@article{3051,
author = {Weijers, Dolf and Friml, Jirí},
journal = {Cell},
number = {6},
pages = {1172 -- 1172},
publisher = {Cell Press},
title = {{SnapShot: Auxin signaling and transport}},
doi = {10.1016/j.cell.2009.03.009},
volume = {136},
year = {2009},
}
@article{3052,
abstract = {The dynamic, differential distribution of the hormone auxin within plant tissues controls an impressive variety of developmental processes, which tailor plant growth and morphology to environmental conditions. Various environmental and endogenous signals can be integrated into changes in auxin distribution through their effects on local auxin biosynthesis and intercellular auxin transport. Individual cells interpret auxin largely by a nuclear signaling pathway that involves the F box protein TIR1 acting as an auxin receptor. Auxin-dependent TIR1 activity leads to ubiquitination-based degradation of transcriptional repressors and complex transcriptional reprogramming. Thus, auxin appears to be a versatile trigger of preprogrammed developmental changes in plant cells.},
author = {Vanneste, Steffen and Friml, Jirí},
journal = {Cell},
number = {6},
pages = {1005 -- 1016},
publisher = {Cell Press},
title = {{Auxin: A trigger for change in plant development}},
doi = {10.1016/j.cell.2009.03.001},
volume = {136},
year = {2009},
}
@article{3057,
abstract = {The differential distribution of the plant signaling molecule auxin is required for many aspects of plant development. Local auxin maxima and gradients arise as a result of local auxin metabolism and, predominantly, from directional cell-to-cell transport. In this primer, we discuss how the coordinated activity of several auxin influx and efflux systems, which transport auxin across the plasma membrane, mediates directional auxin flow. This activity crucially contributes to the correct setting of developmental cues in embryogenesis, organogenesis, vascular tissue formation and directional growth in response to environmental stimuli.},
author = {Petrášek, Jan and Friml, Jirí},
journal = {Development},
number = {16},
pages = {2675 -- 2688},
publisher = {Company of Biologists},
title = {{Auxin transport routes in plant development}},
doi = {10.1242/dev.030353},
volume = {136},
year = {2009},
}
@article{3061,
abstract = {The PIN-FORMED (PIN) proteins are secondary transporters acting in the efflux of the plant signal molecule auxin from cells. They are asymmetrically localized within cells and their polarity determines the directionality of intercellular auxin flow. PIN genes are found exclusively in the genomes of multicellular plants and play an important role in regulating asymmetric auxin distribution in multiple developmental processes, including embryogenesis, organogenesis, tissue differentiation and tropic responses. All PIN proteins have a similar structure with amino- and carboxy-terminal hydrophobic, membrane-spanning domains separated by a central hydrophilic domain. The structure of the hydrophobic domains is well conserved. The hydrophilic domain is more divergent and it determines eight groups within the protein family. The activity of PIN proteins is regulated at multiple levels, including transcription, protein stability, subcellular localization and transport activity. Different endogenous and environmental signals can modulate PIN activity and thus modulate auxin-distribution-dependent development. A large group of PIN proteins, including the most ancient members known from mosses, localize to the endoplasmic reticulum and they regulate the subcellular compartmentalization of auxin and thus auxin metabolism. Further work is needed to establish the physiological importance of this unexpected mode of auxin homeostasis regulation. Furthermore, the evolution of PIN-based transport, PIN protein structure and more detailed biochemical characterization of the transport function are important topics for further studies.},
author = {Křeček, Pavel and Skůpa, Petr and Libus, Jiří and Naramoto, Satoshi and Tejos, Ricardo and Friml, Jirí and Zažímalová, Eva},
journal = {Genome Biology},
number = {12},
publisher = {BioMed Central},
title = {{The PIN-FORMED (PIN) protein family of auxin transporters}},
doi = {10.1186/gb-2009-10-12-249},
volume = {10},
year = {2009},
}
@article{3197,
abstract = {The problem of obtaining the maximum a posteriori estimate of a general discrete Markov random field (i.e., a Markov random field defined using a discrete set of labels) is known to be NP-hard. However, due to its central importance in many applications, several approximation algorithms have been proposed in the literature. In this paper, we present an analysis of three such algorithms based on convex relaxations: (i) LP-S: the linear programming (LP) relaxation proposed by Schlesinger (1976) for a special case and independently in Chekuri et al. (2001), Koster et al. (1998), and Wainwright et al. (2005) for the general case; (ii) QP-RL: the quadratic programming (QP) relaxation of Ravikumar and Lafferty (2006); and (iii) SOCP-MS: the second order cone programming (SOCP) relaxation first proposed by Muramatsu and Suzuki (2003) for two label problems and later extended by Kumar et al. (2006) for a general label set.
We show that the SOCP-MS and the QP-RL relaxations are equivalent. Furthermore, we prove that despite the flexibility in the form of the constraints/objective function offered by QP and SOCP, the LP-S relaxation strictly dominates (i.e., provides a better approximation than) QP-RL and SOCP-MS. We generalize these results by defining a large class of SOCP (and equivalent QP) relaxations which is dominated by the LP-S relaxation. Based on these results we propose some novel SOCP relaxations which define constraints using random variables that form cycles or cliques in the graphical model representation of the random field. Using some examples we show that the new SOCP relaxations strictly dominate the previous approaches.},
author = {Kumar, M Pawan and Vladimir Kolmogorov and Torr, Philip H},
journal = {Journal of Machine Learning Research},
pages = {71 -- 106},
publisher = {Microtome Publishing},
title = {{An analysis of convex relaxations for MAP estimation of discrete MRFs}},
volume = {10},
year = {2009},
}
@inproceedings{3503,
abstract = {We give polynomial-time algorithms for computing the values of Markov decision processes (MDPs) with limsup and liminf objectives. A real-valued reward is assigned to each state, and the value of an infinite path in the MDP is the limsup (resp. liminf) of all rewards along the path. The value of an MDP is the maximal expected value of an infinite path that can be achieved by resolving the decisions of the MDP. Using our result on MDPs, we show that turn-based stochastic games with limsup and liminf objectives can be solved in NP ∩ coNP. },
author = {Krishnendu Chatterjee and Thomas Henzinger},
pages = {32 -- 45},
publisher = {Springer},
title = {{Probabilistic systems with limsup and liminf objectives}},
doi = {10.1007/978-3-642-03092-5_4},
volume = {5489},
year = {2009},
}
@inproceedings{2331,
abstract = {We present a review of recent work on the mathematical aspects of the BCS gap equation, covering our results of Ref. 9 as well our recent joint work with Hamza and Solovej and with Frank and Naboko, respectively. In addition, we mention some related new results.},
author = {Hainzl, Christian and Robert Seiringer},
pages = {117 -- 136},
publisher = {World Scientific Publishing},
title = {{ Spectral properties of the BCS gap equation of superfluidity}},
doi = {10.1142/9789812832382_0009},
year = {2008},
}
@inproceedings{2332,
abstract = {We present a rigorous proof of the appearance of quantized vortices in dilute trapped Bose gases with repulsive two-body interactions subject to rotation, which was obtained recently in joint work with Elliott Lieb.14 Starting from the many-body Schrödinger equation, we show that the ground state of such gases is, in a suitable limit, well described by the nonlinear Gross-Pitaevskii equation. In the case of axially symmetric traps, our results show that the appearance of quantized vortices causes spontaneous symmetry breaking in the ground state.},
author = {Robert Seiringer},
pages = {241 -- 254},
publisher = {World Scientific Publishing},
title = {{Vortices and Spontaneous Symmetry Breaking in Rotating Bose Gases}},
doi = {10.1142/9789812832382_0017},
year = {2008},
}
@article{2374,
abstract = {A lower bound is derived on the free energy (per unit volume) of a homogeneous Bose gas at density Q and temperature T. In the dilute regime, i.e., when a3 1, where a denotes the scattering length of the pair-interaction potential, our bound differs to leading order from the expression for non-interacting particles by the term 4πa(2 2}-[ - c]2+). Here, c(T) denotes the critical density for Bose-Einstein condensation (for the non-interacting gas), and [ · ]+ = max{ ·, 0} denotes the positive part. Our bound is uniform in the temperature up to temperatures of the order of the critical temperature, i.e., T ~ 2/3 or smaller. One of the key ingredients in the proof is the use of coherent states to extend the method introduced in [17] for estimating correlations to temperatures below the critical one.},
author = {Robert Seiringer},
journal = {Communications in Mathematical Physics},
number = {3},
pages = {595 -- 636},
publisher = {Springer},
title = {{Free energy of a dilute Bose gas: Lower bound}},
doi = {10.1007/s00220-008-0428-2},
volume = {279},
year = {2008},
}
@article{2376,
abstract = {We derive upper and lower bounds on the critical temperature Tc and the energy gap Ξ (at zero temperature) for the BCS gap equation, describing spin- 1 2 fermions interacting via a local two-body interaction potential λV(x). At weak coupling λ 1 and under appropriate assumptions on V(x), our bounds show that Tc ∼A exp(-B/λ) and Ξ∼C exp(-B/λ) for some explicit coefficients A, B, and C depending on the interaction V(x) and the chemical potential μ. The ratio A/C turns out to be a universal constant, independent of both V(x) and μ. Our analysis is valid for any μ; for small μ, or low density, our formulas reduce to well-known expressions involving the scattering length of V(x).},
author = {Hainzl, Christian and Robert Seiringer},
journal = {Physical Review B - Condensed Matter and Materials Physics},
number = {18},
publisher = {American Physical Society},
title = {{Critical temperature and energy gap for the BCS equation}},
doi = {10.1103/PhysRevB.77.184517},
volume = {77},
year = {2008},
}
@article{2377,
abstract = {We prove that the critical temperature for the BCS gap equation is given by T c = μ ( 8\π e γ-2+ o(1)) e π/(2μa) in the low density limit μ→ 0, with γ denoting Euler's constant. The formula holds for a suitable class of interaction potentials with negative scattering length a in the absence of bound states.},
author = {Hainzl, Christian and Robert Seiringer},
journal = {Letters in Mathematical Physics},
number = {2-3},
pages = {99 -- 107},
publisher = {Springer},
title = {{The BCS critical temperature for potentials with negative scattering length}},
doi = {10.1007/s11005-008-0242-y},
volume = {84},
year = {2008},
}
@article{2378,
abstract = {We derive a lower bound on the ground state energy of the Hubbard model for given value of the total spin. In combination with the upper bound derived previously by Giuliani (J. Math. Phys. 48:023302, [2007]), our result proves that in the low density limit the leading order correction compared to the ground state energy of a non-interacting lattice Fermi gas is given by 8πaσ uσ d , where σ u(d) denotes the density of the spin-up (down) particles, and a is the scattering length of the contact interaction potential. This result extends previous work on the corresponding continuum model to the lattice case.},
author = {Robert Seiringer and Yin, Jun},
journal = {Journal of Statistical Physics},
number = {6},
pages = {1139 -- 1154},
publisher = {Springer},
title = {{Ground state energy of the low density hubbard model}},
doi = {10.1007/s10955-008-9527-x},
volume = {131},
year = {2008},
}
@article{2379,
author = {Frank, Rupert L and Lieb, Élliott H and Robert Seiringer},
journal = {Journal of the American Mathematical Society},
number = {4},
pages = {925 -- 950},
publisher = {American Mathematical Society},
title = {{Hardy-Lieb-Thirring inequalities for fractional Schrödinger operators}},
doi = {10.1090/S0894-0347-07-00582-6},
volume = {21},
year = {2008},
}
@article{2380,
abstract = {The Bardeen-Cooper-Schrieffer (BCS) functional has recently received renewed attention as a description of fermionic gases interacting with local pairwise interactions. We present here a rigorous analysis of the BCS functional for general pair interaction potentials. For both zero and positive temperature, we show that the existence of a non-trivial solution of the nonlinear BCS gap equation is equivalent to the existence of a negative eigenvalue of a certain linear operator. From this we conclude the existence of a critical temperature below which the BCS pairing wave function does not vanish identically. For attractive potentials, we prove that the critical temperature is non-zero and exponentially small in the strength of the potential.},
author = {Hainzl, Christian and Hamza, Eman and Robert Seiringer and Solovej, Jan P},
journal = {Communications in Mathematical Physics},
number = {2},
pages = {349 -- 367},
publisher = {Springer},
title = {{The BCS functional for general pair interactions}},
doi = {10.1007/s00220-008-0489-2},
volume = {281},
year = {2008},
}
@article{2381,
abstract = {We determine the sharp constant in the Hardy inequality for fractional Sobolev spaces. To do so, we develop a non-linear and non-local version of the ground state representation, which even yields a remainder term. From the sharp Hardy inequality we deduce the sharp constant in a Sobolev embedding which is optimal in the Lorentz scale. In the appendix, we characterize the cases of equality in the rearrangement inequality in fractional Sobolev spaces.},
author = {Frank, Rupert L and Robert Seiringer},
journal = {Journal of Functional Analysis},
number = {12},
pages = {3407 -- 3430},
publisher = {Academic Press},
title = {{Non-linear ground state representations and sharp Hardy inequalities}},
doi = {10.1016/j.jfa.2008.05.015},
volume = {255},
year = {2008},
}
@article{2382,
abstract = {We show that the Lieb-Liniger model for one-dimensional bosons with repulsive δ-function interaction can be rigorously derived via a scaling limit from a dilute three-dimensional Bose gas with arbitrary repulsive interaction potential of finite scattering length. For this purpose, we prove bounds on both the eigenvalues and corresponding eigenfunctions of three-dimensional bosons in strongly elongated traps and relate them to the corresponding quantities in the Lieb-Liniger model. In particular, if both the scattering length a and the radius r of the cylindrical trap go to zero, the Lieb-Liniger model with coupling constant g ∼ a/r 2 is derived. Our bounds are uniform in g in the whole parameter range 0 ≤ g ≤ ∞, and apply to the Hamiltonian for three-dimensional bosons in a spectral window of size ∼ r -2 above the ground state energy.},
author = {Robert Seiringer and Yin, Jun},
journal = {Communications in Mathematical Physics},
number = {2},
pages = {459 -- 479},
publisher = {Springer},
title = {{The Lieb-Liniger model as a limit of dilute bosons in three dimensions}},
doi = {10.1007/s00220-008-0521-6},
volume = {284},
year = {2008},
}
@article{2383,
abstract = {We study the relativistic electron-positron field at positive temperature in the Hartree-Fock approximation. We consider both the case with and without exchange terms, and investigate the existence and properties of minimizers. Our approach is non-perturbative in the sense that the relevant electron subspace is determined in a self-consistent way. The present work is an extension of previous work by Hainzl, Lewin, Séré and Solovej where the case of zero temperature was considered.},
author = {Hainzl, Christian and Lewin, Mathieu and Robert Seiringer},
journal = {Reviews in Mathematical Physics},
number = {10},
pages = {1283 -- 1307},
publisher = {World Scientific Publishing},
title = {{A nonlinear model for relativistic electrons at positive temperature}},
doi = {10.1142/S0129055X08003547},
volume = {20},
year = {2008},
}
@inproceedings{2702,
abstract = {We review our proof that in a scaling limit, the time evolution of a quantum particle in a static random environment leads to a diffusion equation. In particular, we discuss the role of Feynman graph expansions and of renormalization.
},
author = {László Erdös and Salmhofer, Manfred and Yau, Horng-Tzer},
pages = {167 -- 182},
publisher = {World Scientific Publishing},
title = {{Feynman graphs and renormalization in quantum diffusion}},
doi = {10.1142/9789812833556_0011},
year = {2008},
}
@article{1763,
abstract = {The field of cavity quantum electrodynamics (QED), traditionally studied in atomic systems, has gained new momentum by recent reports of quantum optical experiments with solid-state semiconducting and superconducting systems. In cavity QED, the observation of the vacuum Rabi mode splitting is used to investigate the nature of matter-light interaction at a quantum-mechanical level. However, this effect can, at least in principle, be explained classically as the normal mode splitting of two coupled linear oscillators. It has been suggested that an observation of the scaling of the resonant atom-photon coupling strength in the Jaynes-Cummings energy ladder with the square root of photon number n is sufficient to prove that the system is quantum mechanical in nature. Here we report a direct spectroscopic observation of this characteristic quantum nonlinearity. Measuring the photonic degree of freedom of the coupled system, our measurements provide unambiguous spectroscopic evidence for the quantum nature of the resonant atom-field interaction in cavity QED. We explore atom-photon superposition states involving up to two photons, using a spectroscopic pump and probe technique. The experiments have been performed in a circuit QED set-up, in which very strong coupling is realized by the large dipole coupling strength and the long coherence time of a superconducting qubit embedded in a high-quality on-chip microwave cavity. Circuit QED systems also provide a natural quantum interface between flying qubits (photons) and stationary qubits for applications in quantum information processing and communication.},
author = {Johannes Fink and Göppl, M and Baur, Matthias P and Bianchetti, R and Leek, Peter J and Blais, Alexandre and Wallraff, Andreas},
journal = {Nature},
number = {7202},
pages = {315 -- 318},
publisher = {Nature Publishing Group},
title = {{Climbing the Jaynes-Cummings ladder and observing its √n nonlinearity in a cavity QED system}},
doi = {10.1038/nature07112},
volume = {454},
year = {2008},
}
@article{1765,
abstract = {High quality on-chip microwave resonators have recently found prominent new applications in quantum optics and quantum information processing experiments with superconducting electronic circuits, a field now known as circuit quantum electrodynamics (QED). They are also used as single photon detectors and parametric amplifiers. Here we analyze the physical properties of coplanar waveguide resonators and their relation to the materials properties for use in circuit QED. We have designed and fabricated resonators with fundamental frequencies from 2 to 9 GHz and quality factors ranging from a few hundreds to a several hundred thousands controlled by appropriately designed input and output coupling capacitors. The microwave transmission spectra measured at temperatures of 20 mK are shown to be in good agreement with theoretical lumped element and distributed element transmission matrix models. In particular, the experimentally determined resonance frequencies, quality factors, and insertion losses are fully and consistently explained by the two models for all measured devices. The high level of control and flexibility in design renders these resonators ideal for storing and manipulating quantum electromagnetic fields in integrated superconducting electronic circuits.},
author = {Göppl, M and Fragner, A and Baur, Matthias P and Bianchetti, R and Filipp, Stefan and Johannes Fink and Leek, Peter J and Puebla, G and Steffen, L. Kraig and Wallraff, Andreas},
journal = {Journal of Applied Physics},
number = {11},
publisher = {American Institute of Physics},
title = {{Coplanar waveguide resonators for circuit quantum electrodynamics}},
doi = {10.1063/1.3010859},
volume = {104},
year = {2008},
}