PLoS Biology, vol. 16, no. 6, e2005372, Public Library of Science,
2018, doi:10.1371/journal.pbio.2005372.
short: J. Polechova, PLoS Biology 16 (2018).
date_created: 2018-12-11T11:45:46Z
date_published: 2018-06-15T00:00:00Z
date_updated: 2023-02-23T14:10:16Z
day: '15'
ddc:
- '576'
department:
- _id: NiBa
doi: 10.1371/journal.pbio.2005372
file:
- access_level: open_access
checksum: 908c52751bba30c55ed36789e5e4c84d
content_type: application/pdf
creator: dernst
date_created: 2019-01-22T08:30:03Z
date_updated: 2020-07-14T12:46:01Z
file_id: '5870'
file_name: 2017_PLOS_Polechova.pdf
file_size: 6968201
relation: main_file
file_date_updated: 2020-07-14T12:46:01Z
has_accepted_license: '1'
intvolume: ' 16'
issue: '6'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: PLoS Biology
publication_identifier:
issn:
- '15449173'
publication_status: published
publisher: Public Library of Science
publist_id: '7550'
quality_controlled: '1'
related_material:
record:
- id: '9839'
relation: research_data
status: public
scopus_import: 1
status: public
title: Is the sky the limit? On the expansion threshold of a species’ range
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 16
year: '2018'
...
---
_id: '8422'
abstract:
- lang: eng
text: 'The Birkhoff conjecture says that the boundary of a strictly convex integrable
billiard table is necessarily an ellipse. In this article, we consider a stronger
notion of integrability, namely integrability close to the boundary, and prove
a local version of this conjecture: a small perturbation of an ellipse of small
eccentricity which preserves integrability near the boundary, is itself an ellipse.
This extends the result in Avila et al. (Ann Math 184:527–558, ADK16), where integrability
was assumed on a larger set. In particular, it shows that (local) integrability
near the boundary implies global integrability. One of the crucial ideas in the
proof consists in analyzing Taylor expansion of the corresponding action-angle
coordinates with respect to the eccentricity parameter, deriving and studying
higher order conditions for the preservation of integrable rational caustics.'
article_processing_charge: No
article_type: original
author:
- first_name: Guan
full_name: Huang, Guan
last_name: Huang
- first_name: Vadim
full_name: Kaloshin, Vadim
id: FE553552-CDE8-11E9-B324-C0EBE5697425
last_name: Kaloshin
orcid: 0000-0002-6051-2628
- first_name: Alfonso
full_name: Sorrentino, Alfonso
last_name: Sorrentino
citation:
ama: Huang G, Kaloshin V, Sorrentino A. Nearly circular domains which are integrable
close to the boundary are ellipses. Geometric and Functional Analysis.
2018;28(2):334-392. doi:10.1007/s00039-018-0440-4
apa: Huang, G., Kaloshin, V., & Sorrentino, A. (2018). Nearly circular domains
which are integrable close to the boundary are ellipses. Geometric and Functional
Analysis. Springer Nature. https://doi.org/10.1007/s00039-018-0440-4
chicago: Huang, Guan, Vadim Kaloshin, and Alfonso Sorrentino. “Nearly Circular Domains
Which Are Integrable Close to the Boundary Are Ellipses.” Geometric and Functional
Analysis. Springer Nature, 2018. https://doi.org/10.1007/s00039-018-0440-4.
ieee: G. Huang, V. Kaloshin, and A. Sorrentino, “Nearly circular domains which are
integrable close to the boundary are ellipses,” Geometric and Functional Analysis,
vol. 28, no. 2. Springer Nature, pp. 334–392, 2018.
ista: Huang G, Kaloshin V, Sorrentino A. 2018. Nearly circular domains which are
integrable close to the boundary are ellipses. Geometric and Functional Analysis.
28(2), 334–392.
mla: Huang, Guan, et al. “Nearly Circular Domains Which Are Integrable Close to
the Boundary Are Ellipses.” Geometric and Functional Analysis, vol. 28,
no. 2, Springer Nature, 2018, pp. 334–92, doi:10.1007/s00039-018-0440-4.
short: G. Huang, V. Kaloshin, A. Sorrentino, Geometric and Functional Analysis 28
(2018) 334–392.
date_created: 2020-09-17T10:42:30Z
date_published: 2018-03-18T00:00:00Z
date_updated: 2021-01-12T08:19:11Z
day: '18'
doi: 10.1007/s00039-018-0440-4
extern: '1'
external_id:
arxiv:
- '1705.10601'
intvolume: ' 28'
issue: '2'
keyword:
- Geometry and Topology
- Analysis
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1705.10601
month: '03'
oa: 1
oa_version: Preprint
page: 334-392
publication: Geometric and Functional Analysis
publication_identifier:
issn:
- 1016-443X
- 1420-8970
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Nearly circular domains which are integrable close to the boundary are ellipses
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 28
year: '2018'
...
---
_id: '8421'
abstract:
- lang: eng
text: 'The classical Birkhoff conjecture claims that the boundary of a strictly
convex integrable billiard table is necessarily an ellipse (or a circle as a special
case). In this article we prove a complete local version of this conjecture: a
small integrable perturbation of an ellipse must be an ellipse. This extends and
completes the result in Avila-De Simoi-Kaloshin, where nearly circular domains
were considered. One of the crucial ideas in the proof is to extend action-angle
coordinates for elliptic billiards into complex domains (with respect to the angle),
and to thoroughly analyze the nature of their complex singularities. As an application,
we are able to prove some spectral rigidity results for elliptic domains.'
article_processing_charge: No
article_type: original
author:
- first_name: Vadim
full_name: Kaloshin, Vadim
id: FE553552-CDE8-11E9-B324-C0EBE5697425
last_name: Kaloshin
orcid: 0000-0002-6051-2628
- first_name: Alfonso
full_name: Sorrentino, Alfonso
last_name: Sorrentino
citation:
ama: Kaloshin V, Sorrentino A. On the local Birkhoff conjecture for convex billiards.
Annals of Mathematics. 2018;188(1):315-380. doi:10.4007/annals.2018.188.1.6
apa: Kaloshin, V., & Sorrentino, A. (2018). On the local Birkhoff conjecture
for convex billiards. Annals of Mathematics. Annals of Mathematics, Princeton
U. https://doi.org/10.4007/annals.2018.188.1.6
chicago: Kaloshin, Vadim, and Alfonso Sorrentino. “On the Local Birkhoff Conjecture
for Convex Billiards.” Annals of Mathematics. Annals of Mathematics, Princeton
U, 2018. https://doi.org/10.4007/annals.2018.188.1.6.
ieee: V. Kaloshin and A. Sorrentino, “On the local Birkhoff conjecture for convex
billiards,” Annals of Mathematics, vol. 188, no. 1. Annals of Mathematics,
Princeton U, pp. 315–380, 2018.
ista: Kaloshin V, Sorrentino A. 2018. On the local Birkhoff conjecture for convex
billiards. Annals of Mathematics. 188(1), 315–380.
mla: Kaloshin, Vadim, and Alfonso Sorrentino. “On the Local Birkhoff Conjecture
for Convex Billiards.” Annals of Mathematics, vol. 188, no. 1, Annals of
Mathematics, Princeton U, 2018, pp. 315–80, doi:10.4007/annals.2018.188.1.6.
short: V. Kaloshin, A. Sorrentino, Annals of Mathematics 188 (2018) 315–380.
date_created: 2020-09-17T10:42:22Z
date_published: 2018-07-01T00:00:00Z
date_updated: 2021-01-12T08:19:10Z
day: '01'
doi: 10.4007/annals.2018.188.1.6
extern: '1'
external_id:
arxiv:
- '1612.09194'
intvolume: ' 188'
issue: '1'
keyword:
- Statistics
- Probability and Uncertainty
- Statistics and Probability
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1612.09194
month: '07'
oa: 1
oa_version: Preprint
page: 315-380
publication: Annals of Mathematics
publication_identifier:
issn:
- 0003-486X
publication_status: published
publisher: Annals of Mathematics, Princeton U
quality_controlled: '1'
status: public
title: On the local Birkhoff conjecture for convex billiards
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 188
year: '2018'
...
---
_id: '8420'
abstract:
- lang: eng
text: We show that in the space of all convex billiard boundaries, the set of boundaries
with rational caustics is dense. More precisely, the set of billiard boundaries
with caustics of rotation number 1/q is polynomially sense in the smooth case,
and exponentially dense in the analytic case.
article_processing_charge: No
article_type: original
author:
- first_name: Vadim
full_name: Kaloshin, Vadim
id: FE553552-CDE8-11E9-B324-C0EBE5697425
last_name: Kaloshin
orcid: 0000-0002-6051-2628
- first_name: Ke
full_name: Zhang, Ke
last_name: Zhang
citation:
ama: Kaloshin V, Zhang K. Density of convex billiards with rational caustics. Nonlinearity.
2018;31(11):5214-5234. doi:10.1088/1361-6544/aadc12
apa: Kaloshin, V., & Zhang, K. (2018). Density of convex billiards with rational
caustics. Nonlinearity. IOP Publishing. https://doi.org/10.1088/1361-6544/aadc12
chicago: Kaloshin, Vadim, and Ke Zhang. “Density of Convex Billiards with Rational
Caustics.” Nonlinearity. IOP Publishing, 2018. https://doi.org/10.1088/1361-6544/aadc12.
ieee: V. Kaloshin and K. Zhang, “Density of convex billiards with rational caustics,”
Nonlinearity, vol. 31, no. 11. IOP Publishing, pp. 5214–5234, 2018.
ista: Kaloshin V, Zhang K. 2018. Density of convex billiards with rational caustics.
Nonlinearity. 31(11), 5214–5234.
mla: Kaloshin, Vadim, and Ke Zhang. “Density of Convex Billiards with Rational Caustics.”
Nonlinearity, vol. 31, no. 11, IOP Publishing, 2018, pp. 5214–34, doi:10.1088/1361-6544/aadc12.
short: V. Kaloshin, K. Zhang, Nonlinearity 31 (2018) 5214–5234.
date_created: 2020-09-17T10:42:09Z
date_published: 2018-10-15T00:00:00Z
date_updated: 2021-01-12T08:19:10Z
day: '15'
doi: 10.1088/1361-6544/aadc12
extern: '1'
external_id:
arxiv:
- '1706.07968'
intvolume: ' 31'
issue: '11'
keyword:
- Mathematical Physics
- General Physics and Astronomy
- Applied Mathematics
- Statistical and Nonlinear Physics
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1706.07968
month: '10'
oa: 1
oa_version: Preprint
page: 5214-5234
publication: Nonlinearity
publication_identifier:
issn:
- 0951-7715
- 1361-6544
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
status: public
title: Density of convex billiards with rational caustics
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 31
year: '2018'
...
---
_id: '8426'
abstract:
- lang: eng
text: For any strictly convex planar domain Ω ⊂ R2 with a C∞ boundary one can associate
an infinite sequence of spectral invariants introduced by Marvizi–Merlose [5].
These invariants can generically be determined using the spectrum of the Dirichlet
problem of the Laplace operator. A natural question asks if this collection is
sufficient to determine Ω up to isometry. In this paper we give a counterexample,
namely, we present two nonisometric domains Ω and Ω¯ with the same collection
of Marvizi–Melrose invariants. Moreover, each domain has countably many periodic
orbits {Sn}n≥1 (resp. {S¯n}n⩾1) of period going to infinity such that Sn and S¯n
have the same period and perimeter for each n.
article_processing_charge: No
article_type: original
author:
- first_name: Lev
full_name: Buhovsky, Lev
last_name: Buhovsky
- first_name: Vadim
full_name: Kaloshin, Vadim
id: FE553552-CDE8-11E9-B324-C0EBE5697425
last_name: Kaloshin
orcid: 0000-0002-6051-2628
citation:
ama: Buhovsky L, Kaloshin V. Nonisometric domains with the same Marvizi-Melrose
invariants. Regular and Chaotic Dynamics. 2018;23:54-59. doi:10.1134/s1560354718010057
apa: Buhovsky, L., & Kaloshin, V. (2018). Nonisometric domains with the same
Marvizi-Melrose invariants. Regular and Chaotic Dynamics. Springer Nature.
https://doi.org/10.1134/s1560354718010057
chicago: Buhovsky, Lev, and Vadim Kaloshin. “Nonisometric Domains with the Same
Marvizi-Melrose Invariants.” Regular and Chaotic Dynamics. Springer Nature,
2018. https://doi.org/10.1134/s1560354718010057.
ieee: L. Buhovsky and V. Kaloshin, “Nonisometric domains with the same Marvizi-Melrose
invariants,” Regular and Chaotic Dynamics, vol. 23. Springer Nature, pp.
54–59, 2018.
ista: Buhovsky L, Kaloshin V. 2018. Nonisometric domains with the same Marvizi-Melrose
invariants. Regular and Chaotic Dynamics. 23, 54–59.
mla: Buhovsky, Lev, and Vadim Kaloshin. “Nonisometric Domains with the Same Marvizi-Melrose
Invariants.” Regular and Chaotic Dynamics, vol. 23, Springer Nature, 2018,
pp. 54–59, doi:10.1134/s1560354718010057.
short: L. Buhovsky, V. Kaloshin, Regular and Chaotic Dynamics 23 (2018) 54–59.
date_created: 2020-09-17T10:43:21Z
date_published: 2018-02-05T00:00:00Z
date_updated: 2021-01-12T08:19:11Z
day: '05'
doi: 10.1134/s1560354718010057
extern: '1'
external_id:
arxiv:
- '1801.00952'
intvolume: ' 23'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1801.00952
month: '02'
oa: 1
oa_version: Preprint
page: 54-59
publication: Regular and Chaotic Dynamics
publication_identifier:
issn:
- 1560-3547
- 1468-4845
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: Nonisometric domains with the same Marvizi-Melrose invariants
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 23
year: '2018'
...
---
_id: '9053'
abstract:
- lang: eng
text: The development of strategies to assemble microscopic machines from dissipative
building blocks are essential on the route to novel active materials. We recently
demonstrated the hierarchical self-assembly of phoretic microswimmers into self-spinning
microgears and their synchronization by diffusiophoretic interactions [Aubret
et al., Nat. Phys., 2018]. In this paper, we adopt a pedagogical approach and
expose our strategy to control self-assembly and build machines using phoretic
phenomena. We notably introduce Highly Inclined Laminated Optical sheets microscopy
(HILO) to image and characterize anisotropic and dynamic diffusiophoretic interactions,
which cannot be performed by conventional fluorescence microscopy. The dynamics
of a (haematite) photocatalytic material immersed in (hydrogen peroxide) fuel
under various illumination patterns is first described and quantitatively rationalized
by a model of diffusiophoresis, the migration of a colloidal particle in a concentration
gradient. It is further exploited to design phototactic microswimmers that direct
towards the high intensity of light, as a result of the reorientation of the haematite
in a light gradient. We finally show the assembly of self-spinning microgears
from colloidal microswimmers and carefully characterize the interactions using
HILO techniques. The results are compared with analytical and numerical predictions
and agree quantitatively, stressing the important role played by concentration
gradients induced by chemical activity to control and design interactions. Because
the approach described hereby is generic, this works paves the way for the rational
design of machines by controlling phoretic phenomena.
article_processing_charge: No
article_type: original
author:
- first_name: Antoine
full_name: Aubret, Antoine
last_name: Aubret
- first_name: Jérémie A
full_name: Palacci, Jérémie A
id: 8fb92548-2b22-11eb-b7c1-a3f0d08d7c7d
last_name: Palacci
orcid: 0000-0002-7253-9465
citation:
ama: Aubret A, Palacci JA. Diffusiophoretic design of self-spinning microgears from
colloidal microswimmers. Soft Matter. 2018;14(47):9577-9588. doi:10.1039/c8sm01760c
apa: Aubret, A., & Palacci, J. A. (2018). Diffusiophoretic design of self-spinning
microgears from colloidal microswimmers. Soft Matter. Royal Society of
Chemistry . https://doi.org/10.1039/c8sm01760c
chicago: Aubret, Antoine, and Jérémie A Palacci. “Diffusiophoretic Design of Self-Spinning
Microgears from Colloidal Microswimmers.” Soft Matter. Royal Society of
Chemistry , 2018. https://doi.org/10.1039/c8sm01760c.
ieee: A. Aubret and J. A. Palacci, “Diffusiophoretic design of self-spinning microgears
from colloidal microswimmers,” Soft Matter, vol. 14, no. 47. Royal Society
of Chemistry , pp. 9577–9588, 2018.
ista: Aubret A, Palacci JA. 2018. Diffusiophoretic design of self-spinning microgears
from colloidal microswimmers. Soft Matter. 14(47), 9577–9588.
mla: Aubret, Antoine, and Jérémie A. Palacci. “Diffusiophoretic Design of Self-Spinning
Microgears from Colloidal Microswimmers.” Soft Matter, vol. 14, no. 47,
Royal Society of Chemistry , 2018, pp. 9577–88, doi:10.1039/c8sm01760c.
short: A. Aubret, J.A. Palacci, Soft Matter 14 (2018) 9577–9588.
date_created: 2021-02-01T13:44:41Z
date_published: 2018-12-21T00:00:00Z
date_updated: 2023-02-23T13:47:43Z
day: '21'
doi: 10.1039/c8sm01760c
extern: '1'
external_id:
arxiv:
- '1909.11121'
pmid:
- '30456407'
intvolume: ' 14'
issue: '47'
keyword:
- General Chemistry
- Condensed Matter Physics
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1909.11121
month: '12'
oa: 1
oa_version: Preprint
page: 9577-9588
pmid: 1
publication: Soft Matter
publication_identifier:
eissn:
- 1744-6848
issn:
- 1744-683X
publication_status: published
publisher: 'Royal Society of Chemistry '
quality_controlled: '1'
scopus_import: '1'
status: public
title: Diffusiophoretic design of self-spinning microgears from colloidal microswimmers
type: journal_article
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 14
year: '2018'
...
---
_id: '9136'
abstract:
- lang: eng
text: In this study we investigate the scaling of precipitation extremes with temperature
in the Mediterranean region by assessing against observations the present day
and future regional climate simulations performed in the frame of the HyMeX and
MED-CORDEX programs. Over the 1979–2008 period, despite differences in quantitative
precipitation simulation across the various models, the change in precipitation
extremes with respect to temperature is robust and consistent. The spatial variability
of the temperature–precipitation extremes relationship displays a hook shape across
the Mediterranean, with negative slope at high temperatures and a slope following
Clausius–Clapeyron (CC)-scaling at low temperatures. The temperature at which
the slope of the temperature–precipitation extreme relation sharply changes (or
temperature break), ranges from about 20 °C in the western Mediterranean to <10
°C in Greece. In addition, this slope is always negative in the arid regions of
the Mediterranean. The scaling of the simulated precipitation extremes is insensitive
to ocean–atmosphere coupling, while it depends very weakly on the resolution at
high temperatures for short precipitation accumulation times. In future climate
scenario simulations covering the 2070–2100 period, the temperature break shifts
to higher temperatures by a value which is on average the mean regional temperature
change due to global warming. The slope of the simulated future temperature–precipitation
extremes relationship is close to CC-scaling at temperatures below the temperature
break, while at high temperatures, the negative slope is close, but somewhat flatter
or steeper, than in the current climate depending on the model. Overall, models
predict more intense precipitation extremes in the future. Adjusting the temperature–precipitation
extremes relationship in the present climate using the CC law and the temperature
shift in the future allows the recovery of the temperature–precipitation extremes
relationship in the future climate. This implies negligible regional changes of
relative humidity in the future despite the large warming and drying over the
Mediterranean. This suggests that the Mediterranean Sea is the primary source
of moisture which counteracts the drying and warming impacts on relative humidity
in parts of the Mediterranean region.
article_processing_charge: No
article_type: original
author:
- first_name: Philippe
full_name: Drobinski, Philippe
last_name: Drobinski
- first_name: Nicolas Da
full_name: Silva, Nicolas Da
last_name: Silva
- first_name: Gérémy
full_name: Panthou, Gérémy
last_name: Panthou
- first_name: Sophie
full_name: Bastin, Sophie
last_name: Bastin
- first_name: Caroline J
full_name: Muller, Caroline J
id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
last_name: Muller
orcid: 0000-0001-5836-5350
- first_name: Bodo
full_name: Ahrens, Bodo
last_name: Ahrens
- first_name: Marco
full_name: Borga, Marco
last_name: Borga
- first_name: Dario
full_name: Conte, Dario
last_name: Conte
- first_name: Giorgia
full_name: Fosser, Giorgia
last_name: Fosser
- first_name: Filippo
full_name: Giorgi, Filippo
last_name: Giorgi
- first_name: Ivan
full_name: Güttler, Ivan
last_name: Güttler
- first_name: Vassiliki
full_name: Kotroni, Vassiliki
last_name: Kotroni
- first_name: Laurent
full_name: Li, Laurent
last_name: Li
- first_name: Efrat
full_name: Morin, Efrat
last_name: Morin
- first_name: Bariş
full_name: Önol, Bariş
last_name: Önol
- first_name: Pere
full_name: Quintana-Segui, Pere
last_name: Quintana-Segui
- first_name: Raquel
full_name: Romera, Raquel
last_name: Romera
- first_name: Csaba Zsolt
full_name: Torma, Csaba Zsolt
last_name: Torma
citation:
ama: 'Drobinski P, Silva ND, Panthou G, et al. Scaling precipitation extremes with
temperature in the Mediterranean: Past climate assessment and projection in anthropogenic
scenarios. Climate Dynamics. 2018;51(3):1237-1257. doi:10.1007/s00382-016-3083-x'
apa: 'Drobinski, P., Silva, N. D., Panthou, G., Bastin, S., Muller, C. J., Ahrens,
B., … Torma, C. Z. (2018). Scaling precipitation extremes with temperature in
the Mediterranean: Past climate assessment and projection in anthropogenic scenarios.
Climate Dynamics. Springer Nature. https://doi.org/10.1007/s00382-016-3083-x'
chicago: 'Drobinski, Philippe, Nicolas Da Silva, Gérémy Panthou, Sophie Bastin,
Caroline J Muller, Bodo Ahrens, Marco Borga, et al. “Scaling Precipitation Extremes
with Temperature in the Mediterranean: Past Climate Assessment and Projection
in Anthropogenic Scenarios.” Climate Dynamics. Springer Nature, 2018. https://doi.org/10.1007/s00382-016-3083-x.'
ieee: 'P. Drobinski et al., “Scaling precipitation extremes with temperature
in the Mediterranean: Past climate assessment and projection in anthropogenic
scenarios,” Climate Dynamics, vol. 51, no. 3. Springer Nature, pp. 1237–1257,
2018.'
ista: 'Drobinski P, Silva ND, Panthou G, Bastin S, Muller CJ, Ahrens B, Borga M,
Conte D, Fosser G, Giorgi F, Güttler I, Kotroni V, Li L, Morin E, Önol B, Quintana-Segui
P, Romera R, Torma CZ. 2018. Scaling precipitation extremes with temperature in
the Mediterranean: Past climate assessment and projection in anthropogenic scenarios.
Climate Dynamics. 51(3), 1237–1257.'
mla: 'Drobinski, Philippe, et al. “Scaling Precipitation Extremes with Temperature
in the Mediterranean: Past Climate Assessment and Projection in Anthropogenic
Scenarios.” Climate Dynamics, vol. 51, no. 3, Springer Nature, 2018, pp.
1237–57, doi:10.1007/s00382-016-3083-x.'
short: P. Drobinski, N.D. Silva, G. Panthou, S. Bastin, C.J. Muller, B. Ahrens,
M. Borga, D. Conte, G. Fosser, F. Giorgi, I. Güttler, V. Kotroni, L. Li, E. Morin,
B. Önol, P. Quintana-Segui, R. Romera, C.Z. Torma, Climate Dynamics 51 (2018)
1237–1257.
date_created: 2021-02-15T14:18:53Z
date_published: 2018-08-01T00:00:00Z
date_updated: 2022-01-24T12:40:40Z
day: '01'
doi: 10.1007/s00382-016-3083-x
extern: '1'
intvolume: ' 51'
issue: '3'
keyword:
- Atmospheric Science
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1007/s00382-016-3083-x
month: '08'
oa: 1
oa_version: Published Version
page: 1237-1257
publication: Climate Dynamics
publication_identifier:
issn:
- 0930-7575
- 1432-0894
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: 'Scaling precipitation extremes with temperature in the Mediterranean: Past
climate assessment and projection in anthropogenic scenarios'
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 51
year: '2018'
...
---
_id: '9134'
abstract:
- lang: eng
text: Several studies have shown the existence of a critical latitude where the
dissipation of internal tides is strongly enhanced. Internal tides are internal
waves generated by barotropic tidal currents impinging rough topography at the
seafloor. Their dissipation and concomitant diapycnal mixing are believed to be
important for water masses and the large‐scale ocean circulation. The purpose
of this study is to clarify the physical processes at the origin of this strong
latitudinal dependence of tidal energy dissipation. We find that different mechanisms
are involved equatorward and poleward of the critical latitude. Triadic resonant
instabilities are responsible for the dissipation of internal tides equatorward
of the critical latitude. In particular, a dominant triad involving the primary
internal tide and near‐inertial waves is key. At the critical latitude, the peak
of energy dissipation is explained by both increased instability growth rates,
and smaller scales of secondary waves thus more prone to break and dissipate their
energy. Surprisingly, poleward of the critical latitude, the generation of evanescent
waves appears to be crucial. Triadic instabilities have been widely studied, but
the transfer of energy to evanescent waves has received comparatively little attention.
Our work suggests that the nonlinear transfer of energy from the internal tide
to evanescent waves (corresponding to the 2f‐pump mechanism described by Young
et al., 2008, https://doi.org/10.1017/S0022112008001742) is an efficient mechanism
to dissipate internal tide energy near and poleward of the critical latitude.
The theoretical results are confirmed in idealized high‐resolution numerical simulations
of a barotropic M2 tide impinging sinusoidal topography in a linearly stratified
fluid.
article_processing_charge: No
article_type: original
author:
- first_name: O.
full_name: Richet, O.
last_name: Richet
- first_name: J.-M.
full_name: Chomaz, J.-M.
last_name: Chomaz
- first_name: Caroline J
full_name: Muller, Caroline J
id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
last_name: Muller
orcid: 0000-0001-5836-5350
citation:
ama: 'Richet O, Chomaz J-M, Muller CJ. Internal tide dissipation at topography:
Triadic resonant instability equatorward and evanescent waves poleward of the
critical latitude. Journal of Geophysical Research: Oceans. 2018;123(9):6136-6155.
doi:10.1029/2017jc013591'
apa: 'Richet, O., Chomaz, J.-M., & Muller, C. J. (2018). Internal tide dissipation
at topography: Triadic resonant instability equatorward and evanescent waves poleward
of the critical latitude. Journal of Geophysical Research: Oceans. American
Geophysical Union. https://doi.org/10.1029/2017jc013591'
chicago: 'Richet, O., J.-M. Chomaz, and Caroline J Muller. “Internal Tide Dissipation
at Topography: Triadic Resonant Instability Equatorward and Evanescent Waves Poleward
of the Critical Latitude.” Journal of Geophysical Research: Oceans. American
Geophysical Union, 2018. https://doi.org/10.1029/2017jc013591.'
ieee: 'O. Richet, J.-M. Chomaz, and C. J. Muller, “Internal tide dissipation at
topography: Triadic resonant instability equatorward and evanescent waves poleward
of the critical latitude,” Journal of Geophysical Research: Oceans, vol.
123, no. 9. American Geophysical Union, pp. 6136–6155, 2018.'
ista: 'Richet O, Chomaz J-M, Muller CJ. 2018. Internal tide dissipation at topography:
Triadic resonant instability equatorward and evanescent waves poleward of the
critical latitude. Journal of Geophysical Research: Oceans. 123(9), 6136–6155.'
mla: 'Richet, O., et al. “Internal Tide Dissipation at Topography: Triadic Resonant
Instability Equatorward and Evanescent Waves Poleward of the Critical Latitude.”
Journal of Geophysical Research: Oceans, vol. 123, no. 9, American Geophysical
Union, 2018, pp. 6136–55, doi:10.1029/2017jc013591.'
short: 'O. Richet, J.-M. Chomaz, C.J. Muller, Journal of Geophysical Research: Oceans
123 (2018) 6136–6155.'
date_created: 2021-02-15T14:17:25Z
date_published: 2018-09-01T00:00:00Z
date_updated: 2022-01-24T12:39:03Z
day: '01'
doi: 10.1029/2017jc013591
extern: '1'
intvolume: ' 123'
issue: '9'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1029/2017JC013591
month: '09'
oa: 1
oa_version: Published Version
page: 6136-6155
publication: 'Journal of Geophysical Research: Oceans'
publication_identifier:
issn:
- 2169-9275
publication_status: published
publisher: American Geophysical Union
quality_controlled: '1'
status: public
title: 'Internal tide dissipation at topography: Triadic resonant instability equatorward
and evanescent waves poleward of the critical latitude'
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 123
year: '2018'
...
---
_id: '9135'
abstract:
- lang: eng
text: Idealized simulations of tropical moist convection have revealed that clouds
can spontaneously clump together in a process called self-aggregation. This results
in a state where a moist cloudy region with intense deep convection is surrounded
by extremely dry subsiding air devoid of deep convection. Because of the idealized
settings of the simulations where it was discovered, the relevance of self-aggregation
to the real world is still debated. Here, we show that self-aggregation feedbacks
play a leading-order role in the spontaneous genesis of tropical cyclones in cloud-resolving
simulations. Those feedbacks accelerate the cyclogenesis process by a factor of
2, and the feedbacks contributing to the cyclone formation show qualitative and
quantitative agreement with the self-aggregation process. Once the cyclone is
formed, wind-induced surface heat exchange (WISHE) effects dominate, although
we find that self-aggregation feedbacks have a small but nonnegligible contribution
to the maintenance of the mature cyclone. Our results suggest that self-aggregation,
and the framework developed for its study, can help shed more light into the physical
processes leading to cyclogenesis and cyclone intensification. In particular,
our results point out the importance of the longwave radiative cooling outside
the cyclone.
article_processing_charge: No
article_type: original
author:
- first_name: Caroline J
full_name: Muller, Caroline J
id: f978ccb0-3f7f-11eb-b193-b0e2bd13182b
last_name: Muller
orcid: 0000-0001-5836-5350
- first_name: David M.
full_name: Romps, David M.
last_name: Romps
citation:
ama: Muller CJ, Romps DM. Acceleration of tropical cyclogenesis by self-aggregation
feedbacks. Proceedings of the National Academy of Sciences. 2018;115(12):2930-2935.
doi:10.1073/pnas.1719967115
apa: Muller, C. J., & Romps, D. M. (2018). Acceleration of tropical cyclogenesis
by self-aggregation feedbacks. Proceedings of the National Academy of Sciences.
Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.1719967115
chicago: Muller, Caroline J, and David M. Romps. “Acceleration of Tropical Cyclogenesis
by Self-Aggregation Feedbacks.” Proceedings of the National Academy of Sciences.
Proceedings of the National Academy of Sciences, 2018. https://doi.org/10.1073/pnas.1719967115.
ieee: C. J. Muller and D. M. Romps, “Acceleration of tropical cyclogenesis by self-aggregation
feedbacks,” Proceedings of the National Academy of Sciences, vol. 115,
no. 12. Proceedings of the National Academy of Sciences, pp. 2930–2935, 2018.
ista: Muller CJ, Romps DM. 2018. Acceleration of tropical cyclogenesis by self-aggregation
feedbacks. Proceedings of the National Academy of Sciences. 115(12), 2930–2935.
mla: Muller, Caroline J., and David M. Romps. “Acceleration of Tropical Cyclogenesis
by Self-Aggregation Feedbacks.” Proceedings of the National Academy of Sciences,
vol. 115, no. 12, Proceedings of the National Academy of Sciences, 2018, pp. 2930–35,
doi:10.1073/pnas.1719967115.
short: C.J. Muller, D.M. Romps, Proceedings of the National Academy of Sciences
115 (2018) 2930–2935.
date_created: 2021-02-15T14:18:16Z
date_published: 2018-03-20T00:00:00Z
date_updated: 2022-01-24T12:39:49Z
day: '20'
doi: 10.1073/pnas.1719967115
extern: '1'
intvolume: ' 115'
issue: '12'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1073/pnas.1719967115
month: '03'
oa: 1
oa_version: Published Version
page: 2930-2935
publication: Proceedings of the National Academy of Sciences
publication_identifier:
issn:
- 0027-8424
- 1091-6490
publication_status: published
publisher: Proceedings of the National Academy of Sciences
quality_controlled: '1'
status: public
title: Acceleration of tropical cyclogenesis by self-aggregation feedbacks
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 115
year: '2018'
...
---
_id: '9471'
abstract:
- lang: eng
text: The DEMETER (DME) DNA glycosylase catalyzes genome-wide DNA demethylation
and is required for endosperm genomic imprinting and embryo viability. Targets
of DME-mediated DNA demethylation reside in small, euchromatic, AT-rich transposons
and at the boundaries of large transposons, but how DME interacts with these diverse
chromatin states is unknown. The STRUCTURE SPECIFIC RECOGNITION PROTEIN 1 (SSRP1)
subunit of the chromatin remodeler FACT (facilitates chromatin transactions),
was previously shown to be involved in the DME-dependent regulation of genomic
imprinting in Arabidopsis endosperm. Therefore, to investigate the interaction
between DME and chromatin, we focused on the activity of the two FACT subunits,
SSRP1 and SUPPRESSOR of TY16 (SPT16), during reproduction in Arabidopsis. We found
that FACT colocalizes with nuclear DME in vivo, and that DME has two classes of
target sites, the first being euchromatic and accessible to DME, but the second,
representing over half of DME targets, requiring the action of FACT for DME-mediated
DNA demethylation genome-wide. Our results show that the FACT-dependent DME targets
are GC-rich heterochromatin domains with high nucleosome occupancy enriched with
H3K9me2 and H3K27me1. Further, we demonstrate that heterochromatin-associated
linker histone H1 specifically mediates the requirement for FACT at a subset of
DME-target loci. Overall, our results demonstrate that FACT is required for DME
targeting by facilitating its access to heterochromatin.
article_processing_charge: No
article_type: original
author:
- first_name: Jennifer M.
full_name: Frost, Jennifer M.
last_name: Frost
- first_name: M. Yvonne
full_name: Kim, M. Yvonne
last_name: Kim
- first_name: Guen Tae
full_name: Park, Guen Tae
last_name: Park
- first_name: Ping-Hung
full_name: Hsieh, Ping-Hung
last_name: Hsieh
- first_name: Miyuki
full_name: Nakamura, Miyuki
last_name: Nakamura
- first_name: Samuel J. H.
full_name: Lin, Samuel J. H.
last_name: Lin
- first_name: Hyunjin
full_name: Yoo, Hyunjin
last_name: Yoo
- first_name: Jaemyung
full_name: Choi, Jaemyung
last_name: Choi
- first_name: Yoko
full_name: Ikeda, Yoko
last_name: Ikeda
- first_name: Tetsu
full_name: Kinoshita, Tetsu
last_name: Kinoshita
- first_name: Yeonhee
full_name: Choi, Yeonhee
last_name: Choi
- first_name: Daniel
full_name: Zilberman, Daniel
id: 6973db13-dd5f-11ea-814e-b3e5455e9ed1
last_name: Zilberman
orcid: 0000-0002-0123-8649
- first_name: Robert L.
full_name: Fischer, Robert L.
last_name: Fischer
citation:
ama: Frost JM, Kim MY, Park GT, et al. FACT complex is required for DNA demethylation
at heterochromatin during reproduction in Arabidopsis. Proceedings of the National
Academy of Sciences. 2018;115(20):E4720-E4729. doi:10.1073/pnas.1713333115
apa: Frost, J. M., Kim, M. Y., Park, G. T., Hsieh, P.-H., Nakamura, M., Lin, S.
J. H., … Fischer, R. L. (2018). FACT complex is required for DNA demethylation
at heterochromatin during reproduction in Arabidopsis. Proceedings of the National
Academy of Sciences. National Academy of Sciences. https://doi.org/10.1073/pnas.1713333115
chicago: Frost, Jennifer M., M. Yvonne Kim, Guen Tae Park, Ping-Hung Hsieh, Miyuki
Nakamura, Samuel J. H. Lin, Hyunjin Yoo, et al. “FACT Complex Is Required for
DNA Demethylation at Heterochromatin during Reproduction in Arabidopsis.” Proceedings
of the National Academy of Sciences. National Academy of Sciences, 2018. https://doi.org/10.1073/pnas.1713333115.
ieee: J. M. Frost et al., “FACT complex is required for DNA demethylation
at heterochromatin during reproduction in Arabidopsis,” Proceedings of the
National Academy of Sciences, vol. 115, no. 20. National Academy of Sciences,
pp. E4720–E4729, 2018.
ista: Frost JM, Kim MY, Park GT, Hsieh P-H, Nakamura M, Lin SJH, Yoo H, Choi J,
Ikeda Y, Kinoshita T, Choi Y, Zilberman D, Fischer RL. 2018. FACT complex is required
for DNA demethylation at heterochromatin during reproduction in Arabidopsis. Proceedings
of the National Academy of Sciences. 115(20), E4720–E4729.
mla: Frost, Jennifer M., et al. “FACT Complex Is Required for DNA Demethylation
at Heterochromatin during Reproduction in Arabidopsis.” Proceedings of the
National Academy of Sciences, vol. 115, no. 20, National Academy of Sciences,
2018, pp. E4720–29, doi:10.1073/pnas.1713333115.
short: J.M. Frost, M.Y. Kim, G.T. Park, P.-H. Hsieh, M. Nakamura, S.J.H. Lin, H.
Yoo, J. Choi, Y. Ikeda, T. Kinoshita, Y. Choi, D. Zilberman, R.L. Fischer, Proceedings
of the National Academy of Sciences 115 (2018) E4720–E4729.
date_created: 2021-06-07T06:11:28Z
date_published: 2018-05-15T00:00:00Z
date_updated: 2021-12-14T07:53:40Z
day: '15'
ddc:
- '580'
department:
- _id: DaZi
doi: 10.1073/pnas.1713333115
extern: '1'
external_id:
pmid:
- '29712855'
file:
- access_level: open_access
checksum: 810260dc0e3cc3033e15c19ad0dc123e
content_type: application/pdf
creator: asandaue
date_created: 2021-06-07T06:16:38Z
date_updated: 2021-06-07T06:16:38Z
file_id: '9472'
file_name: 2018_PNAS_Frost.pdf
file_size: 3045260
relation: main_file
success: 1
file_date_updated: 2021-06-07T06:16:38Z
has_accepted_license: '1'
intvolume: ' 115'
issue: '20'
keyword:
- Multidisciplinary
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: E4720-E4729
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
eissn:
- 1091-6490
issn:
- 0027-8424
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
related_material:
link:
- relation: earlier_version
url: 'https://doi.org/10.1101/187674 '
scopus_import: '1'
status: public
title: FACT complex is required for DNA demethylation at heterochromatin during reproduction
in Arabidopsis
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 115
year: '2018'
...
---
_id: '95'
abstract:
- lang: eng
text: Electrostatic charging of insulating fine particles can be responsible for
numerous phenomena ranging from lightning in volcanic plumes to dust explosions.
However, even basic aspects of how fine particles become charged are still unclear.
Studying particle charging is challenging because it usually involves the complexities
associated with many-particle collisions. To address these issues, we introduce
a method based on acoustic levitation, which makes it possible to initiate sequences
of repeated collisions of a single submillimeter particle with a flat plate, and
to precisely measure the particle charge in situ after each collision. We show
that collisional charge transfer between insulators is dependent on the hydrophobicity
of the contacting surfaces. We use glass, which we modify by attaching nonpolar
molecules to the particle, the plate, or both. We find that hydrophilic surfaces
develop significant positive charges after contacting hydrophobic surfaces. Moreover,
we demonstrate that charging between a hydrophilic and a hydrophobic surface is
suppressed in an acidic environment and enhanced in a basic one. Application of
an electric field during each collision is found to modify the charge transfer,
again depending on surface hydrophobicity. We discuss these results within the
context of contact charging due to ion transfer, and we show that they lend strong
support to OH− ions as the charge carriers.
article_number: '035602'
author:
- first_name: Victor
full_name: Lee, Victor
last_name: Lee
- first_name: Nicole
full_name: James, Nicole
last_name: James
- first_name: Scott R
full_name: Waitukaitis, Scott R
id: 3A1FFC16-F248-11E8-B48F-1D18A9856A87
last_name: Waitukaitis
orcid: 0000-0002-2299-3176
- first_name: Heinrich
full_name: Jaeger, Heinrich
last_name: Jaeger
citation:
ama: 'Lee V, James N, Waitukaitis SR, Jaeger H. Collisional charging of individual
submillimeter particles: Using ultrasonic levitation to initiate and track charge
transfer. Physical Review Materials. 2018;2(3). doi:10.1103/PhysRevMaterials.2.035602'
apa: 'Lee, V., James, N., Waitukaitis, S. R., & Jaeger, H. (2018). Collisional
charging of individual submillimeter particles: Using ultrasonic levitation to
initiate and track charge transfer. Physical Review Materials. American
Physical Society. https://doi.org/10.1103/PhysRevMaterials.2.035602'
chicago: 'Lee, Victor, Nicole James, Scott R Waitukaitis, and Heinrich Jaeger. “Collisional
Charging of Individual Submillimeter Particles: Using Ultrasonic Levitation to
Initiate and Track Charge Transfer.” Physical Review Materials. American
Physical Society, 2018. https://doi.org/10.1103/PhysRevMaterials.2.035602.'
ieee: 'V. Lee, N. James, S. R. Waitukaitis, and H. Jaeger, “Collisional charging
of individual submillimeter particles: Using ultrasonic levitation to initiate
and track charge transfer,” Physical Review Materials, vol. 2, no. 3. American
Physical Society, 2018.'
ista: 'Lee V, James N, Waitukaitis SR, Jaeger H. 2018. Collisional charging of individual
submillimeter particles: Using ultrasonic levitation to initiate and track charge
transfer. Physical Review Materials. 2(3), 035602.'
mla: 'Lee, Victor, et al. “Collisional Charging of Individual Submillimeter Particles:
Using Ultrasonic Levitation to Initiate and Track Charge Transfer.” Physical
Review Materials, vol. 2, no. 3, 035602, American Physical Society, 2018,
doi:10.1103/PhysRevMaterials.2.035602.'
short: V. Lee, N. James, S.R. Waitukaitis, H. Jaeger, Physical Review Materials
2 (2018).
date_created: 2018-12-11T11:44:36Z
date_published: 2018-03-29T00:00:00Z
date_updated: 2021-01-12T08:22:09Z
day: '29'
doi: 10.1103/PhysRevMaterials.2.035602
extern: '1'
external_id:
arxiv:
- '1801.09278'
intvolume: ' 2'
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1801.09278
month: '03'
oa: 1
oa_version: Preprint
publication: Physical Review Materials
publication_status: published
publisher: American Physical Society
publist_id: '7959'
quality_controlled: '1'
status: public
title: 'Collisional charging of individual submillimeter particles: Using ultrasonic
levitation to initiate and track charge transfer'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2018'
...
---
_id: '9567'
abstract:
- lang: eng
text: Let P be a graph property which is preserved by removal of edges, and consider
the random graph process that starts with the empty n-vertex graph and then adds
edges one-by-one, each chosen uniformly at random subject to the constraint that
P is not violated. These types of random processes have been the subject of extensive
research over the last 20 years, having striking applications in extremal combinatorics,
and leading to the discovery of important probabilistic tools. In this paper we
consider the k-matching-free process, where P is the property of not containing
a matching of size k. We are able to analyse the behaviour of this process for
a wide range of values of k; in particular we prove that if k=o(n) or if n−2k=o(n−−√/logn)
then this process is likely to terminate in a k-matching-free graph with the maximum
possible number of edges, as characterised by Erdős and Gallai. We also show that
these bounds on k are essentially best possible, and we make a first step towards
understanding the behaviour of the process in the intermediate regime.
article_processing_charge: No
article_type: original
author:
- first_name: Michael
full_name: Krivelevich, Michael
last_name: Krivelevich
- first_name: Matthew Alan
full_name: Kwan, Matthew Alan
id: 5fca0887-a1db-11eb-95d1-ca9d5e0453b3
last_name: Kwan
orcid: 0000-0002-4003-7567
- first_name: Po‐Shen
full_name: Loh, Po‐Shen
last_name: Loh
- first_name: Benny
full_name: Sudakov, Benny
last_name: Sudakov
citation:
ama: Krivelevich M, Kwan MA, Loh P, Sudakov B. The random k‐matching‐free process.
Random Structures and Algorithms. 2018;53(4):692-716. doi:10.1002/rsa.20814
apa: Krivelevich, M., Kwan, M. A., Loh, P., & Sudakov, B. (2018). The random
k‐matching‐free process. Random Structures and Algorithms. Wiley. https://doi.org/10.1002/rsa.20814
chicago: Krivelevich, Michael, Matthew Alan Kwan, Po‐Shen Loh, and Benny Sudakov.
“The Random K‐matching‐free Process.” Random Structures and Algorithms.
Wiley, 2018. https://doi.org/10.1002/rsa.20814.
ieee: M. Krivelevich, M. A. Kwan, P. Loh, and B. Sudakov, “The random k‐matching‐free
process,” Random Structures and Algorithms, vol. 53, no. 4. Wiley, pp.
692–716, 2018.
ista: Krivelevich M, Kwan MA, Loh P, Sudakov B. 2018. The random k‐matching‐free
process. Random Structures and Algorithms. 53(4), 692–716.
mla: Krivelevich, Michael, et al. “The Random K‐matching‐free Process.” Random
Structures and Algorithms, vol. 53, no. 4, Wiley, 2018, pp. 692–716, doi:10.1002/rsa.20814.
short: M. Krivelevich, M.A. Kwan, P. Loh, B. Sudakov, Random Structures and Algorithms
53 (2018) 692–716.
date_created: 2021-06-18T12:37:40Z
date_published: 2018-12-01T00:00:00Z
date_updated: 2023-02-23T14:01:07Z
day: '01'
doi: 10.1002/rsa.20814
extern: '1'
external_id:
arxiv:
- '1708.01054'
intvolume: ' 53'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1708.01054
month: '12'
oa: 1
oa_version: Preprint
page: 692-716
publication: Random Structures and Algorithms
publication_identifier:
eissn:
- 1098-2418
issn:
- 1042-9832
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: The random k‐matching‐free process
type: journal_article
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 53
year: '2018'
...
---
_id: '9565'
abstract:
- lang: eng
text: Let D(n,p) be the random directed graph on n vertices where each of the n(n-1)
possible arcs is present independently with probability p. A celebrated result
of Frieze shows that if p≥(logn+ω(1))/n then D(n,p) typically has a directed Hamilton
cycle, and this is best possible. In this paper, we obtain a strengthening of
this result, showing that under the same condition, the number of directed Hamilton
cycles in D(n,p) is typically n!(p(1+o(1)))n. We also prove a hitting-time version
of this statement, showing that in the random directed graph process, as soon
as every vertex has in-/out-degrees at least 1, there are typically n!(logn/n(1+o(1)))n
directed Hamilton cycles.
article_processing_charge: No
article_type: original
author:
- first_name: Asaf
full_name: Ferber, Asaf
last_name: Ferber
- first_name: Matthew Alan
full_name: Kwan, Matthew Alan
id: 5fca0887-a1db-11eb-95d1-ca9d5e0453b3
last_name: Kwan
orcid: 0000-0002-4003-7567
- first_name: Benny
full_name: Sudakov, Benny
last_name: Sudakov
citation:
ama: Ferber A, Kwan MA, Sudakov B. Counting Hamilton cycles in sparse random directed
graphs. Random Structures and Algorithms. 2018;53(4):592-603. doi:10.1002/rsa.20815
apa: Ferber, A., Kwan, M. A., & Sudakov, B. (2018). Counting Hamilton cycles
in sparse random directed graphs. Random Structures and Algorithms. Wiley.
https://doi.org/10.1002/rsa.20815
chicago: Ferber, Asaf, Matthew Alan Kwan, and Benny Sudakov. “Counting Hamilton
Cycles in Sparse Random Directed Graphs.” Random Structures and Algorithms.
Wiley, 2018. https://doi.org/10.1002/rsa.20815.
ieee: A. Ferber, M. A. Kwan, and B. Sudakov, “Counting Hamilton cycles in sparse
random directed graphs,” Random Structures and Algorithms, vol. 53, no.
4. Wiley, pp. 592–603, 2018.
ista: Ferber A, Kwan MA, Sudakov B. 2018. Counting Hamilton cycles in sparse random
directed graphs. Random Structures and Algorithms. 53(4), 592–603.
mla: Ferber, Asaf, et al. “Counting Hamilton Cycles in Sparse Random Directed Graphs.”
Random Structures and Algorithms, vol. 53, no. 4, Wiley, 2018, pp. 592–603,
doi:10.1002/rsa.20815.
short: A. Ferber, M.A. Kwan, B. Sudakov, Random Structures and Algorithms 53 (2018)
592–603.
date_created: 2021-06-18T12:06:28Z
date_published: 2018-12-01T00:00:00Z
date_updated: 2023-02-23T14:01:03Z
day: '01'
doi: 10.1002/rsa.20815
extern: '1'
external_id:
arxiv:
- '1708.07746'
intvolume: ' 53'
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1708.07746
month: '12'
oa: 1
oa_version: Preprint
page: 592-603
publication: Random Structures and Algorithms
publication_identifier:
eissn:
- 1098-2418
issn:
- 1042-9832
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Counting Hamilton cycles in sparse random directed graphs
type: journal_article
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 53
year: '2018'
...
---
_id: '9568'
abstract:
- lang: eng
text: An intercalate in a Latin square is a 2×2 Latin subsquare. Let N be the number
of intercalates in a uniformly random n×n Latin square. We prove that asymptotically
almost surely N≥(1−o(1))n2/4, and that EN≤(1+o(1))n2/2 (therefore asymptotically
almost surely N≤fn2 for any f→∞). This significantly improves the previous best
lower and upper bounds. We also give an upper tail bound for the number of intercalates
in two fixed rows of a random Latin square. In addition, we discuss a problem
of Linial and Luria on low-discrepancy Latin squares.
article_processing_charge: No
article_type: original
author:
- first_name: Matthew Alan
full_name: Kwan, Matthew Alan
id: 5fca0887-a1db-11eb-95d1-ca9d5e0453b3
last_name: Kwan
orcid: 0000-0002-4003-7567
- first_name: Benny
full_name: Sudakov, Benny
last_name: Sudakov
citation:
ama: Kwan MA, Sudakov B. Intercalates and discrepancy in random Latin squares. Random
Structures and Algorithms. 2018;52(2):181-196. doi:10.1002/rsa.20742
apa: Kwan, M. A., & Sudakov, B. (2018). Intercalates and discrepancy in random
Latin squares. Random Structures and Algorithms. Wiley. https://doi.org/10.1002/rsa.20742
chicago: Kwan, Matthew Alan, and Benny Sudakov. “Intercalates and Discrepancy in
Random Latin Squares.” Random Structures and Algorithms. Wiley, 2018. https://doi.org/10.1002/rsa.20742.
ieee: M. A. Kwan and B. Sudakov, “Intercalates and discrepancy in random Latin squares,”
Random Structures and Algorithms, vol. 52, no. 2. Wiley, pp. 181–196, 2018.
ista: Kwan MA, Sudakov B. 2018. Intercalates and discrepancy in random Latin squares.
Random Structures and Algorithms. 52(2), 181–196.
mla: Kwan, Matthew Alan, and Benny Sudakov. “Intercalates and Discrepancy in Random
Latin Squares.” Random Structures and Algorithms, vol. 52, no. 2, Wiley,
2018, pp. 181–96, doi:10.1002/rsa.20742.
short: M.A. Kwan, B. Sudakov, Random Structures and Algorithms 52 (2018) 181–196.
date_created: 2021-06-18T12:47:25Z
date_published: 2018-03-01T00:00:00Z
date_updated: 2023-02-23T14:01:09Z
day: '01'
doi: 10.1002/rsa.20742
extern: '1'
external_id:
arxiv:
- '1607.04981'
intvolume: ' 52'
issue: '2'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1607.04981
month: '03'
oa: 1
oa_version: Preprint
page: 181-196
publication: Random Structures and Algorithms
publication_identifier:
eissn:
- 1098-2418
issn:
- 1042-9832
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Intercalates and discrepancy in random Latin squares
type: journal_article
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 52
year: '2018'
...
---
_id: '9587'
abstract:
- lang: eng
text: We say a family of sets is intersecting if any two of its sets intersect,
and we say it is trivially intersecting if there is an element which appears in
every set of the family. In this paper we study the maximum size of a non-trivially
intersecting family in a natural “multi-part” setting. Here the ground set is
divided into parts, and one considers families of sets whose intersection with
each part is of a prescribed size. Our work is motivated by classical results
in the single-part setting due to Erdős, Ko and Rado, and Hilton and Milner, and
by a theorem of Frankl concerning intersecting families in this multi-part setting.
In the case where the part sizes are sufficiently large we determine the maximum
size of a non-trivially intersecting multi-part family, disproving a conjecture
of Alon and Katona.
article_processing_charge: No
article_type: original
author:
- first_name: Matthew Alan
full_name: Kwan, Matthew Alan
id: 5fca0887-a1db-11eb-95d1-ca9d5e0453b3
last_name: Kwan
orcid: 0000-0002-4003-7567
- first_name: Benny
full_name: Sudakov, Benny
last_name: Sudakov
- first_name: Pedro
full_name: Vieira, Pedro
last_name: Vieira
citation:
ama: Kwan MA, Sudakov B, Vieira P. Non-trivially intersecting multi-part families.
Journal of Combinatorial Theory Series A. 2018;156:44-60. doi:10.1016/j.jcta.2017.12.001
apa: Kwan, M. A., Sudakov, B., & Vieira, P. (2018). Non-trivially intersecting
multi-part families. Journal of Combinatorial Theory Series A. Elsevier.
https://doi.org/10.1016/j.jcta.2017.12.001
chicago: Kwan, Matthew Alan, Benny Sudakov, and Pedro Vieira. “Non-Trivially Intersecting
Multi-Part Families.” Journal of Combinatorial Theory Series A. Elsevier,
2018. https://doi.org/10.1016/j.jcta.2017.12.001.
ieee: M. A. Kwan, B. Sudakov, and P. Vieira, “Non-trivially intersecting multi-part
families,” Journal of Combinatorial Theory Series A, vol. 156. Elsevier,
pp. 44–60, 2018.
ista: Kwan MA, Sudakov B, Vieira P. 2018. Non-trivially intersecting multi-part
families. Journal of Combinatorial Theory Series A. 156, 44–60.
mla: Kwan, Matthew Alan, et al. “Non-Trivially Intersecting Multi-Part Families.”
Journal of Combinatorial Theory Series A, vol. 156, Elsevier, 2018, pp.
44–60, doi:10.1016/j.jcta.2017.12.001.
short: M.A. Kwan, B. Sudakov, P. Vieira, Journal of Combinatorial Theory Series
A 156 (2018) 44–60.
date_created: 2021-06-22T11:42:48Z
date_published: 2018-05-01T00:00:00Z
date_updated: 2023-02-23T14:01:55Z
day: '01'
doi: 10.1016/j.jcta.2017.12.001
extern: '1'
external_id:
arxiv:
- '1703.09946'
intvolume: ' 156'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1703.09946
month: '05'
oa: 1
oa_version: Preprint
page: 44-60
publication: Journal of Combinatorial Theory Series A
publication_identifier:
issn:
- 0097-3165
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Non-trivially intersecting multi-part families
type: journal_article
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 156
year: '2018'
...
---
_id: '9665'
abstract:
- lang: eng
text: We investigate the thermodynamics and kinetics of a hydrogen interstitial
in magnetic α-iron, taking account of the quantum fluctuations of the proton as
well as the anharmonicities of lattice vibrations and hydrogen hopping. We show
that the diffusivity of hydrogen in the lattice of bcc iron deviates strongly
from an Arrhenius behavior at and below room temperature. We compare a quantum
transition state theory to explicit ring polymer molecular dynamics in the calculation
of diffusivity. We then address the trapping of hydrogen by a vacancy as a prototype
lattice defect. By a sequence of steps in a thought experiment, each involving
a thermodynamic integration, we are able to separate out the binding free energy
of a proton to a defect into harmonic and anharmonic, and classical and quantum
contributions. We find that about 30% of a typical binding free energy of hydrogen
to a lattice defect in iron is accounted for by finite temperature effects, and
about half of these arise from quantum proton fluctuations. This has huge implications
for the comparison between thermal desorption and permeation experiments and standard
electronic structure theory. The implications are even greater for the interpretation
of muon spin resonance experiments.
article_number: '225901'
article_processing_charge: No
article_type: review
author:
- first_name: Bingqing
full_name: Cheng, Bingqing
id: cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9
last_name: Cheng
orcid: 0000-0002-3584-9632
- first_name: Anthony T.
full_name: Paxton, Anthony T.
last_name: Paxton
- first_name: Michele
full_name: Ceriotti, Michele
last_name: Ceriotti
citation:
ama: 'Cheng B, Paxton AT, Ceriotti M. Hydrogen diffusion and trapping in α-iron:
The role of quantum and anharmonic fluctuations. Physical Review Letters.
2018;120(22). doi:10.1103/physrevlett.120.225901'
apa: 'Cheng, B., Paxton, A. T., & Ceriotti, M. (2018). Hydrogen diffusion and
trapping in α-iron: The role of quantum and anharmonic fluctuations. Physical
Review Letters. American Physical Society. https://doi.org/10.1103/physrevlett.120.225901'
chicago: 'Cheng, Bingqing, Anthony T. Paxton, and Michele Ceriotti. “Hydrogen Diffusion
and Trapping in α-Iron: The Role of Quantum and Anharmonic Fluctuations.” Physical
Review Letters. American Physical Society, 2018. https://doi.org/10.1103/physrevlett.120.225901.'
ieee: 'B. Cheng, A. T. Paxton, and M. Ceriotti, “Hydrogen diffusion and trapping
in α-iron: The role of quantum and anharmonic fluctuations,” Physical Review
Letters, vol. 120, no. 22. American Physical Society, 2018.'
ista: 'Cheng B, Paxton AT, Ceriotti M. 2018. Hydrogen diffusion and trapping in
α-iron: The role of quantum and anharmonic fluctuations. Physical Review Letters.
120(22), 225901.'
mla: 'Cheng, Bingqing, et al. “Hydrogen Diffusion and Trapping in α-Iron: The Role
of Quantum and Anharmonic Fluctuations.” Physical Review Letters, vol.
120, no. 22, 225901, American Physical Society, 2018, doi:10.1103/physrevlett.120.225901.'
short: B. Cheng, A.T. Paxton, M. Ceriotti, Physical Review Letters 120 (2018).
date_created: 2021-07-15T12:22:41Z
date_published: 2018-06-01T00:00:00Z
date_updated: 2021-08-09T12:36:22Z
day: '01'
doi: 10.1103/physrevlett.120.225901
extern: '1'
external_id:
arxiv:
- '1803.00600'
pmid:
- '29906144'
intvolume: ' 120'
issue: '22'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1803.00600
month: '06'
oa: 1
oa_version: Preprint
pmid: 1
publication: Physical Review Letters
publication_identifier:
eissn:
- 1079-7114
issn:
- 0031-9007
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Hydrogen diffusion and trapping in α-iron: The role of quantum and anharmonic
fluctuations'
type: journal_article
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 120
year: '2018'
...
---
_id: '9659'
abstract:
- lang: eng
text: The curvature dependence of interfacial free energy, which is crucial in quantitatively
predicting nucleation kinetics and the stability of bubbles and droplets, is quantified
by the Tolman length δ. For solid-liquid interfaces, however, δ has never been
computed directly due to various theoretical and practical challenges. Here we
perform a direct evaluation of the Tolman length from atomistic simulations of
a solid-liquid planar interface in out-of-equilibrium conditions, by first computing
the surface tension from the amplitude of thermal capillary fluctuations of a
localized version of the Gibbs dividing surface and by then calculating how much
the surface energy changes when it is defined relative to the equimolar dividing
surface. We computed δ for a model potential, and found a good agreement with
the values indirectly inferred from nucleation simulations. The agreement not
only validates our approach but also suggests that the nucleation free energy
of the system can be perfectly described using classical nucleation theory if
the Tolman length is taken into account.
article_number: '231102'
article_processing_charge: No
article_type: original
author:
- first_name: Bingqing
full_name: Cheng, Bingqing
id: cbe3cda4-d82c-11eb-8dc7-8ff94289fcc9
last_name: Cheng
orcid: 0000-0002-3584-9632
- first_name: Michele
full_name: Ceriotti, Michele
last_name: Ceriotti
citation:
ama: 'Cheng B, Ceriotti M. Communication: Computing the Tolman length for solid-liquid
interfaces. The Journal of Chemical Physics. 2018;148(23). doi:10.1063/1.5038396'
apa: 'Cheng, B., & Ceriotti, M. (2018). Communication: Computing the Tolman
length for solid-liquid interfaces. The Journal of Chemical Physics. AIP
Publishing. https://doi.org/10.1063/1.5038396'
chicago: 'Cheng, Bingqing, and Michele Ceriotti. “Communication: Computing the Tolman
Length for Solid-Liquid Interfaces.” The Journal of Chemical Physics. AIP
Publishing, 2018. https://doi.org/10.1063/1.5038396.'
ieee: 'B. Cheng and M. Ceriotti, “Communication: Computing the Tolman length for
solid-liquid interfaces,” The Journal of Chemical Physics, vol. 148, no.
23. AIP Publishing, 2018.'
ista: 'Cheng B, Ceriotti M. 2018. Communication: Computing the Tolman length for
solid-liquid interfaces. The Journal of Chemical Physics. 148(23), 231102.'
mla: 'Cheng, Bingqing, and Michele Ceriotti. “Communication: Computing the Tolman
Length for Solid-Liquid Interfaces.” The Journal of Chemical Physics, vol.
148, no. 23, 231102, AIP Publishing, 2018, doi:10.1063/1.5038396.'
short: B. Cheng, M. Ceriotti, The Journal of Chemical Physics 148 (2018).
date_created: 2021-07-15T07:51:42Z
date_published: 2018-06-21T00:00:00Z
date_updated: 2023-02-23T14:03:57Z
day: '21'
doi: 10.1063/1.5038396
extern: '1'
external_id:
arxiv:
- '1803.09140'
pmid:
- '29935495'
intvolume: ' 148'
issue: '23'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1063/1.5038396
month: '06'
oa: 1
oa_version: Submitted Version
pmid: 1
publication: The Journal of Chemical Physics
publication_identifier:
eissn:
- 1089-7690
issn:
- 0021-9606
publication_status: published
publisher: AIP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Communication: Computing the Tolman length for solid-liquid interfaces'
type: journal_article
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
volume: 148
year: '2018'
...
---
_id: '12603'
abstract:
- lang: eng
text: We present a field-data rich modelling analysis to reconstruct the climatic
forcing, glacier response, and runoff generation from a high-elevation catchment
in central Chile over the period 2000–2015 to provide insights into the differing
contributions of debris-covered and debris-free glaciers under current and future
changing climatic conditions. Model simulations with the physically based glacio-hydrological
model TOPKAPI-ETH reveal a period of neutral or slightly positive mass balance
between 2000 and 2010, followed by a transition to increasingly large annual mass
losses, associated with a recent mega drought. Mass losses commence earlier, and
are more severe, for a heavily debris-covered glacier, most likely due to its
strong dependence on snow avalanche accumulation, which has declined in recent
years. Catchment runoff shows a marked decreasing trend over the study period,
but with high interannual variability directly linked to winter snow accumulation,
and high contribution from ice melt in dry periods and drought conditions. The
study demonstrates the importance of incorporating local-scale processes such
as snow avalanche accumulation and spatially variable debris thickness, in understanding
the responses of different glacier types to climate change. We highlight the increased
dependency of runoff from high Andean catchments on the diminishing resource of
glacier ice during dry years.
article_processing_charge: No
article_type: original
author:
- first_name: Flavia
full_name: Burger, Flavia
last_name: Burger
- first_name: Alvaro
full_name: Ayala, Alvaro
last_name: Ayala
- first_name: David
full_name: Farias, David
last_name: Farias
- first_name: Thomas E.
full_name: Shaw, Thomas E.
last_name: Shaw
- first_name: Shelley
full_name: MacDonell, Shelley
last_name: MacDonell
- first_name: Ben
full_name: Brock, Ben
last_name: Brock
- first_name: James
full_name: McPhee, James
last_name: McPhee
- first_name: Francesca
full_name: Pellicciotti, Francesca
id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
last_name: Pellicciotti
citation:
ama: 'Burger F, Ayala A, Farias D, et al. Interannual variability in glacier contribution
to runoff from a high‐elevation Andean catchment: Understanding the role of debris
cover in glacier hydrology. Hydrological Processes. 2018;33(2):214-229.
doi:10.1002/hyp.13354'
apa: 'Burger, F., Ayala, A., Farias, D., Shaw, T. E., MacDonell, S., Brock, B.,
… Pellicciotti, F. (2018). Interannual variability in glacier contribution to
runoff from a high‐elevation Andean catchment: Understanding the role of debris
cover in glacier hydrology. Hydrological Processes. Wiley. https://doi.org/10.1002/hyp.13354'
chicago: 'Burger, Flavia, Alvaro Ayala, David Farias, Thomas E. Shaw, Shelley MacDonell,
Ben Brock, James McPhee, and Francesca Pellicciotti. “Interannual Variability
in Glacier Contribution to Runoff from a High‐elevation Andean Catchment: Understanding
the Role of Debris Cover in Glacier Hydrology.” Hydrological Processes.
Wiley, 2018. https://doi.org/10.1002/hyp.13354.'
ieee: 'F. Burger et al., “Interannual variability in glacier contribution
to runoff from a high‐elevation Andean catchment: Understanding the role of debris
cover in glacier hydrology,” Hydrological Processes, vol. 33, no. 2. Wiley,
pp. 214–229, 2018.'
ista: 'Burger F, Ayala A, Farias D, Shaw TE, MacDonell S, Brock B, McPhee J, Pellicciotti
F. 2018. Interannual variability in glacier contribution to runoff from a high‐elevation
Andean catchment: Understanding the role of debris cover in glacier hydrology.
Hydrological Processes. 33(2), 214–229.'
mla: 'Burger, Flavia, et al. “Interannual Variability in Glacier Contribution to
Runoff from a High‐elevation Andean Catchment: Understanding the Role of Debris
Cover in Glacier Hydrology.” Hydrological Processes, vol. 33, no. 2, Wiley,
2018, pp. 214–29, doi:10.1002/hyp.13354.'
short: F. Burger, A. Ayala, D. Farias, T.E. Shaw, S. MacDonell, B. Brock, J. McPhee,
F. Pellicciotti, Hydrological Processes 33 (2018) 214–229.
date_created: 2023-02-20T08:13:14Z
date_published: 2018-11-26T00:00:00Z
date_updated: 2023-02-28T11:49:36Z
day: '26'
doi: 10.1002/hyp.13354
extern: '1'
intvolume: ' 33'
issue: '2'
keyword:
- Water Science and Technology
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1002/hyp.13354
month: '11'
oa: 1
oa_version: Published Version
page: 214-229
publication: Hydrological Processes
publication_identifier:
eissn:
- 1099-1085
issn:
- 0885-6087
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Interannual variability in glacier contribution to runoff from a high‐elevation
Andean catchment: Understanding the role of debris cover in glacier hydrology'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 33
year: '2018'
...
---
_id: '12605'
abstract:
- lang: eng
text: Snow depth patterns over glaciers are controlled by precipitation, snow redistribution
due to wind and avalanches, and the exchange of energy with the atmosphere that
determines snow ablation. While many studies have advanced the understanding of
ablation processes, less is known about winter snow patterns and their variability
over glaciers. We analyze snow depth on Haut Glacier d'Arolla, Switzerland, in
the two winter seasons 2006–2007 and 2010–2011 to (1) understand whether snow
depth over an alpine glacier at the end of the accumulation season exhibits a
behavior similar to the one observed on single slopes and vegetated areas; and
(2) investigate the snow pattern consistency over the two accumulation seasons.
We perform this analysis on a data set of high-resolution lidar-derived snow depth
using variograms and fractal parameters. Our first main result is that snow depth
patterns on the glacier exhibit a multiscale behavior, with a scale break around
20 m after which the fractal dimension increases, indicating more autocorrelated
structure before the scale break than after. Second, this behavior is consistent
over the two years, with fractal parameters and their spatial variability almost
constant in the two seasons. We also show that snow depth patterns exhibit a distinct
behavior in the glacier tongue and the upper catchment, with longer correlation
distances on the tongue in the direction of the main winds, suggesting spatial
distinctions that are likely induced by different processes and that should be
taken into account when extrapolating snow depth from limited samples.
article_processing_charge: No
article_type: original
author:
- first_name: I.
full_name: Clemenzi, I.
last_name: Clemenzi
- first_name: Francesca
full_name: Pellicciotti, Francesca
id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
last_name: Pellicciotti
- first_name: P.
full_name: Burlando, P.
last_name: Burlando
citation:
ama: Clemenzi I, Pellicciotti F, Burlando P. Snow depth structure, fractal behavior,
and interannual consistency over Haut Glacier d’Arolla, Switzerland. Water
Resources Research. 2018;54(10):7929-7945. doi:10.1029/2017wr021606
apa: Clemenzi, I., Pellicciotti, F., & Burlando, P. (2018). Snow depth structure,
fractal behavior, and interannual consistency over Haut Glacier d’Arolla, Switzerland.
Water Resources Research. American Geophysical Union. https://doi.org/10.1029/2017wr021606
chicago: Clemenzi, I., Francesca Pellicciotti, and P. Burlando. “Snow Depth Structure,
Fractal Behavior, and Interannual Consistency over Haut Glacier d’Arolla, Switzerland.”
Water Resources Research. American Geophysical Union, 2018. https://doi.org/10.1029/2017wr021606.
ieee: I. Clemenzi, F. Pellicciotti, and P. Burlando, “Snow depth structure, fractal
behavior, and interannual consistency over Haut Glacier d’Arolla, Switzerland,”
Water Resources Research, vol. 54, no. 10. American Geophysical Union,
pp. 7929–7945, 2018.
ista: Clemenzi I, Pellicciotti F, Burlando P. 2018. Snow depth structure, fractal
behavior, and interannual consistency over Haut Glacier d’Arolla, Switzerland.
Water Resources Research. 54(10), 7929–7945.
mla: Clemenzi, I., et al. “Snow Depth Structure, Fractal Behavior, and Interannual
Consistency over Haut Glacier d’Arolla, Switzerland.” Water Resources Research,
vol. 54, no. 10, American Geophysical Union, 2018, pp. 7929–45, doi:10.1029/2017wr021606.
short: I. Clemenzi, F. Pellicciotti, P. Burlando, Water Resources Research 54 (2018)
7929–7945.
date_created: 2023-02-20T08:13:31Z
date_published: 2018-06-07T00:00:00Z
date_updated: 2023-02-28T11:42:40Z
day: '07'
doi: 10.1029/2017wr021606
extern: '1'
intvolume: ' 54'
issue: '10'
keyword:
- Water Science and Technology
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1029/2017WR021606
month: '06'
oa: 1
oa_version: Published Version
page: 7929-7945
publication: Water Resources Research
publication_identifier:
eissn:
- 1944-7973
issn:
- 0043-1397
publication_status: published
publisher: American Geophysical Union
quality_controlled: '1'
scopus_import: '1'
status: public
title: Snow depth structure, fractal behavior, and interannual consistency over Haut
Glacier d'Arolla, Switzerland
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 54
year: '2018'
...
---
_id: '12604'
abstract:
- lang: eng
text: Glaciers in the high mountains of Asia provide an important water resource
for millions of people. Many of these glaciers are partially covered by rocky
debris, which protects the ice from solar radiation and warm air. However, studies
have found that the surface of these debris-covered glaciers is actually lowering
as fast as glaciers without debris. Water ponded on the surface of the glaciers
may be partially responsible, as water can absorb atmospheric energy very efficiently.
However, the overall effect of these ponds has not been thoroughly assessed yet.
We study a valley in Nepal for which we have extensive weather measurements, and
we use a numerical model to calculate the energy absorbed by ponds on the surface
of the glaciers over 6 months. As we have not observed each individual pond thoroughly,
we run the model 5,000 times with different setups. We find that ponds are extremely
important for glacier melt and absorb energy 14 times as quickly as the debris-covered
ice. Although the ponds account for 1% of the glacier area covered by rocks, and
only 0.3% of the total glacier area, they absorb enough energy to account for
one eighth of the whole valley's ice loss.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Evan S.
full_name: Miles, Evan S.
last_name: Miles
- first_name: Ian
full_name: Willis, Ian
last_name: Willis
- first_name: Pascal
full_name: Buri, Pascal
last_name: Buri
- first_name: Jakob F.
full_name: Steiner, Jakob F.
last_name: Steiner
- first_name: Neil S.
full_name: Arnold, Neil S.
last_name: Arnold
- first_name: Francesca
full_name: Pellicciotti, Francesca
id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
last_name: Pellicciotti
citation:
ama: Miles ES, Willis I, Buri P, Steiner JF, Arnold NS, Pellicciotti F. Surface
pond energy absorption across four Himalayan Glaciers accounts for 1/8 of total
catchment ice loss. Geophysical Research Letters. 2018;45(19):10464-10473.
doi:10.1029/2018gl079678
apa: Miles, E. S., Willis, I., Buri, P., Steiner, J. F., Arnold, N. S., & Pellicciotti,
F. (2018). Surface pond energy absorption across four Himalayan Glaciers accounts
for 1/8 of total catchment ice loss. Geophysical Research Letters. American
Geophysical Union. https://doi.org/10.1029/2018gl079678
chicago: Miles, Evan S., Ian Willis, Pascal Buri, Jakob F. Steiner, Neil S. Arnold,
and Francesca Pellicciotti. “Surface Pond Energy Absorption across Four Himalayan
Glaciers Accounts for 1/8 of Total Catchment Ice Loss.” Geophysical Research
Letters. American Geophysical Union, 2018. https://doi.org/10.1029/2018gl079678.
ieee: E. S. Miles, I. Willis, P. Buri, J. F. Steiner, N. S. Arnold, and F. Pellicciotti,
“Surface pond energy absorption across four Himalayan Glaciers accounts for 1/8
of total catchment ice loss,” Geophysical Research Letters, vol. 45, no.
19. American Geophysical Union, pp. 10464–10473, 2018.
ista: Miles ES, Willis I, Buri P, Steiner JF, Arnold NS, Pellicciotti F. 2018. Surface
pond energy absorption across four Himalayan Glaciers accounts for 1/8 of total
catchment ice loss. Geophysical Research Letters. 45(19), 10464–10473.
mla: Miles, Evan S., et al. “Surface Pond Energy Absorption across Four Himalayan
Glaciers Accounts for 1/8 of Total Catchment Ice Loss.” Geophysical Research
Letters, vol. 45, no. 19, American Geophysical Union, 2018, pp. 10464–73,
doi:10.1029/2018gl079678.
short: E.S. Miles, I. Willis, P. Buri, J.F. Steiner, N.S. Arnold, F. Pellicciotti,
Geophysical Research Letters 45 (2018) 10464–10473.
date_created: 2023-02-20T08:13:18Z
date_published: 2018-10-18T00:00:00Z
date_updated: 2023-02-28T11:46:48Z
day: '18'
doi: 10.1029/2018gl079678
extern: '1'
intvolume: ' 45'
issue: '19'
keyword:
- General Earth and Planetary Sciences
- Geophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1029/2018GL079678
month: '10'
oa: 1
oa_version: Published Version
page: 10464-10473
publication: Geophysical Research Letters
publication_identifier:
eissn:
- 1944-8007
issn:
- 0094-8276
publication_status: published
publisher: American Geophysical Union
quality_controlled: '1'
scopus_import: '1'
status: public
title: Surface pond energy absorption across four Himalayan Glaciers accounts for
1/8 of total catchment ice loss
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 45
year: '2018'
...
---
_id: '12607'
abstract:
- lang: eng
text: Supraglacial ice cliffs exist on debris-covered glaciers worldwide, but despite
their importance as melt hot spots, their life cycle is little understood. Early
field observations had advanced a hypothesis of survival of north-facing and disappearance
of south-facing cliffs, which is central for predicting the contribution of cliffs
to total glacier mass losses. Their role as windows of energy transfer suggests
they may explain the anomalously high mass losses of debris-covered glaciers in
High Mountain Asia (HMA) despite the insulating debris, currently at the center
of a debated controversy. We use a 3D model of cliff evolution coupled to very
high-resolution topographic data to demonstrate that ice cliffs facing south (in
the Northern Hemisphere) disappear within a few months due to enhanced solar radiation
receipts and that aspect is the key control on cliffs evolution. We reproduce
continuous flattening of south-facing cliffs, a result of their vertical gradient
of incoming solar radiation and sky view factor. Our results establish that only
north-facing cliffs are recurrent features and thus stable contributors to the
melting of debris-covered glaciers. Satellite observations and mass balance modeling
confirms that few south-facing cliffs of small size exist on the glaciers of Langtang,
and their contribution to the glacier volume losses is very small (∼1%). This
has major implications for the mass balance of HMA debris-covered glaciers as
it provides the basis for new parameterizations of cliff evolution and distribution
to constrain volume losses in a region where glaciers are highly relevant as water
sources for millions of people.
article_processing_charge: No
article_type: original
author:
- first_name: Pascal
full_name: Buri, Pascal
last_name: Buri
- first_name: Francesca
full_name: Pellicciotti, Francesca
id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
last_name: Pellicciotti
citation:
ama: Buri P, Pellicciotti F. Aspect controls the survival of ice cliffs on debris-covered
glaciers. PNAS. 2018;115(17):4369-4374. doi:10.1073/pnas.1713892115
apa: Buri, P., & Pellicciotti, F. (2018). Aspect controls the survival of ice
cliffs on debris-covered glaciers. PNAS. Proceedings of the National Academy
of Sciences. https://doi.org/10.1073/pnas.1713892115
chicago: Buri, Pascal, and Francesca Pellicciotti. “Aspect Controls the Survival
of Ice Cliffs on Debris-Covered Glaciers.” PNAS. Proceedings of the National
Academy of Sciences, 2018. https://doi.org/10.1073/pnas.1713892115.
ieee: P. Buri and F. Pellicciotti, “Aspect controls the survival of ice cliffs on
debris-covered glaciers,” PNAS, vol. 115, no. 17. Proceedings of the National
Academy of Sciences, pp. 4369–4374, 2018.
ista: Buri P, Pellicciotti F. 2018. Aspect controls the survival of ice cliffs on
debris-covered glaciers. PNAS. 115(17), 4369–4374.
mla: Buri, Pascal, and Francesca Pellicciotti. “Aspect Controls the Survival of
Ice Cliffs on Debris-Covered Glaciers.” PNAS, vol. 115, no. 17, Proceedings
of the National Academy of Sciences, 2018, pp. 4369–74, doi:10.1073/pnas.1713892115.
short: P. Buri, F. Pellicciotti, PNAS 115 (2018) 4369–4374.
date_created: 2023-02-20T08:13:41Z
date_published: 2018-04-09T00:00:00Z
date_updated: 2023-02-28T11:35:18Z
day: '09'
doi: 10.1073/pnas.1713892115
extern: '1'
intvolume: ' 115'
issue: '17'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1073/pnas.1713892115
month: '04'
oa: 1
oa_version: Published Version
page: 4369-4374
publication: PNAS
publication_identifier:
eissn:
- 1091-6490
issn:
- 0027-8424
publication_status: published
publisher: Proceedings of the National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Aspect controls the survival of ice cliffs on debris-covered glaciers
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 115
year: '2018'
...
---
_id: '12606'
abstract:
- lang: eng
text: Ice cliffs within a supraglacial debris cover have been identified as a source
for high ablation relative to the surrounding debris-covered area. Due to their
small relative size and steep orientation, ice cliffs are difficult to detect
using nadir-looking space borne sensors. The method presented here uses surface
slopes calculated from digital elevation model (DEM) data to map ice cliff geometry
and produce an ice cliff probability map. Surface slope thresholds, which can
be sensitive to geographic location and/or data quality, are selected automatically.
The method also attempts to include area at the (often narrowing) ends of ice
cliffs which could otherwise be neglected due to signal saturation in surface
slope data. The method was calibrated in the eastern Alaska Range, Alaska, USA,
against a control ice cliff dataset derived from high-resolution visible and thermal
data. Using the same input parameter set that performed best in Alaska, the method
was tested against ice cliffs manually mapped in the Khumbu Himal, Nepal. Our
results suggest the method can accommodate different glaciological settings and
different DEM data sources without a data intensive (high-resolution, multi-data
source) recalibration.
article_processing_charge: No
article_type: original
author:
- first_name: Sam
full_name: Herreid, Sam
last_name: Herreid
- first_name: Francesca
full_name: Pellicciotti, Francesca
id: b28f055a-81ea-11ed-b70c-a9fe7f7b0e70
last_name: Pellicciotti
citation:
ama: Herreid S, Pellicciotti F. Automated detection of ice cliffs within supraglacial
debris cover. The Cryosphere. 2018;12(5):1811-1829. doi:10.5194/tc-12-1811-2018
apa: Herreid, S., & Pellicciotti, F. (2018). Automated detection of ice cliffs
within supraglacial debris cover. The Cryosphere. Copernicus Publications.
https://doi.org/10.5194/tc-12-1811-2018
chicago: Herreid, Sam, and Francesca Pellicciotti. “Automated Detection of Ice Cliffs
within Supraglacial Debris Cover.” The Cryosphere. Copernicus Publications,
2018. https://doi.org/10.5194/tc-12-1811-2018.
ieee: S. Herreid and F. Pellicciotti, “Automated detection of ice cliffs within
supraglacial debris cover,” The Cryosphere, vol. 12, no. 5. Copernicus
Publications, pp. 1811–1829, 2018.
ista: Herreid S, Pellicciotti F. 2018. Automated detection of ice cliffs within
supraglacial debris cover. The Cryosphere. 12(5), 1811–1829.
mla: Herreid, Sam, and Francesca Pellicciotti. “Automated Detection of Ice Cliffs
within Supraglacial Debris Cover.” The Cryosphere, vol. 12, no. 5, Copernicus
Publications, 2018, pp. 1811–29, doi:10.5194/tc-12-1811-2018.
short: S. Herreid, F. Pellicciotti, The Cryosphere 12 (2018) 1811–1829.
date_created: 2023-02-20T08:13:36Z
date_published: 2018-05-31T00:00:00Z
date_updated: 2023-02-28T11:39:26Z
day: '31'
doi: 10.5194/tc-12-1811-2018
extern: '1'
intvolume: ' 12'
issue: '5'
keyword:
- Earth-Surface Processes
- Water Science and Technology
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.5194/tc-12-1811-2018
month: '05'
oa: 1
oa_version: Published Version
page: 1811-1829
publication: The Cryosphere
publication_identifier:
issn:
- 1994-0424
publication_status: published
publisher: Copernicus Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Automated detection of ice cliffs within supraglacial debris cover
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12
year: '2018'
...
---
_id: '13376'
abstract:
- lang: eng
text: Efficient molecular switching in confined spaces is critical for the successful
development of artificial molecular machines. However, molecular switching events
often entail large structural changes and therefore require conformational freedom,
which is typically limited under confinement conditions. Here, we investigated
the behavior of azobenzene—the key building block of light-controlled molecular
machines—in a confined environment that is flexible and can adapt its shape to
that of the bound guest. To this end, we encapsulated several structurally diverse
azobenzenes within the cavity of a flexible, water-soluble coordination cage,
and investigated their light-responsive behavior. Using UV/Vis absorption spectroscopy
and a combination of NMR methods, we showed that each of the encapsulated azobenzenes
exhibited distinct switching properties. An azobenzene forming a 1:1 host–guest
inclusion complex could be efficiently photoisomerized in a reversible fashion.
In contrast, successful switching in inclusion complexes incorporating two azobenzene
guests was dependent on the availability of free cages in the system, and it involved
reversible trafficking of azobenzene between the cages. In the absence of extra
cages, photoswitching was either suppressed or it involved expulsion of azobenzene
from the cage and consequently its precipitation from the solution. This finding
was utilized to develop an information storage medium in which messages could
be written and erased in a reversible fashion using light.
article_processing_charge: No
article_type: original
author:
- first_name: Dipak
full_name: Samanta, Dipak
last_name: Samanta
- first_name: Julius
full_name: Gemen, Julius
last_name: Gemen
- first_name: Zonglin
full_name: Chu, Zonglin
last_name: Chu
- first_name: Yael
full_name: Diskin-Posner, Yael
last_name: Diskin-Posner
- first_name: Linda J. W.
full_name: Shimon, Linda J. W.
last_name: Shimon
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
citation:
ama: Samanta D, Gemen J, Chu Z, Diskin-Posner Y, Shimon LJW, Klajn R. Reversible
photoswitching of encapsulated azobenzenes in water. Proceedings of the National
Academy of Sciences. 2018;115(38):9379-9384. doi:10.1073/pnas.1712787115
apa: Samanta, D., Gemen, J., Chu, Z., Diskin-Posner, Y., Shimon, L. J. W., &
Klajn, R. (2018). Reversible photoswitching of encapsulated azobenzenes in water.
Proceedings of the National Academy of Sciences. Proceedings of the National
Academy of Sciences. https://doi.org/10.1073/pnas.1712787115
chicago: Samanta, Dipak, Julius Gemen, Zonglin Chu, Yael Diskin-Posner, Linda J.
W. Shimon, and Rafal Klajn. “Reversible Photoswitching of Encapsulated Azobenzenes
in Water.” Proceedings of the National Academy of Sciences. Proceedings
of the National Academy of Sciences, 2018. https://doi.org/10.1073/pnas.1712787115.
ieee: D. Samanta, J. Gemen, Z. Chu, Y. Diskin-Posner, L. J. W. Shimon, and R. Klajn,
“Reversible photoswitching of encapsulated azobenzenes in water,” Proceedings
of the National Academy of Sciences, vol. 115, no. 38. Proceedings of the
National Academy of Sciences, pp. 9379–9384, 2018.
ista: Samanta D, Gemen J, Chu Z, Diskin-Posner Y, Shimon LJW, Klajn R. 2018. Reversible
photoswitching of encapsulated azobenzenes in water. Proceedings of the National
Academy of Sciences. 115(38), 9379–9384.
mla: Samanta, Dipak, et al. “Reversible Photoswitching of Encapsulated Azobenzenes
in Water.” Proceedings of the National Academy of Sciences, vol. 115, no.
38, Proceedings of the National Academy of Sciences, 2018, pp. 9379–84, doi:10.1073/pnas.1712787115.
short: D. Samanta, J. Gemen, Z. Chu, Y. Diskin-Posner, L.J.W. Shimon, R. Klajn,
Proceedings of the National Academy of Sciences 115 (2018) 9379–9384.
date_created: 2023-08-01T09:40:00Z
date_published: 2018-05-01T00:00:00Z
date_updated: 2023-08-07T10:58:11Z
day: '01'
doi: 10.1073/pnas.1712787115
extern: '1'
external_id:
pmid:
- '29717041'
intvolume: ' 115'
issue: '38'
keyword:
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1073/pnas.1712787115
month: '05'
oa: 1
oa_version: Published Version
page: 9379-9384
pmid: 1
publication: Proceedings of the National Academy of Sciences
publication_identifier:
eissn:
- 1091-6490
issn:
- 0027-8424
publication_status: published
publisher: Proceedings of the National Academy of Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Reversible photoswitching of encapsulated azobenzenes in water
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 115
year: '2018'
...
---
_id: '13374'
abstract:
- lang: eng
text: Confining molecules to volumes only slightly larger than the molecules themselves
can profoundly alter their properties. Molecular switches—entities that can be
toggled between two or more forms upon exposure to an external stimulus—often
require conformational freedom to isomerize. Therefore, placing these switches
in confined spaces can render them non-operational. To preserve the switchability
of these species under confinement, we work with a water-soluble coordination
cage that is flexible enough to adapt its shape to the conformation of the encapsulated
guest. We show that owing to its flexibility, the cage is not only capable of
accommodating—and solubilizing in water—several light-responsive spiropyran-based
molecular switches, but, more importantly, it also provides an environment suitable
for the efficient, reversible photoisomerization of the bound guests. Our findings
pave the way towards studying various molecular switching processes in confined
environments.
article_number: '641'
article_processing_charge: No
article_type: original
author:
- first_name: Dipak
full_name: Samanta, Dipak
last_name: Samanta
- first_name: Daria
full_name: Galaktionova, Daria
last_name: Galaktionova
- first_name: Julius
full_name: Gemen, Julius
last_name: Gemen
- first_name: Linda J. W.
full_name: Shimon, Linda J. W.
last_name: Shimon
- first_name: Yael
full_name: Diskin-Posner, Yael
last_name: Diskin-Posner
- first_name: Liat
full_name: Avram, Liat
last_name: Avram
- first_name: Petr
full_name: Král, Petr
last_name: Král
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
citation:
ama: Samanta D, Galaktionova D, Gemen J, et al. Reversible chromism of spiropyran
in the cavity of a flexible coordination cage. Nature Communications. 2018;9.
doi:10.1038/s41467-017-02715-6
apa: Samanta, D., Galaktionova, D., Gemen, J., Shimon, L. J. W., Diskin-Posner,
Y., Avram, L., … Klajn, R. (2018). Reversible chromism of spiropyran in the cavity
of a flexible coordination cage. Nature Communications. Springer Nature.
https://doi.org/10.1038/s41467-017-02715-6
chicago: Samanta, Dipak, Daria Galaktionova, Julius Gemen, Linda J. W. Shimon, Yael
Diskin-Posner, Liat Avram, Petr Král, and Rafal Klajn. “Reversible Chromism of
Spiropyran in the Cavity of a Flexible Coordination Cage.” Nature Communications.
Springer Nature, 2018. https://doi.org/10.1038/s41467-017-02715-6.
ieee: D. Samanta et al., “Reversible chromism of spiropyran in the cavity
of a flexible coordination cage,” Nature Communications, vol. 9. Springer
Nature, 2018.
ista: Samanta D, Galaktionova D, Gemen J, Shimon LJW, Diskin-Posner Y, Avram L,
Král P, Klajn R. 2018. Reversible chromism of spiropyran in the cavity of a flexible
coordination cage. Nature Communications. 9, 641.
mla: Samanta, Dipak, et al. “Reversible Chromism of Spiropyran in the Cavity of
a Flexible Coordination Cage.” Nature Communications, vol. 9, 641, Springer
Nature, 2018, doi:10.1038/s41467-017-02715-6.
short: D. Samanta, D. Galaktionova, J. Gemen, L.J.W. Shimon, Y. Diskin-Posner, L.
Avram, P. Král, R. Klajn, Nature Communications 9 (2018).
date_created: 2023-08-01T09:39:32Z
date_published: 2018-02-13T00:00:00Z
date_updated: 2023-08-07T10:54:05Z
day: '13'
doi: 10.1038/s41467-017-02715-6
extern: '1'
external_id:
pmid:
- '29440687'
intvolume: ' 9'
keyword:
- General Physics and Astronomy
- General Biochemistry
- Genetics and Molecular Biology
- General Chemistry
- Multidisciplinary
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1038/s41467-017-02715-6
month: '02'
oa: 1
oa_version: Published Version
pmid: 1
publication: Nature Communications
publication_identifier:
eissn:
- 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
link:
- relation: erratum
url: https://doi.org/10.1038/s41467-018-03701-2
scopus_import: '1'
status: public
title: Reversible chromism of spiropyran in the cavity of a flexible coordination
cage
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 9
year: '2018'
...
---
_id: '13377'
abstract:
- lang: eng
text: Confining organic molecules to the surfaces of inorganic nanoparticles can
induce intermolecular interactions between them, which can affect the composition
of the mixed self-assembled monolayers obtained by co-adsorption from solution
of two different molecules. Two thiolated ligands (a dialkylviologen and a zwitterionic
sulfobetaine) that can interact with each other electrostatically were coadsorbed
onto gold nanoparticles. The nanoparticles favor a narrow range of ratios of these
two molecules that is largely independent of the molar ratio in solution. Changing
the solution molar ratio of the two ligands by a factor of 5 000 affects the on-nanoparticle
ratio of these ligands by only threefold. This behavior is reminiscent of the
formation of insoluble inorganic salts (such as AgCl), which similarly compensate
positive and negative charges upon crystallizing. Our results pave the way towards
developing well-defined hybrid organic–inorganic nanostructures.
article_processing_charge: No
article_type: original
author:
- first_name: Zonglin
full_name: Chu, Zonglin
last_name: Chu
- first_name: Yanxiao
full_name: Han, Yanxiao
last_name: Han
- first_name: Petr
full_name: Král, Petr
last_name: Král
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
citation:
ama: 'Chu Z, Han Y, Král P, Klajn R. “Precipitation on nanoparticles”: Attractive
intermolecular interactions stabilize specific ligand ratios on the surfaces of
nanoparticles. Angewandte Chemie International Edition. 2018;57(24):7023-7027.
doi:10.1002/anie.201800673'
apa: 'Chu, Z., Han, Y., Král, P., & Klajn, R. (2018). “Precipitation on nanoparticles”:
Attractive intermolecular interactions stabilize specific ligand ratios on the
surfaces of nanoparticles. Angewandte Chemie International Edition. Wiley.
https://doi.org/10.1002/anie.201800673'
chicago: 'Chu, Zonglin, Yanxiao Han, Petr Král, and Rafal Klajn. “‘Precipitation
on Nanoparticles’: Attractive Intermolecular Interactions Stabilize Specific Ligand
Ratios on the Surfaces of Nanoparticles.” Angewandte Chemie International Edition.
Wiley, 2018. https://doi.org/10.1002/anie.201800673.'
ieee: 'Z. Chu, Y. Han, P. Král, and R. Klajn, “‘Precipitation on nanoparticles’:
Attractive intermolecular interactions stabilize specific ligand ratios on the
surfaces of nanoparticles,” Angewandte Chemie International Edition, vol.
57, no. 24. Wiley, pp. 7023–7027, 2018.'
ista: 'Chu Z, Han Y, Král P, Klajn R. 2018. “Precipitation on nanoparticles”: Attractive
intermolecular interactions stabilize specific ligand ratios on the surfaces of
nanoparticles. Angewandte Chemie International Edition. 57(24), 7023–7027.'
mla: 'Chu, Zonglin, et al. “‘Precipitation on Nanoparticles’: Attractive Intermolecular
Interactions Stabilize Specific Ligand Ratios on the Surfaces of Nanoparticles.”
Angewandte Chemie International Edition, vol. 57, no. 24, Wiley, 2018,
pp. 7023–27, doi:10.1002/anie.201800673.'
short: Z. Chu, Y. Han, P. Král, R. Klajn, Angewandte Chemie International Edition
57 (2018) 7023–7027.
date_created: 2023-08-01T09:40:16Z
date_published: 2018-06-11T00:00:00Z
date_updated: 2023-08-07T11:14:28Z
day: '11'
doi: 10.1002/anie.201800673
extern: '1'
external_id:
pmid:
- '29673022'
intvolume: ' 57'
issue: '24'
keyword:
- General Chemistry
- Catalysis
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1002/anie.201800673
month: '06'
oa: 1
oa_version: Published Version
page: 7023-7027
pmid: 1
publication: Angewandte Chemie International Edition
publication_identifier:
eissn:
- 1521-3773
issn:
- 1433-7851
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: '“Precipitation on nanoparticles”: Attractive intermolecular interactions stabilize
specific ligand ratios on the surfaces of nanoparticles'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 57
year: '2018'
...
---
_id: '13379'
article_number: '1700827'
article_processing_charge: No
article_type: letter_note
author:
- first_name: David
full_name: Bléger, David
last_name: Bléger
- first_name: Rafal
full_name: Klajn, Rafal
id: 8e84690e-1e48-11ed-a02b-a1e6fb8bb53b
last_name: Klajn
citation:
ama: Bléger D, Klajn R. Integrating macromolecules with molecular switches. Macromolecular
Rapid Communications. 2018;39(1). doi:10.1002/marc.201700827
apa: Bléger, D., & Klajn, R. (2018). Integrating macromolecules with molecular
switches. Macromolecular Rapid Communications. Wiley. https://doi.org/10.1002/marc.201700827
chicago: Bléger, David, and Rafal Klajn. “Integrating Macromolecules with Molecular
Switches.” Macromolecular Rapid Communications. Wiley, 2018. https://doi.org/10.1002/marc.201700827.
ieee: D. Bléger and R. Klajn, “Integrating macromolecules with molecular switches,”
Macromolecular Rapid Communications, vol. 39, no. 1. Wiley, 2018.
ista: Bléger D, Klajn R. 2018. Integrating macromolecules with molecular switches.
Macromolecular Rapid Communications. 39(1), 1700827.
mla: Bléger, David, and Rafal Klajn. “Integrating Macromolecules with Molecular
Switches.” Macromolecular Rapid Communications, vol. 39, no. 1, 1700827,
Wiley, 2018, doi:10.1002/marc.201700827.
short: D. Bléger, R. Klajn, Macromolecular Rapid Communications 39 (2018).
date_created: 2023-08-01T09:40:48Z
date_published: 2018-01-08T00:00:00Z
date_updated: 2023-08-07T11:16:49Z
day: '08'
doi: 10.1002/marc.201700827
extern: '1'
external_id:
pmid:
- '29314396'
intvolume: ' 39'
issue: '1'
keyword:
- Materials Chemistry
- Polymers and Plastics
- Organic Chemistry
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1002/marc.201700827
month: '01'
oa: 1
oa_version: Published Version
pmid: 1
publication: Macromolecular Rapid Communications
publication_identifier:
eissn:
- 1521-3927
issn:
- 1022-1336
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Integrating macromolecules with molecular switches
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 39
year: '2018'
...
---
_id: '13475'
abstract:
- lang: eng
text: Stars stripped of their hydrogen-rich envelope through interaction with a
binary companion are generally not considered when accounting for ionizing radiation
from stellar populations, despite the expectation that stripped stars emit hard
ionizing radiation, form frequently, and live 10–100 times longer than single
massive stars. We compute the first grid of evolutionary and spectral models specially
made for stars stripped in binaries for a range of progenitor masses (2–20 M⊙)
and metallicities ranging from solar to values representative for pop II stars.
For stripped stars with masses in the range 0.3–7 M⊙, we find consistently high
effective temperatures (20 000–100 000 K, increasing with mass), small radii (0.2–1
R⊙), and high bolometric luminosities, comparable to that of their progenitor
before stripping. The spectra show a continuous sequence that naturally bridges
subdwarf-type stars at the low-mass end and Wolf-Rayet-like spectra at the high-mass
end. For intermediate masses we find hybrid spectral classes showing a mixture
of absorption and emission lines. These appear for stars with mass-loss rates
of 10−8−10−6 M⊙ yr−1, which have semi-transparent atmospheres. At low metallicity,
substantial hydrogen-rich layers are left at the surface and we predict spectra
that resemble O-type stars instead. We obtain spectra undistinguishable from subdwarfs
for stripped stars with masses up to 1.7 M⊙, which questions whether the widely
adopted canonical value of 0.47 M⊙ is uniformly valid. Only a handful of stripped
stars of intermediate mass have currently been identified observationally. Increasing
this sample will provide necessary tests for the physics of interaction, internal
mixing, and stellar winds. We use our model spectra to investigate the feasibility
to detect stripped stars next to an optically bright companion and recommend systematic
searches for their UV excess and possible emission lines, most notably HeII λ4686
in the optical and HeII λ1640 in the UV. Our models are publicly available for
further investigations or inclusion in spectral synthesis simulations.
article_number: A78
article_processing_charge: No
article_type: original
author:
- first_name: Ylva Louise Linsdotter
full_name: Götberg, Ylva Louise Linsdotter
id: d0648d0c-0f64-11ee-a2e0-dd0faa2e4f7d
last_name: Götberg
orcid: 0000-0002-6960-6911
- first_name: S. E.
full_name: de Mink, S. E.
last_name: de Mink
- first_name: J. H.
full_name: Groh, J. H.
last_name: Groh
- first_name: T.
full_name: Kupfer, T.
last_name: Kupfer
- first_name: P. A.
full_name: Crowther, P. A.
last_name: Crowther
- first_name: E.
full_name: Zapartas, E.
last_name: Zapartas
- first_name: M.
full_name: Renzo, M.
last_name: Renzo
citation:
ama: 'Götberg YLL, de Mink SE, Groh JH, et al. Spectral models for binary products:
Unifying subdwarfs and Wolf-Rayet stars as a sequence of stripped-envelope stars.
Astronomy & Astrophysics. 2018;615. doi:10.1051/0004-6361/201732274'
apa: 'Götberg, Y. L. L., de Mink, S. E., Groh, J. H., Kupfer, T., Crowther, P. A.,
Zapartas, E., & Renzo, M. (2018). Spectral models for binary products: Unifying
subdwarfs and Wolf-Rayet stars as a sequence of stripped-envelope stars. Astronomy
& Astrophysics. EDP Sciences. https://doi.org/10.1051/0004-6361/201732274'
chicago: 'Götberg, Ylva Louise Linsdotter, S. E. de Mink, J. H. Groh, T. Kupfer,
P. A. Crowther, E. Zapartas, and M. Renzo. “Spectral Models for Binary Products:
Unifying Subdwarfs and Wolf-Rayet Stars as a Sequence of Stripped-Envelope Stars.”
Astronomy & Astrophysics. EDP Sciences, 2018. https://doi.org/10.1051/0004-6361/201732274.'
ieee: 'Y. L. L. Götberg et al., “Spectral models for binary products: Unifying
subdwarfs and Wolf-Rayet stars as a sequence of stripped-envelope stars,” Astronomy
& Astrophysics, vol. 615. EDP Sciences, 2018.'
ista: 'Götberg YLL, de Mink SE, Groh JH, Kupfer T, Crowther PA, Zapartas E, Renzo
M. 2018. Spectral models for binary products: Unifying subdwarfs and Wolf-Rayet
stars as a sequence of stripped-envelope stars. Astronomy & Astrophysics.
615, A78.'
mla: 'Götberg, Ylva Louise Linsdotter, et al. “Spectral Models for Binary Products:
Unifying Subdwarfs and Wolf-Rayet Stars as a Sequence of Stripped-Envelope Stars.”
Astronomy & Astrophysics, vol. 615, A78, EDP Sciences, 2018, doi:10.1051/0004-6361/201732274.'
short: Y.L.L. Götberg, S.E. de Mink, J.H. Groh, T. Kupfer, P.A. Crowther, E. Zapartas,
M. Renzo, Astronomy & Astrophysics 615 (2018).
date_created: 2023-08-03T10:15:00Z
date_published: 2018-07-17T00:00:00Z
date_updated: 2023-08-09T11:22:17Z
day: '17'
doi: 10.1051/0004-6361/201732274
extern: '1'
external_id:
arxiv:
- '1802.03018'
intvolume: ' 615'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1051/0004-6361/201732274
month: '07'
oa: 1
oa_version: Published Version
publication: Astronomy & Astrophysics
publication_identifier:
eissn:
- 1432-0746
issn:
- 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Spectral models for binary products: Unifying subdwarfs and Wolf-Rayet stars
as a sequence of stripped-envelope stars'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 615
year: '2018'
...
---
_id: '13473'
abstract:
- lang: eng
text: Stripped-envelope stars form in binary systems after losing mass through Roche-lobe
overflow. They bear astrophysical significance as sources of UV and ionizing radiation
in older stellar populations and, if sufficiently massive, as stripped supernova
progenitors. Binary evolutionary models predict that they are common, but only
a handful of subdwarfs with B-type companions are known. The question is whether
a large population of such systems has evaded detection as a result of biases,
or whether the model predictions are wrong. We reanalyze the well-studied post-interaction
binary φ Persei. Recently, new data have improved the orbital solution of the
system, which contains an ~1.2M⊙ stripped-envelope star and a rapidly rotating
~9.6M⊙ Be star. We compare with an extensive grid of evolutionary models using
a Bayesian approach and constrain the initial masses of the progenitor to 7.2
± 0.4M⊙ for the stripped star and 3.8 ± 0.4M⊙ for the Be star. The system must
have evolved through near-conservative mass transfer. These findings are consistent
with earlier studies. The age we obtain, 57 ± 9 Myr, is in excellent agreement
with the age of the α Persei cluster. We note that neither star was initially
massive enough to produce a core-collapse supernova, but mass exchange pushed
the Be star above the mass threshold. We find that the subdwarf is overluminous
for its mass by almost an order of magnitude, compared to the expectations for
a helium core burning star. We can only reconcile this if the subdwarf resides
in a late phase of helium shell burning, which lasts only 2–3% of the total lifetime
as a subdwarf. Assuming continuous star formation implies that up to ~50 less
evolved, dimmer subdwarfs exist for each system similar to φ Persei, but have
evaded detection so far. Our findings can be interpreted as a strong indication
that a substantial population of stripped-envelope stars indeed exists, but has
so far evaded detection because of observational biases and lack of large-scale
systematic searches.
article_number: A30
article_processing_charge: No
article_type: original
author:
- first_name: A.
full_name: Schootemeijer, A.
last_name: Schootemeijer
- first_name: Ylva Louise Linsdotter
full_name: Götberg, Ylva Louise Linsdotter
id: d0648d0c-0f64-11ee-a2e0-dd0faa2e4f7d
last_name: Götberg
orcid: 0000-0002-6960-6911
- first_name: S. E.
full_name: de Mink, S. E.
last_name: de Mink
- first_name: D.
full_name: Gies, D.
last_name: Gies
- first_name: E.
full_name: Zapartas, E.
last_name: Zapartas
citation:
ama: Schootemeijer A, Götberg YLL, de Mink SE, Gies D, Zapartas E. Clues about the
scarcity of stripped-envelope stars from the evolutionary state of the sdO+Be
binary system φ Persei. Astronomy & Astrophysics. 2018;615. doi:10.1051/0004-6361/201731194
apa: Schootemeijer, A., Götberg, Y. L. L., de Mink, S. E., Gies, D., & Zapartas,
E. (2018). Clues about the scarcity of stripped-envelope stars from the evolutionary
state of the sdO+Be binary system φ Persei. Astronomy & Astrophysics.
EDP Sciences. https://doi.org/10.1051/0004-6361/201731194
chicago: Schootemeijer, A., Ylva Louise Linsdotter Götberg, S. E. de Mink, D. Gies,
and E. Zapartas. “Clues about the Scarcity of Stripped-Envelope Stars from the
Evolutionary State of the SdO+Be Binary System φ Persei.” Astronomy & Astrophysics.
EDP Sciences, 2018. https://doi.org/10.1051/0004-6361/201731194.
ieee: A. Schootemeijer, Y. L. L. Götberg, S. E. de Mink, D. Gies, and E. Zapartas,
“Clues about the scarcity of stripped-envelope stars from the evolutionary state
of the sdO+Be binary system φ Persei,” Astronomy & Astrophysics, vol.
615. EDP Sciences, 2018.
ista: Schootemeijer A, Götberg YLL, de Mink SE, Gies D, Zapartas E. 2018. Clues
about the scarcity of stripped-envelope stars from the evolutionary state of the
sdO+Be binary system φ Persei. Astronomy & Astrophysics. 615, A30.
mla: Schootemeijer, A., et al. “Clues about the Scarcity of Stripped-Envelope Stars
from the Evolutionary State of the SdO+Be Binary System φ Persei.” Astronomy
& Astrophysics, vol. 615, A30, EDP Sciences, 2018, doi:10.1051/0004-6361/201731194.
short: A. Schootemeijer, Y.L.L. Götberg, S.E. de Mink, D. Gies, E. Zapartas, Astronomy
& Astrophysics 615 (2018).
date_created: 2023-08-03T10:14:37Z
date_published: 2018-07-06T00:00:00Z
date_updated: 2023-08-09T12:22:52Z
day: '06'
doi: 10.1051/0004-6361/201731194
extern: '1'
external_id:
arxiv:
- '1803.02379'
intvolume: ' 615'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1051/0004-6361/201731194
month: '07'
oa: 1
oa_version: Published Version
publication: Astronomy & Astrophysics
publication_identifier:
eissn:
- 1432-0746
issn:
- 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: Clues about the scarcity of stripped-envelope stars from the evolutionary state
of the sdO+Be binary system φ Persei
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 615
year: '2018'
...
---
_id: '13474'
abstract:
- lang: eng
text: Recent surveys of the Magellanic Clouds have revealed a subtype of Wolf–Rayet
(WR) star with peculiar properties. WN3/O3 spectra exhibit both WR-like emission
and O3 V-like absorption – but at lower luminosity than O3 V or WN stars. We examine
the projected spatial distribution of WN3/O3 stars in the Large Magellanic Cloud
as compared to O-type stars. Surprisingly, WN3/O3 stars are among the most isolated
of all classes of massive stars; they have a distribution similar to red supergiants
dominated by initial masses of 10–15 M⊙, and are far more dispersed than classical
WR stars or luminous blue variables. Their lack of association with clusters of
O-type stars suggests strongly that WN3/O3 stars are not the descendants of single
massive stars (30 M⊙ or above). Instead, they are likely products of interacting
binaries at lower initial mass (10–18 M⊙). Comparison with binary models suggests
a probable origin with primaries in this mass range that were stripped of their
H envelopes through non-conservative mass transfer by a low-mass secondary. We
show that model spectra and positions on the Hertzsprung–Russell diagram for binary-stripped
stars are consistent with WN3/O3 stars. Monitoring radial velocities with high-resolution
spectra can test for low-mass companions or runaway velocities. With lower initial
mass and environments that avoid very massive stars, the WN3/O3 stars fit expectations
for progenitors of Type Ib and possibly Type Ibn supernovae.
article_processing_charge: No
article_type: original
author:
- first_name: Nathan
full_name: Smith, Nathan
last_name: Smith
- first_name: Ylva Louise Linsdotter
full_name: Götberg, Ylva Louise Linsdotter
id: d0648d0c-0f64-11ee-a2e0-dd0faa2e4f7d
last_name: Götberg
orcid: 0000-0002-6960-6911
- first_name: Selma E
full_name: de Mink, Selma E
last_name: de Mink
citation:
ama: Smith N, Götberg YLL, de Mink SE. Extreme isolation of WN3/O3 stars and implications
for their evolutionary origin as the elusive stripped binaries. Monthly Notices
of the Royal Astronomical Society. 2018;475(1):772-782. doi:10.1093/mnras/stx3181
apa: Smith, N., Götberg, Y. L. L., & de Mink, S. E. (2018). Extreme isolation
of WN3/O3 stars and implications for their evolutionary origin as the elusive
stripped binaries. Monthly Notices of the Royal Astronomical Society. Oxford
University Press. https://doi.org/10.1093/mnras/stx3181
chicago: Smith, Nathan, Ylva Louise Linsdotter Götberg, and Selma E de Mink. “Extreme
Isolation of WN3/O3 Stars and Implications for Their Evolutionary Origin as the
Elusive Stripped Binaries.” Monthly Notices of the Royal Astronomical Society.
Oxford University Press, 2018. https://doi.org/10.1093/mnras/stx3181.
ieee: N. Smith, Y. L. L. Götberg, and S. E. de Mink, “Extreme isolation of WN3/O3
stars and implications for their evolutionary origin as the elusive stripped binaries,”
Monthly Notices of the Royal Astronomical Society, vol. 475, no. 1. Oxford
University Press, pp. 772–782, 2018.
ista: Smith N, Götberg YLL, de Mink SE. 2018. Extreme isolation of WN3/O3 stars
and implications for their evolutionary origin as the elusive stripped binaries.
Monthly Notices of the Royal Astronomical Society. 475(1), 772–782.
mla: Smith, Nathan, et al. “Extreme Isolation of WN3/O3 Stars and Implications for
Their Evolutionary Origin as the Elusive Stripped Binaries.” Monthly Notices
of the Royal Astronomical Society, vol. 475, no. 1, Oxford University Press,
2018, pp. 772–82, doi:10.1093/mnras/stx3181.
short: N. Smith, Y.L.L. Götberg, S.E. de Mink, Monthly Notices of the Royal Astronomical
Society 475 (2018) 772–782.
date_created: 2023-08-03T10:14:47Z
date_published: 2018-03-01T00:00:00Z
date_updated: 2023-08-09T12:17:34Z
day: '01'
doi: 10.1093/mnras/stx3181
extern: '1'
external_id:
arxiv:
- '1704.03516'
intvolume: ' 475'
issue: '1'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1093/mnras/stx3181
month: '03'
oa: 1
oa_version: Published Version
page: 772-782
publication: Monthly Notices of the Royal Astronomical Society
publication_identifier:
eissn:
- 1365-2966
issn:
- 0035-8711
publication_status: published
publisher: Oxford University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Extreme isolation of WN3/O3 stars and implications for their evolutionary origin
as the elusive stripped binaries
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 475
year: '2018'
...
---
_id: '186'
abstract:
- lang: eng
text: 'A drawing of a graph on a surface is independently even if every pair of
nonadjacent edges in the drawing crosses an even number of times. The ℤ2-genus
of a graph G is the minimum g such that G has an independently even drawing on
the orientable surface of genus g. An unpublished result by Robertson and Seymour
implies that for every t, every graph of sufficiently large genus contains as
a minor a projective t × t grid or one of the following so-called t-Kuratowski
graphs: K3, t, or t copies of K5 or K3,3 sharing at most 2 common vertices. We
show that the ℤ2-genus of graphs in these families is unbounded in t; in fact,
equal to their genus. Together, this implies that the genus of a graph is bounded
from above by a function of its ℤ2-genus, solving a problem posed by Schaefer
and Štefankovič, and giving an approximate version of the Hanani-Tutte theorem
on orientable surfaces.'
alternative_title:
- LIPIcs
article_processing_charge: No
author:
- first_name: Radoslav
full_name: Fulek, Radoslav
id: 39F3FFE4-F248-11E8-B48F-1D18A9856A87
last_name: Fulek
orcid: 0000-0001-8485-1774
- first_name: Jan
full_name: Kynčl, Jan
last_name: Kynčl
citation:
ama: 'Fulek R, Kynčl J. The ℤ2-Genus of Kuratowski minors. In: Vol 99. Schloss Dagstuhl
- Leibniz-Zentrum für Informatik; 2018:40.1-40.14. doi:10.4230/LIPIcs.SoCG.2018.40'
apa: 'Fulek, R., & Kynčl, J. (2018). The ℤ2-Genus of Kuratowski minors (Vol.
99, p. 40.1-40.14). Presented at the SoCG: Symposium on Computational Geometry,
Budapest, Hungary: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.SoCG.2018.40'
chicago: Fulek, Radoslav, and Jan Kynčl. “The ℤ2-Genus of Kuratowski Minors,” 99:40.1-40.14.
Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2018. https://doi.org/10.4230/LIPIcs.SoCG.2018.40.
ieee: 'R. Fulek and J. Kynčl, “The ℤ2-Genus of Kuratowski minors,” presented at
the SoCG: Symposium on Computational Geometry, Budapest, Hungary, 2018, vol. 99,
p. 40.1-40.14.'
ista: 'Fulek R, Kynčl J. 2018. The ℤ2-Genus of Kuratowski minors. SoCG: Symposium
on Computational Geometry, LIPIcs, vol. 99, 40.1-40.14.'
mla: Fulek, Radoslav, and Jan Kynčl. The ℤ2-Genus of Kuratowski Minors. Vol.
99, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2018, p. 40.1-40.14, doi:10.4230/LIPIcs.SoCG.2018.40.
short: R. Fulek, J. Kynčl, in:, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
2018, p. 40.1-40.14.
conference:
end_date: 2018-06-14
location: Budapest, Hungary
name: 'SoCG: Symposium on Computational Geometry'
start_date: 2018-06-11
date_created: 2018-12-11T11:45:05Z
date_published: 2018-06-11T00:00:00Z
date_updated: 2023-08-14T12:43:51Z
day: '11'
department:
- _id: UlWa
doi: 10.4230/LIPIcs.SoCG.2018.40
external_id:
arxiv:
- '1803.05085'
intvolume: ' 99'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1803.05085
month: '06'
oa: 1
oa_version: Submitted Version
page: 40.1 - 40.14
project:
- _id: 261FA626-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: M02281
name: Eliminating intersections in drawings of graphs
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '7734'
quality_controlled: '1'
related_material:
record:
- id: '11593'
relation: later_version
status: public
scopus_import: '1'
status: public
title: The ℤ2-Genus of Kuratowski minors
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 99
year: '2018'
...
---
_id: '14003'
abstract:
- lang: eng
text: "Molecular chirality plays an essential role in most biochemical processes.
The observation and quantification of chirality-sensitive signals, however, remains
extremely challenging, especially on ultrafast timescales and in dilute media.
Here, we describe the experimental realization of an all-optical and ultrafast
scheme for detecting chiral dynamics in molecules. This technique is based on
high-harmonic generation by a combination of two-color counterrotating femtosecond
laser pulses with polarization states tunable from linear to circular. We demonstrate
two different implementations of chiral-sensitive high-harmonic spectroscopy on
an ensemble of randomly oriented methyloxirane molecules in the gas phase. Using
two elliptically polarized fields, we observe that the ellipticities maximizing
the harmonic signal reach up to \r\n4.4\r\n±\r\n0.2\r\n%\r\n (at 17.6 eV). Using
two circularly polarized fields, we observe circular dichroisms ranging up to
\r\n13\r\n±\r\n6\r\n%\r\n (28.3–33.1 eV). Our theoretical analysis confirms that
the observed chiral response originates from subfemtosecond electron dynamics
driven by the magnetic component of the driving laser field. This assignment is
supported by the experimental observation of a strong intensity dependence of
the chiral effects and its agreement with theory. We moreover report and explain
a pronounced variation of the signal strength and dichroism with the driving-field
ellipticities and harmonic orders. Finally, we demonstrate the sensitivity of
the experimental observables to the shape of the electron hole. This technique
for chiral discrimination will yield femtosecond temporal resolution when integrated
in a pump-probe scheme and subfemtosecond resolution on chiral charge migration
in a self-probing scheme."
article_number: '031060'
article_processing_charge: No
article_type: original
author:
- first_name: Denitsa Rangelova
full_name: Baykusheva, Denitsa Rangelova
id: 71b4d059-2a03-11ee-914d-dfa3beed6530
last_name: Baykusheva
- first_name: Hans Jakob
full_name: Wörner, Hans Jakob
last_name: Wörner
citation:
ama: Baykusheva DR, Wörner HJ. Chiral discrimination through bielliptical high-harmonic
spectroscopy. Physical Review X. 2018;8(3). doi:10.1103/physrevx.8.031060
apa: Baykusheva, D. R., & Wörner, H. J. (2018). Chiral discrimination through
bielliptical high-harmonic spectroscopy. Physical Review X. American Physical
Society. https://doi.org/10.1103/physrevx.8.031060
chicago: Baykusheva, Denitsa Rangelova, and Hans Jakob Wörner. “Chiral Discrimination
through Bielliptical High-Harmonic Spectroscopy.” Physical Review X. American
Physical Society, 2018. https://doi.org/10.1103/physrevx.8.031060.
ieee: D. R. Baykusheva and H. J. Wörner, “Chiral discrimination through bielliptical
high-harmonic spectroscopy,” Physical Review X, vol. 8, no. 3. American
Physical Society, 2018.
ista: Baykusheva DR, Wörner HJ. 2018. Chiral discrimination through bielliptical
high-harmonic spectroscopy. Physical Review X. 8(3), 031060.
mla: Baykusheva, Denitsa Rangelova, and Hans Jakob Wörner. “Chiral Discrimination
through Bielliptical High-Harmonic Spectroscopy.” Physical Review X, vol.
8, no. 3, 031060, American Physical Society, 2018, doi:10.1103/physrevx.8.031060.
short: D.R. Baykusheva, H.J. Wörner, Physical Review X 8 (2018).
date_created: 2023-08-10T06:34:48Z
date_published: 2018-07-01T00:00:00Z
date_updated: 2023-08-22T07:42:07Z
day: '01'
doi: 10.1103/physrevx.8.031060
extern: '1'
intvolume: ' 8'
issue: '3'
keyword:
- General Physics and Astronomy
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1103/PhysRevX.8.031060
month: '07'
oa: 1
oa_version: Published Version
publication: Physical Review X
publication_identifier:
eissn:
- 2160-3308
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Chiral discrimination through bielliptical high-harmonic spectroscopy
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 8
year: '2018'
...
---
_id: '433'
abstract:
- lang: eng
text: 'A thrackle is a graph drawn in the plane so that every pair of its edges
meet exactly once: either at a common end vertex or in a proper crossing. We prove
that any thrackle of n vertices has at most 1.3984n edges. Quasi-thrackles are
defined similarly, except that every pair of edges that do not share a vertex
are allowed to cross an odd number of times. It is also shown that the maximum
number of edges of a quasi-thrackle on n vertices is 3/2(n-1), and that this bound
is best possible for infinitely many values of n.'
alternative_title:
- LNCS
author:
- first_name: Radoslav
full_name: Fulek, Radoslav
id: 39F3FFE4-F248-11E8-B48F-1D18A9856A87
last_name: Fulek
orcid: 0000-0001-8485-1774
- first_name: János
full_name: Pach, János
last_name: Pach
citation:
ama: 'Fulek R, Pach J. Thrackles: An improved upper bound. In: Vol 10692. Springer;
2018:160-166. doi:10.1007/978-3-319-73915-1_14'
apa: 'Fulek, R., & Pach, J. (2018). Thrackles: An improved upper bound (Vol.
10692, pp. 160–166). Presented at the GD 2017: Graph Drawing and Network Visualization,
Boston, MA, United States: Springer. https://doi.org/10.1007/978-3-319-73915-1_14'
chicago: 'Fulek, Radoslav, and János Pach. “Thrackles: An Improved Upper Bound,”
10692:160–66. Springer, 2018. https://doi.org/10.1007/978-3-319-73915-1_14.'
ieee: 'R. Fulek and J. Pach, “Thrackles: An improved upper bound,” presented at
the GD 2017: Graph Drawing and Network Visualization, Boston, MA, United States,
2018, vol. 10692, pp. 160–166.'
ista: 'Fulek R, Pach J. 2018. Thrackles: An improved upper bound. GD 2017: Graph
Drawing and Network Visualization, LNCS, vol. 10692, 160–166.'
mla: 'Fulek, Radoslav, and János Pach. Thrackles: An Improved Upper Bound.
Vol. 10692, Springer, 2018, pp. 160–66, doi:10.1007/978-3-319-73915-1_14.'
short: R. Fulek, J. Pach, in:, Springer, 2018, pp. 160–166.
conference:
end_date: 2017-09-27
location: Boston, MA, United States
name: 'GD 2017: Graph Drawing and Network Visualization'
start_date: 201-09-25
date_created: 2018-12-11T11:46:27Z
date_published: 2018-01-21T00:00:00Z
date_updated: 2023-08-24T14:39:32Z
day: '21'
department:
- _id: UlWa
doi: 10.1007/978-3-319-73915-1_14
external_id:
arxiv:
- '1708.08037'
intvolume: ' 10692'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1708.08037
month: '01'
oa: 1
oa_version: Submitted Version
page: 160 - 166
publication_status: published
publisher: Springer
publist_id: '7390'
quality_controlled: '1'
related_material:
record:
- id: '5857'
relation: later_version
status: public
scopus_import: 1
status: public
title: 'Thrackles: An improved upper bound'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 10692
year: '2018'
...
---
_id: '9837'
abstract:
- lang: eng
text: Both classical and recent studies suggest that chromosomal inversion polymorphisms
are important in adaptation and speciation. However, biases in discovery and reporting
of inversions make it difficult to assess their prevalence and biological importance.
Here, we use an approach based on linkage disequilibrium among markers genotyped
for samples collected across a transect between contrasting habitats to detect
chromosomal rearrangements de novo. We report 17 polymorphic rearrangements in
a single locality for the coastal marine snail, Littorina saxatilis. Patterns
of diversity in the field and of recombination in controlled crosses provide strong
evidence that at least the majority of these rearrangements are inversions. Most
show clinal changes in frequency between habitats, suggestive of divergent selection,
but only one appears to be fixed for different arrangements in the two habitats.
Consistent with widespread evidence for balancing selection on inversion polymorphisms,
we argue that a combination of heterosis and divergent selection can explain the
observed patterns and should be considered in other systems spanning environmental
gradients.
article_processing_charge: No
author:
- first_name: Rui
full_name: Faria, Rui
last_name: Faria
- first_name: Pragya
full_name: Chaube, Pragya
last_name: Chaube
- first_name: Hernán E.
full_name: Morales, Hernán E.
last_name: Morales
- first_name: Tomas
full_name: Larsson, Tomas
last_name: Larsson
- first_name: Alan R.
full_name: Lemmon, Alan R.
last_name: Lemmon
- first_name: Emily M.
full_name: Lemmon, Emily M.
last_name: Lemmon
- first_name: Marina
full_name: Rafajlović, Marina
last_name: Rafajlović
- first_name: Marina
full_name: Panova, Marina
last_name: Panova
- first_name: Mark
full_name: Ravinet, Mark
last_name: Ravinet
- first_name: Kerstin
full_name: Johannesson, Kerstin
last_name: Johannesson
- first_name: Anja M
full_name: Westram, Anja M
id: 3C147470-F248-11E8-B48F-1D18A9856A87
last_name: Westram
orcid: 0000-0003-1050-4969
- first_name: Roger K.
full_name: Butlin, Roger K.
last_name: Butlin
citation:
ama: 'Faria R, Chaube P, Morales HE, et al. Data from: Multiple chromosomal rearrangements
in a hybrid zone between Littorina saxatilis ecotypes. 2018. doi:10.5061/dryad.72cg113'
apa: 'Faria, R., Chaube, P., Morales, H. E., Larsson, T., Lemmon, A. R., Lemmon,
E. M., … Butlin, R. K. (2018). Data from: Multiple chromosomal rearrangements
in a hybrid zone between Littorina saxatilis ecotypes. Dryad. https://doi.org/10.5061/dryad.72cg113'
chicago: 'Faria, Rui, Pragya Chaube, Hernán E. Morales, Tomas Larsson, Alan R. Lemmon,
Emily M. Lemmon, Marina Rafajlović, et al. “Data from: Multiple Chromosomal Rearrangements
in a Hybrid Zone between Littorina Saxatilis Ecotypes.” Dryad, 2018. https://doi.org/10.5061/dryad.72cg113.'
ieee: 'R. Faria et al., “Data from: Multiple chromosomal rearrangements in
a hybrid zone between Littorina saxatilis ecotypes.” Dryad, 2018.'
ista: 'Faria R, Chaube P, Morales HE, Larsson T, Lemmon AR, Lemmon EM, Rafajlović
M, Panova M, Ravinet M, Johannesson K, Westram AM, Butlin RK. 2018. Data from:
Multiple chromosomal rearrangements in a hybrid zone between Littorina saxatilis
ecotypes, Dryad, 10.5061/dryad.72cg113.'
mla: 'Faria, Rui, et al. Data from: Multiple Chromosomal Rearrangements in a
Hybrid Zone between Littorina Saxatilis Ecotypes. Dryad, 2018, doi:10.5061/dryad.72cg113.'
short: R. Faria, P. Chaube, H.E. Morales, T. Larsson, A.R. Lemmon, E.M. Lemmon,
M. Rafajlović, M. Panova, M. Ravinet, K. Johannesson, A.M. Westram, R.K. Butlin,
(2018).
date_created: 2021-08-09T12:46:39Z
date_published: 2018-10-09T00:00:00Z
date_updated: 2023-08-24T14:50:26Z
day: '09'
department:
- _id: NiBa
doi: 10.5061/dryad.72cg113
main_file_link:
- open_access: '1'
url: https://doi.org/10.5061/dryad.72cg113
month: '10'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
record:
- id: '6095'
relation: used_in_publication
status: public
status: public
title: 'Data from: Multiple chromosomal rearrangements in a hybrid zone between Littorina
saxatilis ecotypes'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2018'
...
---
_id: '5457'
abstract:
- lang: eng
text: "We consider the problem of expected cost analysis over nondeterministic probabilistic
programs, which aims at automated methods for analyzing the resource-usage of
such programs. Previous approaches for this problem could only handle nonnegative
bounded costs. However, in many scenarios, such as queuing networks or analysis
of cryptocurrency protocols, both positive and negative costs are necessary and
the costs are unbounded as well.\r\n\r\nIn this work, we present a sound and efficient
approach to obtain polynomial bounds on the expected accumulated cost of nondeterministic
probabilistic programs. Our approach can handle (a) general positive and negative
costs with bounded updates in variables; and (b) nonnegative costs with general
updates to variables. We show that several natural examples which could not be
handled by previous approaches are captured in our framework.\r\n\r\nMoreover,
our approach leads to an efficient polynomial-time algorithm, while no previous
approach for cost analysis of probabilistic programs could guarantee polynomial
runtime. Finally, we show the effectiveness of our approach by presenting experimental
results on a variety of programs, motivated by real-world applications, for which
we efficiently synthesize tight resource-usage bounds."
alternative_title:
- IST Austria Technical Report
author:
- first_name: '1'
full_name: Anonymous, 1
last_name: Anonymous
- first_name: '2'
full_name: Anonymous, 2
last_name: Anonymous
- first_name: '3'
full_name: Anonymous, 3
last_name: Anonymous
- first_name: '4'
full_name: Anonymous, 4
last_name: Anonymous
- first_name: '5'
full_name: Anonymous, 5
last_name: Anonymous
- first_name: '6'
full_name: Anonymous, 6
last_name: Anonymous
citation:
ama: Anonymous 1, Anonymous 2, Anonymous 3, Anonymous 4, Anonymous 5, Anonymous
6. Cost Analysis of Nondeterministic Probabilistic Programs. IST Austria;
2018.
apa: Anonymous, 1, Anonymous, 2, Anonymous, 3, Anonymous, 4, Anonymous, 5, &
Anonymous, 6. (2018). Cost analysis of nondeterministic probabilistic programs.
IST Austria.
chicago: Anonymous, 1, 2 Anonymous, 3 Anonymous, 4 Anonymous, 5 Anonymous, and 6
Anonymous. Cost Analysis of Nondeterministic Probabilistic Programs. IST
Austria, 2018.
ieee: 1 Anonymous, 2 Anonymous, 3 Anonymous, 4 Anonymous, 5 Anonymous, and 6 Anonymous,
Cost analysis of nondeterministic probabilistic programs. IST Austria,
2018.
ista: Anonymous 1, Anonymous 2, Anonymous 3, Anonymous 4, Anonymous 5, Anonymous
6. 2018. Cost analysis of nondeterministic probabilistic programs, IST Austria,
27p.
mla: Anonymous, 1, et al. Cost Analysis of Nondeterministic Probabilistic Programs.
IST Austria, 2018.
short: 1 Anonymous, 2 Anonymous, 3 Anonymous, 4 Anonymous, 5 Anonymous, 6 Anonymous,
Cost Analysis of Nondeterministic Probabilistic Programs, IST Austria, 2018.
date_created: 2018-12-12T11:39:26Z
date_published: 2018-11-11T00:00:00Z
date_updated: 2023-08-25T08:07:48Z
day: '11'
ddc:
- '000'
file:
- access_level: open_access
checksum: ba3adafd36fe200385ccda583063b9eb
content_type: application/pdf
creator: system
date_created: 2018-12-12T11:53:32Z
date_updated: 2020-07-14T12:47:00Z
file_id: '5493'
file_name: IST-2018-1066-v1+1_techreport.pdf
file_size: 4202966
relation: main_file
- access_level: closed
checksum: 6cf3a19164bb8e5048a9c8c84dfd9fa3
content_type: text/plain
creator: dernst
date_created: 2019-05-10T13:22:12Z
date_updated: 2020-07-14T12:47:00Z
file_id: '6402'
file_name: authors-names.txt
file_size: 322
relation: main_file
file_date_updated: 2020-07-14T12:47:00Z
has_accepted_license: '1'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: '27'
publication_identifier:
issn:
- 2664-1690
publication_status: published
publisher: IST Austria
pubrep_id: '1066'
related_material:
record:
- id: '6175'
relation: later_version
status: public
scopus_import: 1
status: public
title: Cost analysis of nondeterministic probabilistic programs
type: technical_report
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '10864'
abstract:
- lang: eng
text: We prove that every congruence distributive variety has directed Jónsson terms,
and every congruence modular variety has directed Gumm terms. The directed terms
we construct witness every case of absorption witnessed by the original Jónsson
or Gumm terms. This result is equivalent to a pair of claims about absorption
for admissible preorders in congruence distributive and congruence modular varieties,
respectively. For finite algebras, these absorption theorems have already seen
significant applications, but until now, it was not clear if the theorems hold
for general algebras as well. Our method also yields a novel proof of a result
by P. Lipparini about the existence of a chain of terms (which we call Pixley
terms) in varieties that are at the same time congruence distributive and k-permutable
for some k.
acknowledgement: The second author was supported by National Science Center grant
DEC-2011-/01/B/ST6/01006.
article_processing_charge: No
author:
- first_name: Alexandr
full_name: Kazda, Alexandr
id: 3B32BAA8-F248-11E8-B48F-1D18A9856A87
last_name: Kazda
- first_name: Marcin
full_name: Kozik, Marcin
last_name: Kozik
- first_name: Ralph
full_name: McKenzie, Ralph
last_name: McKenzie
- first_name: Matthew
full_name: Moore, Matthew
last_name: Moore
citation:
ama: 'Kazda A, Kozik M, McKenzie R, Moore M. Absorption and directed Jónsson terms.
In: Czelakowski J, ed. Don Pigozzi on Abstract Algebraic Logic, Universal Algebra,
and Computer Science. Vol 16. OCTR. Cham: Springer Nature; 2018:203-220. doi:10.1007/978-3-319-74772-9_7'
apa: 'Kazda, A., Kozik, M., McKenzie, R., & Moore, M. (2018). Absorption and
directed Jónsson terms. In J. Czelakowski (Ed.), Don Pigozzi on Abstract Algebraic
Logic, Universal Algebra, and Computer Science (Vol. 16, pp. 203–220). Cham:
Springer Nature. https://doi.org/10.1007/978-3-319-74772-9_7'
chicago: 'Kazda, Alexandr, Marcin Kozik, Ralph McKenzie, and Matthew Moore. “Absorption
and Directed Jónsson Terms.” In Don Pigozzi on Abstract Algebraic Logic, Universal
Algebra, and Computer Science, edited by J Czelakowski, 16:203–20. OCTR. Cham:
Springer Nature, 2018. https://doi.org/10.1007/978-3-319-74772-9_7.'
ieee: 'A. Kazda, M. Kozik, R. McKenzie, and M. Moore, “Absorption and directed Jónsson
terms,” in Don Pigozzi on Abstract Algebraic Logic, Universal Algebra, and
Computer Science, vol. 16, J. Czelakowski, Ed. Cham: Springer Nature, 2018,
pp. 203–220.'
ista: 'Kazda A, Kozik M, McKenzie R, Moore M. 2018.Absorption and directed Jónsson
terms. In: Don Pigozzi on Abstract Algebraic Logic, Universal Algebra, and Computer
Science. vol. 16, 203–220.'
mla: Kazda, Alexandr, et al. “Absorption and Directed Jónsson Terms.” Don Pigozzi
on Abstract Algebraic Logic, Universal Algebra, and Computer Science, edited
by J Czelakowski, vol. 16, Springer Nature, 2018, pp. 203–20, doi:10.1007/978-3-319-74772-9_7.
short: A. Kazda, M. Kozik, R. McKenzie, M. Moore, in:, J. Czelakowski (Ed.), Don
Pigozzi on Abstract Algebraic Logic, Universal Algebra, and Computer Science,
Springer Nature, Cham, 2018, pp. 203–220.
date_created: 2022-03-18T10:30:32Z
date_published: 2018-03-21T00:00:00Z
date_updated: 2023-09-05T15:37:18Z
day: '21'
department:
- _id: VlKo
doi: 10.1007/978-3-319-74772-9_7
editor:
- first_name: J
full_name: Czelakowski, J
last_name: Czelakowski
external_id:
arxiv:
- '1502.01072'
intvolume: ' 16'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1502.01072
month: '03'
oa: 1
oa_version: Preprint
page: 203-220
place: Cham
publication: Don Pigozzi on Abstract Algebraic Logic, Universal Algebra, and Computer
Science
publication_identifier:
eisbn:
- '9783319747729'
eissn:
- 2211-2766
isbn:
- '9783319747712'
issn:
- 2211-2758
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
series_title: OCTR
status: public
title: Absorption and directed Jónsson terms
type: book_chapter
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 16
year: '2018'
...
---
_id: '184'
abstract:
- lang: eng
text: We prove that for every d ≥ 2, deciding if a pure, d-dimensional, simplicial
complex is shellable is NP-hard, hence NP-complete. This resolves a question raised,
e.g., by Danaraj and Klee in 1978. Our reduction also yields that for every d
≥ 2 and k ≥ 0, deciding if a pure, d-dimensional, simplicial complex is k-decomposable
is NP-hard. For d ≥ 3, both problems remain NP-hard when restricted to contractible
pure d-dimensional complexes.
acknowledgement: 'Partially supported by the project EMBEDS II (CZ: 7AMB17FR029, FR:
38087RM) of Czech-French collaboration.'
alternative_title:
- Leibniz International Proceedings in Information, LIPIcs
author:
- first_name: Xavier
full_name: Goaoc, Xavier
last_name: Goaoc
- first_name: Pavel
full_name: Paták, Pavel
last_name: Paták
- first_name: Zuzana
full_name: Patakova, Zuzana
id: 48B57058-F248-11E8-B48F-1D18A9856A87
last_name: Patakova
orcid: 0000-0002-3975-1683
- first_name: Martin
full_name: Tancer, Martin
id: 38AC689C-F248-11E8-B48F-1D18A9856A87
last_name: Tancer
orcid: 0000-0002-1191-6714
- first_name: Uli
full_name: Wagner, Uli
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
citation:
ama: 'Goaoc X, Paták P, Patakova Z, Tancer M, Wagner U. Shellability is NP-complete.
In: Vol 99. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2018:41:1-41:16.
doi:10.4230/LIPIcs.SoCG.2018.41'
apa: 'Goaoc, X., Paták, P., Patakova, Z., Tancer, M., & Wagner, U. (2018). Shellability
is NP-complete (Vol. 99, p. 41:1-41:16). Presented at the SoCG: Symposium on Computational
Geometry, Budapest, Hungary: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.
https://doi.org/10.4230/LIPIcs.SoCG.2018.41'
chicago: Goaoc, Xavier, Pavel Paták, Zuzana Patakova, Martin Tancer, and Uli Wagner.
“Shellability Is NP-Complete,” 99:41:1-41:16. Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2018. https://doi.org/10.4230/LIPIcs.SoCG.2018.41.
ieee: 'X. Goaoc, P. Paták, Z. Patakova, M. Tancer, and U. Wagner, “Shellability
is NP-complete,” presented at the SoCG: Symposium on Computational Geometry, Budapest,
Hungary, 2018, vol. 99, p. 41:1-41:16.'
ista: 'Goaoc X, Paták P, Patakova Z, Tancer M, Wagner U. 2018. Shellability is NP-complete.
SoCG: Symposium on Computational Geometry, Leibniz International Proceedings in
Information, LIPIcs, vol. 99, 41:1-41:16.'
mla: Goaoc, Xavier, et al. Shellability Is NP-Complete. Vol. 99, Schloss
Dagstuhl - Leibniz-Zentrum für Informatik, 2018, p. 41:1-41:16, doi:10.4230/LIPIcs.SoCG.2018.41.
short: X. Goaoc, P. Paták, Z. Patakova, M. Tancer, U. Wagner, in:, Schloss Dagstuhl
- Leibniz-Zentrum für Informatik, 2018, p. 41:1-41:16.
conference:
end_date: 2018-06-14
location: Budapest, Hungary
name: 'SoCG: Symposium on Computational Geometry'
start_date: 2018-06-11
date_created: 2018-12-11T11:45:04Z
date_published: 2018-06-11T00:00:00Z
date_updated: 2023-09-06T11:10:57Z
day: '11'
ddc:
- '516'
- '000'
department:
- _id: UlWa
doi: 10.4230/LIPIcs.SoCG.2018.41
file:
- access_level: open_access
checksum: d12bdd60f04a57307867704b5f930afd
content_type: application/pdf
creator: dernst
date_created: 2018-12-17T16:35:02Z
date_updated: 2020-07-14T12:45:18Z
file_id: '5725'
file_name: 2018_LIPIcs_Goaoc.pdf
file_size: 718414
relation: main_file
file_date_updated: 2020-07-14T12:45:18Z
has_accepted_license: '1'
intvolume: ' 99'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 41:1 - 41:16
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '7736'
quality_controlled: '1'
related_material:
record:
- id: '7108'
relation: later_version
status: public
scopus_import: 1
status: public
title: Shellability is NP-complete
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 99
year: '2018'
...
---
_id: '285'
abstract:
- lang: eng
text: In graph theory, as well as in 3-manifold topology, there exist several width-type
parameters to describe how "simple" or "thin" a given graph
or 3-manifold is. These parameters, such as pathwidth or treewidth for graphs,
or the concept of thin position for 3-manifolds, play an important role when studying
algorithmic problems; in particular, there is a variety of problems in computational
3-manifold topology - some of them known to be computationally hard in general
- that become solvable in polynomial time as soon as the dual graph of the input
triangulation has bounded treewidth. In view of these algorithmic results, it
is natural to ask whether every 3-manifold admits a triangulation of bounded treewidth.
We show that this is not the case, i.e., that there exists an infinite family
of closed 3-manifolds not admitting triangulations of bounded pathwidth or treewidth
(the latter implies the former, but we present two separate proofs). We derive
these results from work of Agol and of Scharlemann and Thompson, by exhibiting
explicit connections between the topology of a 3-manifold M on the one hand and
width-type parameters of the dual graphs of triangulations of M on the other hand,
answering a question that had been raised repeatedly by researchers in computational
3-manifold topology. In particular, we show that if a closed, orientable, irreducible,
non-Haken 3-manifold M has a triangulation of treewidth (resp. pathwidth) k then
the Heegaard genus of M is at most 48(k+1) (resp. 4(3k+1)).
acknowledgement: Research of the second author was supported by the Einstein Foundation
(project “Einstein Visiting Fellow Santos”) and by the Simons Foundation (“Simons
Visiting Professors” program).
alternative_title:
- LIPIcs
article_number: '46'
article_processing_charge: No
author:
- first_name: Kristóf
full_name: Huszár, Kristóf
id: 33C26278-F248-11E8-B48F-1D18A9856A87
last_name: Huszár
orcid: 0000-0002-5445-5057
- first_name: Jonathan
full_name: Spreer, Jonathan
last_name: Spreer
- first_name: Uli
full_name: Wagner, Uli
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
citation:
ama: 'Huszár K, Spreer J, Wagner U. On the treewidth of triangulated 3-manifolds.
In: Vol 99. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2018. doi:10.4230/LIPIcs.SoCG.2018.46'
apa: 'Huszár, K., Spreer, J., & Wagner, U. (2018). On the treewidth of triangulated
3-manifolds (Vol. 99). Presented at the SoCG: Symposium on Computational Geometry,
Budapest, Hungary: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.SoCG.2018.46'
chicago: Huszár, Kristóf, Jonathan Spreer, and Uli Wagner. “On the Treewidth of
Triangulated 3-Manifolds,” Vol. 99. Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
2018. https://doi.org/10.4230/LIPIcs.SoCG.2018.46.
ieee: 'K. Huszár, J. Spreer, and U. Wagner, “On the treewidth of triangulated 3-manifolds,”
presented at the SoCG: Symposium on Computational Geometry, Budapest, Hungary,
2018, vol. 99.'
ista: 'Huszár K, Spreer J, Wagner U. 2018. On the treewidth of triangulated 3-manifolds.
SoCG: Symposium on Computational Geometry, LIPIcs, vol. 99, 46.'
mla: Huszár, Kristóf, et al. On the Treewidth of Triangulated 3-Manifolds.
Vol. 99, 46, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2018, doi:10.4230/LIPIcs.SoCG.2018.46.
short: K. Huszár, J. Spreer, U. Wagner, in:, Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2018.
conference:
end_date: 2018-06-14
location: Budapest, Hungary
name: 'SoCG: Symposium on Computational Geometry'
start_date: 2018-06-11
date_created: 2018-12-11T11:45:37Z
date_published: 2018-06-01T00:00:00Z
date_updated: 2023-09-06T11:13:41Z
day: '01'
ddc:
- '516'
- '000'
department:
- _id: UlWa
doi: 10.4230/LIPIcs.SoCG.2018.46
external_id:
arxiv:
- '1712.00434'
file:
- access_level: open_access
checksum: 530d084116778135d5bffaa317479cac
content_type: application/pdf
creator: dernst
date_created: 2018-12-17T15:32:38Z
date_updated: 2020-07-14T12:45:51Z
file_id: '5713'
file_name: 2018_LIPIcs_Huszar.pdf
file_size: 642522
relation: main_file
file_date_updated: 2020-07-14T12:45:51Z
has_accepted_license: '1'
intvolume: ' 99'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Submitted Version
publication_identifier:
issn:
- '18688969'
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '7614'
quality_controlled: '1'
related_material:
record:
- id: '7093'
relation: later_version
status: public
scopus_import: 1
status: public
title: On the treewidth of triangulated 3-manifolds
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 99
year: '2018'
...
---
_id: '13059'
abstract:
- lang: eng
text: "This dataset contains a GitHub repository containing all the data, analysis,
Nextflow workflows and Jupyter notebooks to replicate the manuscript titled \"Fast
and accurate large multiple sequence alignments with a root-to-leaf regressive
method\".\r\nIt also contains the Multiple Sequence Alignments (MSAs) generated
and well as the main figures and tables from the manuscript.\r\nThe repository
is also available at GitHub (https://github.com/cbcrg/dpa-analysis) release `v1.2`.\r\nFor
details on how to use the regressive alignment algorithm, see the T-Coffee software
suite (https://github.com/cbcrg/tcoffee)."
article_processing_charge: No
author:
- first_name: Edgar
full_name: Garriga, Edgar
last_name: Garriga
- first_name: Paolo
full_name: di Tommaso, Paolo
last_name: di Tommaso
- first_name: Cedrik
full_name: Magis, Cedrik
last_name: Magis
- first_name: Ionas
full_name: Erb, Ionas
last_name: Erb
- first_name: Leila
full_name: Mansouri, Leila
last_name: Mansouri
- first_name: Athanasios
full_name: Baltzis, Athanasios
last_name: Baltzis
- first_name: Hafid
full_name: Laayouni, Hafid
last_name: Laayouni
- first_name: Fyodor
full_name: Kondrashov, Fyodor
id: 44FDEF62-F248-11E8-B48F-1D18A9856A87
last_name: Kondrashov
orcid: 0000-0001-8243-4694
- first_name: Evan
full_name: Floden, Evan
last_name: Floden
- first_name: Cedric
full_name: Notredame, Cedric
last_name: Notredame
citation:
ama: Garriga E, di Tommaso P, Magis C, et al. Fast and accurate large multiple sequence
alignments with a root-to-leaf regressive method. 2018. doi:10.5281/ZENODO.2025846
apa: Garriga, E., di Tommaso, P., Magis, C., Erb, I., Mansouri, L., Baltzis, A.,
… Notredame, C. (2018). Fast and accurate large multiple sequence alignments with
a root-to-leaf regressive method. Zenodo. https://doi.org/10.5281/ZENODO.2025846
chicago: Garriga, Edgar, Paolo di Tommaso, Cedrik Magis, Ionas Erb, Leila Mansouri,
Athanasios Baltzis, Hafid Laayouni, Fyodor Kondrashov, Evan Floden, and Cedric
Notredame. “Fast and Accurate Large Multiple Sequence Alignments with a Root-to-Leaf
Regressive Method.” Zenodo, 2018. https://doi.org/10.5281/ZENODO.2025846.
ieee: E. Garriga et al., “Fast and accurate large multiple sequence alignments
with a root-to-leaf regressive method.” Zenodo, 2018.
ista: Garriga E, di Tommaso P, Magis C, Erb I, Mansouri L, Baltzis A, Laayouni H,
Kondrashov F, Floden E, Notredame C. 2018. Fast and accurate large multiple sequence
alignments with a root-to-leaf regressive method, Zenodo, 10.5281/ZENODO.2025846.
mla: Garriga, Edgar, et al. Fast and Accurate Large Multiple Sequence Alignments
with a Root-to-Leaf Regressive Method. Zenodo, 2018, doi:10.5281/ZENODO.2025846.
short: E. Garriga, P. di Tommaso, C. Magis, I. Erb, L. Mansouri, A. Baltzis, H.
Laayouni, F. Kondrashov, E. Floden, C. Notredame, (2018).
date_created: 2023-05-23T16:08:20Z
date_published: 2018-12-07T00:00:00Z
date_updated: 2023-09-06T14:32:51Z
day: '07'
ddc:
- '570'
department:
- _id: FyKo
doi: 10.5281/ZENODO.2025846
main_file_link:
- open_access: '1'
url: https://doi.org/10.5281/zenodo.3271452
month: '12'
oa: 1
oa_version: Published Version
publisher: Zenodo
related_material:
record:
- id: '7181'
relation: used_in_publication
status: public
status: public
title: Fast and accurate large multiple sequence alignments with a root-to-leaf regressive
method
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2018'
...
---
_id: '49'
abstract:
- lang: eng
text: Nowadays, quantum computation is receiving more and more attention as an alternative
to the classical way of computing. For realizing a quantum computer, different
devices are investigated as potential quantum bits. In this thesis, the focus
is on Ge hut wires, which turned out to be promising candidates for implementing
hole spin quantum bits. The advantages of Ge as a material system are the low
hyperfine interaction for holes and the strong spin orbit coupling, as well as
the compatibility with the highly developed CMOS processes in industry. In addition,
Ge can also be isotopically purified which is expected to boost the spin coherence
times. The strong spin orbit interaction for holes in Ge on the one hand enables
the full electrical control of the quantum bit and on the other hand should allow
short spin manipulation times. Starting with a bare Si wafer, this work covers
the entire process reaching from growth over the fabrication and characterization
of hut wire devices up to the demonstration of hole spin resonance. From experiments
with single quantum dots, a large g-factor anisotropy between the in-plane and
the out-of-plane direction was found. A comparison to a theoretical model unveiled
the heavy-hole character of the lowest energy states. The second part of the thesis
addresses double quantum dot devices, which were realized by adding two gate electrodes
to a hut wire. In such devices, Pauli spin blockade was observed, which can serve
as a read-out mechanism for spin quantum bits. Applying oscillating electric fields
in spin blockade allowed the demonstration of continuous spin rotations and the
extraction of a lower bound for the spin dephasing time. Despite the strong spin
orbit coupling in Ge, the obtained value for the dephasing time is comparable
to what has been recently reported for holes in Si. All in all, the presented
results point out the high potential of Ge hut wires as a platform for long-lived,
fast and fully electrically tunable hole spin quantum bits.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Hannes
full_name: Watzinger, Hannes
id: 35DF8E50-F248-11E8-B48F-1D18A9856A87
last_name: Watzinger
citation:
ama: Watzinger H. Ge hut wires - from growth to hole spin resonance. 2018. doi:10.15479/AT:ISTA:th_1033
apa: Watzinger, H. (2018). Ge hut wires - from growth to hole spin resonance.
Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:th_1033
chicago: Watzinger, Hannes. “Ge Hut Wires - from Growth to Hole Spin Resonance.”
Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:th_1033.
ieee: H. Watzinger, “Ge hut wires - from growth to hole spin resonance,” Institute
of Science and Technology Austria, 2018.
ista: Watzinger H. 2018. Ge hut wires - from growth to hole spin resonance. Institute
of Science and Technology Austria.
mla: Watzinger, Hannes. Ge Hut Wires - from Growth to Hole Spin Resonance.
Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:th_1033.
short: H. Watzinger, Ge Hut Wires - from Growth to Hole Spin Resonance, Institute
of Science and Technology Austria, 2018.
date_created: 2018-12-11T11:44:21Z
date_published: 2018-07-30T00:00:00Z
date_updated: 2023-09-07T12:27:43Z
day: '30'
ddc:
- '530'
degree_awarded: PhD
department:
- _id: GeKa
doi: 10.15479/AT:ISTA:th_1033
file:
- access_level: open_access
checksum: b653b5216251f938ddbeafd1de88667c
content_type: application/pdf
creator: dernst
date_created: 2019-04-09T07:13:28Z
date_updated: 2020-07-14T12:46:35Z
file_id: '6249'
file_name: 2018_Thesis_Watzinger.pdf
file_size: 85539748
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checksum: 39bcf8de7ac5b1bb516b11ce2f966785
content_type: application/zip
creator: dernst
date_created: 2019-04-09T07:13:27Z
date_updated: 2020-07-14T12:46:35Z
file_id: '6250'
file_name: 2018_Thesis_Watzinger_source.zip
file_size: 21830697
relation: source_file
file_date_updated: 2020-07-14T12:46:35Z
has_accepted_license: '1'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: '77'
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
publist_id: '8005'
pubrep_id: '1033'
status: public
supervisor:
- first_name: Georgios
full_name: Katsaros, Georgios
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
orcid: 0000-0001-8342-202X
title: Ge hut wires - from growth to hole spin resonance
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2018'
...
---
_id: '201'
abstract:
- lang: eng
text: 'We describe arrangements of three-dimensional spheres from a geometrical
and topological point of view. Real data (fitting this setup) often consist of
soft spheres which show certain degree of deformation while strongly packing against
each other. In this context, we answer the following questions: If we model a
soft packing of spheres by hard spheres that are allowed to overlap, can we measure
the volume in the overlapped areas? Can we be more specific about the overlap
volume, i.e. quantify how much volume is there covered exactly twice, three times,
or k times? What would be a good optimization criteria that rule the arrangement
of soft spheres while making a good use of the available space? Fixing a particular
criterion, what would be the optimal sphere configuration? The first result of
this thesis are short formulas for the computation of volumes covered by at least
k of the balls. The formulas exploit information contained in the order-k Voronoi
diagrams and its closely related Level-k complex. The used complexes lead to a
natural generalization into poset diagrams, a theoretical formalism that contains
the order-k and degree-k diagrams as special cases. In parallel, we define different
criteria to determine what could be considered an optimal arrangement from a geometrical
point of view. Fixing a criterion, we find optimal soft packing configurations
in 2D and 3D where the ball centers lie on a lattice. As a last step, we use tools
from computational topology on real physical data, to show the potentials of higher-order
diagrams in the description of melting crystals. The results of the experiments
leaves us with an open window to apply the theories developed in this thesis in
real applications.'
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Mabel
full_name: Iglesias Ham, Mabel
id: 41B58C0C-F248-11E8-B48F-1D18A9856A87
last_name: Iglesias Ham
citation:
ama: Iglesias Ham M. Multiple covers with balls. 2018. doi:10.15479/AT:ISTA:th_1026
apa: Iglesias Ham, M. (2018). Multiple covers with balls. Institute of Science
and Technology Austria. https://doi.org/10.15479/AT:ISTA:th_1026
chicago: Iglesias Ham, Mabel. “Multiple Covers with Balls.” Institute of Science
and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:th_1026.
ieee: M. Iglesias Ham, “Multiple covers with balls,” Institute of Science and Technology
Austria, 2018.
ista: Iglesias Ham M. 2018. Multiple covers with balls. Institute of Science and
Technology Austria.
mla: Iglesias Ham, Mabel. Multiple Covers with Balls. Institute of Science
and Technology Austria, 2018, doi:10.15479/AT:ISTA:th_1026.
short: M. Iglesias Ham, Multiple Covers with Balls, Institute of Science and Technology
Austria, 2018.
date_created: 2018-12-11T11:45:10Z
date_published: 2018-06-11T00:00:00Z
date_updated: 2023-09-07T12:25:32Z
day: '11'
ddc:
- '514'
- '516'
degree_awarded: PhD
department:
- _id: HeEd
doi: 10.15479/AT:ISTA:th_1026
file:
- access_level: closed
checksum: dd699303623e96d1478a6ae07210dd05
content_type: application/zip
creator: kschuh
date_created: 2019-02-05T07:43:31Z
date_updated: 2020-07-14T12:45:24Z
file_id: '5918'
file_name: IST-2018-1025-v2+5_ist-thesis-iglesias-11June2018(1).zip
file_size: 11827713
relation: source_file
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checksum: ba163849a190d2b41d66fef0e4983294
content_type: application/pdf
creator: kschuh
date_created: 2019-02-05T07:43:45Z
date_updated: 2020-07-14T12:45:24Z
file_id: '5919'
file_name: IST-2018-1025-v2+4_ThesisIglesiasFinal11June2018.pdf
file_size: 4783846
relation: main_file
file_date_updated: 2020-07-14T12:45:24Z
has_accepted_license: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: '171'
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
publist_id: '7712'
pubrep_id: '1026'
status: public
supervisor:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
title: Multiple covers with balls
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2018'
...
---
_id: '68'
abstract:
- lang: eng
text: The most common assumption made in statistical learning theory is the assumption
of the independent and identically distributed (i.i.d.) data. While being very
convenient mathematically, it is often very clearly violated in practice. This
disparity between the machine learning theory and applications underlies a growing
demand in the development of algorithms that learn from dependent data and theory
that can provide generalization guarantees similar to the independent situations.
This thesis is dedicated to two variants of dependencies that can arise in practice.
One is a dependence on the level of samples in a single learning task. Another
dependency type arises in the multi-task setting when the tasks are dependent
on each other even though the data for them can be i.i.d. In both cases we model
the data (samples or tasks) as stochastic processes and introduce new algorithms
for both settings that take into account and exploit the resulting dependencies.
We prove the theoretical guarantees on the performance of the introduced algorithms
under different evaluation criteria and, in addition, we compliment the theoretical
study by the empirical one, where we evaluate some of the algorithms on two real
world datasets to highlight their practical applicability.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Alexander
full_name: Zimin, Alexander
id: 37099E9C-F248-11E8-B48F-1D18A9856A87
last_name: Zimin
citation:
ama: Zimin A. Learning from dependent data. 2018. doi:10.15479/AT:ISTA:TH1048
apa: Zimin, A. (2018). Learning from dependent data. Institute of Science
and Technology Austria. https://doi.org/10.15479/AT:ISTA:TH1048
chicago: Zimin, Alexander. “Learning from Dependent Data.” Institute of Science
and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:TH1048.
ieee: A. Zimin, “Learning from dependent data,” Institute of Science and Technology
Austria, 2018.
ista: Zimin A. 2018. Learning from dependent data. Institute of Science and Technology
Austria.
mla: Zimin, Alexander. Learning from Dependent Data. Institute of Science
and Technology Austria, 2018, doi:10.15479/AT:ISTA:TH1048.
short: A. Zimin, Learning from Dependent Data, Institute of Science and Technology
Austria, 2018.
date_created: 2018-12-11T11:44:27Z
date_published: 2018-09-01T00:00:00Z
date_updated: 2023-09-07T12:29:07Z
day: '01'
ddc:
- '004'
- '519'
degree_awarded: PhD
department:
- _id: ChLa
doi: 10.15479/AT:ISTA:TH1048
ec_funded: 1
file:
- access_level: open_access
checksum: e849dd40a915e4d6c5572b51b517f098
content_type: application/pdf
creator: dernst
date_created: 2019-04-09T07:32:47Z
date_updated: 2020-07-14T12:47:40Z
file_id: '6253'
file_name: 2018_Thesis_Zimin.pdf
file_size: 1036137
relation: main_file
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checksum: da092153cec55c97461bd53c45c5d139
content_type: application/zip
creator: dernst
date_created: 2019-04-09T07:32:47Z
date_updated: 2020-07-14T12:47:40Z
file_id: '6254'
file_name: 2018_Thesis_Zimin_Source.zip
file_size: 637490
relation: source_file
file_date_updated: 2020-07-14T12:47:40Z
has_accepted_license: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: '92'
project:
- _id: 2532554C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '308036'
name: Lifelong Learning of Visual Scene Understanding
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
publist_id: '7986'
pubrep_id: '1048'
status: public
supervisor:
- first_name: Christoph
full_name: Lampert, Christoph
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
title: Learning from dependent data
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2018'
...
---
_id: '83'
abstract:
- lang: eng
text: "A proof system is a protocol between a prover and a verifier over a common
input in which an honest prover convinces the verifier of the validity of true
statements. Motivated by the success of decentralized cryptocurrencies, exemplified
by Bitcoin, the focus of this thesis will be on proof systems which found applications
in some sustainable alternatives to Bitcoin, such as the Spacemint and Chia cryptocurrencies.
In particular, we focus on proofs of space and proofs of sequential work.\r\nProofs
of space (PoSpace) were suggested as more ecological, economical, and egalitarian
alternative to the energy-wasteful proof-of-work mining of Bitcoin. However, the
state-of-the-art constructions of PoSpace are based on sophisticated graph pebbling
lower bounds, and are therefore complex. Moreover, when these PoSpace are used
in cryptocurrencies like Spacemint, miners can only start mining after ensuring
that a commitment to their space is already added in a special transaction to
the blockchain. Proofs of sequential work (PoSW) are proof systems in which a
prover, upon receiving a statement x and a time parameter T, computes a proof
which convinces the verifier that T time units had passed since x was received.
Whereas Spacemint assumes synchrony to retain some interesting Bitcoin dynamics,
Chia requires PoSW with unique proofs, i.e., PoSW in which it is hard to come
up with more than one accepting proof for any true statement. In this thesis we
construct simple and practically-efficient PoSpace and PoSW. When using our PoSpace
in cryptocurrencies, miners can start mining on the fly, like in Bitcoin, and
unlike current constructions of PoSW, which either achieve efficient verification
of sequential work, or faster-than-recomputing verification of correctness of
proofs, but not both at the same time, ours achieve the best of these two worlds."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Hamza M
full_name: Abusalah, Hamza M
id: 40297222-F248-11E8-B48F-1D18A9856A87
last_name: Abusalah
citation:
ama: Abusalah HM. Proof systems for sustainable decentralized cryptocurrencies.
2018. doi:10.15479/AT:ISTA:TH_1046
apa: Abusalah, H. M. (2018). Proof systems for sustainable decentralized cryptocurrencies.
Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:TH_1046
chicago: Abusalah, Hamza M. “Proof Systems for Sustainable Decentralized Cryptocurrencies.”
Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:TH_1046.
ieee: H. M. Abusalah, “Proof systems for sustainable decentralized cryptocurrencies,”
Institute of Science and Technology Austria, 2018.
ista: Abusalah HM. 2018. Proof systems for sustainable decentralized cryptocurrencies.
Institute of Science and Technology Austria.
mla: Abusalah, Hamza M. Proof Systems for Sustainable Decentralized Cryptocurrencies.
Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:TH_1046.
short: H.M. Abusalah, Proof Systems for Sustainable Decentralized Cryptocurrencies,
Institute of Science and Technology Austria, 2018.
date_created: 2018-12-11T11:44:32Z
date_published: 2018-09-05T00:00:00Z
date_updated: 2023-09-07T12:30:23Z
day: '05'
ddc:
- '004'
degree_awarded: PhD
department:
- _id: KrPi
doi: 10.15479/AT:ISTA:TH_1046
ec_funded: 1
file:
- access_level: open_access
checksum: c4b5f7d111755d1396787f41886fc674
content_type: application/pdf
creator: dernst
date_created: 2019-04-09T06:43:41Z
date_updated: 2020-07-14T12:48:11Z
file_id: '6245'
file_name: 2018_Thesis_Abusalah.pdf
file_size: 876241
relation: main_file
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checksum: 0f382ac56b471c48fd907d63eb87dafe
content_type: application/x-gzip
creator: dernst
date_created: 2019-04-09T06:43:41Z
date_updated: 2020-07-14T12:48:11Z
file_id: '6246'
file_name: 2018_Thesis_Abusalah_source.tar.gz
file_size: 2029190
relation: source_file
file_date_updated: 2020-07-14T12:48:11Z
has_accepted_license: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: '59'
project:
- _id: 258C570E-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '259668'
name: Provable Security for Physical Cryptography
- _id: 258AA5B2-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '682815'
name: Teaching Old Crypto New Tricks
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
publist_id: '7971'
pubrep_id: '1046'
related_material:
record:
- id: '1229'
relation: part_of_dissertation
status: public
- id: '1235'
relation: part_of_dissertation
status: public
- id: '1236'
relation: part_of_dissertation
status: public
- id: '559'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Krzysztof Z
full_name: Pietrzak, Krzysztof Z
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
title: Proof systems for sustainable decentralized cryptocurrencies
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2018'
...
---
_id: '197'
abstract:
- lang: eng
text: Modern computer vision systems heavily rely on statistical machine learning
models, which typically require large amounts of labeled data to be learned reliably.
Moreover, very recently computer vision research widely adopted techniques for
representation learning, which further increase the demand for labeled data. However,
for many important practical problems there is relatively small amount of labeled
data available, so it is problematic to leverage full potential of the representation
learning methods. One way to overcome this obstacle is to invest substantial resources
into producing large labelled datasets. Unfortunately, this can be prohibitively
expensive in practice. In this thesis we focus on the alternative way of tackling
the aforementioned issue. We concentrate on methods, which make use of weakly-labeled
or even unlabeled data. Specifically, the first half of the thesis is dedicated
to the semantic image segmentation task. We develop a technique, which achieves
competitive segmentation performance and only requires annotations in a form of
global image-level labels instead of dense segmentation masks. Subsequently, we
present a new methodology, which further improves segmentation performance by
leveraging tiny additional feedback from a human annotator. By using our methods
practitioners can greatly reduce the amount of data annotation effort, which is
required to learn modern image segmentation models. In the second half of the
thesis we focus on methods for learning from unlabeled visual data. We study a
family of autoregressive models for modeling structure of natural images and discuss
potential applications of these models. Moreover, we conduct in-depth study of
one of these applications, where we develop the state-of-the-art model for the
probabilistic image colorization task.
acknowledgement: I also gratefully acknowledge the support of NVIDIA Corporation with
the donation of the GPUs used for this research.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Alexander
full_name: Kolesnikov, Alexander
id: 2D157DB6-F248-11E8-B48F-1D18A9856A87
last_name: Kolesnikov
citation:
ama: Kolesnikov A. Weakly-Supervised Segmentation and Unsupervised Modeling of Natural
Images. 2018. doi:10.15479/AT:ISTA:th_1021
apa: Kolesnikov, A. (2018). Weakly-Supervised Segmentation and Unsupervised Modeling
of Natural Images. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:th_1021
chicago: Kolesnikov, Alexander. “Weakly-Supervised Segmentation and Unsupervised
Modeling of Natural Images.” Institute of Science and Technology Austria, 2018.
https://doi.org/10.15479/AT:ISTA:th_1021.
ieee: A. Kolesnikov, “Weakly-Supervised Segmentation and Unsupervised Modeling of
Natural Images,” Institute of Science and Technology Austria, 2018.
ista: Kolesnikov A. 2018. Weakly-Supervised Segmentation and Unsupervised Modeling
of Natural Images. Institute of Science and Technology Austria.
mla: Kolesnikov, Alexander. Weakly-Supervised Segmentation and Unsupervised Modeling
of Natural Images. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:th_1021.
short: A. Kolesnikov, Weakly-Supervised Segmentation and Unsupervised Modeling of
Natural Images, Institute of Science and Technology Austria, 2018.
date_created: 2018-12-11T11:45:09Z
date_published: 2018-05-25T00:00:00Z
date_updated: 2023-09-07T12:51:46Z
day: '25'
ddc:
- '004'
degree_awarded: PhD
department:
- _id: ChLa
doi: 10.15479/AT:ISTA:th_1021
ec_funded: 1
file:
- access_level: open_access
checksum: bc678e02468d8ebc39dc7267dfb0a1c4
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:14:57Z
date_updated: 2020-07-14T12:45:22Z
file_id: '5113'
file_name: IST-2018-1021-v1+1_thesis-unsigned-pdfa.pdf
file_size: 12918758
relation: main_file
- access_level: closed
checksum: bc66973b086da5a043f1162dcfb1fde4
content_type: application/zip
creator: dernst
date_created: 2019-04-05T09:34:49Z
date_updated: 2020-07-14T12:45:22Z
file_id: '6225'
file_name: 2018_Thesis_Kolesnikov_source.zip
file_size: 55973760
relation: source_file
file_date_updated: 2020-07-14T12:45:22Z
has_accepted_license: '1'
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: '113'
project:
- _id: 2532554C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '308036'
name: Lifelong Learning of Visual Scene Understanding
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
publist_id: '7718'
pubrep_id: '1021'
status: public
supervisor:
- first_name: Christoph
full_name: Lampert, Christoph
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
title: Weakly-Supervised Segmentation and Unsupervised Modeling of Natural Images
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2018'
...
---
_id: '6774'
abstract:
- lang: eng
text: "A central problem of algebraic topology is to understand the homotopy groups
\ \U0001D70B\U0001D451(\U0001D44B) of a topological space X. For the computational
version of the problem, it is well known that there is no algorithm to decide
whether the fundamental group \U0001D70B1(\U0001D44B) of a given finite simplicial
complex X is trivial. On the other hand, there are several algorithms that, given
a finite simplicial complex X that is simply connected (i.e., with \U0001D70B1(\U0001D44B)
\ trivial), compute the higher homotopy group \U0001D70B\U0001D451(\U0001D44B)
\ for any given \U0001D451≥2 . However, these algorithms come with a caveat:
They compute the isomorphism type of \U0001D70B\U0001D451(\U0001D44B) , \U0001D451≥2
\ as an abstract finitely generated abelian group given by generators and relations,
but they work with very implicit representations of the elements of \U0001D70B\U0001D451(\U0001D44B)
. Converting elements of this abstract group into explicit geometric maps from
the d-dimensional sphere \U0001D446\U0001D451 to X has been one of the main
unsolved problems in the emerging field of computational homotopy theory. Here
we present an algorithm that, given a simply connected space X, computes \U0001D70B\U0001D451(\U0001D44B)
\ and represents its elements as simplicial maps from a suitable triangulation
of the d-sphere \U0001D446\U0001D451 to X. For fixed d, the algorithm runs
in time exponential in size(\U0001D44B) , the number of simplices of X. Moreover,
we prove that this is optimal: For every fixed \U0001D451≥2 , we construct a
family of simply connected spaces X such that for any simplicial map representing
a generator of \U0001D70B\U0001D451(\U0001D44B) , the size of the triangulation
of \U0001D446\U0001D451 on which the map is defined, is exponential in size(\U0001D44B)
."
article_type: original
author:
- first_name: Marek
full_name: Filakovský, Marek
id: 3E8AF77E-F248-11E8-B48F-1D18A9856A87
last_name: Filakovský
- first_name: Peter
full_name: Franek, Peter
id: 473294AE-F248-11E8-B48F-1D18A9856A87
last_name: Franek
orcid: 0000-0001-8878-8397
- first_name: Uli
full_name: Wagner, Uli
id: 36690CA2-F248-11E8-B48F-1D18A9856A87
last_name: Wagner
orcid: 0000-0002-1494-0568
- first_name: Stephan Y
full_name: Zhechev, Stephan Y
id: 3AA52972-F248-11E8-B48F-1D18A9856A87
last_name: Zhechev
citation:
ama: Filakovský M, Franek P, Wagner U, Zhechev SY. Computing simplicial representatives
of homotopy group elements. Journal of Applied and Computational Topology.
2018;2(3-4):177-231. doi:10.1007/s41468-018-0021-5
apa: Filakovský, M., Franek, P., Wagner, U., & Zhechev, S. Y. (2018). Computing
simplicial representatives of homotopy group elements. Journal of Applied and
Computational Topology. Springer. https://doi.org/10.1007/s41468-018-0021-5
chicago: Filakovský, Marek, Peter Franek, Uli Wagner, and Stephan Y Zhechev. “Computing
Simplicial Representatives of Homotopy Group Elements.” Journal of Applied
and Computational Topology. Springer, 2018. https://doi.org/10.1007/s41468-018-0021-5.
ieee: M. Filakovský, P. Franek, U. Wagner, and S. Y. Zhechev, “Computing simplicial
representatives of homotopy group elements,” Journal of Applied and Computational
Topology, vol. 2, no. 3–4. Springer, pp. 177–231, 2018.
ista: Filakovský M, Franek P, Wagner U, Zhechev SY. 2018. Computing simplicial representatives
of homotopy group elements. Journal of Applied and Computational Topology. 2(3–4),
177–231.
mla: Filakovský, Marek, et al. “Computing Simplicial Representatives of Homotopy
Group Elements.” Journal of Applied and Computational Topology, vol. 2,
no. 3–4, Springer, 2018, pp. 177–231, doi:10.1007/s41468-018-0021-5.
short: M. Filakovský, P. Franek, U. Wagner, S.Y. Zhechev, Journal of Applied and
Computational Topology 2 (2018) 177–231.
date_created: 2019-08-08T06:47:40Z
date_published: 2018-12-01T00:00:00Z
date_updated: 2023-09-07T13:10:36Z
day: '01'
ddc:
- '514'
department:
- _id: UlWa
doi: 10.1007/s41468-018-0021-5
file:
- access_level: open_access
checksum: cf9e7fcd2a113dd4828774fc75cdb7e8
content_type: application/pdf
creator: dernst
date_created: 2019-08-08T06:55:21Z
date_updated: 2020-07-14T12:47:40Z
file_id: '6775'
file_name: 2018_JourAppliedComputTopology_Filakovsky.pdf
file_size: 1056278
relation: main_file
file_date_updated: 2020-07-14T12:47:40Z
has_accepted_license: '1'
intvolume: ' 2'
issue: 3-4
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 177-231
project:
- _id: 25F8B9BC-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: M01980
name: Robust invariants of Nonlinear Systems
- _id: 3AC91DDA-15DF-11EA-824D-93A3E7B544D1
call_identifier: FWF
name: FWF Open Access Fund
publication: Journal of Applied and Computational Topology
publication_identifier:
eissn:
- 2367-1734
issn:
- 2367-1726
publication_status: published
publisher: Springer
quality_controlled: '1'
related_material:
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status: public
status: public
title: Computing simplicial representatives of homotopy group elements
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 2
year: '2018'
...
---
_id: '133'
abstract:
- lang: eng
text: Synchronous programs are easy to specify because the side effects of an operation
are finished by the time the invocation of the operation returns to the caller.
Asynchronous programs, on the other hand, are difficult to specify because there
are side effects due to pending computation scheduled as a result of the invocation
of an operation. They are also difficult to verify because of the large number
of possible interleavings of concurrent computation threads. We present synchronization,
a new proof rule that simplifies the verification of asynchronous programs by
introducing the fiction, for proof purposes, that asynchronous operations complete
synchronously. Synchronization summarizes an asynchronous computation as immediate
atomic effect. Modular verification is enabled via pending asynchronous calls
in atomic summaries, and a complementary proof rule that eliminates pending asynchronous
calls when components and their specifications are composed. We evaluate synchronization
in the context of a multi-layer refinement verification methodology on a collection
of benchmark programs.
alternative_title:
- LIPIcs
article_number: '21'
author:
- first_name: Bernhard
full_name: Kragl, Bernhard
id: 320FC952-F248-11E8-B48F-1D18A9856A87
last_name: Kragl
orcid: 0000-0001-7745-9117
- first_name: Shaz
full_name: Qadeer, Shaz
last_name: Qadeer
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000−0002−2985−7724
citation:
ama: 'Kragl B, Qadeer S, Henzinger TA. Synchronizing the asynchronous. In: Vol 118.
Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2018. doi:10.4230/LIPIcs.CONCUR.2018.21'
apa: 'Kragl, B., Qadeer, S., & Henzinger, T. A. (2018). Synchronizing the asynchronous
(Vol. 118). Presented at the CONCUR: International Conference on Concurrency Theory,
Beijing, China: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.CONCUR.2018.21'
chicago: Kragl, Bernhard, Shaz Qadeer, and Thomas A Henzinger. “Synchronizing the
Asynchronous,” Vol. 118. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2018.
https://doi.org/10.4230/LIPIcs.CONCUR.2018.21.
ieee: 'B. Kragl, S. Qadeer, and T. A. Henzinger, “Synchronizing the asynchronous,”
presented at the CONCUR: International Conference on Concurrency Theory, Beijing,
China, 2018, vol. 118.'
ista: 'Kragl B, Qadeer S, Henzinger TA. 2018. Synchronizing the asynchronous. CONCUR:
International Conference on Concurrency Theory, LIPIcs, vol. 118, 21.'
mla: Kragl, Bernhard, et al. Synchronizing the Asynchronous. Vol. 118, 21,
Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2018, doi:10.4230/LIPIcs.CONCUR.2018.21.
short: B. Kragl, S. Qadeer, T.A. Henzinger, in:, Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2018.
conference:
end_date: 2018-09-07
location: Beijing, China
name: 'CONCUR: International Conference on Concurrency Theory'
start_date: 2018-09-04
date_created: 2018-12-11T11:44:48Z
date_published: 2018-08-13T00:00:00Z
date_updated: 2023-09-07T13:18:00Z
day: '13'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.4230/LIPIcs.CONCUR.2018.21
file:
- access_level: open_access
checksum: c90895f4c5fafc18ddc54d1c8848077e
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:18:46Z
date_updated: 2020-07-14T12:44:44Z
file_id: '5368'
file_name: IST-2018-853-v2+2_concur2018.pdf
file_size: 745438
relation: main_file
file_date_updated: 2020-07-14T12:44:44Z
has_accepted_license: '1'
intvolume: ' 118'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: 25F2ACDE-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11402-N23
name: Rigorous Systems Engineering
- _id: 25F5A88A-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11402-N23
name: Moderne Concurrency Paradigms
publication_identifier:
issn:
- '18688969'
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '7790'
pubrep_id: '1039'
quality_controlled: '1'
related_material:
record:
- id: '6426'
relation: earlier_version
status: public
- id: '8332'
relation: dissertation_contains
status: public
scopus_import: 1
status: public
title: Synchronizing the asynchronous
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 118
year: '2018'
...
---
_id: '187'
abstract:
- lang: eng
text: 'Given a locally finite X ⊆ ℝd and a radius r ≥ 0, the k-fold cover of X and
r consists of all points in ℝd that have k or more points of X within distance
r. We consider two filtrations - one in scale obtained by fixing k and increasing
r, and the other in depth obtained by fixing r and decreasing k - and we compute
the persistence diagrams of both. While standard methods suffice for the filtration
in scale, we need novel geometric and topological concepts for the filtration
in depth. In particular, we introduce a rhomboid tiling in ℝd+1 whose horizontal
integer slices are the order-k Delaunay mosaics of X, and construct a zigzag module
from Delaunay mosaics that is isomorphic to the persistence module of the multi-covers. '
acknowledgement: This work is partially supported by the DFG Collaborative Research
Center TRR 109, ‘Discretization in Geometry and Dynamics’, through grant no. I02979-N35
of the Austrian Science Fund (FWF).
alternative_title:
- LIPIcs
article_number: '34'
author:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Georg F
full_name: Osang, Georg F
id: 464B40D6-F248-11E8-B48F-1D18A9856A87
last_name: Osang
orcid: 0000-0002-8882-5116
citation:
ama: 'Edelsbrunner H, Osang GF. The multi-cover persistence of Euclidean balls.
In: Vol 99. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2018. doi:10.4230/LIPIcs.SoCG.2018.34'
apa: 'Edelsbrunner, H., & Osang, G. F. (2018). The multi-cover persistence of
Euclidean balls (Vol. 99). Presented at the SoCG: Symposium on Computational Geometry,
Budapest, Hungary: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.SoCG.2018.34'
chicago: Edelsbrunner, Herbert, and Georg F Osang. “The Multi-Cover Persistence
of Euclidean Balls,” Vol. 99. Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
2018. https://doi.org/10.4230/LIPIcs.SoCG.2018.34.
ieee: 'H. Edelsbrunner and G. F. Osang, “The multi-cover persistence of Euclidean
balls,” presented at the SoCG: Symposium on Computational Geometry, Budapest,
Hungary, 2018, vol. 99.'
ista: 'Edelsbrunner H, Osang GF. 2018. The multi-cover persistence of Euclidean
balls. SoCG: Symposium on Computational Geometry, LIPIcs, vol. 99, 34.'
mla: Edelsbrunner, Herbert, and Georg F. Osang. The Multi-Cover Persistence of
Euclidean Balls. Vol. 99, 34, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
2018, doi:10.4230/LIPIcs.SoCG.2018.34.
short: H. Edelsbrunner, G.F. Osang, in:, Schloss Dagstuhl - Leibniz-Zentrum für
Informatik, 2018.
conference:
end_date: 2018-06-14
location: Budapest, Hungary
name: 'SoCG: Symposium on Computational Geometry'
start_date: 2018-06-11
date_created: 2018-12-11T11:45:05Z
date_published: 2018-06-11T00:00:00Z
date_updated: 2023-09-07T13:29:00Z
day: '11'
ddc:
- '516'
department:
- _id: HeEd
doi: 10.4230/LIPIcs.SoCG.2018.34
file:
- access_level: open_access
checksum: d8c0533ad0018eb4ed1077475eb8fc18
content_type: application/pdf
creator: dernst
date_created: 2018-12-18T09:27:22Z
date_updated: 2020-07-14T12:45:19Z
file_id: '5738'
file_name: 2018_LIPIcs_Edelsbrunner_Osang.pdf
file_size: 528018
relation: main_file
file_date_updated: 2020-07-14T12:45:19Z
has_accepted_license: '1'
intvolume: ' 99'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
project:
- _id: 2561EBF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I02979-N35
name: Persistence and stability of geometric complexes
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
publist_id: '7732'
quality_controlled: '1'
related_material:
record:
- id: '9317'
relation: later_version
status: public
- id: '9056'
relation: dissertation_contains
status: public
scopus_import: 1
status: public
title: The multi-cover persistence of Euclidean balls
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 99
year: '2018'
...
---
_id: '692'
abstract:
- lang: eng
text: We consider families of confocal conics and two pencils of Apollonian circles
having the same foci. We will show that these families of curves generate trivial
3-webs and find the exact formulas describing them.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Arseniy
full_name: Akopyan, Arseniy
id: 430D2C90-F248-11E8-B48F-1D18A9856A87
last_name: Akopyan
orcid: 0000-0002-2548-617X
citation:
ama: Akopyan A. 3-Webs generated by confocal conics and circles. Geometriae Dedicata.
2018;194(1):55-64. doi:10.1007/s10711-017-0265-6
apa: Akopyan, A. (2018). 3-Webs generated by confocal conics and circles. Geometriae
Dedicata. Springer. https://doi.org/10.1007/s10711-017-0265-6
chicago: Akopyan, Arseniy. “3-Webs Generated by Confocal Conics and Circles.” Geometriae
Dedicata. Springer, 2018. https://doi.org/10.1007/s10711-017-0265-6.
ieee: A. Akopyan, “3-Webs generated by confocal conics and circles,” Geometriae
Dedicata, vol. 194, no. 1. Springer, pp. 55–64, 2018.
ista: Akopyan A. 2018. 3-Webs generated by confocal conics and circles. Geometriae
Dedicata. 194(1), 55–64.
mla: Akopyan, Arseniy. “3-Webs Generated by Confocal Conics and Circles.” Geometriae
Dedicata, vol. 194, no. 1, Springer, 2018, pp. 55–64, doi:10.1007/s10711-017-0265-6.
short: A. Akopyan, Geometriae Dedicata 194 (2018) 55–64.
date_created: 2018-12-11T11:47:57Z
date_published: 2018-06-01T00:00:00Z
date_updated: 2023-09-08T11:40:29Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s10711-017-0265-6
ec_funded: 1
external_id:
isi:
- '000431418800004'
file:
- access_level: open_access
checksum: 1febcfc1266486053a069e3425ea3713
content_type: application/pdf
creator: kschuh
date_created: 2020-01-03T11:35:08Z
date_updated: 2020-07-14T12:47:44Z
file_id: '7222'
file_name: 2018_Springer_Akopyan.pdf
file_size: 1140860
relation: main_file
file_date_updated: 2020-07-14T12:47:44Z
has_accepted_license: '1'
intvolume: ' 194'
isi: 1
issue: '1'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 55 - 64
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
publication: Geometriae Dedicata
publication_status: published
publisher: Springer
publist_id: '7014'
quality_controlled: '1'
scopus_import: '1'
status: public
title: 3-Webs generated by confocal conics and circles
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 194
year: '2018'
...
---
_id: '77'
abstract:
- lang: eng
text: Holes confined in quantum dots have gained considerable interest in the past
few years due to their potential as spin qubits. Here we demonstrate two-axis
control of a spin 3/2 qubit in natural Ge. The qubit is formed in a hut wire double
quantum dot device. The Pauli spin blockade principle allowed us to demonstrate
electric dipole spin resonance by applying a radio frequency electric field to
one of the electrodes defining the double quantum dot. Coherent hole spin oscillations
with Rabi frequencies reaching 140 MHz are demonstrated and dephasing times of
130 ns are measured. The reported results emphasize the potential of Ge as a platform
for fast and electrically tunable hole spin qubit devices.
acknowledged_ssus:
- _id: M-Shop
- _id: NanoFab
article_processing_charge: Yes
article_type: original
author:
- first_name: Hannes
full_name: Watzinger, Hannes
id: 35DF8E50-F248-11E8-B48F-1D18A9856A87
last_name: Watzinger
- first_name: Josip
full_name: Kukucka, Josip
id: 3F5D8856-F248-11E8-B48F-1D18A9856A87
last_name: Kukucka
- first_name: Lada
full_name: Vukusic, Lada
id: 31E9F056-F248-11E8-B48F-1D18A9856A87
last_name: Vukusic
orcid: 0000-0003-2424-8636
- first_name: Fei
full_name: Gao, Fei
last_name: Gao
- first_name: Ting
full_name: Wang, Ting
last_name: Wang
- first_name: Friedrich
full_name: Schäffler, Friedrich
last_name: Schäffler
- first_name: Jian
full_name: Zhang, Jian
last_name: Zhang
- first_name: Georgios
full_name: Katsaros, Georgios
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
orcid: 0000-0001-8342-202X
citation:
ama: Watzinger H, Kukucka J, Vukušić L, et al. A germanium hole spin qubit. Nature
Communications. 2018;9(3902). doi:10.1038/s41467-018-06418-4
apa: Watzinger, H., Kukucka, J., Vukušić, L., Gao, F., Wang, T., Schäffler, F.,
… Katsaros, G. (2018). A germanium hole spin qubit. Nature Communications.
Nature Publishing Group. https://doi.org/10.1038/s41467-018-06418-4
chicago: Watzinger, Hannes, Josip Kukucka, Lada Vukušić, Fei Gao, Ting Wang, Friedrich
Schäffler, Jian Zhang, and Georgios Katsaros. “A Germanium Hole Spin Qubit.” Nature
Communications. Nature Publishing Group, 2018. https://doi.org/10.1038/s41467-018-06418-4.
ieee: H. Watzinger et al., “A germanium hole spin qubit,” Nature Communications,
vol. 9, no. 3902. Nature Publishing Group, 2018.
ista: Watzinger H, Kukucka J, Vukušić L, Gao F, Wang T, Schäffler F, Zhang J, Katsaros
G. 2018. A germanium hole spin qubit. Nature Communications. 9(3902).
mla: Watzinger, Hannes, et al. “A Germanium Hole Spin Qubit.” Nature Communications,
vol. 9, no. 3902, Nature Publishing Group, 2018, doi:10.1038/s41467-018-06418-4.
short: H. Watzinger, J. Kukucka, L. Vukušić, F. Gao, T. Wang, F. Schäffler, J. Zhang,
G. Katsaros, Nature Communications 9 (2018).
date_created: 2018-12-11T11:44:30Z
date_published: 2018-09-25T00:00:00Z
date_updated: 2023-09-08T11:44:02Z
day: '25'
ddc:
- '530'
department:
- _id: GeKa
doi: 10.1038/s41467-018-06418-4
ec_funded: 1
external_id:
isi:
- '000445560800010'
file:
- access_level: open_access
checksum: e7148c10a64497e279c4de570b6cc544
content_type: application/pdf
creator: dernst
date_created: 2018-12-17T10:28:30Z
date_updated: 2020-07-14T12:48:02Z
file_id: '5687'
file_name: 2018_NatureComm_Watzinger.pdf
file_size: 1063469
relation: main_file
file_date_updated: 2020-07-14T12:48:02Z
has_accepted_license: '1'
intvolume: ' 9'
isi: 1
issue: '3902 '
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 25517E86-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '335497'
name: Towards Spin qubits and Majorana fermions in Germanium selfassembled hut-wires
- _id: 2552F888-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Y00715
name: Loch Spin-Qubits und Majorana-Fermionen in Germanium
publication: Nature Communications
publication_status: published
publisher: Nature Publishing Group
quality_controlled: '1'
related_material:
record:
- id: '7977'
relation: popular_science
- id: '7996'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: A germanium hole spin qubit
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 9
year: '2018'
...
---
_id: '401'
abstract:
- lang: eng
text: The actomyosin cytoskeleton, a key stress-producing unit in epithelial cells,
oscillates spontaneously in a wide variety of systems. Although much of the signal
cascade regulating myosin activity has been characterized, the origin of such
oscillatory behavior is still unclear. Here, we show that basal myosin II oscillation
in Drosophila ovarian epithelium is not controlled by actomyosin cortical tension,
but instead relies on a biochemical oscillator involving ROCK and myosin phosphatase.
Key to this oscillation is a diffusive ROCK flow, linking junctional Rho1 to medial
actomyosin cortex, and dynamically maintained by a self-activation loop reliant
on ROCK kinase activity. In response to the resulting myosin II recruitment, myosin
phosphatase is locally enriched and shuts off ROCK and myosin II signals. Coupling
Drosophila genetics, live imaging, modeling, and optogenetics, we uncover an intrinsic
biochemical oscillator at the core of myosin II regulatory network, shedding light
on the spatio-temporal dynamics of force generation.
article_number: '1210'
article_processing_charge: No
author:
- first_name: Xiang
full_name: Qin, Xiang
last_name: Qin
- first_name: Edouard B
full_name: Hannezo, Edouard B
id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
last_name: Hannezo
orcid: 0000-0001-6005-1561
- first_name: Thomas
full_name: Mangeat, Thomas
last_name: Mangeat
- first_name: Chang
full_name: Liu, Chang
last_name: Liu
- first_name: Pralay
full_name: Majumder, Pralay
last_name: Majumder
- first_name: Jjiaying
full_name: Liu, Jjiaying
last_name: Liu
- first_name: Valerie
full_name: Choesmel Cadamuro, Valerie
last_name: Choesmel Cadamuro
- first_name: Jocelyn
full_name: Mcdonald, Jocelyn
last_name: Mcdonald
- first_name: Yinyao
full_name: Liu, Yinyao
last_name: Liu
- first_name: Bin
full_name: Yi, Bin
last_name: Yi
- first_name: Xiaobo
full_name: Wang, Xiaobo
last_name: Wang
citation:
ama: Qin X, Hannezo EB, Mangeat T, et al. A biochemical network controlling basal
myosin oscillation. Nature Communications. 2018;9(1). doi:10.1038/s41467-018-03574-5
apa: Qin, X., Hannezo, E. B., Mangeat, T., Liu, C., Majumder, P., Liu, J., … Wang,
X. (2018). A biochemical network controlling basal myosin oscillation. Nature
Communications. Nature Publishing Group. https://doi.org/10.1038/s41467-018-03574-5
chicago: Qin, Xiang, Edouard B Hannezo, Thomas Mangeat, Chang Liu, Pralay Majumder,
Jjiaying Liu, Valerie Choesmel Cadamuro, et al. “A Biochemical Network Controlling
Basal Myosin Oscillation.” Nature Communications. Nature Publishing Group,
2018. https://doi.org/10.1038/s41467-018-03574-5.
ieee: X. Qin et al., “A biochemical network controlling basal myosin oscillation,”
Nature Communications, vol. 9, no. 1. Nature Publishing Group, 2018.
ista: Qin X, Hannezo EB, Mangeat T, Liu C, Majumder P, Liu J, Choesmel Cadamuro
V, Mcdonald J, Liu Y, Yi B, Wang X. 2018. A biochemical network controlling basal
myosin oscillation. Nature Communications. 9(1), 1210.
mla: Qin, Xiang, et al. “A Biochemical Network Controlling Basal Myosin Oscillation.”
Nature Communications, vol. 9, no. 1, 1210, Nature Publishing Group, 2018,
doi:10.1038/s41467-018-03574-5.
short: X. Qin, E.B. Hannezo, T. Mangeat, C. Liu, P. Majumder, J. Liu, V. Choesmel
Cadamuro, J. Mcdonald, Y. Liu, B. Yi, X. Wang, Nature Communications 9 (2018).
date_created: 2018-12-11T11:46:16Z
date_published: 2018-03-23T00:00:00Z
date_updated: 2023-09-08T11:41:45Z
day: '23'
ddc:
- '539'
- '570'
department:
- _id: EdHa
doi: 10.1038/s41467-018-03574-5
external_id:
isi:
- '000428165400009'
file:
- access_level: open_access
checksum: 87a427bc2e8724be3dd22a4efdd21a33
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:11:45Z
date_updated: 2020-07-14T12:46:22Z
file_id: '4902'
file_name: IST-2018-996-v1+1_2018_Hannezo_A-biochemical.pdf
file_size: 3780491
relation: main_file
file_date_updated: 2020-07-14T12:46:22Z
has_accepted_license: '1'
intvolume: ' 9'
isi: 1
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_status: published
publisher: Nature Publishing Group
publist_id: '7427'
pubrep_id: '996'
quality_controlled: '1'
scopus_import: '1'
status: public
title: A biochemical network controlling basal myosin oscillation
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 9
year: '2018'
...
---
_id: '318'
abstract:
- lang: eng
text: The insect’s fat body combines metabolic and immunological functions. In this
issue of Developmental Cell, Franz et al. (2018) show that in Drosophila, cells
of the fat body are not static, but can actively “swim” toward sites of epithelial
injury, where they physically clog the wound and locally secrete antimicrobial
peptides.
acknowledgement: Short Survey
article_processing_charge: No
author:
- first_name: Alessandra M
full_name: Casano, Alessandra M
id: 3DBA3F4E-F248-11E8-B48F-1D18A9856A87
last_name: Casano
orcid: 0000-0002-6009-6804
- first_name: Michael K
full_name: Sixt, Michael K
id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
last_name: Sixt
orcid: 0000-0002-6620-9179
citation:
ama: Casano AM, Sixt MK. A fat lot of good for wound healing. Developmental Cell.
2018;44(4):405-406. doi:10.1016/j.devcel.2018.02.009
apa: Casano, A. M., & Sixt, M. K. (2018). A fat lot of good for wound healing.
Developmental Cell. Cell Press. https://doi.org/10.1016/j.devcel.2018.02.009
chicago: Casano, Alessandra M, and Michael K Sixt. “A Fat Lot of Good for Wound
Healing.” Developmental Cell. Cell Press, 2018. https://doi.org/10.1016/j.devcel.2018.02.009.
ieee: A. M. Casano and M. K. Sixt, “A fat lot of good for wound healing,” Developmental
Cell, vol. 44, no. 4. Cell Press, pp. 405–406, 2018.
ista: Casano AM, Sixt MK. 2018. A fat lot of good for wound healing. Developmental
Cell. 44(4), 405–406.
mla: Casano, Alessandra M., and Michael K. Sixt. “A Fat Lot of Good for Wound Healing.”
Developmental Cell, vol. 44, no. 4, Cell Press, 2018, pp. 405–06, doi:10.1016/j.devcel.2018.02.009.
short: A.M. Casano, M.K. Sixt, Developmental Cell 44 (2018) 405–406.
date_created: 2018-12-11T11:45:47Z
date_published: 2018-02-26T00:00:00Z
date_updated: 2023-09-08T11:42:28Z
day: '26'
department:
- _id: MiSi
doi: 10.1016/j.devcel.2018.02.009
external_id:
isi:
- '000426150700002'
pmid:
- '29486189'
intvolume: ' 44'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pubmed/29486189
month: '02'
oa: 1
oa_version: Published Version
page: 405 - 406
pmid: 1
publication: Developmental Cell
publication_status: published
publisher: Cell Press
publist_id: '7547'
quality_controlled: '1'
scopus_import: '1'
status: public
title: A fat lot of good for wound healing
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 44
year: '2018'
...
---
_id: '410'
abstract:
- lang: eng
text: Lesion verification and quantification is traditionally done via histological
examination of sectioned brains, a time-consuming process that relies heavily
on manual estimation. Such methods are particularly problematic in posterior cortical
regions (e.g. visual cortex), where sectioning leads to significant damage and
distortion of tissue. Even more challenging is the post hoc localization of micro-electrodes,
which relies on the same techniques, suffers from similar drawbacks and requires
even higher precision. Here, we propose a new, simple method for quantitative
lesion characterization and electrode localization that is less labor-intensive
and yields more detailed results than conventional methods. We leverage staining
techniques standard in electron microscopy with the use of commodity micro-CT
imaging. We stain whole rat and zebra finch brains in osmium tetroxide, embed
these in resin and scan entire brains in a micro-CT machine. The scans result
in 3D reconstructions of the brains with section thickness dependent on sample
size (12–15 and 5–6 microns for rat and zebra finch respectively) that can be
segmented manually or automatically. Because the method captures the entire intact
brain volume, comparisons within and across studies are more tractable, and the
extent of lesions and electrodes may be studied with higher accuracy than with
current methods.
article_number: '5184'
article_processing_charge: No
author:
- first_name: Javier
full_name: Masís, Javier
last_name: Masís
- first_name: David
full_name: Mankus, David
last_name: Mankus
- first_name: Steffen
full_name: Wolff, Steffen
last_name: Wolff
- first_name: Grigori
full_name: Guitchounts, Grigori
last_name: Guitchounts
- first_name: Maximilian A
full_name: Jösch, Maximilian A
id: 2BD278E6-F248-11E8-B48F-1D18A9856A87
last_name: Jösch
orcid: 0000-0002-3937-1330
- first_name: David
full_name: Cox, David
last_name: Cox
citation:
ama: Masís J, Mankus D, Wolff S, Guitchounts G, Jösch MA, Cox D. A micro-CT-based
method for quantitative brain lesion characterization and electrode localization.
Scientific Reports. 2018;8(1). doi:10.1038/s41598-018-23247-z
apa: Masís, J., Mankus, D., Wolff, S., Guitchounts, G., Jösch, M. A., & Cox,
D. (2018). A micro-CT-based method for quantitative brain lesion characterization
and electrode localization. Scientific Reports. Nature Publishing Group.
https://doi.org/10.1038/s41598-018-23247-z
chicago: Masís, Javier, David Mankus, Steffen Wolff, Grigori Guitchounts, Maximilian
A Jösch, and David Cox. “A Micro-CT-Based Method for Quantitative Brain Lesion
Characterization and Electrode Localization.” Scientific Reports. Nature
Publishing Group, 2018. https://doi.org/10.1038/s41598-018-23247-z.
ieee: J. Masís, D. Mankus, S. Wolff, G. Guitchounts, M. A. Jösch, and D. Cox, “A
micro-CT-based method for quantitative brain lesion characterization and electrode
localization,” Scientific Reports, vol. 8, no. 1. Nature Publishing Group,
2018.
ista: Masís J, Mankus D, Wolff S, Guitchounts G, Jösch MA, Cox D. 2018. A micro-CT-based
method for quantitative brain lesion characterization and electrode localization.
Scientific Reports. 8(1), 5184.
mla: Masís, Javier, et al. “A Micro-CT-Based Method for Quantitative Brain Lesion
Characterization and Electrode Localization.” Scientific Reports, vol.
8, no. 1, 5184, Nature Publishing Group, 2018, doi:10.1038/s41598-018-23247-z.
short: J. Masís, D. Mankus, S. Wolff, G. Guitchounts, M.A. Jösch, D. Cox, Scientific
Reports 8 (2018).
date_created: 2018-12-11T11:46:19Z
date_published: 2018-03-26T00:00:00Z
date_updated: 2023-09-08T11:48:39Z
day: '26'
ddc:
- '571'
- '572'
department:
- _id: MaJö
doi: 10.1038/s41598-018-23247-z
external_id:
isi:
- '000428234100005'
file:
- access_level: open_access
checksum: 653fcb852f899c75b00ceee2a670d738
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:10:42Z
date_updated: 2020-07-14T12:46:23Z
file_id: '4831'
file_name: IST-2018-994-v1+1_2018_Joesch_A-micro-CT-based.pdf
file_size: 2359430
relation: main_file
file_date_updated: 2020-07-14T12:46:23Z
has_accepted_license: '1'
intvolume: ' 8'
isi: 1
issue: '1'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Scientific Reports
publication_status: published
publisher: Nature Publishing Group
publist_id: '7419'
pubrep_id: '994'
quality_controlled: '1'
scopus_import: '1'
status: public
title: A micro-CT-based method for quantitative brain lesion characterization and
electrode localization
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 8
year: '2018'
...
---
_id: '277'
abstract:
- lang: eng
text: 'Arabidopsis and human ARM protein interact with telomerase. Deregulated mRNA
levels of DNA repair and ribosomal protein genes in an Arabidopsis arm mutant
suggest non-telomeric ARM function. The human homolog ARMC6 interacts with hTRF2.
Abstract: Telomerase maintains telomeres and has proposed non-telomeric functions.
We previously identified interaction of the C-terminal domain of Arabidopsis telomerase
reverse transcriptase (AtTERT) with an armadillo/β-catenin-like repeat (ARM) containing
protein. Here we explore protein–protein interactions of the ARM protein, AtTERT
domains, POT1a, TRF-like family and SMH family proteins, and the chromatin remodeling
protein CHR19 using bimolecular fluorescence complementation (BiFC), yeast two-hybrid
(Y2H) analysis, and co-immunoprecipitation. The ARM protein interacts with both
the N- and C-terminal domains of AtTERT in different cellular compartments. ARM
interacts with CHR19 and TRF-like I family proteins that also bind AtTERT directly
or through interaction with POT1a. The putative human ARM homolog co-precipitates
telomerase activity and interacts with hTRF2 protein in vitro. Analysis of Arabidopsis
arm mutants shows no obvious changes in telomere length or telomerase activity,
suggesting that ARM is not essential for telomere maintenance. The observed interactions
with telomerase and Myb-like domain proteins (TRF-like family I) may therefore
reflect possible non-telomeric functions. Transcript levels of several DNA repair
and ribosomal genes are affected in arm mutants, and ARM, likely in association
with other proteins, suppressed expression of XRCC3 and RPSAA promoter constructs
in luciferase reporter assays. In conclusion, ARM can participate in non-telomeric
functions of telomerase, and can also perform its own telomerase-independent functions.'
article_processing_charge: No
article_type: original
author:
- first_name: Ladislav
full_name: Dokládal, Ladislav
last_name: Dokládal
- first_name: Eva
full_name: Benková, Eva
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
- first_name: David
full_name: Honys, David
last_name: Honys
- first_name: Nikoleta
full_name: Dupláková, Nikoleta
last_name: Dupláková
- first_name: Lan
full_name: Lee, Lan
last_name: Lee
- first_name: Stanton
full_name: Gelvin, Stanton
last_name: Gelvin
- first_name: Eva
full_name: Sýkorová, Eva
last_name: Sýkorová
citation:
ama: Dokládal L, Benková E, Honys D, et al. An armadillo-domain protein participates
in a telomerase interaction network. Plant Molecular Biology. 2018;97(5):407-420.
doi:10.1007/s11103-018-0747-4
apa: Dokládal, L., Benková, E., Honys, D., Dupláková, N., Lee, L., Gelvin, S., &
Sýkorová, E. (2018). An armadillo-domain protein participates in a telomerase
interaction network. Plant Molecular Biology. Springer. https://doi.org/10.1007/s11103-018-0747-4
chicago: Dokládal, Ladislav, Eva Benková, David Honys, Nikoleta Dupláková, Lan Lee,
Stanton Gelvin, and Eva Sýkorová. “An Armadillo-Domain Protein Participates in
a Telomerase Interaction Network.” Plant Molecular Biology. Springer, 2018.
https://doi.org/10.1007/s11103-018-0747-4.
ieee: L. Dokládal et al., “An armadillo-domain protein participates in a
telomerase interaction network,” Plant Molecular Biology, vol. 97, no.
5. Springer, pp. 407–420, 2018.
ista: Dokládal L, Benková E, Honys D, Dupláková N, Lee L, Gelvin S, Sýkorová E.
2018. An armadillo-domain protein participates in a telomerase interaction network.
Plant Molecular Biology. 97(5), 407–420.
mla: Dokládal, Ladislav, et al. “An Armadillo-Domain Protein Participates in a Telomerase
Interaction Network.” Plant Molecular Biology, vol. 97, no. 5, Springer,
2018, pp. 407–20, doi:10.1007/s11103-018-0747-4.
short: L. Dokládal, E. Benková, D. Honys, N. Dupláková, L. Lee, S. Gelvin, E. Sýkorová,
Plant Molecular Biology 97 (2018) 407–420.
date_created: 2018-12-11T11:45:34Z
date_published: 2018-06-12T00:00:00Z
date_updated: 2023-09-08T13:21:05Z
day: '12'
ddc:
- '580'
department:
- _id: EvBe
doi: 10.1007/s11103-018-0747-4
external_id:
isi:
- '000438981700009'
file:
- access_level: open_access
checksum: 451ae47616e6af2533099f596b2a47fb
content_type: application/pdf
creator: dernst
date_created: 2020-05-14T12:23:08Z
date_updated: 2020-07-14T12:45:45Z
file_id: '7834'
file_name: 2018_PlantMolecBio_Dokladal.pdf
file_size: 1150679
relation: main_file
file_date_updated: 2020-07-14T12:45:45Z
has_accepted_license: '1'
intvolume: ' 97'
isi: 1
issue: '5'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Submitted Version
page: 407 - 420
publication: Plant Molecular Biology
publication_status: published
publisher: Springer
publist_id: '7625'
quality_controlled: '1'
scopus_import: '1'
status: public
title: An armadillo-domain protein participates in a telomerase interaction network
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 97
year: '2018'
...
---
_id: '299'
abstract:
- lang: eng
text: We introduce in this paper AMT 2.0 , a tool for qualitative and quantitative
analysis of hybrid continuous and Boolean signals that combine numerical values
and discrete events. The evaluation of the signals is based on rich temporal specifications
expressed in extended Signal Temporal Logic (xSTL), which integrates Timed Regular
Expressions (TRE) within Signal Temporal Logic (STL). The tool features qualitative
monitoring (property satisfaction checking), trace diagnostics for explaining
and justifying property violations and specification-driven measurement of quantitative
features of the signal.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Dejan
full_name: Nickovic, Dejan
id: 41BCEE5C-F248-11E8-B48F-1D18A9856A87
last_name: Nickovic
- first_name: Olivier
full_name: Lebeltel, Olivier
last_name: Lebeltel
- first_name: Oded
full_name: Maler, Oded
last_name: Maler
- first_name: Thomas
full_name: Ferrere, Thomas
id: 40960E6E-F248-11E8-B48F-1D18A9856A87
last_name: Ferrere
orcid: 0000-0001-5199-3143
- first_name: Dogan
full_name: Ulus, Dogan
last_name: Ulus
citation:
ama: 'Nickovic D, Lebeltel O, Maler O, Ferrere T, Ulus D. AMT 2.0: Qualitative and
quantitative trace analysis with extended signal temporal logic. In: Beyer D,
Huisman M, eds. Vol 10806. Springer; 2018:303-319. doi:10.1007/978-3-319-89963-3_18'
apa: 'Nickovic, D., Lebeltel, O., Maler, O., Ferrere, T., & Ulus, D. (2018).
AMT 2.0: Qualitative and quantitative trace analysis with extended signal temporal
logic. In D. Beyer & M. Huisman (Eds.) (Vol. 10806, pp. 303–319). Presented
at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems,
Thessaloniki, Greece: Springer. https://doi.org/10.1007/978-3-319-89963-3_18'
chicago: 'Nickovic, Dejan, Olivier Lebeltel, Oded Maler, Thomas Ferrere, and Dogan
Ulus. “AMT 2.0: Qualitative and Quantitative Trace Analysis with Extended Signal
Temporal Logic.” edited by Dirk Beyer and Marieke Huisman, 10806:303–19. Springer,
2018. https://doi.org/10.1007/978-3-319-89963-3_18.'
ieee: 'D. Nickovic, O. Lebeltel, O. Maler, T. Ferrere, and D. Ulus, “AMT 2.0: Qualitative
and quantitative trace analysis with extended signal temporal logic,” presented
at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems,
Thessaloniki, Greece, 2018, vol. 10806, pp. 303–319.'
ista: 'Nickovic D, Lebeltel O, Maler O, Ferrere T, Ulus D. 2018. AMT 2.0: Qualitative
and quantitative trace analysis with extended signal temporal logic. TACAS: Tools
and Algorithms for the Construction and Analysis of Systems, LNCS, vol. 10806,
303–319.'
mla: 'Nickovic, Dejan, et al. AMT 2.0: Qualitative and Quantitative Trace Analysis
with Extended Signal Temporal Logic. Edited by Dirk Beyer and Marieke Huisman,
vol. 10806, Springer, 2018, pp. 303–19, doi:10.1007/978-3-319-89963-3_18.'
short: D. Nickovic, O. Lebeltel, O. Maler, T. Ferrere, D. Ulus, in:, D. Beyer, M.
Huisman (Eds.), Springer, 2018, pp. 303–319.
conference:
end_date: 2018-04-20
location: Thessaloniki, Greece
name: 'TACAS: Tools and Algorithms for the Construction and Analysis of Systems'
start_date: 2018-04-14
date_created: 2018-12-11T11:45:41Z
date_published: 2018-04-14T00:00:00Z
date_updated: 2023-09-08T11:52:02Z
day: '14'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1007/978-3-319-89963-3_18
editor:
- first_name: Dirk
full_name: Beyer, Dirk
last_name: Beyer
- first_name: Marieke
full_name: Huisman, Marieke
last_name: Huisman
external_id:
isi:
- '00445822600018'
file:
- access_level: open_access
checksum: e11db3b9c8e27a1c7d1c738cc5e4d25a
content_type: application/pdf
creator: dernst
date_created: 2019-02-06T07:33:05Z
date_updated: 2020-07-14T12:45:58Z
file_id: '5928'
file_name: 2018_LNCS_Nickovic.pdf
file_size: 3267209
relation: main_file
file_date_updated: 2020-07-14T12:45:58Z
has_accepted_license: '1'
intvolume: ' 10806'
isi: 1
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 303 - 319
publication_status: published
publisher: Springer
publist_id: '7582'
quality_controlled: '1'
related_material:
record:
- id: '10861'
relation: later_version
status: public
scopus_import: '1'
status: public
title: 'AMT 2.0: Qualitative and quantitative trace analysis with extended signal
temporal logic'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 10806
year: '2018'
...
---
_id: '413'
abstract:
- lang: eng
text: Being cared for when sick is a benefit of sociality that can reduce disease
and improve survival of group members. However, individuals providing care risk
contracting infectious diseases themselves. If they contract a low pathogen dose,
they may develop low-level infections that do not cause disease but still affect
host immunity by either decreasing or increasing the host’s vulnerability to subsequent
infections. Caring for contagious individuals can thus significantly alter the
future disease susceptibility of caregivers. Using ants and their fungal pathogens
as a model system, we tested if the altered disease susceptibility of experienced
caregivers, in turn, affects their expression of sanitary care behavior. We found
that low-level infections contracted during sanitary care had protective or neutral
effects on secondary exposure to the same (homologous) pathogen but consistently
caused high mortality on superinfection with a different (heterologous) pathogen.
In response to this risk, the ants selectively adjusted the expression of their
sanitary care. Specifically, the ants performed less grooming and more antimicrobial
disinfection when caring for nestmates contaminated with heterologous pathogens
compared with homologous ones. By modulating the components of sanitary care in
this way the ants acquired less infectious particles of the heterologous pathogens,
resulting in reduced superinfection. The performance of risk-adjusted sanitary
care reveals the remarkable capacity of ants to react to changes in their disease
susceptibility, according to their own infection history and to flexibly adjust
collective care to individual risk.
article_processing_charge: No
author:
- first_name: Matthias
full_name: Konrad, Matthias
id: 46528076-F248-11E8-B48F-1D18A9856A87
last_name: Konrad
- first_name: Christopher
full_name: Pull, Christopher
id: 3C7F4840-F248-11E8-B48F-1D18A9856A87
last_name: Pull
orcid: 0000-0003-1122-3982
- first_name: Sina
full_name: Metzler, Sina
id: 48204546-F248-11E8-B48F-1D18A9856A87
last_name: Metzler
orcid: 0000-0002-9547-2494
- first_name: Katharina
full_name: Seif, Katharina
id: 90F7894A-02CF-11E9-976E-E38CFE5CBC1D
last_name: Seif
- first_name: Elisabeth
full_name: Naderlinger, Elisabeth
id: 31757262-F248-11E8-B48F-1D18A9856A87
last_name: Naderlinger
- first_name: Anna V
full_name: Grasse, Anna V
id: 406F989C-F248-11E8-B48F-1D18A9856A87
last_name: Grasse
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
citation:
ama: Konrad M, Pull C, Metzler S, et al. Ants avoid superinfections by performing
risk-adjusted sanitary care. PNAS. 2018;115(11):2782-2787. doi:10.1073/pnas.1713501115
apa: Konrad, M., Pull, C., Metzler, S., Seif, K., Naderlinger, E., Grasse, A. V.,
& Cremer, S. (2018). Ants avoid superinfections by performing risk-adjusted
sanitary care. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.1713501115
chicago: Konrad, Matthias, Christopher Pull, Sina Metzler, Katharina Seif, Elisabeth
Naderlinger, Anna V Grasse, and Sylvia Cremer. “Ants Avoid Superinfections by
Performing Risk-Adjusted Sanitary Care.” PNAS. National Academy of Sciences,
2018. https://doi.org/10.1073/pnas.1713501115.
ieee: M. Konrad et al., “Ants avoid superinfections by performing risk-adjusted
sanitary care,” PNAS, vol. 115, no. 11. National Academy of Sciences, pp.
2782–2787, 2018.
ista: Konrad M, Pull C, Metzler S, Seif K, Naderlinger E, Grasse AV, Cremer S. 2018.
Ants avoid superinfections by performing risk-adjusted sanitary care. PNAS. 115(11),
2782–2787.
mla: Konrad, Matthias, et al. “Ants Avoid Superinfections by Performing Risk-Adjusted
Sanitary Care.” PNAS, vol. 115, no. 11, National Academy of Sciences, 2018,
pp. 2782–87, doi:10.1073/pnas.1713501115.
short: M. Konrad, C. Pull, S. Metzler, K. Seif, E. Naderlinger, A.V. Grasse, S.
Cremer, PNAS 115 (2018) 2782–2787.
date_created: 2018-12-11T11:46:20Z
date_published: 2018-03-13T00:00:00Z
date_updated: 2023-09-08T13:22:21Z
day: '13'
department:
- _id: SyCr
doi: 10.1073/pnas.1713501115
ec_funded: 1
external_id:
isi:
- '000427245400069'
pmid:
- '29463746'
intvolume: ' 115'
isi: 1
issue: '11'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pubmed/29463746
month: '03'
oa: 1
oa_version: Published Version
page: 2782 - 2787
pmid: 1
project:
- _id: 25DC711C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '243071'
name: 'Social Vaccination in Ant Colonies: from Individual Mechanisms to Society
Effects'
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '7416'
quality_controlled: '1'
related_material:
link:
- description: News on IST Homepage
relation: press_release
url: https://ist.ac.at/en/news/helping-in-spite-of-risk-ants-perform-risk-averse-sanitary-care-of-infectious-nest-mates/
scopus_import: '1'
status: public
title: Ants avoid superinfections by performing risk-adjusted sanitary care
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 115
year: '2018'
...
---
_id: '195'
abstract:
- lang: eng
text: We demonstrate that identical impurities immersed in a two-dimensional many-particle
bath can be viewed as flux-tube-charged-particle composites described by fractional
statistics. In particular, we find that the bath manifests itself as an external
magnetic flux tube with respect to the impurities, and hence the time-reversal
symmetry is broken for the effective Hamiltonian describing the impurities. The
emerging flux tube acts as a statistical gauge field after a certain critical
coupling. This critical coupling corresponds to the intersection point between
the quasiparticle state and the phonon wing, where the angular momentum is transferred
from the impurity to the bath. This amounts to a novel configuration with emerging
anyons. The proposed setup paves the way to realizing anyons using electrons interacting
with superfluid helium or lattice phonons, as well as using atomic impurities
in ultracold gases.
article_number: '045402'
article_processing_charge: No
author:
- first_name: Enderalp
full_name: Yakaboylu, Enderalp
id: 38CB71F6-F248-11E8-B48F-1D18A9856A87
last_name: Yakaboylu
orcid: 0000-0001-5973-0874
- first_name: Mikhail
full_name: Lemeshko, Mikhail
id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
last_name: Lemeshko
orcid: 0000-0002-6990-7802
citation:
ama: Yakaboylu E, Lemeshko M. Anyonic statistics of quantum impurities in two dimensions.
Physical Review B - Condensed Matter and Materials Physics. 2018;98(4).
doi:10.1103/PhysRevB.98.045402
apa: Yakaboylu, E., & Lemeshko, M. (2018). Anyonic statistics of quantum impurities
in two dimensions. Physical Review B - Condensed Matter and Materials Physics.
American Physical Society. https://doi.org/10.1103/PhysRevB.98.045402
chicago: Yakaboylu, Enderalp, and Mikhail Lemeshko. “Anyonic Statistics of Quantum
Impurities in Two Dimensions.” Physical Review B - Condensed Matter and Materials
Physics. American Physical Society, 2018. https://doi.org/10.1103/PhysRevB.98.045402.
ieee: E. Yakaboylu and M. Lemeshko, “Anyonic statistics of quantum impurities in
two dimensions,” Physical Review B - Condensed Matter and Materials Physics,
vol. 98, no. 4. American Physical Society, 2018.
ista: Yakaboylu E, Lemeshko M. 2018. Anyonic statistics of quantum impurities in
two dimensions. Physical Review B - Condensed Matter and Materials Physics. 98(4),
045402.
mla: Yakaboylu, Enderalp, and Mikhail Lemeshko. “Anyonic Statistics of Quantum Impurities
in Two Dimensions.” Physical Review B - Condensed Matter and Materials Physics,
vol. 98, no. 4, 045402, American Physical Society, 2018, doi:10.1103/PhysRevB.98.045402.
short: E. Yakaboylu, M. Lemeshko, Physical Review B - Condensed Matter and Materials
Physics 98 (2018).
date_created: 2018-12-11T11:45:08Z
date_published: 2018-07-15T00:00:00Z
date_updated: 2023-09-08T13:22:57Z
day: '15'
department:
- _id: MiLe
doi: 10.1103/PhysRevB.98.045402
ec_funded: 1
external_id:
arxiv:
- '1712.00308'
isi:
- '000436939100007'
intvolume: ' 98'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1712.00308
month: '07'
oa: 1
oa_version: Submitted Version
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
- _id: 26031614-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P29902
name: Quantum rotations in the presence of a many-body environment
publication: Physical Review B - Condensed Matter and Materials Physics
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Anyonic statistics of quantum impurities in two dimensions
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 98
year: '2018'
...
---
_id: '203'
abstract:
- lang: eng
text: Asymmetric auxin distribution is instrumental for the differential growth
that causes organ bending on tropic stimuli and curvatures during plant development.
Local differences in auxin concentrations are achieved mainly by polarized cellular
distribution of PIN auxin transporters, but whether other mechanisms involving
auxin homeostasis are also relevant for the formation of auxin gradients is not
clear. Here we show that auxin methylation is required for asymmetric auxin distribution
across the hypocotyl, particularly during its response to gravity. We found that
loss-of-function mutants in Arabidopsis IAA CARBOXYL METHYLTRANSFERASE1 (IAMT1)
prematurely unfold the apical hook, and that their hypocotyls are impaired in
gravitropic reorientation. This defect is linked to an auxin-dependent increase
in PIN gene expression, leading to an increased polar auxin transport and lack
of asymmetric distribution of PIN3 in the iamt1 mutant. Gravitropic reorientation
in the iamt1 mutant could be restored with either endodermis-specific expression
of IAMT1 or partial inhibition of polar auxin transport, which also results in
normal PIN gene expression levels. We propose that IAA methylation is necessary
in gravity-sensing cells to restrict polar auxin transport within the range of
auxin levels that allow for differential responses.
article_processing_charge: No
author:
- first_name: Mohamad
full_name: Abbas, Mohamad
id: 47E8FC1C-F248-11E8-B48F-1D18A9856A87
last_name: Abbas
- first_name: García J
full_name: Hernández, García J
last_name: Hernández
- first_name: Stephan
full_name: Pollmann, Stephan
last_name: Pollmann
- first_name: Sophia L
full_name: Samodelov, Sophia L
last_name: Samodelov
- first_name: Martina
full_name: Kolb, Martina
last_name: Kolb
- first_name: Jirí
full_name: Friml, Jirí
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Ulrich Z
full_name: Hammes, Ulrich Z
last_name: Hammes
- first_name: Matias D
full_name: Zurbriggen, Matias D
last_name: Zurbriggen
- first_name: Miguel
full_name: Blázquez, Miguel
last_name: Blázquez
- first_name: David
full_name: Alabadí, David
last_name: Alabadí
citation:
ama: Abbas M, Hernández GJ, Pollmann S, et al. Auxin methylation is required for
differential growth in Arabidopsis. PNAS. 2018;115(26):6864-6869. doi:10.1073/pnas.1806565115
apa: Abbas, M., Hernández, G. J., Pollmann, S., Samodelov, S. L., Kolb, M., Friml,
J., … Alabadí, D. (2018). Auxin methylation is required for differential growth
in Arabidopsis. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.1806565115
chicago: Abbas, Mohamad, García J Hernández, Stephan Pollmann, Sophia L Samodelov,
Martina Kolb, Jiří Friml, Ulrich Z Hammes, Matias D Zurbriggen, Miguel Blázquez,
and David Alabadí. “Auxin Methylation Is Required for Differential Growth in Arabidopsis.”
PNAS. National Academy of Sciences, 2018. https://doi.org/10.1073/pnas.1806565115.
ieee: M. Abbas et al., “Auxin methylation is required for differential growth
in Arabidopsis,” PNAS, vol. 115, no. 26. National Academy of Sciences,
pp. 6864–6869, 2018.
ista: Abbas M, Hernández GJ, Pollmann S, Samodelov SL, Kolb M, Friml J, Hammes UZ,
Zurbriggen MD, Blázquez M, Alabadí D. 2018. Auxin methylation is required for
differential growth in Arabidopsis. PNAS. 115(26), 6864–6869.
mla: Abbas, Mohamad, et al. “Auxin Methylation Is Required for Differential Growth
in Arabidopsis.” PNAS, vol. 115, no. 26, National Academy of Sciences,
2018, pp. 6864–69, doi:10.1073/pnas.1806565115.
short: M. Abbas, G.J. Hernández, S. Pollmann, S.L. Samodelov, M. Kolb, J. Friml,
U.Z. Hammes, M.D. Zurbriggen, M. Blázquez, D. Alabadí, PNAS 115 (2018) 6864–6869.
date_created: 2018-12-11T11:45:11Z
date_published: 2018-06-26T00:00:00Z
date_updated: 2023-09-08T13:24:40Z
day: '26'
department:
- _id: JiFr
doi: 10.1073/pnas.1806565115
ec_funded: 1
external_id:
isi:
- '000436245000096'
intvolume: ' 115'
isi: 1
issue: '26'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://eprints.nottingham.ac.uk/52388/
month: '06'
oa: 1
oa_version: None
page: 6864-6869
project:
- _id: 25716A02-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '282300'
name: Polarity and subcellular dynamics in plants
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '7710'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Auxin methylation is required for differential growth in Arabidopsis
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 115
year: '2018'
...
---
_id: '399'
abstract:
- lang: eng
text: Following an earlier calculation in 3D, we calculate the 2D critical temperature
of a dilute, translation-invariant Bose gas using a variational formulation of
the Bogoliubov approximation introduced by Critchley and Solomon in 1976. This
provides the first analytical calculation of the Kosterlitz-Thouless transition
temperature that includes the constant in the logarithm.
acknowledgement: We thank Robert Seiringer and Daniel Ueltschi for bringing the issue
of the change in critical temperature to our attention. We also thank the Erwin
Schrödinger Institute (all authors) and the Department of Mathematics, University
of Copenhagen (MN) for the hospitality during the period this work was carried out.
We gratefully acknowledge the financial support by the European Unions Seventh Framework
Programme under the ERC Grant Agreement Nos. 321029 (JPS and RR) and 337603 (RR)
as well as support by the VIL-LUM FONDEN via the QMATH Centre of Excellence (Grant
No. 10059) (JPS and RR), by the National Science Center (NCN) under grant No. 2016/21/D/ST1/02430
and the Austrian Science Fund (FWF) through project No. P 27533-N27 (MN).
article_number: '10007'
article_processing_charge: No
article_type: original
author:
- first_name: Marcin M
full_name: Napiórkowski, Marcin M
id: 4197AD04-F248-11E8-B48F-1D18A9856A87
last_name: Napiórkowski
- first_name: Robin
full_name: Reuvers, Robin
last_name: Reuvers
- first_name: Jan
full_name: Solovej, Jan
last_name: Solovej
citation:
ama: Napiórkowski MM, Reuvers R, Solovej J. Calculation of the critical temperature
of a dilute Bose gas in the Bogoliubov approximation. EPL. 2018;121(1).
doi:10.1209/0295-5075/121/10007
apa: Napiórkowski, M. M., Reuvers, R., & Solovej, J. (2018). Calculation of
the critical temperature of a dilute Bose gas in the Bogoliubov approximation.
EPL. IOP Publishing Ltd. https://doi.org/10.1209/0295-5075/121/10007
chicago: Napiórkowski, Marcin M, Robin Reuvers, and Jan Solovej. “Calculation of
the Critical Temperature of a Dilute Bose Gas in the Bogoliubov Approximation.”
EPL. IOP Publishing Ltd., 2018. https://doi.org/10.1209/0295-5075/121/10007.
ieee: M. M. Napiórkowski, R. Reuvers, and J. Solovej, “Calculation of the critical
temperature of a dilute Bose gas in the Bogoliubov approximation,” EPL,
vol. 121, no. 1. IOP Publishing Ltd., 2018.
ista: Napiórkowski MM, Reuvers R, Solovej J. 2018. Calculation of the critical temperature
of a dilute Bose gas in the Bogoliubov approximation. EPL. 121(1), 10007.
mla: Napiórkowski, Marcin M., et al. “Calculation of the Critical Temperature of
a Dilute Bose Gas in the Bogoliubov Approximation.” EPL, vol. 121, no.
1, 10007, IOP Publishing Ltd., 2018, doi:10.1209/0295-5075/121/10007.
short: M.M. Napiórkowski, R. Reuvers, J. Solovej, EPL 121 (2018).
date_created: 2018-12-11T11:46:15Z
date_published: 2018-01-01T00:00:00Z
date_updated: 2023-09-08T13:30:51Z
day: '01'
department:
- _id: RoSe
doi: 10.1209/0295-5075/121/10007
external_id:
arxiv:
- '1706.01822'
isi:
- '000460003000003'
intvolume: ' 121'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1706.01822
month: '01'
oa: 1
oa_version: Preprint
project:
- _id: 25C878CE-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P27533_N27
name: Structure of the Excitation Spectrum for Many-Body Quantum Systems
publication: EPL
publication_status: published
publisher: IOP Publishing Ltd.
publist_id: '7432'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Calculation of the critical temperature of a dilute Bose gas in the Bogoliubov
approximation
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 121
year: '2018'
...
---
_id: '5830'
abstract:
- lang: eng
text: CLE peptides have been implicated in various developmental processes of plants
and mediate their responses to environmental stimuli. However, the biological
relevance of most CLE genes remains to be functionally characterized. Here, we
report that CLE9, which is expressed in stomata, acts as an essential regulator
in the induction of stomatal closure. Exogenous application of CLE9 peptides or
overexpression of CLE9 effectively led to stomatal closure and enhanced drought
tolerance, whereas CLE9 loss-of-function mutants were sensitivity to drought stress.
CLE9-induced stomatal closure was impaired in abscisic acid (ABA)-deficient mutants,
indicating that ABA is required for CLE9-medaited guard cell signalling. We further
deciphered that two guard cell ABA-signalling components, OST1 and SLAC1, were
responsible for CLE9-induced stomatal closure. MPK3 and MPK6 were activated by
the CLE9 peptide, and CLE9 peptides failed to close stomata in mpk3 and mpk6 mutants.
In addition, CLE9 peptides stimulated the induction of hydrogen peroxide (H2O2)
and nitric oxide (NO) synthesis associated with stomatal closure, which was abolished
in the NADPH oxidase-deficient mutants or nitric reductase mutants, respectively.
Collectively, our results reveal a novel ABA-dependent function of CLE9 in the
regulation of stomatal apertures, thereby suggesting a potential role of CLE9
in the stress acclimatization of plants.
article_processing_charge: No
author:
- first_name: Luosha
full_name: Zhang, Luosha
last_name: Zhang
- first_name: Xiong
full_name: Shi, Xiong
last_name: Shi
- first_name: Yutao
full_name: Zhang, Yutao
last_name: Zhang
- first_name: Jiajing
full_name: Wang, Jiajing
last_name: Wang
- first_name: Jingwei
full_name: Yang, Jingwei
last_name: Yang
- first_name: Takashi
full_name: Ishida, Takashi
last_name: Ishida
- first_name: Wenqian
full_name: Jiang, Wenqian
last_name: Jiang
- first_name: Xiangyu
full_name: Han, Xiangyu
last_name: Han
- first_name: Jingke
full_name: Kang, Jingke
last_name: Kang
- first_name: Xuening
full_name: Wang, Xuening
last_name: Wang
- first_name: Lixia
full_name: Pan, Lixia
last_name: Pan
- first_name: Shuo
full_name: Lv, Shuo
last_name: Lv
- first_name: Bing
full_name: Cao, Bing
last_name: Cao
- first_name: Yonghong
full_name: Zhang, Yonghong
last_name: Zhang
- first_name: Jinbin
full_name: Wu, Jinbin
last_name: Wu
- first_name: Huibin
full_name: Han, Huibin
id: 31435098-F248-11E8-B48F-1D18A9856A87
last_name: Han
- first_name: Zhubing
full_name: Hu, Zhubing
last_name: Hu
- first_name: Langjun
full_name: Cui, Langjun
last_name: Cui
- first_name: Shinichiro
full_name: Sawa, Shinichiro
last_name: Sawa
- first_name: Junmin
full_name: He, Junmin
last_name: He
- first_name: Guodong
full_name: Wang, Guodong
last_name: Wang
citation:
ama: Zhang L, Shi X, Zhang Y, et al. CLE9 peptide-induced stomatal closure is mediated
by abscisic acid, hydrogen peroxide, and nitric oxide in arabidopsis thaliana.
Plant Cell and Environment. 2018. doi:10.1111/pce.13475
apa: Zhang, L., Shi, X., Zhang, Y., Wang, J., Yang, J., Ishida, T., … Wang, G. (2018).
CLE9 peptide-induced stomatal closure is mediated by abscisic acid, hydrogen peroxide,
and nitric oxide in arabidopsis thaliana. Plant Cell and Environment. Wiley.
https://doi.org/10.1111/pce.13475
chicago: Zhang, Luosha, Xiong Shi, Yutao Zhang, Jiajing Wang, Jingwei Yang, Takashi
Ishida, Wenqian Jiang, et al. “CLE9 Peptide-Induced Stomatal Closure Is Mediated
by Abscisic Acid, Hydrogen Peroxide, and Nitric Oxide in Arabidopsis Thaliana.”
Plant Cell and Environment. Wiley, 2018. https://doi.org/10.1111/pce.13475.
ieee: L. Zhang et al., “CLE9 peptide-induced stomatal closure is mediated
by abscisic acid, hydrogen peroxide, and nitric oxide in arabidopsis thaliana,”
Plant Cell and Environment. Wiley, 2018.
ista: Zhang L, Shi X, Zhang Y, Wang J, Yang J, Ishida T, Jiang W, Han X, Kang J,
Wang X, Pan L, Lv S, Cao B, Zhang Y, Wu J, Han H, Hu Z, Cui L, Sawa S, He J, Wang
G. 2018. CLE9 peptide-induced stomatal closure is mediated by abscisic acid, hydrogen
peroxide, and nitric oxide in arabidopsis thaliana. Plant Cell and Environment.
mla: Zhang, Luosha, et al. “CLE9 Peptide-Induced Stomatal Closure Is Mediated by
Abscisic Acid, Hydrogen Peroxide, and Nitric Oxide in Arabidopsis Thaliana.” Plant
Cell and Environment, Wiley, 2018, doi:10.1111/pce.13475.
short: L. Zhang, X. Shi, Y. Zhang, J. Wang, J. Yang, T. Ishida, W. Jiang, X. Han,
J. Kang, X. Wang, L. Pan, S. Lv, B. Cao, Y. Zhang, J. Wu, H. Han, Z. Hu, L. Cui,
S. Sawa, J. He, G. Wang, Plant Cell and Environment (2018).
date_created: 2019-01-13T22:59:11Z
date_published: 2018-10-31T00:00:00Z
date_updated: 2023-09-11T12:43:31Z
day: '31'
department:
- _id: JiFr
doi: 10.1111/pce.13475
external_id:
isi:
- '000459014800021'
pmid:
- '30378140'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pubmed/30378140
month: '10'
oa: 1
oa_version: Published Version
pmid: 1
publication: Plant Cell and Environment
publication_identifier:
issn:
- '01407791'
publication_status: epub_ahead
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: CLE9 peptide-induced stomatal closure is mediated by abscisic acid, hydrogen
peroxide, and nitric oxide in arabidopsis thaliana
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2018'
...
---
_id: '288'
abstract:
- lang: eng
text: Recent lineage tracing studies have revealed that mammary gland homeostasis
relies on unipotent stem cells. However, whether and when lineage restriction
occurs during embryonic mammary development, and which signals orchestrate cell
fate specification, remain unknown. Using a combination of in vivo clonal analysis
with whole mount immunofluorescence and mathematical modelling of clonal dynamics,
we found that embryonic multipotent mammary cells become lineage-restricted surprisingly
early in development, with evidence for unipotency as early as E12.5 and no statistically
discernable bipotency after E15.5. To gain insights into the mechanisms governing
the switch from multipotency to unipotency, we used gain-of-function Notch1 mice
and demonstrated that Notch activation cell autonomously dictates luminal cell
fate specification to both embryonic and basally committed mammary cells. These
functional studies have important implications for understanding the signals underlying
cell plasticity and serve to clarify how reactivation of embryonic programs in
adult cells can lead to cancer.
article_processing_charge: No
article_type: original
author:
- first_name: Anna
full_name: Lilja, Anna
last_name: Lilja
- first_name: Veronica
full_name: Rodilla, Veronica
last_name: Rodilla
- first_name: Mathilde
full_name: Huyghe, Mathilde
last_name: Huyghe
- first_name: Edouard B
full_name: Hannezo, Edouard B
id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
last_name: Hannezo
orcid: 0000-0001-6005-1561
- first_name: Camille
full_name: Landragin, Camille
last_name: Landragin
- first_name: Olivier
full_name: Renaud, Olivier
last_name: Renaud
- first_name: Olivier
full_name: Leroy, Olivier
last_name: Leroy
- first_name: Steffen
full_name: Rulands, Steffen
last_name: Rulands
- first_name: Benjamin
full_name: Simons, Benjamin
last_name: Simons
- first_name: Silvia
full_name: Fré, Silvia
last_name: Fré
citation:
ama: Lilja A, Rodilla V, Huyghe M, et al. Clonal analysis of Notch1-expressing cells
reveals the existence of unipotent stem cells that retain long-term plasticity
in the embryonic mammary gland. Nature Cell Biology. 2018;20(6):677-687.
doi:10.1038/s41556-018-0108-1
apa: Lilja, A., Rodilla, V., Huyghe, M., Hannezo, E. B., Landragin, C., Renaud,
O., … Fré, S. (2018). Clonal analysis of Notch1-expressing cells reveals the existence
of unipotent stem cells that retain long-term plasticity in the embryonic mammary
gland. Nature Cell Biology. Nature Publishing Group. https://doi.org/10.1038/s41556-018-0108-1
chicago: Lilja, Anna, Veronica Rodilla, Mathilde Huyghe, Edouard B Hannezo, Camille
Landragin, Olivier Renaud, Olivier Leroy, Steffen Rulands, Benjamin Simons, and
Silvia Fré. “Clonal Analysis of Notch1-Expressing Cells Reveals the Existence
of Unipotent Stem Cells That Retain Long-Term Plasticity in the Embryonic Mammary
Gland.” Nature Cell Biology. Nature Publishing Group, 2018. https://doi.org/10.1038/s41556-018-0108-1.
ieee: A. Lilja et al., “Clonal analysis of Notch1-expressing cells reveals
the existence of unipotent stem cells that retain long-term plasticity in the
embryonic mammary gland,” Nature Cell Biology, vol. 20, no. 6. Nature Publishing
Group, pp. 677–687, 2018.
ista: Lilja A, Rodilla V, Huyghe M, Hannezo EB, Landragin C, Renaud O, Leroy O,
Rulands S, Simons B, Fré S. 2018. Clonal analysis of Notch1-expressing cells reveals
the existence of unipotent stem cells that retain long-term plasticity in the
embryonic mammary gland. Nature Cell Biology. 20(6), 677–687.
mla: Lilja, Anna, et al. “Clonal Analysis of Notch1-Expressing Cells Reveals the
Existence of Unipotent Stem Cells That Retain Long-Term Plasticity in the Embryonic
Mammary Gland.” Nature Cell Biology, vol. 20, no. 6, Nature Publishing
Group, 2018, pp. 677–87, doi:10.1038/s41556-018-0108-1.
short: A. Lilja, V. Rodilla, M. Huyghe, E.B. Hannezo, C. Landragin, O. Renaud, O.
Leroy, S. Rulands, B. Simons, S. Fré, Nature Cell Biology 20 (2018) 677–687.
date_created: 2018-12-11T11:45:38Z
date_published: 2018-05-21T00:00:00Z
date_updated: 2023-09-11T12:44:08Z
day: '21'
department:
- _id: EdHa
doi: 10.1038/s41556-018-0108-1
external_id:
isi:
- '000433237300003'
pmid:
- '29784917'
intvolume: ' 20'
isi: 1
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6984964
month: '05'
oa: 1
oa_version: Submitted Version
page: 677 - 687
pmid: 1
publication: Nature Cell Biology
publication_status: published
publisher: Nature Publishing Group
publist_id: '7594'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Clonal analysis of Notch1-expressing cells reveals the existence of unipotent
stem cells that retain long-term plasticity in the embryonic mammary gland
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 20
year: '2018'
...
---
_id: '304'
abstract:
- lang: eng
text: "Additive manufacturing has recently seen drastic improvements in resolution,
making it now possible to fabricate features at scales of hundreds or even dozens
of nanometers, which previously required very expensive lithographic methods.\r\nAs
a result, additive manufacturing now seems poised for optical applications, including
those relevant to computer graphics, such as material design, as well as display
and imaging applications.\r\n \r\nIn this work, we explore the use of additive
manufacturing for generating structural colors, where the structures are designed
using a fabrication-aware optimization process.\r\nThis requires a combination
of full-wave simulation, a feasible parameterization of the design space, and
a tailored optimization procedure.\r\nMany of these components should be re-usable
for the design of other optical structures at this scale.\r\n \r\nWe show initial
results of material samples fabricated based on our designs.\r\nWhile these suffer
from the prototype character of state-of-the-art fabrication hardware, we believe
they clearly demonstrate the potential of additive nanofabrication for structural
colors and other graphics applications."
acknowledgement: This work was in part supported by King Abdullah University of Science
and Technology Baseline Funding.
alternative_title:
- ACM Transactions on Graphics
article_number: '159'
article_processing_charge: No
author:
- first_name: Thomas
full_name: Auzinger, Thomas
id: 4718F954-F248-11E8-B48F-1D18A9856A87
last_name: Auzinger
orcid: 0000-0002-1546-3265
- first_name: Wolfgang
full_name: Heidrich, Wolfgang
last_name: Heidrich
- first_name: Bernd
full_name: Bickel, Bernd
id: 49876194-F248-11E8-B48F-1D18A9856A87
last_name: Bickel
orcid: 0000-0001-6511-9385
citation:
ama: Auzinger T, Heidrich W, Bickel B. Computational design of nanostructural color
for additive manufacturing. ACM Transactions on Graphics. 2018;37(4). doi:10.1145/3197517.3201376
apa: Auzinger, T., Heidrich, W., & Bickel, B. (2018). Computational design of
nanostructural color for additive manufacturing. ACM Transactions on Graphics.
ACM. https://doi.org/10.1145/3197517.3201376
chicago: Auzinger, Thomas, Wolfgang Heidrich, and Bernd Bickel. “Computational Design
of Nanostructural Color for Additive Manufacturing.” ACM Transactions on Graphics.
ACM, 2018. https://doi.org/10.1145/3197517.3201376.
ieee: T. Auzinger, W. Heidrich, and B. Bickel, “Computational design of nanostructural
color for additive manufacturing,” ACM Transactions on Graphics, vol. 37,
no. 4. ACM, 2018.
ista: Auzinger T, Heidrich W, Bickel B. 2018. Computational design of nanostructural
color for additive manufacturing. ACM Transactions on Graphics. 37(4), 159.
mla: Auzinger, Thomas, et al. “Computational Design of Nanostructural Color for
Additive Manufacturing.” ACM Transactions on Graphics, vol. 37, no. 4,
159, ACM, 2018, doi:10.1145/3197517.3201376.
short: T. Auzinger, W. Heidrich, B. Bickel, ACM Transactions on Graphics 37 (2018).
date_created: 2018-12-11T11:45:43Z
date_published: 2018-08-01T00:00:00Z
date_updated: 2023-09-11T12:46:13Z
day: '01'
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ec_funded: 1
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has_accepted_license: '1'
intvolume: ' 37'
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language:
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month: '08'
oa: 1
oa_version: Submitted Version
project:
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call_identifier: H2020
grant_number: '715767'
name: 'MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and
Modeling'
publication: ACM Transactions on Graphics
publication_status: published
publisher: ACM
pubrep_id: '1028'
quality_controlled: '1'
related_material:
link:
- description: News on IST Homepage
relation: press_release
url: https://ist.ac.at/en/news/color-effects-from-transparent-3d-printed-nanostructures/
scopus_import: '1'
status: public
title: Computational design of nanostructural color for additive manufacturing
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 37
year: '2018'
...
---
_id: '12'
abstract:
- lang: eng
text: Molding is a popular mass production method, in which the initial expenses
for the mold are offset by the low per-unit production cost. However, the physical
fabrication constraints of the molding technique commonly restrict the shape of
moldable objects. For a complex shape, a decomposition of the object into moldable
parts is a common strategy to address these constraints, with plastic model kits
being a popular and illustrative example. However, conducting such a decomposition
requires considerable expertise, and it depends on the technical aspects of the
fabrication technique, as well as aesthetic considerations. We present an interactive
technique to create such decompositions for two-piece molding, in which each part
of the object is cast between two rigid mold pieces. Given the surface description
of an object, we decompose its thin-shell equivalent into moldable parts by first
performing a coarse decomposition and then utilizing an active contour model for
the boundaries between individual parts. Formulated as an optimization problem,
the movement of the contours is guided by an energy reflecting fabrication constraints
to ensure the moldability of each part. Simultaneously, the user is provided with
editing capabilities to enforce aesthetic guidelines. Our interactive interface
provides control of the contour positions by allowing, for example, the alignment
of part boundaries with object features. Our technique enables a novel workflow,
as it empowers novice users to explore the design space, and it generates fabrication-ready
two-piece molds that can be used either for casting or industrial injection molding
of free-form objects.
article_number: '135'
article_processing_charge: No
author:
- first_name: Kazutaka
full_name: Nakashima, Kazutaka
last_name: Nakashima
- first_name: Thomas
full_name: Auzinger, Thomas
id: 4718F954-F248-11E8-B48F-1D18A9856A87
last_name: Auzinger
orcid: 0000-0002-1546-3265
- first_name: Emmanuel
full_name: Iarussi, Emmanuel
id: 33F19F16-F248-11E8-B48F-1D18A9856A87
last_name: Iarussi
- first_name: Ran
full_name: Zhang, Ran
id: 4DDBCEB0-F248-11E8-B48F-1D18A9856A87
last_name: Zhang
orcid: 0000-0002-3808-281X
- first_name: Takeo
full_name: Igarashi, Takeo
last_name: Igarashi
- first_name: Bernd
full_name: Bickel, Bernd
id: 49876194-F248-11E8-B48F-1D18A9856A87
last_name: Bickel
orcid: 0000-0001-6511-9385
citation:
ama: 'Nakashima K, Auzinger T, Iarussi E, Zhang R, Igarashi T, Bickel B. CoreCavity:
Interactive shell decomposition for fabrication with two-piece rigid molds. ACM
Transaction on Graphics. 2018;37(4). doi:10.1145/3197517.3201341'
apa: 'Nakashima, K., Auzinger, T., Iarussi, E., Zhang, R., Igarashi, T., & Bickel,
B. (2018). CoreCavity: Interactive shell decomposition for fabrication with two-piece
rigid molds. ACM Transaction on Graphics. ACM. https://doi.org/10.1145/3197517.3201341'
chicago: 'Nakashima, Kazutaka, Thomas Auzinger, Emmanuel Iarussi, Ran Zhang, Takeo
Igarashi, and Bernd Bickel. “CoreCavity: Interactive Shell Decomposition for Fabrication
with Two-Piece Rigid Molds.” ACM Transaction on Graphics. ACM, 2018. https://doi.org/10.1145/3197517.3201341.'
ieee: 'K. Nakashima, T. Auzinger, E. Iarussi, R. Zhang, T. Igarashi, and B. Bickel,
“CoreCavity: Interactive shell decomposition for fabrication with two-piece rigid
molds,” ACM Transaction on Graphics, vol. 37, no. 4. ACM, 2018.'
ista: 'Nakashima K, Auzinger T, Iarussi E, Zhang R, Igarashi T, Bickel B. 2018.
CoreCavity: Interactive shell decomposition for fabrication with two-piece rigid
molds. ACM Transaction on Graphics. 37(4), 135.'
mla: 'Nakashima, Kazutaka, et al. “CoreCavity: Interactive Shell Decomposition for
Fabrication with Two-Piece Rigid Molds.” ACM Transaction on Graphics, vol.
37, no. 4, 135, ACM, 2018, doi:10.1145/3197517.3201341.'
short: K. Nakashima, T. Auzinger, E. Iarussi, R. Zhang, T. Igarashi, B. Bickel,
ACM Transaction on Graphics 37 (2018).
date_created: 2018-12-11T11:44:09Z
date_published: 2018-08-04T00:00:00Z
date_updated: 2023-09-11T12:48:09Z
day: '04'
ddc:
- '004'
- '516'
- '670'
department:
- _id: BeBi
doi: 10.1145/3197517.3201341
ec_funded: 1
external_id:
isi:
- '000448185000096'
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creator: system
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date_updated: 2020-07-14T12:44:38Z
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issue: '4'
language:
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month: '08'
oa: 1
oa_version: Submitted Version
project:
- _id: 24F9549A-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '715767'
name: 'MATERIALIZABLE: Intelligent fabrication-oriented Computational Design and
Modeling'
- _id: 2508E324-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '642841'
name: Distributed 3D Object Design
publication: ACM Transaction on Graphics
publication_status: published
publisher: ACM
publist_id: '8044'
pubrep_id: '1037'
quality_controlled: '1'
related_material:
link:
- description: News on IST Homepage
relation: press_release
url: https://ist.ac.at/en/news/interactive-software-tool-makes-complex-mold-design-simple/
scopus_import: '1'
status: public
title: 'CoreCavity: Interactive shell decomposition for fabrication with two-piece
rigid molds'
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 37
year: '2018'
...
---
_id: '454'
abstract:
- lang: eng
text: Direct reciprocity is a mechanism for cooperation among humans. Many of our
daily interactions are repeated. We interact repeatedly with our family, friends,
colleagues, members of the local and even global community. In the theory of repeated
games, it is a tacit assumption that the various games that a person plays simultaneously
have no effect on each other. Here we introduce a general framework that allows
us to analyze “crosstalk” between a player’s concurrent games. In the presence
of crosstalk, the action a person experiences in one game can alter the person’s
decision in another. We find that crosstalk impedes the maintenance of cooperation
and requires stronger levels of forgiveness. The magnitude of the effect depends
on the population structure. In more densely connected social groups, crosstalk
has a stronger effect. A harsh retaliator, such as Tit-for-Tat, is unable to counteract
crosstalk. The crosstalk framework provides a unified interpretation of direct
and upstream reciprocity in the context of repeated games.
acknowledgement: "This work was supported by the European Research Council (ERC) start
grant 279307: Graph Games (C.K.), Austrian Science Fund (FWF) grant no P23499-N23
(C.K.), FWF\r\nNFN grant no S11407-N23 RiSE/SHiNE (C.K.), Office of Naval Research
grant N00014-16-1-2914 (M.A.N.), National Cancer Institute grant CA179991 (M.A.N.)
and by the John Templeton Foundation. J.G.R. is supported by an Erwin Schrödinger
fellowship\r\n(Austrian Science Fund FWF J-3996). C.H. acknowledges generous support
from the\r\nISTFELLOW program. The Program for Evolutionary Dynamics is supported
in part by\r\na gift from B Wu and Eric Larson."
article_number: '555'
article_processing_charge: No
author:
- first_name: Johannes
full_name: Reiter, Johannes
id: 4A918E98-F248-11E8-B48F-1D18A9856A87
last_name: Reiter
orcid: 0000-0002-0170-7353
- first_name: Christian
full_name: Hilbe, Christian
id: 2FDF8F3C-F248-11E8-B48F-1D18A9856A87
last_name: Hilbe
orcid: 0000-0001-5116-955X
- first_name: David
full_name: Rand, David
last_name: Rand
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Martin
full_name: Nowak, Martin
last_name: Nowak
citation:
ama: Reiter J, Hilbe C, Rand D, Chatterjee K, Nowak M. Crosstalk in concurrent repeated
games impedes direct reciprocity and requires stronger levels of forgiveness.
Nature Communications. 2018;9(1). doi:10.1038/s41467-017-02721-8
apa: Reiter, J., Hilbe, C., Rand, D., Chatterjee, K., & Nowak, M. (2018). Crosstalk
in concurrent repeated games impedes direct reciprocity and requires stronger
levels of forgiveness. Nature Communications. Nature Publishing Group.
https://doi.org/10.1038/s41467-017-02721-8
chicago: Reiter, Johannes, Christian Hilbe, David Rand, Krishnendu Chatterjee, and
Martin Nowak. “Crosstalk in Concurrent Repeated Games Impedes Direct Reciprocity
and Requires Stronger Levels of Forgiveness.” Nature Communications. Nature
Publishing Group, 2018. https://doi.org/10.1038/s41467-017-02721-8.
ieee: J. Reiter, C. Hilbe, D. Rand, K. Chatterjee, and M. Nowak, “Crosstalk in concurrent
repeated games impedes direct reciprocity and requires stronger levels of forgiveness,”
Nature Communications, vol. 9, no. 1. Nature Publishing Group, 2018.
ista: Reiter J, Hilbe C, Rand D, Chatterjee K, Nowak M. 2018. Crosstalk in concurrent
repeated games impedes direct reciprocity and requires stronger levels of forgiveness.
Nature Communications. 9(1), 555.
mla: Reiter, Johannes, et al. “Crosstalk in Concurrent Repeated Games Impedes Direct
Reciprocity and Requires Stronger Levels of Forgiveness.” Nature Communications,
vol. 9, no. 1, 555, Nature Publishing Group, 2018, doi:10.1038/s41467-017-02721-8.
short: J. Reiter, C. Hilbe, D. Rand, K. Chatterjee, M. Nowak, Nature Communications
9 (2018).
date_created: 2018-12-11T11:46:34Z
date_published: 2018-02-07T00:00:00Z
date_updated: 2023-09-11T12:51:03Z
day: '07'
ddc:
- '004'
department:
- _id: KrCh
doi: 10.1038/s41467-017-02721-8
ec_funded: 1
external_id:
isi:
- '000424318200001'
file:
- access_level: open_access
checksum: b6b90367545b4c615891c960ab0567f1
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:09:18Z
date_updated: 2020-07-14T12:46:31Z
file_id: '4741'
file_name: IST-2018-964-v1+1_2018_Hilbe_Crosstalk_in.pdf
file_size: 843646
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file_date_updated: 2020-07-14T12:46:31Z
has_accepted_license: '1'
intvolume: ' 9'
isi: 1
issue: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
project:
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2584A770-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 23499-N23
name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25863FF4-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11407
name: Game Theory
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
publication: Nature Communications
publication_status: published
publisher: Nature Publishing Group
publist_id: '7368'
pubrep_id: '964'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Crosstalk in concurrent repeated games impedes direct reciprocity and requires
stronger levels of forgiveness
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 9
year: '2018'
...
---
_id: '320'
abstract:
- lang: eng
text: 'Fast-spiking, parvalbumin-expressing GABAergic interneurons (PV+-BCs) express
a complex machinery of rapid signaling mechanisms, including specialized voltage-gated
ion channels to generate brief action potentials (APs). However, short APs are
associated with overlapping Na+ and K+ fluxes and are therefore energetically
expensive. How the potentially vicious combination of high AP frequency and inefficient
spike generation can be reconciled with limited energy supply is presently unclear.
To address this question, we performed direct recordings from the PV+-BC axon,
the subcellular structure where active conductances for AP initiation and propagation
are located. Surprisingly, the energy required for the AP was, on average, only
∼1.6 times the theoretical minimum. High energy efficiency emerged from the combination
of fast inactivation of Na+ channels and delayed activation of Kv3-type K+ channels,
which minimized ion flux overlap during APs. Thus, the complementary tuning of
axonal Na+ and K+ channel gating optimizes both fast signaling properties and
metabolic efficiency. Hu et al. demonstrate that action potentials in parvalbumin-expressing
GABAergic interneuron axons are energetically efficient, which is highly unexpected
given their brief duration. High energy efficiency emerges from the combination
of fast inactivation of voltage-gated Na+ channels and delayed activation of Kv3
channels in the axon. '
article_processing_charge: Yes (in subscription journal)
author:
- first_name: Hua
full_name: Hu, Hua
id: 4AC0145C-F248-11E8-B48F-1D18A9856A87
last_name: Hu
- first_name: Fabian
full_name: Roth, Fabian
last_name: Roth
- first_name: David H
full_name: Vandael, David H
id: 3AE48E0A-F248-11E8-B48F-1D18A9856A87
last_name: Vandael
orcid: 0000-0001-7577-1676
- first_name: Peter M
full_name: Jonas, Peter M
id: 353C1B58-F248-11E8-B48F-1D18A9856A87
last_name: Jonas
orcid: 0000-0001-5001-4804
citation:
ama: Hu H, Roth F, Vandael DH, Jonas PM. Complementary tuning of Na+ and K+ channel
gating underlies fast and energy-efficient action potentials in GABAergic interneuron
axons. Neuron. 2018;98(1):156-165. doi:10.1016/j.neuron.2018.02.024
apa: Hu, H., Roth, F., Vandael, D. H., & Jonas, P. M. (2018). Complementary
tuning of Na+ and K+ channel gating underlies fast and energy-efficient action
potentials in GABAergic interneuron axons. Neuron. Elsevier. https://doi.org/10.1016/j.neuron.2018.02.024
chicago: Hu, Hua, Fabian Roth, David H Vandael, and Peter M Jonas. “Complementary
Tuning of Na+ and K+ Channel Gating Underlies Fast and Energy-Efficient Action
Potentials in GABAergic Interneuron Axons.” Neuron. Elsevier, 2018. https://doi.org/10.1016/j.neuron.2018.02.024.
ieee: H. Hu, F. Roth, D. H. Vandael, and P. M. Jonas, “Complementary tuning of Na+
and K+ channel gating underlies fast and energy-efficient action potentials in
GABAergic interneuron axons,” Neuron, vol. 98, no. 1. Elsevier, pp. 156–165,
2018.
ista: Hu H, Roth F, Vandael DH, Jonas PM. 2018. Complementary tuning of Na+ and
K+ channel gating underlies fast and energy-efficient action potentials in GABAergic
interneuron axons. Neuron. 98(1), 156–165.
mla: Hu, Hua, et al. “Complementary Tuning of Na+ and K+ Channel Gating Underlies
Fast and Energy-Efficient Action Potentials in GABAergic Interneuron Axons.” Neuron,
vol. 98, no. 1, Elsevier, 2018, pp. 156–65, doi:10.1016/j.neuron.2018.02.024.
short: H. Hu, F. Roth, D.H. Vandael, P.M. Jonas, Neuron 98 (2018) 156–165.
date_created: 2018-12-11T11:45:48Z
date_published: 2018-04-04T00:00:00Z
date_updated: 2023-09-11T12:45:10Z
day: '04'
ddc:
- '570'
department:
- _id: PeJo
doi: 10.1016/j.neuron.2018.02.024
ec_funded: 1
external_id:
isi:
- '000429192100016'
file:
- access_level: open_access
checksum: 76070f3729f9c603e1080d0151aa2b11
content_type: application/pdf
creator: dernst
date_created: 2018-12-17T10:37:50Z
date_updated: 2020-07-14T12:46:03Z
file_id: '5690'
file_name: 2018_Neuron_Hu.pdf
file_size: 3180444
relation: main_file
file_date_updated: 2020-07-14T12:46:03Z
has_accepted_license: '1'
intvolume: ' 98'
isi: 1
issue: '1'
language:
- iso: eng
month: '04'
oa: 1
oa_version: Published Version
page: 156 - 165
project:
- _id: 25C0F108-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '268548'
name: Nanophysiology of fast-spiking, parvalbumin-expressing GABAergic interneurons
- _id: 25B7EB9E-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '692692'
name: Biophysics and circuit function of a giant cortical glumatergic synapse
- _id: 25C26B1E-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P24909-B24
name: Mechanisms of transmitter release at GABAergic synapses
- _id: 25C5A090-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z00312
name: The Wittgenstein Prize
publication: Neuron
publication_status: published
publisher: Elsevier
publist_id: '7545'
quality_controlled: '1'
related_material:
link:
- description: News on IST Homepage
relation: press_release
url: https://ist.ac.at/en/news/a-certain-type-of-neurons-is-more-energy-efficient-than-previously-assumed/
scopus_import: '1'
status: public
title: Complementary tuning of Na+ and K+ channel gating underlies fast and energy-efficient
action potentials in GABAergic interneuron axons
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 98
year: '2018'
...
---
_id: '423'
abstract:
- lang: eng
text: Herd immunity, a process in which resistant individuals limit the spread of
a pathogen among susceptible hosts has been extensively studied in eukaryotes.
Even though bacteria have evolved multiple immune systems against their phage
pathogens, herd immunity in bacteria remains unexplored. Here we experimentally
demonstrate that herd immunity arises during phage epidemics in structured and
unstructured Escherichia coli populations consisting of differing frequencies
of susceptible and resistant cells harboring CRISPR immunity. In addition, we
develop a mathematical model that quantifies how herd immunity is affected by
spatial population structure, bacterial growth rate, and phage replication rate.
Using our model we infer a general epidemiological rule describing the relative
speed of an epidemic in partially resistant spatially structured populations.
Our experimental and theoretical findings indicate that herd immunity may be important
in bacterial communities, allowing for stable coexistence of bacteria and their
phages and the maintenance of polymorphism in bacterial immunity.
acknowledgement: "We are grateful to Remy Chait for his help and assistance with establishing
our experimental setups and to Tobias Bergmiller for valuable insights into some
specific experimental details. We thank Luciano Marraffini for donating us the pCas9
plasmid used in this study. We also want to express our gratitude to Seth Barribeau,
Andrea Betancourt, Călin Guet, Mato Lagator, Tiago Paixão and Maroš Pleška for valuable
discussions on the manuscript. Finally, we would like to thank the \r\neditors and
reviewers for their helpful comments and suggestions."
article_number: e32035
article_processing_charge: No
author:
- first_name: Pavel
full_name: Payne, Pavel
id: 35F78294-F248-11E8-B48F-1D18A9856A87
last_name: Payne
orcid: 0000-0002-2711-9453
- first_name: Lukas
full_name: Geyrhofer, Lukas
last_name: Geyrhofer
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
- first_name: Jonathan P
full_name: Bollback, Jonathan P
id: 2C6FA9CC-F248-11E8-B48F-1D18A9856A87
last_name: Bollback
orcid: 0000-0002-4624-4612
citation:
ama: Payne P, Geyrhofer L, Barton NH, Bollback JP. CRISPR-based herd immunity can
limit phage epidemics in bacterial populations. eLife. 2018;7. doi:10.7554/eLife.32035
apa: Payne, P., Geyrhofer, L., Barton, N. H., & Bollback, J. P. (2018). CRISPR-based
herd immunity can limit phage epidemics in bacterial populations. ELife.
eLife Sciences Publications. https://doi.org/10.7554/eLife.32035
chicago: Payne, Pavel, Lukas Geyrhofer, Nicholas H Barton, and Jonathan P Bollback.
“CRISPR-Based Herd Immunity Can Limit Phage Epidemics in Bacterial Populations.”
ELife. eLife Sciences Publications, 2018. https://doi.org/10.7554/eLife.32035.
ieee: P. Payne, L. Geyrhofer, N. H. Barton, and J. P. Bollback, “CRISPR-based herd
immunity can limit phage epidemics in bacterial populations,” eLife, vol.
7. eLife Sciences Publications, 2018.
ista: Payne P, Geyrhofer L, Barton NH, Bollback JP. 2018. CRISPR-based herd immunity
can limit phage epidemics in bacterial populations. eLife. 7, e32035.
mla: Payne, Pavel, et al. “CRISPR-Based Herd Immunity Can Limit Phage Epidemics
in Bacterial Populations.” ELife, vol. 7, e32035, eLife Sciences Publications,
2018, doi:10.7554/eLife.32035.
short: P. Payne, L. Geyrhofer, N.H. Barton, J.P. Bollback, ELife 7 (2018).
date_created: 2018-12-11T11:46:23Z
date_published: 2018-03-09T00:00:00Z
date_updated: 2023-09-11T12:49:17Z
day: '09'
ddc:
- '576'
department:
- _id: NiBa
- _id: JoBo
doi: 10.7554/eLife.32035
ec_funded: 1
external_id:
isi:
- '000431035800001'
file:
- access_level: open_access
checksum: 447cf6e680bdc3c01062a8737d876569
content_type: application/pdf
creator: dernst
date_created: 2018-12-17T10:36:07Z
date_updated: 2020-07-14T12:46:25Z
file_id: '5689'
file_name: 2018_eLife_Payne.pdf
file_size: 3533881
relation: main_file
file_date_updated: 2020-07-14T12:46:25Z
has_accepted_license: '1'
intvolume: ' 7'
isi: 1
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
project:
- _id: 2578D616-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '648440'
name: Selective Barriers to Horizontal Gene Transfer
publication: eLife
publication_status: published
publisher: eLife Sciences Publications
publist_id: '7400'
quality_controlled: '1'
related_material:
record:
- id: '9840'
relation: research_data
status: public
scopus_import: '1'
status: public
title: CRISPR-based herd immunity can limit phage epidemics in bacterial populations
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 7
year: '2018'
...
---
_id: '5791'
abstract:
- lang: eng
text: Due to data compression or low resolution, nearby vertices and edges of a
graph drawing may be bundled to a common node or arc. We model such a “compromised”
drawing by a piecewise linear map φ:G → ℝ. We wish to perturb φ by an arbitrarily
small ε>0 into a proper drawing (in which the vertices are distinct points, any
two edges intersect in finitely many points, and no three edges have a common
interior point) that minimizes the number of crossings. An ε-perturbation, for
every ε>0, is given by a piecewise linear map (Formula Presented), where with
||·|| is the uniform norm (i.e., sup norm). We present a polynomial-time solution
for this optimization problem when G is a cycle and the map φ has no spurs (i.e.,
no two adjacent edges are mapped to overlapping arcs). We also show that the problem
becomes NP-complete (i) when G is an arbitrary graph and φ has no spurs, and (ii)
when φ may have spurs and G is a cycle or a union of disjoint paths.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Radoslav
full_name: Fulek, Radoslav
id: 39F3FFE4-F248-11E8-B48F-1D18A9856A87
last_name: Fulek
orcid: 0000-0001-8485-1774
- first_name: Csaba D.
full_name: Tóth, Csaba D.
last_name: Tóth
citation:
ama: 'Fulek R, Tóth CD. Crossing minimization in perturbed drawings. In: Vol 11282.
Springer; 2018:229-241. doi:10.1007/978-3-030-04414-5_16'
apa: 'Fulek, R., & Tóth, C. D. (2018). Crossing minimization in perturbed drawings
(Vol. 11282, pp. 229–241). Presented at the Graph Drawing and Network Visualization,
Barcelona, Spain: Springer. https://doi.org/10.1007/978-3-030-04414-5_16'
chicago: Fulek, Radoslav, and Csaba D. Tóth. “Crossing Minimization in Perturbed
Drawings,” 11282:229–41. Springer, 2018. https://doi.org/10.1007/978-3-030-04414-5_16.
ieee: R. Fulek and C. D. Tóth, “Crossing minimization in perturbed drawings,” presented
at the Graph Drawing and Network Visualization, Barcelona, Spain, 2018, vol. 11282,
pp. 229–241.
ista: Fulek R, Tóth CD. 2018. Crossing minimization in perturbed drawings. Graph
Drawing and Network Visualization, LNCS, vol. 11282, 229–241.
mla: Fulek, Radoslav, and Csaba D. Tóth. Crossing Minimization in Perturbed Drawings.
Vol. 11282, Springer, 2018, pp. 229–41, doi:10.1007/978-3-030-04414-5_16.
short: R. Fulek, C.D. Tóth, in:, Springer, 2018, pp. 229–241.
conference:
end_date: 2018-09-28
location: Barcelona, Spain
name: Graph Drawing and Network Visualization
start_date: 2018-09-26
date_created: 2018-12-30T22:59:15Z
date_published: 2018-12-18T00:00:00Z
date_updated: 2023-09-11T12:49:55Z
day: '18'
department:
- _id: UlWa
doi: 10.1007/978-3-030-04414-5_16
external_id:
arxiv:
- '1808.07608'
isi:
- '000672802500016'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1808.07608
month: '12'
oa: 1
oa_version: Preprint
page: 229-241
publication_identifier:
isbn:
- '9783030044138'
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
status: public
title: Crossing minimization in perturbed drawings
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: '11282 '
year: '2018'
...
---
_id: '291'
abstract:
- lang: eng
text: Over the past decade, the edge of chaos has proven to be a fruitful starting
point for investigations of shear flows when the laminar base flow is linearly
stable. Numerous computational studies of shear flows demonstrated the existence
of states that separate laminar and turbulent regions of the state space. In addition,
some studies determined invariant solutions that reside on this edge. In this
paper, we study the unstable manifold of one such solution with the aid of continuous
symmetry reduction, which we formulate here for the simultaneous quotiening of
axial and azimuthal symmetries. Upon our investigation of the unstable manifold,
we discover a previously unknown traveling-wave solution on the laminar-turbulent
boundary with a relatively complex structure. By means of low-dimensional projections,
we visualize different dynamical paths that connect these solutions to the turbulence.
Our numerical experiments demonstrate that the laminar-turbulent boundary exhibits
qualitatively different regions whose properties are influenced by the nearby
invariant solutions.
article_number: '054401'
article_processing_charge: No
author:
- first_name: Nazmi B
full_name: Budanur, Nazmi B
id: 3EA1010E-F248-11E8-B48F-1D18A9856A87
last_name: Budanur
orcid: 0000-0003-0423-5010
- first_name: Björn
full_name: Hof, Björn
id: 3A374330-F248-11E8-B48F-1D18A9856A87
last_name: Hof
orcid: 0000-0003-2057-2754
citation:
ama: Budanur NB, Hof B. Complexity of the laminar-turbulent boundary in pipe flow.
Physical Review Fluids. 2018;3(5). doi:10.1103/PhysRevFluids.3.054401
apa: Budanur, N. B., & Hof, B. (2018). Complexity of the laminar-turbulent boundary
in pipe flow. Physical Review Fluids. American Physical Society. https://doi.org/10.1103/PhysRevFluids.3.054401
chicago: Budanur, Nazmi B, and Björn Hof. “Complexity of the Laminar-Turbulent Boundary
in Pipe Flow.” Physical Review Fluids. American Physical Society, 2018.
https://doi.org/10.1103/PhysRevFluids.3.054401.
ieee: N. B. Budanur and B. Hof, “Complexity of the laminar-turbulent boundary in
pipe flow,” Physical Review Fluids, vol. 3, no. 5. American Physical Society,
2018.
ista: Budanur NB, Hof B. 2018. Complexity of the laminar-turbulent boundary in pipe
flow. Physical Review Fluids. 3(5), 054401.
mla: Budanur, Nazmi B., and Björn Hof. “Complexity of the Laminar-Turbulent Boundary
in Pipe Flow.” Physical Review Fluids, vol. 3, no. 5, 054401, American
Physical Society, 2018, doi:10.1103/PhysRevFluids.3.054401.
short: N.B. Budanur, B. Hof, Physical Review Fluids 3 (2018).
date_created: 2018-12-11T11:45:39Z
date_published: 2018-05-30T00:00:00Z
date_updated: 2023-09-11T12:45:44Z
day: '30'
department:
- _id: BjHo
doi: 10.1103/PhysRevFluids.3.054401
external_id:
arxiv:
- '1802.01918'
isi:
- '000433426200001'
intvolume: ' 3'
isi: 1
issue: '5'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1802.01918
month: '05'
oa: 1
oa_version: Preprint
publication: Physical Review Fluids
publication_status: published
publisher: American Physical Society
publist_id: '7590'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Complexity of the laminar-turbulent boundary in pipe flow
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 3
year: '2018'
...
---
_id: '58'
abstract:
- lang: eng
text: 'Inside a two-dimensional region (``cake""), there are m nonoverlapping
tiles of a certain kind (``toppings""). We want to expand the toppings
while keeping them nonoverlapping, and possibly add some blank pieces of the same
``certain kind,"" such that the entire cake is covered. How many blanks
must we add? We study this question in several cases: (1) The cake and toppings
are general polygons. (2) The cake and toppings are convex figures. (3) The cake
and toppings are axis-parallel rectangles. (4) The cake is an axis-parallel rectilinear
polygon and the toppings are axis-parallel rectangles. In all four cases, we provide
tight bounds on the number of blanks.'
article_processing_charge: No
author:
- first_name: Arseniy
full_name: Akopyan, Arseniy
id: 430D2C90-F248-11E8-B48F-1D18A9856A87
last_name: Akopyan
orcid: 0000-0002-2548-617X
- first_name: Erel
full_name: Segal Halevi, Erel
last_name: Segal Halevi
citation:
ama: Akopyan A, Segal Halevi E. Counting blanks in polygonal arrangements. SIAM
Journal on Discrete Mathematics. 2018;32(3):2242-2257. doi:10.1137/16M110407X
apa: Akopyan, A., & Segal Halevi, E. (2018). Counting blanks in polygonal arrangements.
SIAM Journal on Discrete Mathematics. Society for Industrial and Applied
Mathematics . https://doi.org/10.1137/16M110407X
chicago: Akopyan, Arseniy, and Erel Segal Halevi. “Counting Blanks in Polygonal
Arrangements.” SIAM Journal on Discrete Mathematics. Society for Industrial
and Applied Mathematics , 2018. https://doi.org/10.1137/16M110407X.
ieee: A. Akopyan and E. Segal Halevi, “Counting blanks in polygonal arrangements,”
SIAM Journal on Discrete Mathematics, vol. 32, no. 3. Society for Industrial
and Applied Mathematics , pp. 2242–2257, 2018.
ista: Akopyan A, Segal Halevi E. 2018. Counting blanks in polygonal arrangements.
SIAM Journal on Discrete Mathematics. 32(3), 2242–2257.
mla: Akopyan, Arseniy, and Erel Segal Halevi. “Counting Blanks in Polygonal Arrangements.”
SIAM Journal on Discrete Mathematics, vol. 32, no. 3, Society for Industrial
and Applied Mathematics , 2018, pp. 2242–57, doi:10.1137/16M110407X.
short: A. Akopyan, E. Segal Halevi, SIAM Journal on Discrete Mathematics 32 (2018)
2242–2257.
date_created: 2018-12-11T11:44:24Z
date_published: 2018-09-06T00:00:00Z
date_updated: 2023-09-11T12:48:39Z
day: '06'
department:
- _id: HeEd
doi: 10.1137/16M110407X
ec_funded: 1
external_id:
arxiv:
- '1604.00960'
isi:
- '000450810500036'
intvolume: ' 32'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1604.00960
month: '09'
oa: 1
oa_version: Preprint
page: 2242 - 2257
project:
- _id: 25681D80-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '291734'
name: International IST Postdoc Fellowship Programme
publication: SIAM Journal on Discrete Mathematics
publication_status: published
publisher: 'Society for Industrial and Applied Mathematics '
publist_id: '7996'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Counting blanks in polygonal arrangements
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 32
year: '2018'
...
---
_id: '9840'
abstract:
- lang: eng
text: Herd immunity, a process in which resistant individuals limit the spread of
a pathogen among susceptible hosts has been extensively studied in eukaryotes.
Even though bacteria have evolved multiple immune systems against their phage
pathogens, herd immunity in bacteria remains unexplored. Here we experimentally
demonstrate that herd immunity arises during phage epidemics in structured and
unstructured Escherichia coli populations consisting of differing frequencies
of susceptible and resistant cells harboring CRISPR immunity. In addition, we
develop a mathematical model that quantifies how herd immunity is affected by
spatial population structure, bacterial growth rate, and phage replication rate.
Using our model we infer a general epidemiological rule describing the relative
speed of an epidemic in partially resistant spatially structured populations.
Our experimental and theoretical findings indicate that herd immunity may be important
in bacterial communities, allowing for stable coexistence of bacteria and their
phages and the maintenance of polymorphism in bacterial immunity.
article_processing_charge: No
author:
- first_name: Pavel
full_name: Payne, Pavel
id: 35F78294-F248-11E8-B48F-1D18A9856A87
last_name: Payne
orcid: 0000-0002-2711-9453
- first_name: Lukas
full_name: Geyrhofer, Lukas
last_name: Geyrhofer
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
- first_name: Jonathan P
full_name: Bollback, Jonathan P
id: 2C6FA9CC-F248-11E8-B48F-1D18A9856A87
last_name: Bollback
orcid: 0000-0002-4624-4612
citation:
ama: 'Payne P, Geyrhofer L, Barton NH, Bollback JP. Data from: CRISPR-based herd
immunity limits phage epidemics in bacterial populations. 2018. doi:10.5061/dryad.42n44'
apa: 'Payne, P., Geyrhofer, L., Barton, N. H., & Bollback, J. P. (2018). Data
from: CRISPR-based herd immunity limits phage epidemics in bacterial populations.
Dryad. https://doi.org/10.5061/dryad.42n44'
chicago: 'Payne, Pavel, Lukas Geyrhofer, Nicholas H Barton, and Jonathan P Bollback.
“Data from: CRISPR-Based Herd Immunity Limits Phage Epidemics in Bacterial Populations.”
Dryad, 2018. https://doi.org/10.5061/dryad.42n44.'
ieee: 'P. Payne, L. Geyrhofer, N. H. Barton, and J. P. Bollback, “Data from: CRISPR-based
herd immunity limits phage epidemics in bacterial populations.” Dryad, 2018.'
ista: 'Payne P, Geyrhofer L, Barton NH, Bollback JP. 2018. Data from: CRISPR-based
herd immunity limits phage epidemics in bacterial populations, Dryad, 10.5061/dryad.42n44.'
mla: 'Payne, Pavel, et al. Data from: CRISPR-Based Herd Immunity Limits Phage
Epidemics in Bacterial Populations. Dryad, 2018, doi:10.5061/dryad.42n44.'
short: P. Payne, L. Geyrhofer, N.H. Barton, J.P. Bollback, (2018).
date_created: 2021-08-09T13:10:02Z
date_published: 2018-03-12T00:00:00Z
date_updated: 2023-09-11T12:49:17Z
day: '12'
department:
- _id: NiBa
- _id: JoBo
doi: 10.5061/dryad.42n44
main_file_link:
- open_access: '1'
url: https://doi.org/10.5061/dryad.42n44
month: '03'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
record:
- id: '423'
relation: used_in_publication
status: public
status: public
title: 'Data from: CRISPR-based herd immunity limits phage epidemics in bacterial
populations'
type: research_data_reference
user_id: 6785fbc1-c503-11eb-8a32-93094b40e1cf
year: '2018'
...
---
_id: '616'
abstract:
- lang: eng
text: Social insects protect their colonies from infectious disease through collective
defences that result in social immunity. In ants, workers first try to prevent
infection of colony members. Here, we show that if this fails and a pathogen establishes
an infection, ants employ an efficient multicomponent behaviour − "destructive
disinfection" − to prevent further spread of disease through the colony.
Ants specifically target infected pupae during the pathogen's non-contagious incubation
period, relying on chemical 'sickness cues' emitted by pupae. They then remove
the pupal cocoon, perforate its cuticle and administer antimicrobial poison, which
enters the body and prevents pathogen replication from the inside out. Like the
immune system of a body that specifically targets and eliminates infected cells,
this social immunity measure sacrifices infected brood to stop the pathogen completing
its lifecycle, thus protecting the rest of the colony. Hence, the same principles
of disease defence apply at different levels of biological organisation.
article_number: e32073
article_processing_charge: Yes
author:
- first_name: Christopher
full_name: Pull, Christopher
id: 3C7F4840-F248-11E8-B48F-1D18A9856A87
last_name: Pull
orcid: 0000-0003-1122-3982
- first_name: Line V
full_name: Ugelvig, Line V
id: 3DC97C8E-F248-11E8-B48F-1D18A9856A87
last_name: Ugelvig
orcid: 0000-0003-1832-8883
- first_name: Florian
full_name: Wiesenhofer, Florian
id: 39523C54-F248-11E8-B48F-1D18A9856A87
last_name: Wiesenhofer
- first_name: Anna V
full_name: Grasse, Anna V
id: 406F989C-F248-11E8-B48F-1D18A9856A87
last_name: Grasse
- first_name: Simon
full_name: Tragust, Simon
id: 35A7A418-F248-11E8-B48F-1D18A9856A87
last_name: Tragust
- first_name: Thomas
full_name: Schmitt, Thomas
last_name: Schmitt
- first_name: Mark
full_name: Brown, Mark
last_name: Brown
- first_name: Sylvia
full_name: Cremer, Sylvia
id: 2F64EC8C-F248-11E8-B48F-1D18A9856A87
last_name: Cremer
orcid: 0000-0002-2193-3868
citation:
ama: Pull C, Ugelvig LV, Wiesenhofer F, et al. Destructive disinfection of infected
brood prevents systemic disease spread in ant colonies. eLife. 2018;7.
doi:10.7554/eLife.32073
apa: Pull, C., Ugelvig, L. V., Wiesenhofer, F., Grasse, A. V., Tragust, S., Schmitt,
T., … Cremer, S. (2018). Destructive disinfection of infected brood prevents systemic
disease spread in ant colonies. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.32073
chicago: Pull, Christopher, Line V Ugelvig, Florian Wiesenhofer, Anna V Grasse,
Simon Tragust, Thomas Schmitt, Mark Brown, and Sylvia Cremer. “Destructive Disinfection
of Infected Brood Prevents Systemic Disease Spread in Ant Colonies.” ELife.
eLife Sciences Publications, 2018. https://doi.org/10.7554/eLife.32073.
ieee: C. Pull et al., “Destructive disinfection of infected brood prevents
systemic disease spread in ant colonies,” eLife, vol. 7. eLife Sciences
Publications, 2018.
ista: Pull C, Ugelvig LV, Wiesenhofer F, Grasse AV, Tragust S, Schmitt T, Brown
M, Cremer S. 2018. Destructive disinfection of infected brood prevents systemic
disease spread in ant colonies. eLife. 7, e32073.
mla: Pull, Christopher, et al. “Destructive Disinfection of Infected Brood Prevents
Systemic Disease Spread in Ant Colonies.” ELife, vol. 7, e32073, eLife
Sciences Publications, 2018, doi:10.7554/eLife.32073.
short: C. Pull, L.V. Ugelvig, F. Wiesenhofer, A.V. Grasse, S. Tragust, T. Schmitt,
M. Brown, S. Cremer, ELife 7 (2018).
date_created: 2018-12-11T11:47:31Z
date_published: 2018-01-09T00:00:00Z
date_updated: 2023-09-11T12:54:26Z
day: '09'
ddc:
- '570'
- '590'
department:
- _id: SyCr
doi: 10.7554/eLife.32073
ec_funded: 1
external_id:
isi:
- '000419601300001'
file:
- access_level: open_access
checksum: 540f941e8d3530a9441e4affd94f07d7
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:10:43Z
date_updated: 2020-07-14T12:47:20Z
file_id: '4832'
file_name: IST-2018-978-v1+1_elife-32073-v1.pdf
file_size: 1435585
relation: main_file
file_date_updated: 2020-07-14T12:47:20Z
has_accepted_license: '1'
intvolume: ' 7'
isi: 1
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 25DC711C-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '243071'
name: 'Social Vaccination in Ant Colonies: from Individual Mechanisms to Society
Effects'
- _id: 25DDF0F0-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '302004'
name: 'Pathogen Detectors Collective disease defence and pathogen detection abilities
in ant societies: a chemo-neuro-immunological approach'
publication: eLife
publication_status: published
publisher: eLife Sciences Publications
publist_id: '7188'
pubrep_id: '978'
quality_controlled: '1'
related_material:
record:
- id: '819'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Destructive disinfection of infected brood prevents systemic disease spread
in ant colonies
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 7
year: '2018'
...
---
_id: '132'
abstract:
- lang: eng
text: Pancreas development involves a coordinated process in which an early phase
of cell segregation is followed by a longer phase of lineage restriction, expansion,
and tissue remodeling. By combining clonal tracing and whole-mount reconstruction
with proliferation kinetics and single-cell transcriptional profiling, we define
the functional basis of pancreas morphogenesis. We show that the large-scale organization
of mouse pancreas can be traced to the activity of self-renewing precursors positioned
at the termini of growing ducts, which act collectively to drive serial rounds
of stochastic ductal bifurcation balanced by termination. During this phase of
branching morphogenesis, multipotent precursors become progressively fate-restricted,
giving rise to self-renewing acinar-committed precursors that are conveyed with
growing ducts, as well as ductal progenitors that expand the trailing ducts and
give rise to delaminating endocrine cells. These findings define quantitatively
how the functional behavior and lineage progression of precursor pools determine
the large-scale patterning of pancreatic sub-compartments.
acknowledgement: E.H. is funded by a Junior Research Fellowship from Trinity College,
Cam-bridge, a Sir Henry Wellcome Fellowship from the Wellcome Trust, and theBettencourt-Schueller
Young Researcher Prize for support.
article_processing_charge: No
article_type: original
author:
- first_name: Magdalena
full_name: Sznurkowska, Magdalena
last_name: Sznurkowska
- first_name: Edouard B
full_name: Hannezo, Edouard B
id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
last_name: Hannezo
orcid: 0000-0001-6005-1561
- first_name: Roberta
full_name: Azzarelli, Roberta
last_name: Azzarelli
- first_name: Steffen
full_name: Rulands, Steffen
last_name: Rulands
- first_name: Sonia
full_name: Nestorowa, Sonia
last_name: Nestorowa
- first_name: Christopher
full_name: Hindley, Christopher
last_name: Hindley
- first_name: Jennifer
full_name: Nichols, Jennifer
last_name: Nichols
- first_name: Berthold
full_name: Göttgens, Berthold
last_name: Göttgens
- first_name: Meritxell
full_name: Huch, Meritxell
last_name: Huch
- first_name: Anna
full_name: Philpott, Anna
last_name: Philpott
- first_name: Benjamin
full_name: Simons, Benjamin
last_name: Simons
citation:
ama: Sznurkowska M, Hannezo EB, Azzarelli R, et al. Defining lineage potential and
fate behavior of precursors during pancreas development. Developmental Cell.
2018;46(3):360-375. doi:10.1016/j.devcel.2018.06.028
apa: Sznurkowska, M., Hannezo, E. B., Azzarelli, R., Rulands, S., Nestorowa, S.,
Hindley, C., … Simons, B. (2018). Defining lineage potential and fate behavior
of precursors during pancreas development. Developmental Cell. Cell Press.
https://doi.org/10.1016/j.devcel.2018.06.028
chicago: Sznurkowska, Magdalena, Edouard B Hannezo, Roberta Azzarelli, Steffen Rulands,
Sonia Nestorowa, Christopher Hindley, Jennifer Nichols, et al. “Defining Lineage
Potential and Fate Behavior of Precursors during Pancreas Development.” Developmental
Cell. Cell Press, 2018. https://doi.org/10.1016/j.devcel.2018.06.028.
ieee: M. Sznurkowska et al., “Defining lineage potential and fate behavior
of precursors during pancreas development,” Developmental Cell, vol. 46,
no. 3. Cell Press, pp. 360–375, 2018.
ista: Sznurkowska M, Hannezo EB, Azzarelli R, Rulands S, Nestorowa S, Hindley C,
Nichols J, Göttgens B, Huch M, Philpott A, Simons B. 2018. Defining lineage potential
and fate behavior of precursors during pancreas development. Developmental Cell.
46(3), 360–375.
mla: Sznurkowska, Magdalena, et al. “Defining Lineage Potential and Fate Behavior
of Precursors during Pancreas Development.” Developmental Cell, vol. 46,
no. 3, Cell Press, 2018, pp. 360–75, doi:10.1016/j.devcel.2018.06.028.
short: M. Sznurkowska, E.B. Hannezo, R. Azzarelli, S. Rulands, S. Nestorowa, C.
Hindley, J. Nichols, B. Göttgens, M. Huch, A. Philpott, B. Simons, Developmental
Cell 46 (2018) 360–375.
date_created: 2018-12-11T11:44:48Z
date_published: 2018-08-06T00:00:00Z
date_updated: 2023-09-11T12:52:41Z
day: '06'
ddc:
- '570'
department:
- _id: EdHa
doi: 10.1016/j.devcel.2018.06.028
external_id:
isi:
- '000441327300012'
file:
- access_level: open_access
checksum: 78d2062b9e3c3b90fe71545aeb6d2f65
content_type: application/pdf
creator: dernst
date_created: 2018-12-17T10:49:49Z
date_updated: 2020-07-14T12:44:43Z
file_id: '5694'
file_name: 2018_DevelopmentalCell_Sznurkowska.pdf
file_size: 8948384
relation: main_file
file_date_updated: 2020-07-14T12:44:43Z
has_accepted_license: '1'
intvolume: ' 46'
isi: 1
issue: '3'
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 360 - 375
publication: Developmental Cell
publication_status: published
publisher: Cell Press
publist_id: '7791'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Defining lineage potential and fate behavior of precursors during pancreas
development
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 46
year: '2018'
...
---
_id: '42'
abstract:
- lang: eng
text: Seeds derive from ovules upon fertilization and therefore the total number
of ovules determines the final seed yield, a fundamental trait in crop plants.
Among the factors that co-ordinate the process of ovule formation, the transcription
factors CUP-SHAPED COTYLEDON 1 (CUC1) and CUC2 and the hormone cytokinin (CK)
have a particularly prominent role. Indeed, the absence of both CUC1 and CUC2
causes a severe reduction in ovule number, a phenotype that can be rescued by
CK treatment. In this study, we combined CK quantification with an integrative
genome-wide target identification approach to select Arabidopsis genes regulated
by CUCs that are also involved in CK metabolism. We focused our attention on the
functional characterization of UDP-GLUCOSYL TRANSFERASE 85A3 (UGT85A3) and UGT73C1,
which are up-regulated in the absence of CUC1 and CUC2 and encode enzymes able
to catalyse CK inactivation by O-glucosylation. Our results demonstrate a role
for these UGTs as a link between CUCs and CK homeostasis, and highlight the importance
of CUCs and CKs in the determination of seed yield.
acknowledgement: This work was funded by the Ministry of Education, Youth and Sports
of the Czech Republic through the National Program of Sustainability (grant no.
LO1204).
article_processing_charge: No
author:
- first_name: Mara
full_name: Cucinotta, Mara
last_name: Cucinotta
- first_name: Silvia
full_name: Manrique, Silvia
last_name: Manrique
- first_name: Candela
full_name: Cuesta, Candela
id: 33A3C818-F248-11E8-B48F-1D18A9856A87
last_name: Cuesta
orcid: 0000-0003-1923-2410
- first_name: Eva
full_name: Benková, Eva
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
- first_name: Ondřej
full_name: Novák, Ondřej
last_name: Novák
- first_name: Lucia
full_name: Colombo, Lucia
last_name: Colombo
citation:
ama: Cucinotta M, Manrique S, Cuesta C, Benková E, Novák O, Colombo L. Cup-shaped
Cotyledon1 (CUC1) and CU2 regulate cytokinin homeostasis to determine ovule number
in arabidopsis. Journal of Experimental Botany. 2018;69(21):5169-5176.
doi:10.1093/jxb/ery281
apa: Cucinotta, M., Manrique, S., Cuesta, C., Benková, E., Novák, O., & Colombo,
L. (2018). Cup-shaped Cotyledon1 (CUC1) and CU2 regulate cytokinin homeostasis
to determine ovule number in arabidopsis. Journal of Experimental Botany.
Oxford University Press. https://doi.org/10.1093/jxb/ery281
chicago: Cucinotta, Mara, Silvia Manrique, Candela Cuesta, Eva Benková, Ondřej Novák,
and Lucia Colombo. “Cup-Shaped Cotyledon1 (CUC1) and CU2 Regulate Cytokinin Homeostasis
to Determine Ovule Number in Arabidopsis.” Journal of Experimental Botany.
Oxford University Press, 2018. https://doi.org/10.1093/jxb/ery281.
ieee: M. Cucinotta, S. Manrique, C. Cuesta, E. Benková, O. Novák, and L. Colombo,
“Cup-shaped Cotyledon1 (CUC1) and CU2 regulate cytokinin homeostasis to determine
ovule number in arabidopsis,” Journal of Experimental Botany, vol. 69,
no. 21. Oxford University Press, pp. 5169–5176, 2018.
ista: Cucinotta M, Manrique S, Cuesta C, Benková E, Novák O, Colombo L. 2018. Cup-shaped
Cotyledon1 (CUC1) and CU2 regulate cytokinin homeostasis to determine ovule number
in arabidopsis. Journal of Experimental Botany. 69(21), 5169–5176.
mla: Cucinotta, Mara, et al. “Cup-Shaped Cotyledon1 (CUC1) and CU2 Regulate Cytokinin
Homeostasis to Determine Ovule Number in Arabidopsis.” Journal of Experimental
Botany, vol. 69, no. 21, Oxford University Press, 2018, pp. 5169–76, doi:10.1093/jxb/ery281.
short: M. Cucinotta, S. Manrique, C. Cuesta, E. Benková, O. Novák, L. Colombo, Journal
of Experimental Botany 69 (2018) 5169–5176.
date_created: 2018-12-11T11:44:19Z
date_published: 2018-07-26T00:00:00Z
date_updated: 2023-09-11T12:52:03Z
day: '26'
ddc:
- '575'
department:
- _id: EvBe
doi: 10.1093/jxb/ery281
external_id:
isi:
- '000448163900015'
file:
- access_level: open_access
checksum: ca3b6711040b1662488aeb3d1f961f13
content_type: application/pdf
creator: dernst
date_created: 2018-12-17T10:44:16Z
date_updated: 2020-07-14T12:46:25Z
file_id: '5691'
file_name: 2018_JournalExperimBotany_Cucinotta.pdf
file_size: 1292128
relation: main_file
file_date_updated: 2020-07-14T12:46:25Z
has_accepted_license: '1'
intvolume: ' 69'
isi: 1
issue: '21'
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 5169 - 5176
publication: Journal of Experimental Botany
publication_status: published
publisher: Oxford University Press
publist_id: '8012'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Cup-shaped Cotyledon1 (CUC1) and CU2 regulate cytokinin homeostasis to determine
ovule number in arabidopsis
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 69
year: '2018'
...
---
_id: '46'
abstract:
- lang: eng
text: We analyze a disordered central spin model, where a central spin interacts
equally with each spin in a periodic one-dimensional (1D) random-field Heisenberg
chain. If the Heisenberg chain is initially in the many-body localized (MBL) phase,
we find that the coupling to the central spin suffices to delocalize the chain
for a substantial range of coupling strengths. We calculate the phase diagram
of the model and identify the phase boundary between the MBL and ergodic phase.
Within the localized phase, the central spin significantly enhances the rate of
the logarithmic entanglement growth and its saturation value. We attribute the
increase in entanglement entropy to a nonextensive enhancement of magnetization
fluctuations induced by the central spin. Finally, we demonstrate that correlation
functions of the central spin can be utilized to distinguish between MBL and ergodic
phases of the 1D chain. Hence, we propose the use of a central spin as a possible
experimental probe to identify the MBL phase.
acknowledgement: F.P. acknowledges the sup- port of the DFG Research Unit FOR 1807
through Grants No. PO 1370/2-1 and No. TRR80, the Nanosystems Initiative Munich
(NIM) by the German Excellence Initiative, and the European Research Council (ERC)
under the European Union’s Horizon 2020 research and innovation programme (Grant
Agreement No. 771537). N.Y.Y. acknowledges support from the NSF (PHY-1654740), the
ARO STIR program, and a Google research award.
article_number: '161122'
article_processing_charge: No
article_type: original
author:
- first_name: Daniel
full_name: Hetterich, Daniel
last_name: Hetterich
- first_name: Norman
full_name: Yao, Norman
last_name: Yao
- first_name: Maksym
full_name: Serbyn, Maksym
id: 47809E7E-F248-11E8-B48F-1D18A9856A87
last_name: Serbyn
orcid: 0000-0002-2399-5827
- first_name: Frank
full_name: Pollmann, Frank
last_name: Pollmann
- first_name: Björn
full_name: Trauzettel, Björn
last_name: Trauzettel
citation:
ama: Hetterich D, Yao N, Serbyn M, Pollmann F, Trauzettel B. Detection and characterization
of many-body localization in central spin models. Physical Review B. 2018;98(16).
doi:10.1103/PhysRevB.98.161122
apa: Hetterich, D., Yao, N., Serbyn, M., Pollmann, F., & Trauzettel, B. (2018).
Detection and characterization of many-body localization in central spin models.
Physical Review B. American Physical Society. https://doi.org/10.1103/PhysRevB.98.161122
chicago: Hetterich, Daniel, Norman Yao, Maksym Serbyn, Frank Pollmann, and Björn
Trauzettel. “Detection and Characterization of Many-Body Localization in Central
Spin Models.” Physical Review B. American Physical Society, 2018. https://doi.org/10.1103/PhysRevB.98.161122.
ieee: D. Hetterich, N. Yao, M. Serbyn, F. Pollmann, and B. Trauzettel, “Detection
and characterization of many-body localization in central spin models,” Physical
Review B, vol. 98, no. 16. American Physical Society, 2018.
ista: Hetterich D, Yao N, Serbyn M, Pollmann F, Trauzettel B. 2018. Detection and
characterization of many-body localization in central spin models. Physical Review
B. 98(16), 161122.
mla: Hetterich, Daniel, et al. “Detection and Characterization of Many-Body Localization
in Central Spin Models.” Physical Review B, vol. 98, no. 16, 161122, American
Physical Society, 2018, doi:10.1103/PhysRevB.98.161122.
short: D. Hetterich, N. Yao, M. Serbyn, F. Pollmann, B. Trauzettel, Physical Review
B 98 (2018).
date_created: 2018-12-11T11:44:20Z
date_published: 2018-10-15T00:00:00Z
date_updated: 2023-09-11T12:55:03Z
day: '15'
department:
- _id: MaSe
doi: 10.1103/PhysRevB.98.161122
external_id:
arxiv:
- '1806.08316'
isi:
- '000448596500002'
intvolume: ' 98'
isi: 1
issue: '16'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1806.08316
month: '10'
oa: 1
oa_version: Preprint
publication: Physical Review B
publication_status: published
publisher: American Physical Society
publist_id: '8008'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Detection and characterization of many-body localization in central spin models
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 98
year: '2018'
...
---
_id: '308'
abstract:
- lang: eng
text: Migrating cells penetrate tissue barriers during development, inflammatory
responses, and tumor metastasis. We study if migration in vivo in such three-dimensionally
confined environments requires changes in the mechanical properties of the surrounding
cells using embryonic Drosophila melanogaster hemocytes, also called macrophages,
as a model. We find that macrophage invasion into the germband through transient
separation of the apposing ectoderm and mesoderm requires cell deformations and
reductions in apical tension in the ectoderm. Interestingly, the genetic pathway
governing these mechanical shifts acts downstream of the only known tumor necrosis
factor superfamily member in Drosophila, Eiger, and its receptor, Grindelwald.
Eiger-Grindelwald signaling reduces levels of active Myosin in the germband ectodermal
cortex through the localization of a Crumbs complex component, Patj (Pals-1-associated
tight junction protein). We therefore elucidate a distinct molecular pathway that
controls tissue tension and demonstrate the importance of such regulation for
invasive migration in vivo.
acknowledged_ssus:
- _id: SSU
article_processing_charge: No
article_type: original
author:
- first_name: Aparna
full_name: Ratheesh, Aparna
id: 2F064CFE-F248-11E8-B48F-1D18A9856A87
last_name: Ratheesh
orcid: 0000-0001-7190-0776
- first_name: Julia
full_name: Biebl, Julia
id: 3CCBB46E-F248-11E8-B48F-1D18A9856A87
last_name: Biebl
- first_name: Michael
full_name: Smutny, Michael
last_name: Smutny
- first_name: Jana
full_name: Veselá, Jana
id: 433253EE-F248-11E8-B48F-1D18A9856A87
last_name: Veselá
- first_name: Ekaterina
full_name: Papusheva, Ekaterina
id: 41DB591E-F248-11E8-B48F-1D18A9856A87
last_name: Papusheva
- first_name: Gabriel
full_name: Krens, Gabriel
id: 2B819732-F248-11E8-B48F-1D18A9856A87
last_name: Krens
orcid: 0000-0003-4761-5996
- first_name: Walter
full_name: Kaufmann, Walter
id: 3F99E422-F248-11E8-B48F-1D18A9856A87
last_name: Kaufmann
orcid: 0000-0001-9735-5315
- first_name: Attila
full_name: György, Attila
id: 3BCEDBE0-F248-11E8-B48F-1D18A9856A87
last_name: György
orcid: 0000-0002-1819-198X
- first_name: Alessandra M
full_name: Casano, Alessandra M
id: 3DBA3F4E-F248-11E8-B48F-1D18A9856A87
last_name: Casano
orcid: 0000-0002-6009-6804
- first_name: Daria E
full_name: Siekhaus, Daria E
id: 3D224B9E-F248-11E8-B48F-1D18A9856A87
last_name: Siekhaus
orcid: 0000-0001-8323-8353
citation:
ama: Ratheesh A, Bicher J, Smutny M, et al. Drosophila TNF modulates tissue tension
in the embryo to facilitate macrophage invasive migration. Developmental Cell.
2018;45(3):331-346. doi:10.1016/j.devcel.2018.04.002
apa: Ratheesh, A., Bicher, J., Smutny, M., Veselá, J., Papusheva, E., Krens, G.,
… Siekhaus, D. E. (2018). Drosophila TNF modulates tissue tension in the embryo
to facilitate macrophage invasive migration. Developmental Cell. Elsevier.
https://doi.org/10.1016/j.devcel.2018.04.002
chicago: Ratheesh, Aparna, Julia Bicher, Michael Smutny, Jana Veselá, Ekaterina
Papusheva, Gabriel Krens, Walter Kaufmann, Attila György, Alessandra M Casano,
and Daria E Siekhaus. “Drosophila TNF Modulates Tissue Tension in the Embryo to
Facilitate Macrophage Invasive Migration.” Developmental Cell. Elsevier,
2018. https://doi.org/10.1016/j.devcel.2018.04.002.
ieee: A. Ratheesh et al., “Drosophila TNF modulates tissue tension in the
embryo to facilitate macrophage invasive migration,” Developmental Cell,
vol. 45, no. 3. Elsevier, pp. 331–346, 2018.
ista: Ratheesh A, Bicher J, Smutny M, Veselá J, Papusheva E, Krens G, Kaufmann W,
György A, Casano AM, Siekhaus DE. 2018. Drosophila TNF modulates tissue tension
in the embryo to facilitate macrophage invasive migration. Developmental Cell.
45(3), 331–346.
mla: Ratheesh, Aparna, et al. “Drosophila TNF Modulates Tissue Tension in the Embryo
to Facilitate Macrophage Invasive Migration.” Developmental Cell, vol.
45, no. 3, Elsevier, 2018, pp. 331–46, doi:10.1016/j.devcel.2018.04.002.
short: A. Ratheesh, J. Bicher, M. Smutny, J. Veselá, E. Papusheva, G. Krens, W.
Kaufmann, A. György, A.M. Casano, D.E. Siekhaus, Developmental Cell 45 (2018)
331–346.
date_created: 2018-12-11T11:45:44Z
date_published: 2018-05-07T00:00:00Z
date_updated: 2023-09-11T13:22:13Z
day: '07'
department:
- _id: DaSi
- _id: CaHe
- _id: Bio
- _id: EM-Fac
- _id: MiSi
doi: 10.1016/j.devcel.2018.04.002
ec_funded: 1
external_id:
isi:
- '000432461400009'
pmid:
- '29738712'
intvolume: ' 45'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.devcel.2018.04.002
month: '05'
oa: 1
oa_version: Published Version
page: 331 - 346
pmid: 1
project:
- _id: 253B6E48-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P29638
name: Drosophila TNFa´s Funktion in Immunzellen
- _id: 2536F660-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '334077'
name: Investigating the role of transporters in invasive migration through junctions
publication: Developmental Cell
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
link:
- description: News on IST Homepage
relation: press_release
url: https://ist.ac.at/en/news/cells-change-tension-to-make-tissue-barriers-easier-to-get-through/
scopus_import: '1'
status: public
title: Drosophila TNF modulates tissue tension in the embryo to facilitate macrophage
invasive migration
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 45
year: '2018'
...
---
_id: '17'
abstract:
- lang: eng
text: Creeping flow of polymeric fluid without inertia exhibits elastic instabilities
and elastic turbulence accompanied by drag enhancement due to elastic stress produced
by flow-stretched polymers. However, in inertia-dominated flow at high Re and
low fluid elasticity El, a reduction in turbulent frictional drag is caused by
an intricate competition between inertial and elastic stresses. Here we explore
the effect of inertia on the stability of viscoelastic flow in a broad range of
control parameters El and (Re,Wi). We present the stability diagram of observed
flow regimes in Wi-Re coordinates and find that the instabilities' onsets show
an unexpectedly nonmonotonic dependence on El. Further, three distinct regions
in the diagram are identified based on El. Strikingly, for high-elasticity fluids
we discover a complete relaminarization of flow at Reynolds number in the range
of 1 to 10, different from a well-known turbulent drag reduction. These counterintuitive
effects may be explained by a finite polymer extensibility and a suppression of
vorticity at high Wi. Our results call for further theoretical and numerical development
to uncover the role of inertial effect on elastic turbulence in a viscoelastic
flow.
article_number: '103302 '
article_processing_charge: No
author:
- first_name: Atul
full_name: Varshney, Atul
id: 2A2006B2-F248-11E8-B48F-1D18A9856A87
last_name: Varshney
orcid: 0000-0002-3072-5999
- first_name: Victor
full_name: Steinberg, Victor
last_name: Steinberg
citation:
ama: Varshney A, Steinberg V. Drag enhancement and drag reduction in viscoelastic
flow. Physical Review Fluids. 2018;3(10). doi:10.1103/PhysRevFluids.3.103302
apa: Varshney, A., & Steinberg, V. (2018). Drag enhancement and drag reduction
in viscoelastic flow. Physical Review Fluids. American Physical Society.
https://doi.org/10.1103/PhysRevFluids.3.103302
chicago: Varshney, Atul, and Victor Steinberg. “Drag Enhancement and Drag Reduction
in Viscoelastic Flow.” Physical Review Fluids. American Physical Society,
2018. https://doi.org/10.1103/PhysRevFluids.3.103302.
ieee: A. Varshney and V. Steinberg, “Drag enhancement and drag reduction in viscoelastic
flow,” Physical Review Fluids, vol. 3, no. 10. American Physical Society,
2018.
ista: Varshney A, Steinberg V. 2018. Drag enhancement and drag reduction in viscoelastic
flow. Physical Review Fluids. 3(10), 103302.
mla: Varshney, Atul, and Victor Steinberg. “Drag Enhancement and Drag Reduction
in Viscoelastic Flow.” Physical Review Fluids, vol. 3, no. 10, 103302,
American Physical Society, 2018, doi:10.1103/PhysRevFluids.3.103302.
short: A. Varshney, V. Steinberg, Physical Review Fluids 3 (2018).
date_created: 2018-12-11T11:44:11Z
date_published: 2018-10-15T00:00:00Z
date_updated: 2023-09-11T12:59:28Z
day: '15'
ddc:
- '532'
department:
- _id: BjHo
doi: 10.1103/PhysRevFluids.3.103302
ec_funded: 1
external_id:
isi:
- '000447311500001'
file:
- access_level: open_access
checksum: e1445be33e8165114e96246275600750
content_type: application/pdf
creator: system
date_created: 2018-12-12T10:10:14Z
date_updated: 2020-07-14T12:45:12Z
file_id: '4800'
file_name: IST-2018-1061-v1+1_PhysRevFluids.3.103302.pdf
file_size: 1409040
relation: main_file
file_date_updated: 2020-07-14T12:45:12Z
has_accepted_license: '1'
intvolume: ' 3'
isi: 1
issue: '10'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Physical Review Fluids
publication_status: published
publisher: American Physical Society
publist_id: '8038'
pubrep_id: '1061'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Drag enhancement and drag reduction in viscoelastic flow
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 3
year: '2018'
...
---
_id: '281'
abstract:
- lang: eng
text: 'Although cells respond specifically to environments, how environmental identity
is encoded intracellularly is not understood. Here, we study this organization
of information in budding yeast by estimating the mutual information between environmental
transitions and the dynamics of nuclear translocation for 10 transcription factors.
Our method of estimation is general, scalable, and based on decoding from single
cells. The dynamics of the transcription factors are necessary to encode the highest
amounts of extracellular information, and we show that information is transduced
through two channels: Generalists (Msn2/4, Tod6 and Dot6, Maf1, and Sfp1) can
encode the nature of multiple stresses, but only if stress is high; specialists
(Hog1, Yap1, and Mig1/2) encode one particular stress, but do so more quickly
and for a wider range of magnitudes. In particular, Dot6 encodes almost as much
information as Msn2, the master regulator of the environmental stress response.
Each transcription factor reports differently, and it is only their collective
behavior that distinguishes between multiple environmental states. Changes in
the dynamics of the localization of transcription factors thus constitute a precise,
distributed internal representation of extracellular change. We predict that such
multidimensional representations are common in cellular decision-making.'
acknowledgement: This work was supported by the Biotechnology and Biological Sciences
Research Council (J.M.J.P., I.F., and P.S.S.), the Engineering and Physical Sciences
Research Council (EPSRC) (A.A.G.), and Austrian Science Fund Grant FWF P28844 (to
G.T.).
article_processing_charge: No
article_type: original
author:
- first_name: Alejandro
full_name: Granados, Alejandro
last_name: Granados
- first_name: Julian
full_name: Pietsch, Julian
last_name: Pietsch
- first_name: Sarah A
full_name: Cepeda Humerez, Sarah A
id: 3DEE19A4-F248-11E8-B48F-1D18A9856A87
last_name: Cepeda Humerez
- first_name: Isebail
full_name: Farquhar, Isebail
last_name: Farquhar
- first_name: Gasper
full_name: Tkacik, Gasper
id: 3D494DCA-F248-11E8-B48F-1D18A9856A87
last_name: Tkacik
orcid: 0000-0002-6699-1455
- first_name: Peter
full_name: Swain, Peter
last_name: Swain
citation:
ama: Granados A, Pietsch J, Cepeda Humerez SA, Farquhar I, Tkačik G, Swain P. Distributed
and dynamic intracellular organization of extracellular information. PNAS.
2018;115(23):6088-6093. doi:10.1073/pnas.1716659115
apa: Granados, A., Pietsch, J., Cepeda Humerez, S. A., Farquhar, I., Tkačik, G.,
& Swain, P. (2018). Distributed and dynamic intracellular organization of
extracellular information. PNAS. National Academy of Sciences. https://doi.org/10.1073/pnas.1716659115
chicago: Granados, Alejandro, Julian Pietsch, Sarah A Cepeda Humerez, Isebail Farquhar,
Gašper Tkačik, and Peter Swain. “Distributed and Dynamic Intracellular Organization
of Extracellular Information.” PNAS. National Academy of Sciences, 2018.
https://doi.org/10.1073/pnas.1716659115.
ieee: A. Granados, J. Pietsch, S. A. Cepeda Humerez, I. Farquhar, G. Tkačik, and
P. Swain, “Distributed and dynamic intracellular organization of extracellular
information,” PNAS, vol. 115, no. 23. National Academy of Sciences, pp.
6088–6093, 2018.
ista: Granados A, Pietsch J, Cepeda Humerez SA, Farquhar I, Tkačik G, Swain P. 2018.
Distributed and dynamic intracellular organization of extracellular information.
PNAS. 115(23), 6088–6093.
mla: Granados, Alejandro, et al. “Distributed and Dynamic Intracellular Organization
of Extracellular Information.” PNAS, vol. 115, no. 23, National Academy
of Sciences, 2018, pp. 6088–93, doi:10.1073/pnas.1716659115.
short: A. Granados, J. Pietsch, S.A. Cepeda Humerez, I. Farquhar, G. Tkačik, P.
Swain, PNAS 115 (2018) 6088–6093.
date_created: 2018-12-11T11:45:35Z
date_published: 2018-06-05T00:00:00Z
date_updated: 2023-09-11T12:58:24Z
day: '05'
department:
- _id: GaTk
doi: 10.1073/pnas.1716659115
external_id:
isi:
- '000434114900071'
pmid:
- '29784812'
intvolume: ' 115'
isi: 1
issue: '23'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.biorxiv.org/content/early/2017/09/21/192039
month: '06'
oa: 1
oa_version: Preprint
page: 6088 - 6093
pmid: 1
project:
- _id: 254E9036-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P28844-B27
name: Biophysics of information processing in gene regulation
publication: PNAS
publication_status: published
publisher: National Academy of Sciences
publist_id: '7618'
quality_controlled: '1'
related_material:
record:
- id: '6473'
relation: part_of_dissertation
status: public
scopus_import: '1'
status: public
title: Distributed and dynamic intracellular organization of extracellular information
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 115
year: '2018'
...
---
_id: '620'
abstract:
- lang: eng
text: Clathrin-mediated endocytosis requires the coordinated assembly of various
endocytic proteins and lipids at the plasma membrane. Accumulating evidence demonstrates
a crucial role for phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2) in endocytosis,
but specific roles for PtdIns(4)P other than as the biosynthetic precursor of
PtdIns(4,5)P2 have not been clarified. In this study we investigated the role
of PtdIns(4)P or PtdIns(4,5)P2 in receptor-mediated endocytosis through the construction
of temperature-sensitive (ts) mutants for the PI 4-kinases Stt4p and Pik1p and
the PtdIns(4) 5-kinase Mss4p. Quantitative analyses of endocytosis revealed that
both the stt4(ts)pik1(ts) and mss4(ts) mutants have a severe defect in endocytic
internalization. Live-cell imaging of endocytic protein dynamics in stt4(ts)pik1(ts)
and mss4(ts) mutants revealed that PtdIns(4)P is required for the recruitment
of the alpha-factor receptor Ste2p to clathrin-coated pits whereas PtdIns(4,5)P2
is required for membrane internalization. We also found that the localization
to endocytic sites of the ENTH/ANTH domain-bearing clathrin adaptors, Ent1p/Ent2p
and Yap1801p/Yap1802p, is significantly impaired in the stt4(ts)pik1(ts) mutant,
but not in the mss4(ts) mutant. These results suggest distinct roles in successive
steps for PtdIns(4)P and PtdIns(4,5)P2 during receptor-mediated endocytosis.
article_number: jcs207696
article_processing_charge: No
author:
- first_name: Wataru
full_name: Yamamoto, Wataru
last_name: Yamamoto
- first_name: Suguru
full_name: Wada, Suguru
last_name: Wada
- first_name: Makoto
full_name: Nagano, Makoto
last_name: Nagano
- first_name: Kaito
full_name: Aoshima, Kaito
last_name: Aoshima
- first_name: Daria E
full_name: Siekhaus, Daria E
id: 3D224B9E-F248-11E8-B48F-1D18A9856A87
last_name: Siekhaus
orcid: 0000-0001-8323-8353
- first_name: Junko
full_name: Toshima, Junko
last_name: Toshima
- first_name: Jiro
full_name: Toshima, Jiro
last_name: Toshima
citation:
ama: Yamamoto W, Wada S, Nagano M, et al. Distinct roles for plasma membrane PtdIns
4 P and PtdIns 4 5 P2 during yeast receptor mediated endocytosis. Journal of
Cell Science. 2018;131(1). doi:10.1242/jcs.207696
apa: Yamamoto, W., Wada, S., Nagano, M., Aoshima, K., Siekhaus, D. E., Toshima,
J., & Toshima, J. (2018). Distinct roles for plasma membrane PtdIns 4 P and
PtdIns 4 5 P2 during yeast receptor mediated endocytosis. Journal of Cell Science.
Company of Biologists. https://doi.org/10.1242/jcs.207696
chicago: Yamamoto, Wataru, Suguru Wada, Makoto Nagano, Kaito Aoshima, Daria E Siekhaus,
Junko Toshima, and Jiro Toshima. “Distinct Roles for Plasma Membrane PtdIns 4
P and PtdIns 4 5 P2 during Yeast Receptor Mediated Endocytosis.” Journal of
Cell Science. Company of Biologists, 2018. https://doi.org/10.1242/jcs.207696.
ieee: W. Yamamoto et al., “Distinct roles for plasma membrane PtdIns 4 P
and PtdIns 4 5 P2 during yeast receptor mediated endocytosis,” Journal of Cell
Science, vol. 131, no. 1. Company of Biologists, 2018.
ista: Yamamoto W, Wada S, Nagano M, Aoshima K, Siekhaus DE, Toshima J, Toshima J.
2018. Distinct roles for plasma membrane PtdIns 4 P and PtdIns 4 5 P2 during yeast
receptor mediated endocytosis. Journal of Cell Science. 131(1), jcs207696.
mla: Yamamoto, Wataru, et al. “Distinct Roles for Plasma Membrane PtdIns 4 P and
PtdIns 4 5 P2 during Yeast Receptor Mediated Endocytosis.” Journal of Cell
Science, vol. 131, no. 1, jcs207696, Company of Biologists, 2018, doi:10.1242/jcs.207696.
short: W. Yamamoto, S. Wada, M. Nagano, K. Aoshima, D.E. Siekhaus, J. Toshima, J.
Toshima, Journal of Cell Science 131 (2018).
date_created: 2018-12-11T11:47:32Z
date_published: 2018-01-04T00:00:00Z
date_updated: 2023-09-11T12:57:13Z
day: '04'
department:
- _id: DaSi
doi: 10.1242/jcs.207696
external_id:
isi:
- '000424786900012'
pmid:
- '29192062'
intvolume: ' 131'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.ncbi.nlm.nih.gov/pubmed/29192062
month: '01'
oa: 1
oa_version: Published Version
pmid: 1
publication: Journal of Cell Science
publication_status: published
publisher: Company of Biologists
publist_id: '7184'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Distinct roles for plasma membrane PtdIns 4 P and PtdIns 4 5 P2 during yeast
receptor mediated endocytosis
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 131
year: '2018'
...
---
_id: '182'
abstract:
- lang: eng
text: We describe a new algorithm for the parametric identification problem for
signal temporal logic (STL), stated as follows. Given a densetime real-valued
signal w and a parameterized temporal logic formula φ, compute the subset of the
parameter space that renders the formula satisfied by the signal. Unlike previous
solutions, which were based on search in the parameter space or quantifier elimination,
our procedure works recursively on φ and computes the evolution over time of the
set of valid parameter assignments. This procedure is similar to that of monitoring
or computing the robustness of φ relative to w. Our implementation and experiments
demonstrate that this approach can work well in practice.
alternative_title:
- HSCC Proceedings
article_processing_charge: No
author:
- first_name: Alexey
full_name: Bakhirkin, Alexey
last_name: Bakhirkin
- first_name: Thomas
full_name: Ferrere, Thomas
id: 40960E6E-F248-11E8-B48F-1D18A9856A87
last_name: Ferrere
orcid: 0000-0001-5199-3143
- first_name: Oded
full_name: Maler, Oded
last_name: Maler
citation:
ama: 'Bakhirkin A, Ferrere T, Maler O. Efficient parametric identification for STL.
In: Proceedings of the 21st International Conference on Hybrid Systems.
ACM; 2018:177-186. doi:10.1145/3178126.3178132'
apa: 'Bakhirkin, A., Ferrere, T., & Maler, O. (2018). Efficient parametric identification
for STL. In Proceedings of the 21st International Conference on Hybrid Systems
(pp. 177–186). Porto, Portugal: ACM. https://doi.org/10.1145/3178126.3178132'
chicago: Bakhirkin, Alexey, Thomas Ferrere, and Oded Maler. “Efficient Parametric
Identification for STL.” In Proceedings of the 21st International Conference
on Hybrid Systems, 177–86. ACM, 2018. https://doi.org/10.1145/3178126.3178132.
ieee: A. Bakhirkin, T. Ferrere, and O. Maler, “Efficient parametric identification
for STL,” in Proceedings of the 21st International Conference on Hybrid Systems,
Porto, Portugal, 2018, pp. 177–186.
ista: 'Bakhirkin A, Ferrere T, Maler O. 2018. Efficient parametric identification
for STL. Proceedings of the 21st International Conference on Hybrid Systems. HSCC:
Hybrid Systems: Computation and Control, HSCC Proceedings, , 177–186.'
mla: Bakhirkin, Alexey, et al. “Efficient Parametric Identification for STL.” Proceedings
of the 21st International Conference on Hybrid Systems, ACM, 2018, pp. 177–86,
doi:10.1145/3178126.3178132.
short: A. Bakhirkin, T. Ferrere, O. Maler, in:, Proceedings of the 21st International
Conference on Hybrid Systems, ACM, 2018, pp. 177–186.
conference:
end_date: 2018-04-13
location: Porto, Portugal
name: 'HSCC: Hybrid Systems: Computation and Control'
start_date: 2018-04-11
date_created: 2018-12-11T11:45:04Z
date_published: 2018-04-11T00:00:00Z
date_updated: 2023-09-11T13:30:51Z
day: '11'
ddc:
- '000'
department:
- _id: ToHe
doi: 10.1145/3178126.3178132
external_id:
isi:
- '000474781600020'
file:
- access_level: open_access
checksum: 81eabc96430e84336ea88310ac0a1ad0
content_type: application/pdf
creator: dernst
date_created: 2020-05-14T12:18:29Z
date_updated: 2020-07-14T12:45:17Z
file_id: '7833'
file_name: 2018_HSCC_Bakhirkin.pdf
file_size: 5900421
relation: main_file
file_date_updated: 2020-07-14T12:45:17Z
has_accepted_license: '1'
isi: 1
language:
- iso: eng
month: '04'
oa: 1
oa_version: Submitted Version
page: 177 - 186
project:
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
publication: Proceedings of the 21st International Conference on Hybrid Systems
publication_identifier:
isbn:
- '978-1-4503-5642-8 '
publication_status: published
publisher: ACM
publist_id: '7739'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Efficient parametric identification for STL
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2018'
...
---
_id: '143'
abstract:
- lang: eng
text: 'Vector Addition Systems with States (VASS) provide a well-known and fundamental
model for the analysis of concurrent processes, parameterized systems, and are
also used as abstract models of programs in resource bound analysis. In this paper
we study the problem of obtaining asymptotic bounds on the termination time of
a given VASS. In particular, we focus on the practically important case of obtaining
polynomial bounds on termination time. Our main contributions are as follows:
First, we present a polynomial-time algorithm for deciding whether a given VASS
has a linear asymptotic complexity. We also show that if the complexity of a VASS
is not linear, it is at least quadratic. Second, we classify VASS according to
quantitative properties of their cycles. We show that certain singularities in
these properties are the key reason for non-polynomial asymptotic complexity of
VASS. In absence of singularities, we show that the asymptotic complexity is always
polynomial and of the form Θ(nk), for some integer k d, where d is the dimension
of the VASS. We present a polynomial-time algorithm computing the optimal k. For
general VASS, the same algorithm, which is based on a complete technique for the
construction of ranking functions in VASS, produces a valid lower bound, i.e.,
a k such that the termination complexity is (nk). Our results are based on new
insights into the geometry of VASS dynamics, which hold the potential for further
applicability to VASS analysis.'
alternative_title:
- ACM/IEEE Symposium on Logic in Computer Science
article_processing_charge: No
author:
- first_name: Tomáš
full_name: Brázdil, Tomáš
last_name: Brázdil
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Antonín
full_name: Kučera, Antonín
last_name: Kučera
- first_name: Petr
full_name: Novotny, Petr
id: 3CC3B868-F248-11E8-B48F-1D18A9856A87
last_name: Novotny
- first_name: Dominik
full_name: Velan, Dominik
last_name: Velan
- first_name: Florian
full_name: Zuleger, Florian
last_name: Zuleger
citation:
ama: 'Brázdil T, Chatterjee K, Kučera A, Novotný P, Velan D, Zuleger F. Efficient
algorithms for asymptotic bounds on termination time in VASS. In: Vol F138033.
IEEE; 2018:185-194. doi:10.1145/3209108.3209191'
apa: 'Brázdil, T., Chatterjee, K., Kučera, A., Novotný, P., Velan, D., & Zuleger,
F. (2018). Efficient algorithms for asymptotic bounds on termination time in VASS
(Vol. F138033, pp. 185–194). Presented at the LICS: Logic in Computer Science,
Oxford, United Kingdom: IEEE. https://doi.org/10.1145/3209108.3209191'
chicago: Brázdil, Tomáš, Krishnendu Chatterjee, Antonín Kučera, Petr Novotný, Dominik
Velan, and Florian Zuleger. “Efficient Algorithms for Asymptotic Bounds on Termination
Time in VASS,” F138033:185–94. IEEE, 2018. https://doi.org/10.1145/3209108.3209191.
ieee: 'T. Brázdil, K. Chatterjee, A. Kučera, P. Novotný, D. Velan, and F. Zuleger,
“Efficient algorithms for asymptotic bounds on termination time in VASS,” presented
at the LICS: Logic in Computer Science, Oxford, United Kingdom, 2018, vol. F138033,
pp. 185–194.'
ista: 'Brázdil T, Chatterjee K, Kučera A, Novotný P, Velan D, Zuleger F. 2018. Efficient
algorithms for asymptotic bounds on termination time in VASS. LICS: Logic in Computer
Science, ACM/IEEE Symposium on Logic in Computer Science, vol. F138033, 185–194.'
mla: Brázdil, Tomáš, et al. Efficient Algorithms for Asymptotic Bounds on Termination
Time in VASS. Vol. F138033, IEEE, 2018, pp. 185–94, doi:10.1145/3209108.3209191.
short: T. Brázdil, K. Chatterjee, A. Kučera, P. Novotný, D. Velan, F. Zuleger, in:,
IEEE, 2018, pp. 185–194.
conference:
end_date: 2018-07-12
location: Oxford, United Kingdom
name: 'LICS: Logic in Computer Science'
start_date: 2018-07-09
date_created: 2018-12-11T11:44:51Z
date_published: 2018-07-09T00:00:00Z
date_updated: 2023-09-11T13:23:42Z
day: '09'
department:
- _id: KrCh
doi: 10.1145/3209108.3209191
ec_funded: 1
external_id:
isi:
- '000545262800020'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1804.10985
month: '07'
oa: 1
oa_version: Preprint
page: 185 - 194
project:
- _id: 25892FC0-B435-11E9-9278-68D0E5697425
grant_number: ICT15-003
name: Efficient Algorithms for Computer Aided Verification
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
publication_identifier:
isbn:
- 978-1-4503-5583-4
publication_status: published
publisher: IEEE
publist_id: '7780'
quality_controlled: '1'
scopus_import: '1'
status: public
title: Efficient algorithms for asymptotic bounds on termination time in VASS
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: F138033
year: '2018'
...
---
_id: '273'
abstract:
- lang: eng
text: The accuracy of information retrieval systems is often measured using complex
loss functions such as the average precision (AP) or the normalized discounted
cumulative gain (NDCG). Given a set of positive and negative samples, the parameters
of a retrieval system can be estimated by minimizing these loss functions. However,
the non-differentiability and non-decomposability of these loss functions does
not allow for simple gradient based optimization algorithms. This issue is generally
circumvented by either optimizing a structured hinge-loss upper bound to the loss
function or by using asymptotic methods like the direct-loss minimization framework.
Yet, the high computational complexity of loss-augmented inference, which is necessary
for both the frameworks, prohibits its use in large training data sets. To alleviate
this deficiency, we present a novel quicksort flavored algorithm for a large class
of non-decomposable loss functions. We provide a complete characterization of
the loss functions that are amenable to our algorithm, and show that it includes
both AP and NDCG based loss functions. Furthermore, we prove that no comparison
based algorithm can improve upon the computational complexity of our approach
asymptotically. We demonstrate the effectiveness of our approach in the context
of optimizing the structured hinge loss upper bound of AP and NDCG loss for learning
models for a variety of vision tasks. We show that our approach provides significantly
better results than simpler decomposable loss functions, while requiring a comparable
training time.
article_processing_charge: No
author:
- first_name: Pritish
full_name: Mohapatra, Pritish
last_name: Mohapatra
- first_name: Michal
full_name: Rolinek, Michal
id: 3CB3BC06-F248-11E8-B48F-1D18A9856A87
last_name: Rolinek
- first_name: C V
full_name: Jawahar, C V
last_name: Jawahar
- first_name: Vladimir
full_name: Kolmogorov, Vladimir
id: 3D50B0BA-F248-11E8-B48F-1D18A9856A87
last_name: Kolmogorov
- first_name: M Pawan
full_name: Kumar, M Pawan
last_name: Kumar
citation:
ama: 'Mohapatra P, Rolinek M, Jawahar CV, Kolmogorov V, Kumar MP. Efficient optimization
for rank-based loss functions. In: 2018 IEEE/CVF Conference on Computer Vision
and Pattern Recognition. IEEE; 2018:3693-3701. doi:10.1109/cvpr.2018.00389'
apa: 'Mohapatra, P., Rolinek, M., Jawahar, C. V., Kolmogorov, V., & Kumar, M.
P. (2018). Efficient optimization for rank-based loss functions. In 2018 IEEE/CVF
Conference on Computer Vision and Pattern Recognition (pp. 3693–3701). Salt
Lake City, UT, USA: IEEE. https://doi.org/10.1109/cvpr.2018.00389'
chicago: Mohapatra, Pritish, Michal Rolinek, C V Jawahar, Vladimir Kolmogorov, and
M Pawan Kumar. “Efficient Optimization for Rank-Based Loss Functions.” In 2018
IEEE/CVF Conference on Computer Vision and Pattern Recognition, 3693–3701.
IEEE, 2018. https://doi.org/10.1109/cvpr.2018.00389.
ieee: P. Mohapatra, M. Rolinek, C. V. Jawahar, V. Kolmogorov, and M. P. Kumar, “Efficient
optimization for rank-based loss functions,” in 2018 IEEE/CVF Conference on
Computer Vision and Pattern Recognition, Salt Lake City, UT, USA, 2018, pp.
3693–3701.
ista: 'Mohapatra P, Rolinek M, Jawahar CV, Kolmogorov V, Kumar MP. 2018. Efficient
optimization for rank-based loss functions. 2018 IEEE/CVF Conference on Computer
Vision and Pattern Recognition. CVPR: Conference on Computer Vision and Pattern
Recognition, 3693–3701.'
mla: Mohapatra, Pritish, et al. “Efficient Optimization for Rank-Based Loss Functions.”
2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition, IEEE,
2018, pp. 3693–701, doi:10.1109/cvpr.2018.00389.
short: P. Mohapatra, M. Rolinek, C.V. Jawahar, V. Kolmogorov, M.P. Kumar, in:, 2018
IEEE/CVF Conference on Computer Vision and Pattern Recognition, IEEE, 2018, pp.
3693–3701.
conference:
end_date: 2018-06-22
location: Salt Lake City, UT, USA
name: 'CVPR: Conference on Computer Vision and Pattern Recognition'
start_date: 2018-06-18
date_created: 2018-12-11T11:45:33Z
date_published: 2018-06-28T00:00:00Z
date_updated: 2023-09-11T13:24:43Z
day: '28'
department:
- _id: VlKo
doi: 10.1109/cvpr.2018.00389
ec_funded: 1
external_id:
arxiv:
- '1604.08269'
isi:
- '000457843603087'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1604.08269
month: '06'
oa: 1
oa_version: Preprint
page: 3693-3701
project:
- _id: 25FBA906-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '616160'
name: 'Discrete Optimization in Computer Vision: Theory and Practice'
publication: 2018 IEEE/CVF Conference on Computer Vision and Pattern Recognition
publication_identifier:
isbn:
- '9781538664209'
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: Efficient optimization for rank-based loss functions
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2018'
...
---
_id: '289'
abstract:
- lang: eng
text: We report on quantum capacitance measurements of high quality, graphite- and
hexagonal boron nitride encapsulated Bernal stacked trilayer graphene devices.
At zero applied magnetic field, we observe a number of electron density- and electrical
displacement-tuned features in the electronic compressibility associated with
changes in Fermi surface topology. At high displacement field and low density,
strong trigonal warping gives rise to emergent Dirac gullies centered near the
corners of the hexagonal Brillouin and related by three fold rotation symmetry.
At low magnetic fields of B=1.25~T, the gullies manifest as a change in the degeneracy
of the Landau levels from two to three. Weak incompressible states are also observed
at integer filling within these triplets Landau levels, which a Hartree-Fock analysis
indicates are associated with Coulomb-driven nematic phases that spontaneously
break rotation symmetry.
acknowledgement: The experimental work at UCSB was funded by the National Science
Foundation under Grant No. DMR- 1654186. Work at Columbia was supported by the National
Science Foundation under Grant No. DMR- 1507788. K. W. and T. T. acknowledge support
from the Elemental Strategy Initiative conducted by the Ministry of Education, Culture,
Sports, Science and Technology, Japan, and the Japan Society for the Promotion of
Science KAKENHI Grant No. JP15K21722. E. M. S. acknowledges the support of the Elings
Fellowship from the California Nanosystems Institute at the University of California,
Santa Barbara. A. F. Y. acknowledges the support of the David and Lucile Packard
foundation and the Sloan Foundation. Measurements made use of a dilution refrigerator
funded through the Major Research Instrumentation program of the U.S. National Science
Foundation under Grant No. DMR- 1531389, and the MRL Shared Experimental Facilities,
which are supported by the MRSEC Program of the U.S. National Science Foundation
under Grant No. DMR- 1720256.
article_number: '167601'
article_processing_charge: No
article_type: original
author:
- first_name: Alexander
full_name: Zibrov, Alexander
last_name: Zibrov
- first_name: Rao
full_name: Peng, Rao
id: 47C23AC6-02D0-11E9-BD0E-99399A5D3DEB
last_name: Peng
orcid: 0000-0003-1250-0021
- first_name: Carlos
full_name: Kometter, Carlos
last_name: Kometter
- first_name: Jia
full_name: Li, Jia
last_name: Li
- first_name: Cory
full_name: Dean, Cory
last_name: Dean
- first_name: Takashi
full_name: Taniguchi, Takashi
last_name: Taniguchi
- first_name: Kenji
full_name: Watanabe, Kenji
last_name: Watanabe
- first_name: Maksym
full_name: Serbyn, Maksym
id: 47809E7E-F248-11E8-B48F-1D18A9856A87
last_name: Serbyn
orcid: 0000-0002-2399-5827
- first_name: Andrea
full_name: Young, Andrea
last_name: Young
citation:
ama: Zibrov A, Rao P, Kometter C, et al. Emergent dirac gullies and gully-symmetry-breaking
quantum hall states in ABA trilayer graphene. Physical Review Letters.
2018;121(16). doi:10.1103/PhysRevLett.121.167601
apa: Zibrov, A., Rao, P., Kometter, C., Li, J., Dean, C., Taniguchi, T., … Young,
A. (2018). Emergent dirac gullies and gully-symmetry-breaking quantum hall states
in ABA trilayer graphene. Physical Review Letters. American Physical Society.
https://doi.org/10.1103/PhysRevLett.121.167601
chicago: Zibrov, Alexander, Peng Rao, Carlos Kometter, Jia Li, Cory Dean, Takashi
Taniguchi, Kenji Watanabe, Maksym Serbyn, and Andrea Young. “Emergent Dirac Gullies
and Gully-Symmetry-Breaking Quantum Hall States in ABA Trilayer Graphene.” Physical
Review Letters. American Physical Society, 2018. https://doi.org/10.1103/PhysRevLett.121.167601.
ieee: A. Zibrov et al., “Emergent dirac gullies and gully-symmetry-breaking
quantum hall states in ABA trilayer graphene,” Physical Review Letters,
vol. 121, no. 16. American Physical Society, 2018.
ista: Zibrov A, Rao P, Kometter C, Li J, Dean C, Taniguchi T, Watanabe K, Serbyn
M, Young A. 2018. Emergent dirac gullies and gully-symmetry-breaking quantum hall
states in ABA trilayer graphene. Physical Review Letters. 121(16), 167601.
mla: Zibrov, Alexander, et al. “Emergent Dirac Gullies and Gully-Symmetry-Breaking
Quantum Hall States in ABA Trilayer Graphene.” Physical Review Letters,
vol. 121, no. 16, 167601, American Physical Society, 2018, doi:10.1103/PhysRevLett.121.167601.
short: A. Zibrov, P. Rao, C. Kometter, J. Li, C. Dean, T. Taniguchi, K. Watanabe,
M. Serbyn, A. Young, Physical Review Letters 121 (2018).
date_created: 2018-12-11T11:45:38Z
date_published: 2018-10-19T00:00:00Z
date_updated: 2023-09-11T13:39:50Z
day: '19'
department:
- _id: MaSe
doi: 10.1103/PhysRevLett.121.167601
external_id:
arxiv:
- '1805.01038'
isi:
- '000447307500007'
intvolume: ' 121'
isi: 1
issue: '16'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1805.01038
month: '10'
oa: 1
oa_version: Preprint
publication: Physical Review Letters
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Emergent dirac gullies and gully-symmetry-breaking quantum hall states in ABA
trilayer graphene
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 121
year: '2018'
...
---
_id: '287'
abstract:
- lang: eng
text: In this paper, we discuss biological effects of electromagnetic (EM) fields
in the context of cancer biology. In particular, we review the nanomechanical
properties of microtubules (MTs), the latter being one of the most successful
targets for cancer therapy. We propose an investigation on the coupling of electromagnetic
radiation to mechanical vibrations of MTs as an important basis for biological
and medical applications. In our opinion, optomechanical methods can accurately
monitor and control the mechanical properties of isolated MTs in a liquid environment.
Consequently, studying nanomechanical properties of MTs may give useful information
for future applications to diagnostic and therapeutic technologies involving non-invasive
externally applied physical fields. For example, electromagnetic fields or high
intensity ultrasound can be used therapeutically avoiding harmful side effects
of chemotherapeutic agents or classical radiation therapy.
acknowledgement: The work of SB has been supported by the European Unions Horizon
2020 research and innovation program under the Marie Sklodowska Curie grant agreement
No MSC-IF 707438 SUPEREOM. JAT gratefully acknowledges funding support from NSERC
(Canada) for his research. MC acknowledges support from the Czech Science Foundation,
projects 15-17102S and 17-11898S and he participates in COST Action BM1309, CA15211
and bilateral exchange project between Czech and Slovak Academies of Sciences, SAV-15-22.
article_processing_charge: No
author:
- first_name: Vahid
full_name: Salari, Vahid
last_name: Salari
- first_name: Shabir
full_name: Barzanjeh, Shabir
id: 2D25E1F6-F248-11E8-B48F-1D18A9856A87
last_name: Barzanjeh
orcid: 0000-0003-0415-1423
- first_name: Michal
full_name: Cifra, Michal
last_name: Cifra
- first_name: Christoph
full_name: Simon, Christoph
last_name: Simon
- first_name: Felix
full_name: Scholkmann, Felix
last_name: Scholkmann
- first_name: Zahra
full_name: Alirezaei, Zahra
last_name: Alirezaei
- first_name: Jack
full_name: Tuszynski, Jack
last_name: Tuszynski
citation:
ama: Salari V, Barzanjeh S, Cifra M, et al. Electromagnetic fields and optomechanics
In cancer diagnostics and treatment. Frontiers in Bioscience - Landmark.
2018;23(8):1391-1406. doi:10.2741/4651
apa: Salari, V., Barzanjeh, S., Cifra, M., Simon, C., Scholkmann, F., Alirezaei,
Z., & Tuszynski, J. (2018). Electromagnetic fields and optomechanics In cancer
diagnostics and treatment. Frontiers in Bioscience - Landmark. Frontiers
in Bioscience. https://doi.org/10.2741/4651
chicago: Salari, Vahid, Shabir Barzanjeh, Michal Cifra, Christoph Simon, Felix Scholkmann,
Zahra Alirezaei, and Jack Tuszynski. “Electromagnetic Fields and Optomechanics
In Cancer Diagnostics and Treatment.” Frontiers in Bioscience - Landmark.
Frontiers in Bioscience, 2018. https://doi.org/10.2741/4651.
ieee: V. Salari et al., “Electromagnetic fields and optomechanics In cancer
diagnostics and treatment,” Frontiers in Bioscience - Landmark, vol. 23,
no. 8. Frontiers in Bioscience, pp. 1391–1406, 2018.
ista: Salari V, Barzanjeh S, Cifra M, Simon C, Scholkmann F, Alirezaei Z, Tuszynski
J. 2018. Electromagnetic fields and optomechanics In cancer diagnostics and treatment.
Frontiers in Bioscience - Landmark. 23(8), 1391–1406.
mla: Salari, Vahid, et al. “Electromagnetic Fields and Optomechanics In Cancer Diagnostics
and Treatment.” Frontiers in Bioscience - Landmark, vol. 23, no. 8, Frontiers
in Bioscience, 2018, pp. 1391–406, doi:10.2741/4651.
short: V. Salari, S. Barzanjeh, M. Cifra, C. Simon, F. Scholkmann, Z. Alirezaei,
J. Tuszynski, Frontiers in Bioscience - Landmark 23 (2018) 1391–1406.
date_created: 2018-12-11T11:45:37Z
date_published: 2018-03-01T00:00:00Z
date_updated: 2023-09-11T13:38:14Z
day: '01'
department:
- _id: JoFi
doi: 10.2741/4651
ec_funded: 1
external_id:
isi:
- '000439042800001'
pmid:
- '29293441'
intvolume: ' 23'
isi: 1
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.bioscience.org/2018/v23/af/4651/fulltext.htm
month: '03'
oa: 1
oa_version: Submitted Version
page: 1391 - 1406
pmid: 1
project:
- _id: 258047B6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '707438'
name: 'Microwave-to-Optical Quantum Link: Quantum Teleportation and Quantum Illumination
with cavity Optomechanics SUPEREOM'
publication: Frontiers in Bioscience - Landmark
publication_status: published
publisher: Frontiers in Bioscience
quality_controlled: '1'
scopus_import: '1'
status: public
title: Electromagnetic fields and optomechanics In cancer diagnostics and treatment
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 23
year: '2018'
...