[{"language":[{"iso":"eng"}],"file":[{"content_type":"application/pdf","access_level":"open_access","relation":"main_file","file_id":"13338","checksum":"f59217e1083767777318b5d0cc5e141d","success":1,"date_updated":"2023-08-01T06:40:35Z","file_size":1759993,"creator":"dernst","date_created":"2023-08-01T06:40:35Z","file_name":"2023_ScienceAdvance_Ogura.pdf"}],"publication_status":"published","publication_identifier":{"eissn":["2375-2548"]},"volume":9,"issue":"27","pmid":1,"oa_version":"Published Version","abstract":[{"text":"Plants can regenerate their bodies via de novo establishment of shoot apical meristems (SAMs) from pluripotent callus. Only a small fraction of callus cells is eventually specified into SAMs but the molecular mechanisms underlying fate specification remain obscure. The expression of WUSCHEL (WUS) is an early hallmark of SAM fate acquisition. Here, we show that a WUS paralog, WUSCHEL-RELATED HOMEOBOX 13 (WOX13), negatively regulates SAM formation from callus in Arabidopsis thaliana. WOX13 promotes non-meristematic cell fate via transcriptional repression of WUS and other SAM regulators and activation of cell wall modifiers. Our Quartz-Seq2–based single cell transcriptome revealed that WOX13 plays key roles in determining cellular identity of callus cell population. We propose that reciprocal inhibition between WUS and WOX13 mediates critical cell fate determination in pluripotent cell population, which has a major impact on regeneration efficiency.","lang":"eng"}],"intvolume":" 9","month":"07","scopus_import":"1","ddc":["580"],"date_updated":"2023-12-13T11:59:29Z","file_date_updated":"2023-08-01T06:40:35Z","_id":"13259","status":"public","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"type":"journal_article","article_type":"original","publication":"Science Advances","day":"07","year":"2023","isi":1,"has_accepted_license":"1","date_created":"2023-07-23T22:01:11Z","doi":"10.1126/sciadv.adg6983","date_published":"2023-07-07T00:00:00Z","page":"eadg6983","acknowledgement":"Wethank Y.Iwayama, K.Ohtawa, K.Fukumoto,andN. Mataga (RIKENRRD) for technical assistance in Quartz-Seq2analyses; M. Mouri(RIKENCSRS)for technical support with plasmid construction and transactivation assay; Y. Ikeda (NAIST) for technical support with tissue culture; and A. Furuta for technical support in bulk RNA-seq analysis. We also thank the Single-cell Omics Laboratory for technical consultation in scRNA-seq analyses, the members of the Laboratory for Bioinformatics Research at the RIKEN Center for Biosystems Dynamics Research, and A. Matsushima and T. Ichikawa for IT infrastructure management. This work was supported by JSPS KAKENHI(17K15146,19H05670,20K06712,20H04894,20H05431,and 22H04713 to M.I. and 20H03284 and 20H05911 to K.S.), by the JST FOREST Program (JPMJFR214H to M.I.), by The Naito Foundation to M.I.; by Takeda Science Foundation to M.I,and by the Shiseido Female Researcher Science Grant to M.I. This work was partially supported by RIKENE pigenome Control Program, Medical Research Center Initiative for High Depth Omics, and JST CREST(JPMJCR16G3and JPMJCR1926)to I.N.","oa":1,"publisher":"American Association for the Advancement of Science","quality_controlled":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"mla":"Ogura, Nao, et al. “WUSCHEL-RELATED HOMEOBOX 13 Suppresses de Novo Shoot Regeneration via Cell Fate Control of Pluripotent Callus.” Science Advances, vol. 9, no. 27, American Association for the Advancement of Science, 2023, p. eadg6983, doi:10.1126/sciadv.adg6983.","ieee":"N. Ogura et al., “WUSCHEL-RELATED HOMEOBOX 13 suppresses de novo shoot regeneration via cell fate control of pluripotent callus,” Science Advances, vol. 9, no. 27. American Association for the Advancement of Science, p. eadg6983, 2023.","short":"N. Ogura, Y. Sasagawa, T. Ito, T. Tameshige, S. Kawai, M. Sano, Y. Doll, A. Iwase, A. Kawamura, T. Suzuki, I. Nikaido, K. Sugimoto, M. Ikeuchi, Science Advances 9 (2023) eadg6983.","ama":"Ogura N, Sasagawa Y, Ito T, et al. WUSCHEL-RELATED HOMEOBOX 13 suppresses de novo shoot regeneration via cell fate control of pluripotent callus. Science Advances. 2023;9(27):eadg6983. doi:10.1126/sciadv.adg6983","apa":"Ogura, N., Sasagawa, Y., Ito, T., Tameshige, T., Kawai, S., Sano, M., … Ikeuchi, M. (2023). WUSCHEL-RELATED HOMEOBOX 13 suppresses de novo shoot regeneration via cell fate control of pluripotent callus. Science Advances. American Association for the Advancement of Science. https://doi.org/10.1126/sciadv.adg6983","chicago":"Ogura, Nao, Yohei Sasagawa, Tasuku Ito, Toshiaki Tameshige, Satomi Kawai, Masaki Sano, Yuki Doll, et al. “WUSCHEL-RELATED HOMEOBOX 13 Suppresses de Novo Shoot Regeneration via Cell Fate Control of Pluripotent Callus.” Science Advances. American Association for the Advancement of Science, 2023. https://doi.org/10.1126/sciadv.adg6983.","ista":"Ogura N, Sasagawa Y, Ito T, Tameshige T, Kawai S, Sano M, Doll Y, Iwase A, Kawamura A, Suzuki T, Nikaido I, Sugimoto K, Ikeuchi M. 2023. WUSCHEL-RELATED HOMEOBOX 13 suppresses de novo shoot regeneration via cell fate control of pluripotent callus. Science Advances. 9(27), eadg6983."},"title":"WUSCHEL-RELATED HOMEOBOX 13 suppresses de novo shoot regeneration via cell fate control of pluripotent callus","article_processing_charge":"Yes","external_id":{"isi":["001030983100012"],"pmid":["37418524"]},"author":[{"full_name":"Ogura, Nao","last_name":"Ogura","first_name":"Nao"},{"last_name":"Sasagawa","full_name":"Sasagawa, Yohei","first_name":"Yohei"},{"full_name":"Ito, Tasuku","orcid":"0000-0002-2482-9089","last_name":"Ito","id":"d5a17a4a-e534-11eb-93ec-91fa2aa9bd57","first_name":"Tasuku"},{"last_name":"Tameshige","full_name":"Tameshige, Toshiaki","first_name":"Toshiaki"},{"first_name":"Satomi","last_name":"Kawai","full_name":"Kawai, Satomi"},{"first_name":"Masaki","last_name":"Sano","full_name":"Sano, Masaki"},{"first_name":"Yuki","last_name":"Doll","full_name":"Doll, Yuki"},{"last_name":"Iwase","full_name":"Iwase, Akira","first_name":"Akira"},{"full_name":"Kawamura, Ayako","last_name":"Kawamura","first_name":"Ayako"},{"first_name":"Takamasa","full_name":"Suzuki, Takamasa","last_name":"Suzuki"},{"full_name":"Nikaido, Itoshi","last_name":"Nikaido","first_name":"Itoshi"},{"first_name":"Keiko","last_name":"Sugimoto","full_name":"Sugimoto, Keiko"},{"last_name":"Ikeuchi","full_name":"Ikeuchi, Momoko","first_name":"Momoko"}]},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ama":"Wolfsberger W, Chhugani K, Shchubelka K, et al. Scientists without borders: Lessons from Ukraine. GigaScience. 2023;12. doi:10.1093/gigascience/giad045","apa":"Wolfsberger, W., Chhugani, K., Shchubelka, K., Frolova, A., Salyha, Y., Zlenko, O., … Oleksyk, T. K. (2023). Scientists without borders: Lessons from Ukraine. GigaScience. Oxford Academic. https://doi.org/10.1093/gigascience/giad045","short":"W. Wolfsberger, K. Chhugani, K. Shchubelka, A. Frolova, Y. Salyha, O. Zlenko, M. Arych, D. Dziuba, A. Parkhomenko, V. Smolanka, Z.H. Gümüş, E. Sezgin, A. Diaz-Lameiro, V.R. Toth, M. Maci, E. Bortz, F. Kondrashov, P.M. Morton, P.P. Łabaj, V. Romero, J. Hlávka, S. Mangul, T.K. Oleksyk, GigaScience 12 (2023).","ieee":"W. Wolfsberger et al., “Scientists without borders: Lessons from Ukraine,” GigaScience, vol. 12. Oxford Academic, 2023.","mla":"Wolfsberger, Walter, et al. “Scientists without Borders: Lessons from Ukraine.” GigaScience, vol. 12, Oxford Academic, 2023, doi:10.1093/gigascience/giad045.","ista":"Wolfsberger W, Chhugani K, Shchubelka K, Frolova A, Salyha Y, Zlenko O, Arych M, Dziuba D, Parkhomenko A, Smolanka V, Gümüş ZH, Sezgin E, Diaz-Lameiro A, Toth VR, Maci M, Bortz E, Kondrashov F, Morton PM, Łabaj PP, Romero V, Hlávka J, Mangul S, Oleksyk TK. 2023. Scientists without borders: Lessons from Ukraine. GigaScience. 12.","chicago":"Wolfsberger, Walter, Karishma Chhugani, Khrystyna Shchubelka, Alina Frolova, Yuriy Salyha, Oksana Zlenko, Mykhailo Arych, et al. “Scientists without Borders: Lessons from Ukraine.” GigaScience. Oxford Academic, 2023. https://doi.org/10.1093/gigascience/giad045."},"title":"Scientists without borders: Lessons from Ukraine","author":[{"first_name":"Walter","full_name":"Wolfsberger, Walter","last_name":"Wolfsberger"},{"last_name":"Chhugani","full_name":"Chhugani, Karishma","first_name":"Karishma"},{"first_name":"Khrystyna","last_name":"Shchubelka","full_name":"Shchubelka, Khrystyna"},{"first_name":"Alina","full_name":"Frolova, Alina","last_name":"Frolova"},{"first_name":"Yuriy","last_name":"Salyha","full_name":"Salyha, Yuriy"},{"first_name":"Oksana","last_name":"Zlenko","full_name":"Zlenko, Oksana"},{"first_name":"Mykhailo","last_name":"Arych","full_name":"Arych, Mykhailo"},{"full_name":"Dziuba, Dmytro","last_name":"Dziuba","first_name":"Dmytro"},{"first_name":"Andrii","full_name":"Parkhomenko, Andrii","last_name":"Parkhomenko"},{"last_name":"Smolanka","full_name":"Smolanka, Volodymyr","first_name":"Volodymyr"},{"first_name":"Zeynep H.","last_name":"Gümüş","full_name":"Gümüş, Zeynep H."},{"first_name":"Efe","last_name":"Sezgin","full_name":"Sezgin, Efe"},{"first_name":"Alondra","last_name":"Diaz-Lameiro","full_name":"Diaz-Lameiro, Alondra"},{"full_name":"Toth, Viktor R.","last_name":"Toth","first_name":"Viktor R."},{"full_name":"Maci, Megi","last_name":"Maci","first_name":"Megi"},{"last_name":"Bortz","full_name":"Bortz, Eric","first_name":"Eric"},{"full_name":"Kondrashov, Fyodor","orcid":"0000-0001-8243-4694","last_name":"Kondrashov","first_name":"Fyodor","id":"44FDEF62-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Morton, Patricia M.","last_name":"Morton","first_name":"Patricia M."},{"first_name":"Paweł P.","full_name":"Łabaj, Paweł P.","last_name":"Łabaj"},{"full_name":"Romero, Veronika","last_name":"Romero","first_name":"Veronika"},{"full_name":"Hlávka, Jakub","last_name":"Hlávka","first_name":"Jakub"},{"last_name":"Mangul","full_name":"Mangul, Serghei","first_name":"Serghei"},{"last_name":"Oleksyk","full_name":"Oleksyk, Taras K.","first_name":"Taras K."}],"article_processing_charge":"Yes","external_id":{"isi":["001081086100001"],"pmid":["37496156"]},"acknowledgement":"Our article is dedicated to all freedom-loving people around the world and to the people of Ukraine who fight for our freedom. Special thanks to Anita Bandrowski, Oleksandra V. Ivashchenko, and Sanita Reinsone for the helpful review, valuable criticism, and useful suggestions while preparing this manuscript, and to Tetiana Yes'kova for helping with Ukrainian translation.\r\nAll authors volunteered their time. No funding supported work on this article.","publisher":"Oxford Academic","quality_controlled":"1","oa":1,"day":"27","publication":"GigaScience","isi":1,"year":"2023","doi":"10.1093/gigascience/giad045","date_published":"2023-07-27T00:00:00Z","date_created":"2023-08-06T22:01:13Z","_id":"13976","status":"public","article_type":"original","type":"journal_article","date_updated":"2023-12-13T12:01:46Z","department":[{"_id":"FyKo"}],"oa_version":"Published Version","pmid":1,"abstract":[{"text":"Conflicts and natural disasters affect entire populations of the countries involved and, in addition to the thousands of lives destroyed, have a substantial negative impact on the scientific advances these countries provide. The unprovoked invasion of Ukraine by Russia, the devastating earthquake in Turkey and Syria, and the ongoing conflicts in the Middle East are just a few examples. Millions of people have been killed or displaced, their futures uncertain. These events have resulted in extensive infrastructure collapse, with loss of electricity, transportation, and access to services. Schools, universities, and research centers have been destroyed along with decades’ worth of data, samples, and findings. Scholars in disaster areas face short- and long-term problems in terms of what they can accomplish now for obtaining grants and for employment in the long run. In our interconnected world, conflicts and disasters are no longer a local problem but have wide-ranging impacts on the entire world, both now and in the future. Here, we focus on the current and ongoing impact of war on the scientific community within Ukraine and from this draw lessons that can be applied to all affected countries where scientists at risk are facing hardship. We present and classify examples of effective and feasible mechanisms used to support researchers in countries facing hardship and discuss how these can be implemented with help from the international scientific community and what more is desperately needed. Reaching out, providing accessible training opportunities, and developing collaborations should increase inclusion and connectivity, support scientific advancements within affected communities, and expedite postwar and disaster recovery.","lang":"eng"}],"month":"07","intvolume":" 12","scopus_import":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.1093/gigascience/giad045"}],"language":[{"iso":"eng"}],"publication_identifier":{"eissn":["2047-217X"]},"publication_status":"epub_ahead","volume":12},{"license":"https://creativecommons.org/licenses/by-nd/4.0/","ec_funded":1,"issue":"2","volume":73,"language":[{"iso":"eng"}],"file":[{"file_name":"2023_AnnalesFourier_Lyczak.pdf","date_created":"2023-08-07T07:19:42Z","creator":"dernst","file_size":1529821,"date_updated":"2023-08-07T07:19:42Z","success":1,"checksum":"daf53fc614c894422e4c0fb3d2a2ae3e","file_id":"13977","relation":"main_file","access_level":"open_access","content_type":"application/pdf"}],"publication_status":"published","publication_identifier":{"issn":["0373-0956"]},"intvolume":" 73","month":"05","scopus_import":"1","oa_version":"Published Version","abstract":[{"lang":"eng","text":"We construct families of log K3 surfaces and study the arithmetic of their members. We use this to produce explicit surfaces with an order 5 Brauer–Manin obstruction to the integral Hasse principle."}],"file_date_updated":"2023-08-07T07:19:42Z","department":[{"_id":"TiBr"}],"ddc":["510"],"date_updated":"2023-12-13T12:03:04Z","status":"public","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by-nd/4.0/legalcode","image":"/image/cc_by_nd.png","name":"Creative Commons Attribution-NoDerivatives 4.0 International (CC BY-ND 4.0)","short":"CC BY-ND (4.0)"},"article_type":"original","type":"journal_article","_id":"13973","date_created":"2023-08-06T22:01:12Z","date_published":"2023-05-12T00:00:00Z","doi":"10.5802/aif.3529","page":"447-478","publication":"Annales de l'Institut Fourier","day":"12","year":"2023","isi":1,"has_accepted_license":"1","oa":1,"publisher":"Association des Annales de l'Institut Fourier","quality_controlled":"1","acknowledgement":"This paper was completed as part of a project which received funding from the\r\nEuropean Union’s Horizon 2020 research and innovation programme under the Marie\r\nSkłodowska-Curie grant agreement No. 754411.","title":"Order 5 Brauer–Manin obstructions to the integral Hasse principle on log K3 surfaces","article_processing_charge":"Yes (in subscription journal)","external_id":{"isi":["001000279500001"],"arxiv":["2005.14013"]},"author":[{"id":"3572849A-F248-11E8-B48F-1D18A9856A87","first_name":"Julian","full_name":"Lyczak, Julian","last_name":"Lyczak"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ista":"Lyczak J. 2023. Order 5 Brauer–Manin obstructions to the integral Hasse principle on log K3 surfaces. Annales de l’Institut Fourier. 73(2), 447–478.","chicago":"Lyczak, Julian. “Order 5 Brauer–Manin Obstructions to the Integral Hasse Principle on Log K3 Surfaces.” Annales de l’Institut Fourier. Association des Annales de l’Institut Fourier, 2023. https://doi.org/10.5802/aif.3529.","ieee":"J. Lyczak, “Order 5 Brauer–Manin obstructions to the integral Hasse principle on log K3 surfaces,” Annales de l’Institut Fourier, vol. 73, no. 2. Association des Annales de l’Institut Fourier, pp. 447–478, 2023.","short":"J. Lyczak, Annales de l’Institut Fourier 73 (2023) 447–478.","ama":"Lyczak J. Order 5 Brauer–Manin obstructions to the integral Hasse principle on log K3 surfaces. Annales de l’Institut Fourier. 2023;73(2):447-478. doi:10.5802/aif.3529","apa":"Lyczak, J. (2023). Order 5 Brauer–Manin obstructions to the integral Hasse principle on log K3 surfaces. Annales de l’Institut Fourier. Association des Annales de l’Institut Fourier. https://doi.org/10.5802/aif.3529","mla":"Lyczak, Julian. “Order 5 Brauer–Manin Obstructions to the Integral Hasse Principle on Log K3 Surfaces.” Annales de l’Institut Fourier, vol. 73, no. 2, Association des Annales de l’Institut Fourier, 2023, pp. 447–78, doi:10.5802/aif.3529."},"project":[{"_id":"260C2330-B435-11E9-9278-68D0E5697425","call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","grant_number":"754411"}]},{"month":"07","scopus_import":"1","main_file_link":[{"open_access":"1","url":"https://doi.org/10.48550/arXiv.1812.04911"}],"oa_version":"Preprint","abstract":[{"text":"The Tverberg theorem is one of the cornerstones of discrete geometry. It states that, given a set X of at least (d+1)(r−1)+1 points in Rd, one can find a partition X=X1∪⋯∪Xr of X, such that the convex hulls of the Xi, i=1,…,r, all share a common point. In this paper, we prove a trengthening of this theorem that guarantees a partition which, in addition to the above, has the property that the boundaries of full-dimensional convex hulls have pairwise nonempty intersections. Possible generalizations and algorithmic aspects are also discussed. As a concrete application, we show that any n points in the plane in general position span ⌊n/3⌋ vertex-disjoint triangles that are pairwise crossing, meaning that their boundaries have pairwise nonempty intersections; this number is clearly best possible. A previous result of Álvarez-Rebollar et al. guarantees ⌊n/6⌋pairwise crossing triangles. Our result generalizes to a result about simplices in Rd, d≥2.","lang":"eng"}],"related_material":{"record":[{"status":"public","id":"6647","relation":"earlier_version"}]},"language":[{"iso":"eng"}],"publication_identifier":{"issn":["0179-5376"],"eissn":["1432-0444"]},"publication_status":"epub_ahead","status":"public","article_type":"original","type":"journal_article","_id":"13974","department":[{"_id":"UlWa"}],"date_updated":"2023-12-13T12:03:35Z","quality_controlled":"1","publisher":"Springer Nature","oa":1,"acknowledgement":"Part of the research leading to this paper was done during the 16th Gremo Workshop on Open Problems (GWOP), Waltensburg, Switzerland, June 12–16, 2018. We thank Patrick Schnider for suggesting the problem, and Stefan Felsner, Malte Milatz, and Emo Welzl for fruitful discussions during the workshop. We also thank Stefan Felsner and Manfred Scheucher for finding, communicating the example from Sect. 3.3, and the kind permission to include their visualization of the point set. We thank Dömötör Pálvölgyi, the SoCG reviewers, and DCG reviewers for various helpful comments.\r\nR. Fulek gratefully acknowledges support from Austrian Science Fund (FWF), Project M2281-N35. A. Kupavskii was supported by the Advanced Postdoc.Mobility Grant no. P300P2_177839 of the Swiss National Science Foundation. Research by P. Valtr was supported by the Grant no. 18-19158 S of the Czech Science Foundation (GAČR).","doi":"10.1007/s00454-023-00532-x","date_published":"2023-07-27T00:00:00Z","date_created":"2023-08-06T22:01:12Z","day":"27","publication":"Discrete and Computational Geometry","isi":1,"year":"2023","project":[{"grant_number":"M02281","name":"Eliminating intersections in drawings of graphs","call_identifier":"FWF","_id":"261FA626-B435-11E9-9278-68D0E5697425"}],"title":"The crossing Tverberg theorem","author":[{"last_name":"Fulek","orcid":"0000-0001-8485-1774","full_name":"Fulek, Radoslav","id":"39F3FFE4-F248-11E8-B48F-1D18A9856A87","first_name":"Radoslav"},{"full_name":"Gärtner, Bernd","last_name":"Gärtner","first_name":"Bernd"},{"first_name":"Andrey","full_name":"Kupavskii, Andrey","last_name":"Kupavskii"},{"full_name":"Valtr, Pavel","last_name":"Valtr","first_name":"Pavel"},{"last_name":"Wagner","full_name":"Wagner, Uli","orcid":"0000-0002-1494-0568","first_name":"Uli","id":"36690CA2-F248-11E8-B48F-1D18A9856A87"}],"article_processing_charge":"No","external_id":{"isi":["001038546500001"],"arxiv":["1812.04911"]},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"chicago":"Fulek, Radoslav, Bernd Gärtner, Andrey Kupavskii, Pavel Valtr, and Uli Wagner. “The Crossing Tverberg Theorem.” Discrete and Computational Geometry. Springer Nature, 2023. https://doi.org/10.1007/s00454-023-00532-x.","ista":"Fulek R, Gärtner B, Kupavskii A, Valtr P, Wagner U. 2023. The crossing Tverberg theorem. Discrete and Computational Geometry.","mla":"Fulek, Radoslav, et al. “The Crossing Tverberg Theorem.” Discrete and Computational Geometry, Springer Nature, 2023, doi:10.1007/s00454-023-00532-x.","short":"R. Fulek, B. Gärtner, A. Kupavskii, P. Valtr, U. Wagner, Discrete and Computational Geometry (2023).","ieee":"R. Fulek, B. Gärtner, A. Kupavskii, P. Valtr, and U. Wagner, “The crossing Tverberg theorem,” Discrete and Computational Geometry. Springer Nature, 2023.","apa":"Fulek, R., Gärtner, B., Kupavskii, A., Valtr, P., & Wagner, U. (2023). The crossing Tverberg theorem. Discrete and Computational Geometry. Springer Nature. https://doi.org/10.1007/s00454-023-00532-x","ama":"Fulek R, Gärtner B, Kupavskii A, Valtr P, Wagner U. The crossing Tverberg theorem. Discrete and Computational Geometry. 2023. doi:10.1007/s00454-023-00532-x"}},{"oa":1,"quality_controlled":"1","publisher":"Springer Nature","acknowledgement":"The first author thanks Yizhe Zhu for pointing out reference [30]. We thank David Renfrew for comments on an earlier draft. We thank the anonymous referee for a careful reading and helpful comments.\r\nOpen access funding provided by Institute of Science and Technology (IST Austria).","date_created":"2023-08-06T22:01:13Z","date_published":"2023-07-26T00:00:00Z","doi":"10.1007/s10959-023-01275-4","year":"2023","isi":1,"has_accepted_license":"1","publication":"Journal of Theoretical Probability","day":"26","article_processing_charge":"Yes (via OA deal)","external_id":{"arxiv":["2210.07927"],"isi":["001038341000001"]},"author":[{"last_name":"Campbell","full_name":"Campbell, Andrew J","id":"582b06a9-1f1c-11ee-b076-82ffce00dde4","first_name":"Andrew J"},{"full_name":"O’Rourke, Sean","last_name":"O’Rourke","first_name":"Sean"}],"title":"Spectrum of Lévy–Khintchine random laplacian matrices","citation":{"chicago":"Campbell, Andrew J, and Sean O’Rourke. “Spectrum of Lévy–Khintchine Random Laplacian Matrices.” Journal of Theoretical Probability. Springer Nature, 2023. https://doi.org/10.1007/s10959-023-01275-4.","ista":"Campbell AJ, O’Rourke S. 2023. Spectrum of Lévy–Khintchine random laplacian matrices. Journal of Theoretical Probability.","mla":"Campbell, Andrew J., and Sean O’Rourke. “Spectrum of Lévy–Khintchine Random Laplacian Matrices.” Journal of Theoretical Probability, Springer Nature, 2023, doi:10.1007/s10959-023-01275-4.","ieee":"A. J. Campbell and S. O’Rourke, “Spectrum of Lévy–Khintchine random laplacian matrices,” Journal of Theoretical Probability. Springer Nature, 2023.","short":"A.J. Campbell, S. O’Rourke, Journal of Theoretical Probability (2023).","apa":"Campbell, A. J., & O’Rourke, S. (2023). Spectrum of Lévy–Khintchine random laplacian matrices. Journal of Theoretical Probability. Springer Nature. https://doi.org/10.1007/s10959-023-01275-4","ama":"Campbell AJ, O’Rourke S. Spectrum of Lévy–Khintchine random laplacian matrices. Journal of Theoretical Probability. 2023. doi:10.1007/s10959-023-01275-4"},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","main_file_link":[{"url":"https://doi.org/10.1007/s10959-023-01275-4","open_access":"1"}],"scopus_import":"1","month":"07","abstract":[{"lang":"eng","text":"We consider the spectrum of random Laplacian matrices of the form Ln=An−Dn where An\r\n is a real symmetric random matrix and Dn is a diagonal matrix whose entries are equal to the corresponding row sums of An. If An is a Wigner matrix with entries in the domain of attraction of a Gaussian distribution, the empirical spectral measure of Ln is known to converge to the free convolution of a semicircle distribution and a standard real Gaussian distribution. We consider real symmetric random matrices An with independent entries (up to symmetry) whose row sums converge to a purely non-Gaussian infinitely divisible distribution, which fall into the class of Lévy–Khintchine random matrices first introduced by Jung [Trans Am Math Soc, 370, (2018)]. Our main result shows that the empirical spectral measure of Ln converges almost surely to a deterministic limit. A key step in the proof is to use the purely non-Gaussian nature of the row sums to build a random operator to which Ln converges in an appropriate sense. This operator leads to a recursive distributional equation uniquely describing the Stieltjes transform of the limiting empirical spectral measure."}],"oa_version":"Published Version","publication_status":"epub_ahead","publication_identifier":{"eissn":["1572-9230"],"issn":["0894-9840"]},"language":[{"iso":"eng"}],"tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"article_type":"original","type":"journal_article","status":"public","_id":"13975","department":[{"_id":"LaEr"}],"date_updated":"2023-12-13T12:00:50Z","ddc":["510"]},{"date_updated":"2023-12-13T11:58:57Z","department":[{"_id":"KiMo"}],"_id":"13257","status":"public","type":"journal_article","article_type":"original","language":[{"iso":"eng"}],"publication_status":"published","publication_identifier":{"issn":["2469-9950"],"eissn":["2469-9969"]},"issue":"3","volume":108,"oa_version":"Preprint","abstract":[{"text":"The magnetotropic susceptibility is the thermodynamic coefficient associated with the rotational anisotropy of the free energy in an external magnetic field and is closely related to the magnetic susceptibility. It emerges naturally in frequency-shift measurements of oscillating mechanical cantilevers, which are becoming an increasingly important tool in the quantitative study of the thermodynamics of modern condensed-matter systems. Here we discuss the basic properties of the magnetotropic susceptibility as they relate to the experimental aspects of frequency-shift measurements, as well as to the interpretation of those experiments in terms of the intrinsic properties of the system under study.","lang":"eng"}],"intvolume":" 108","month":"07","main_file_link":[{"url":"https://doi.org/10.48550/arXiv.2208.10038","open_access":"1"}],"scopus_import":"1","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"mla":"Shekhter, A., et al. “Magnetotropic Susceptibility.” Physical Review B, vol. 108, no. 3, 035111, American Physical Society, 2023, doi:10.1103/PhysRevB.108.035111.","ama":"Shekhter A, Mcdonald RD, Ramshaw BJ, Modic KA. Magnetotropic susceptibility. Physical Review B. 2023;108(3). doi:10.1103/PhysRevB.108.035111","apa":"Shekhter, A., Mcdonald, R. D., Ramshaw, B. J., & Modic, K. A. (2023). Magnetotropic susceptibility. Physical Review B. American Physical Society. https://doi.org/10.1103/PhysRevB.108.035111","short":"A. Shekhter, R.D. Mcdonald, B.J. Ramshaw, K.A. Modic, Physical Review B 108 (2023).","ieee":"A. Shekhter, R. D. Mcdonald, B. J. Ramshaw, and K. A. Modic, “Magnetotropic susceptibility,” Physical Review B, vol. 108, no. 3. American Physical Society, 2023.","chicago":"Shekhter, A., R. D. Mcdonald, B. J. Ramshaw, and Kimberly A Modic. “Magnetotropic Susceptibility.” Physical Review B. American Physical Society, 2023. https://doi.org/10.1103/PhysRevB.108.035111.","ista":"Shekhter A, Mcdonald RD, Ramshaw BJ, Modic KA. 2023. Magnetotropic susceptibility. Physical Review B. 108(3), 035111."},"title":"Magnetotropic susceptibility","article_processing_charge":"No","external_id":{"isi":["001062708600002"],"arxiv":["2208.10038"]},"author":[{"last_name":"Shekhter","full_name":"Shekhter, A.","first_name":"A."},{"last_name":"Mcdonald","full_name":"Mcdonald, R. D.","first_name":"R. D."},{"first_name":"B. J.","full_name":"Ramshaw, B. J.","last_name":"Ramshaw"},{"first_name":"Kimberly A","id":"13C26AC0-EB69-11E9-87C6-5F3BE6697425","full_name":"Modic, Kimberly A","orcid":"0000-0001-9760-3147","last_name":"Modic"}],"article_number":"035111","publication":"Physical Review B","day":"15","year":"2023","isi":1,"date_created":"2023-07-23T22:01:10Z","date_published":"2023-07-15T00:00:00Z","doi":"10.1103/PhysRevB.108.035111","acknowledgement":"We thank Aharon Kapitulnik, Philip Moll, and Andreas Rydh for illuminating discussions. The work at the Los Alamos National Laboratory is supported by National Science Foundation Cooperative Agreements No. DMR-1157490 and No. DMR-1644779, the state of Florida, and the U.S. Department of Energy. A.S. acknowledges support from the DOE/BES Science of 100T grant. B.J.R. acknowledges funding from the National Science Foundation under Grant No.\r\nDMR-1752784.","oa":1,"quality_controlled":"1","publisher":"American Physical Society"},{"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"chicago":"Næsborg, Line, Bartholomäus Pieber, and Oliver S. Wenger. “Special Collection: Photocatalytic Synthesis.” ChemCatChem. Wiley, 2023. https://doi.org/10.1002/cctc.202300683.","ista":"Næsborg L, Pieber B, Wenger OS. 2023. Special Collection: Photocatalytic synthesis. ChemCatChem., e202300683.","mla":"Næsborg, Line, et al. “Special Collection: Photocatalytic Synthesis.” ChemCatChem, e202300683, Wiley, 2023, doi:10.1002/cctc.202300683.","short":"L. Næsborg, B. Pieber, O.S. Wenger, ChemCatChem (2023).","ieee":"L. Næsborg, B. Pieber, and O. S. Wenger, “Special Collection: Photocatalytic synthesis,” ChemCatChem. Wiley, 2023.","apa":"Næsborg, L., Pieber, B., & Wenger, O. S. (2023). Special Collection: Photocatalytic synthesis. ChemCatChem. Wiley. https://doi.org/10.1002/cctc.202300683","ama":"Næsborg L, Pieber B, Wenger OS. Special Collection: Photocatalytic synthesis. ChemCatChem. 2023. doi:10.1002/cctc.202300683"},"title":"Special Collection: Photocatalytic synthesis","article_processing_charge":"No","external_id":{"isi":["001037859900001"]},"author":[{"last_name":"Næsborg","full_name":"Næsborg, Line","first_name":"Line"},{"orcid":"0000-0001-8689-388X","full_name":"Pieber, Bartholomäus","last_name":"Pieber","first_name":"Bartholomäus","id":"93e5e5b2-0da6-11ed-8a41-af589a024726"},{"first_name":"Oliver S.","full_name":"Wenger, Oliver S.","last_name":"Wenger"}],"article_number":"e202300683","publication":"ChemCatChem","day":"27","year":"2023","isi":1,"date_created":"2023-08-06T22:01:12Z","doi":"10.1002/cctc.202300683","date_published":"2023-07-27T00:00:00Z","oa":1,"publisher":"Wiley","quality_controlled":"1","date_updated":"2023-12-13T12:02:26Z","department":[{"_id":"BaPi"}],"_id":"13972","status":"public","type":"journal_article","article_type":"letter_note","language":[{"iso":"eng"}],"publication_status":"epub_ahead","publication_identifier":{"issn":["1867-3880"],"eissn":["1867-3899"]},"oa_version":"Published Version","abstract":[{"lang":"eng","text":"This Special Collection is dedicated to the field of photocatalytic synthesis and contains a diverse selection of original research contributions. It includes studies on catalyst development, mechanistic investigations, method development and the use of enabling technologies, illustrating the many facets of state-of-the-art research in photocatalytic synthesis. Further, emerging topics are surveyed and discussed in three reviews and a concept article."}],"month":"07","main_file_link":[{"url":"https://doi.org/10.1002/cctc.202300683","open_access":"1"}],"scopus_import":"1"},{"date_published":"2023-07-14T00:00:00Z","doi":"10.3389/fphy.2023.1202132","date_created":"2023-08-06T22:01:11Z","has_accepted_license":"1","isi":1,"year":"2023","day":"14","publication":"Frontiers in Physics","quality_controlled":"1","publisher":"Frontiers","oa":1,"acknowledgement":"This project has received funding from the European Union’s Horizon 2020 Research and Innovation Programme under the Marie Skłodowska-Curie grant agreement No. 813863–BORGES. We further thank the office of the Federal Government of Lower Austria, K3-Group–Culture, Science and Education, for their financial support as part of the project “Responsive Wound Dressing”. We gratefully acknowledge the financial support from the Austrian Research Promotion Agency (FFG; 888067).\r\nWe thank the Electron Microscopy Facility at IST Austria for their support with sputter coating the FO tips and Bernhard Pichler from AIT for software development to facilitate data evaluation.","author":[{"last_name":"Hasler","full_name":"Hasler, Roger","first_name":"Roger"},{"first_name":"Marie Helene","full_name":"Steger-Polt, Marie Helene","last_name":"Steger-Polt"},{"last_name":"Reiner-Rozman","full_name":"Reiner-Rozman, Ciril","first_name":"Ciril"},{"first_name":"Stefan","last_name":"Fossati","full_name":"Fossati, Stefan"},{"first_name":"Seungho","id":"BB243B88-D767-11E9-B658-BC13E6697425","last_name":"Lee","full_name":"Lee, Seungho","orcid":"0000-0002-6962-8598"},{"full_name":"Aspermair, Patrik","last_name":"Aspermair","first_name":"Patrik"},{"full_name":"Kleber, Christoph","last_name":"Kleber","first_name":"Christoph"},{"id":"43C61214-F248-11E8-B48F-1D18A9856A87","first_name":"Maria","last_name":"Ibáñez","orcid":"0000-0001-5013-2843","full_name":"Ibáñez, Maria"},{"first_name":"Jakub","full_name":"Dostalek, Jakub","last_name":"Dostalek"},{"first_name":"Wolfgang","full_name":"Knoll, Wolfgang","last_name":"Knoll"}],"external_id":{"isi":["001038636400001"]},"article_processing_charge":"Yes","title":"Optical and electronic signal stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing","citation":{"mla":"Hasler, Roger, et al. “Optical and Electronic Signal Stabilization of Plasmonic Fiber Optic Gate Electrodes: Towards Improved Real-Time Dual-Mode Biosensing.” Frontiers in Physics, vol. 11, 1202132, Frontiers, 2023, doi:10.3389/fphy.2023.1202132.","apa":"Hasler, R., Steger-Polt, M. H., Reiner-Rozman, C., Fossati, S., Lee, S., Aspermair, P., … Knoll, W. (2023). Optical and electronic signal stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing. Frontiers in Physics. Frontiers. https://doi.org/10.3389/fphy.2023.1202132","ama":"Hasler R, Steger-Polt MH, Reiner-Rozman C, et al. Optical and electronic signal stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing. Frontiers in Physics. 2023;11. doi:10.3389/fphy.2023.1202132","ieee":"R. Hasler et al., “Optical and electronic signal stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing,” Frontiers in Physics, vol. 11. Frontiers, 2023.","short":"R. Hasler, M.H. Steger-Polt, C. Reiner-Rozman, S. Fossati, S. Lee, P. Aspermair, C. Kleber, M. Ibáñez, J. Dostalek, W. Knoll, Frontiers in Physics 11 (2023).","chicago":"Hasler, Roger, Marie Helene Steger-Polt, Ciril Reiner-Rozman, Stefan Fossati, Seungho Lee, Patrik Aspermair, Christoph Kleber, Maria Ibáñez, Jakub Dostalek, and Wolfgang Knoll. “Optical and Electronic Signal Stabilization of Plasmonic Fiber Optic Gate Electrodes: Towards Improved Real-Time Dual-Mode Biosensing.” Frontiers in Physics. Frontiers, 2023. https://doi.org/10.3389/fphy.2023.1202132.","ista":"Hasler R, Steger-Polt MH, Reiner-Rozman C, Fossati S, Lee S, Aspermair P, Kleber C, Ibáñez M, Dostalek J, Knoll W. 2023. Optical and electronic signal stabilization of plasmonic fiber optic gate electrodes: Towards improved real-time dual-mode biosensing. Frontiers in Physics. 11, 1202132."},"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","article_number":"1202132","volume":11,"publication_identifier":{"eissn":["2296-424X"]},"publication_status":"published","file":[{"date_updated":"2023-08-07T07:48:11Z","file_size":2421758,"creator":"dernst","date_created":"2023-08-07T07:48:11Z","file_name":"2023_FrontiersPhysics_Hasler.pdf","content_type":"application/pdf","access_level":"open_access","relation":"main_file","file_id":"13978","checksum":"fb36dda665e57bab006a000bf0faacd5","success":1}],"language":[{"iso":"eng"}],"scopus_import":"1","month":"07","intvolume":" 11","abstract":[{"text":"The use of multimodal readout mechanisms next to label-free real-time monitoring of biomolecular interactions can provide valuable insight into surface-based reaction mechanisms. To this end, the combination of an electrolyte-gated field-effect transistor (EG-FET) with a fiber optic-coupled surface plasmon resonance (FO-SPR) probe serving as gate electrode has been investigated to deconvolute surface mass and charge density variations associated to surface reactions. However, applying an electrochemical potential on such gold-coated FO-SPR gate electrodes can induce gradual morphological changes of the thin gold film, leading to an irreversible blue-shift of the SPR wavelength and a substantial signal drift. We show that mild annealing leads to optical and electronic signal stabilization (20-fold lower signal drift than as-sputtered fiber optic gates) and improved overall analytical performance characteristics. The thermal treatment prevents morphological changes of the thin gold-film occurring during operation, hence providing reliable and stable data immediately upon gate voltage application. Thus, the readout output of both transducing principles, the optical FO-SPR and electronic EG-FET, stays constant throughout the whole sensing time-window and the long-term effect of thermal treatment is also improved, providing stable signals even after 1 year of storage. Annealing should therefore be considered a necessary modification for applying fiber optic gate electrodes in real-time multimodal investigations of surface reactions at the solid-liquid interface.","lang":"eng"}],"acknowledged_ssus":[{"_id":"EM-Fac"}],"oa_version":"Published Version","department":[{"_id":"MaIb"}],"file_date_updated":"2023-08-07T07:48:11Z","date_updated":"2023-12-13T12:04:10Z","ddc":["530"],"article_type":"original","type":"journal_article","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"status":"public","_id":"13968"},{"oa":1,"quality_controlled":"1","publisher":"Springer Nature","acknowledgement":"M. Bulíček and J. Málek acknowledge the support of the project No. 20-11027X financed by the Czech Science foundation (GAČR). M. Bulíček and J. Málek are members of the Nečas Center for Mathematical Modelling.\r\nOpen access publishing supported by the National Technical Library in Prague.","date_created":"2023-08-13T22:01:13Z","doi":"10.1007/s00021-023-00803-w","date_published":"2023-08-01T00:00:00Z","publication":"Journal of Mathematical Fluid Mechanics","day":"01","year":"2023","has_accepted_license":"1","isi":1,"article_number":"72","title":"On unsteady internal flows of incompressible fluids characterized by implicit constitutive equations in the bulk and on the boundary","external_id":{"isi":["001040354900001"],"arxiv":["2301.12834"]},"article_processing_charge":"Yes (via OA deal)","author":[{"full_name":"Bulíček, Miroslav","last_name":"Bulíček","first_name":"Miroslav"},{"first_name":"Josef","full_name":"Málek, Josef","last_name":"Málek"},{"full_name":"Maringová, Erika","last_name":"Maringová","first_name":"Erika","id":"dbabca31-66eb-11eb-963a-fb9c22c880b4"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"mla":"Bulíček, Miroslav, et al. “On Unsteady Internal Flows of Incompressible Fluids Characterized by Implicit Constitutive Equations in the Bulk and on the Boundary.” Journal of Mathematical Fluid Mechanics, vol. 25, no. 3, 72, Springer Nature, 2023, doi:10.1007/s00021-023-00803-w.","apa":"Bulíček, M., Málek, J., & Maringová, E. (2023). On unsteady internal flows of incompressible fluids characterized by implicit constitutive equations in the bulk and on the boundary. Journal of Mathematical Fluid Mechanics. Springer Nature. https://doi.org/10.1007/s00021-023-00803-w","ama":"Bulíček M, Málek J, Maringová E. On unsteady internal flows of incompressible fluids characterized by implicit constitutive equations in the bulk and on the boundary. Journal of Mathematical Fluid Mechanics. 2023;25(3). doi:10.1007/s00021-023-00803-w","ieee":"M. Bulíček, J. Málek, and E. Maringová, “On unsteady internal flows of incompressible fluids characterized by implicit constitutive equations in the bulk and on the boundary,” Journal of Mathematical Fluid Mechanics, vol. 25, no. 3. Springer Nature, 2023.","short":"M. Bulíček, J. Málek, E. Maringová, Journal of Mathematical Fluid Mechanics 25 (2023).","chicago":"Bulíček, Miroslav, Josef Málek, and Erika Maringová. “On Unsteady Internal Flows of Incompressible Fluids Characterized by Implicit Constitutive Equations in the Bulk and on the Boundary.” Journal of Mathematical Fluid Mechanics. Springer Nature, 2023. https://doi.org/10.1007/s00021-023-00803-w.","ista":"Bulíček M, Málek J, Maringová E. 2023. On unsteady internal flows of incompressible fluids characterized by implicit constitutive equations in the bulk and on the boundary. Journal of Mathematical Fluid Mechanics. 25(3), 72."},"intvolume":" 25","month":"08","scopus_import":"1","oa_version":"Published Version","abstract":[{"text":"Long-time and large-data existence of weak solutions for initial- and boundary-value problems concerning three-dimensional flows of incompressible fluids is nowadays available not only for Navier–Stokes fluids but also for various fluid models where the relation between the Cauchy stress tensor and the symmetric part of the velocity gradient is nonlinear. The majority of such studies however concerns models where such a dependence is explicit (the stress is a function of the velocity gradient), which makes the class of studied models unduly restrictive. The same concerns boundary conditions, or more precisely the slipping mechanisms on the boundary, where the no-slip is still the most preferred condition considered in the literature. Our main objective is to develop a robust mathematical theory for unsteady internal flows of implicitly constituted incompressible fluids with implicit relations between the tangential projections of the velocity and the normal traction on the boundary. The theory covers numerous rheological models used in chemistry, biorheology, polymer and food industry as well as in geomechanics. It also includes, as special cases, nonlinear slip as well as stick–slip boundary conditions. Unlike earlier studies, the conditions characterizing admissible classes of constitutive equations are expressed by means of tools of elementary calculus. In addition, a fully constructive proof (approximation scheme) is incorporated. Finally, we focus on the question of uniqueness of such weak solutions.","lang":"eng"}],"volume":25,"issue":"3","language":[{"iso":"eng"}],"file":[{"date_created":"2023-08-14T07:24:17Z","file_name":"2023_JourMathFluidMech_Bulicek.pdf","creator":"dernst","date_updated":"2023-08-14T07:24:17Z","file_size":845748,"file_id":"14046","checksum":"c549cd8f0dd02ed60477a05ca045f481","success":1,"access_level":"open_access","relation":"main_file","content_type":"application/pdf"}],"publication_status":"published","publication_identifier":{"eissn":["1422-6952"],"issn":["1422-6928"]},"status":"public","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"type":"journal_article","article_type":"original","_id":"14042","file_date_updated":"2023-08-14T07:24:17Z","department":[{"_id":"JuFi"}],"ddc":["510"],"date_updated":"2023-12-13T12:08:08Z"},{"date_created":"2023-08-13T22:01:13Z","doi":"10.1038/s42003-023-05181-7","date_published":"2023-08-04T00:00:00Z","publication":"Communications Biology","day":"04","year":"2023","isi":1,"has_accepted_license":"1","oa":1,"quality_controlled":"1","publisher":"Springer Nature","acknowledgement":"We thank Marton Gulyas (ELTE Eötvös University) for development of videomicroscopy experiment manager and image analysis software. Authors are grateful to Gabor Forgacs (University of Missouri) for critical reading of earlier versions of this manuscript as well as to Zsuzsa Akos and Andras Czirok (ELTE Eötvös University) for fruitful discussions. This work was supported by EU FP7, ERC COLLMOT Project No 227878 to TV, the National Research Development and Innovation Fund of Hungary, K119359 and also Project No 2018-1.2.1-NKP-2018-00005 to LN. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 955576. MV was supported by the Ja´nos Bolyai Fellowship of the Hungarian Academy of Sciences.\r\nOpen access funding provided by Eötvös Loránd University.","title":"3D cell segregation geometry and dynamics are governed by tissue surface tension regulation","article_processing_charge":"Yes","external_id":{"isi":["001042544100001"],"pmid":["37542157"]},"author":[{"last_name":"Méhes","full_name":"Méhes, Elod","first_name":"Elod"},{"first_name":"Enys","last_name":"Mones","full_name":"Mones, Enys"},{"first_name":"Máté","last_name":"Varga","full_name":"Varga, Máté"},{"first_name":"Áron","last_name":"Zsigmond","full_name":"Zsigmond, Áron"},{"last_name":"Biri-Kovács","full_name":"Biri-Kovács, Beáta","first_name":"Beáta"},{"last_name":"Nyitray","full_name":"Nyitray, László","first_name":"László"},{"id":"419EECCC-F248-11E8-B48F-1D18A9856A87","first_name":"Vanessa","orcid":"0000-0003-2676-3367","full_name":"Barone, Vanessa","last_name":"Barone"},{"last_name":"Krens","orcid":"0000-0003-4761-5996","full_name":"Krens, Gabriel","id":"2B819732-F248-11E8-B48F-1D18A9856A87","first_name":"Gabriel"},{"full_name":"Heisenberg, Carl-Philipp J","orcid":"0000-0002-0912-4566","last_name":"Heisenberg","id":"39427864-F248-11E8-B48F-1D18A9856A87","first_name":"Carl-Philipp J"},{"full_name":"Vicsek, Tamás","last_name":"Vicsek","first_name":"Tamás"}],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","citation":{"ieee":"E. Méhes et al., “3D cell segregation geometry and dynamics are governed by tissue surface tension regulation,” Communications Biology, vol. 6. Springer Nature, 2023.","short":"E. Méhes, E. Mones, M. Varga, Á. Zsigmond, B. Biri-Kovács, L. Nyitray, V. Barone, G. Krens, C.-P.J. Heisenberg, T. Vicsek, Communications Biology 6 (2023).","apa":"Méhes, E., Mones, E., Varga, M., Zsigmond, Á., Biri-Kovács, B., Nyitray, L., … Vicsek, T. (2023). 3D cell segregation geometry and dynamics are governed by tissue surface tension regulation. Communications Biology. Springer Nature. https://doi.org/10.1038/s42003-023-05181-7","ama":"Méhes E, Mones E, Varga M, et al. 3D cell segregation geometry and dynamics are governed by tissue surface tension regulation. Communications Biology. 2023;6. doi:10.1038/s42003-023-05181-7","mla":"Méhes, Elod, et al. “3D Cell Segregation Geometry and Dynamics Are Governed by Tissue Surface Tension Regulation.” Communications Biology, vol. 6, 817, Springer Nature, 2023, doi:10.1038/s42003-023-05181-7.","ista":"Méhes E, Mones E, Varga M, Zsigmond Á, Biri-Kovács B, Nyitray L, Barone V, Krens G, Heisenberg C-PJ, Vicsek T. 2023. 3D cell segregation geometry and dynamics are governed by tissue surface tension regulation. Communications Biology. 6, 817.","chicago":"Méhes, Elod, Enys Mones, Máté Varga, Áron Zsigmond, Beáta Biri-Kovács, László Nyitray, Vanessa Barone, Gabriel Krens, Carl-Philipp J Heisenberg, and Tamás Vicsek. “3D Cell Segregation Geometry and Dynamics Are Governed by Tissue Surface Tension Regulation.” Communications Biology. Springer Nature, 2023. https://doi.org/10.1038/s42003-023-05181-7."},"article_number":"817","volume":6,"language":[{"iso":"eng"}],"file":[{"success":1,"file_id":"14045","checksum":"1f9324f736bdbb76426b07736651c4cd","content_type":"application/pdf","relation":"main_file","access_level":"open_access","file_name":"2023_CommBiology_Mehes.pdf","date_created":"2023-08-14T07:17:36Z","file_size":10181997,"date_updated":"2023-08-14T07:17:36Z","creator":"dernst"}],"publication_status":"published","publication_identifier":{"eissn":["2399-3642"]},"intvolume":" 6","month":"08","scopus_import":"1","oa_version":"Published Version","pmid":1,"abstract":[{"text":"Tissue morphogenesis and patterning during development involve the segregation of cell types. Segregation is driven by differential tissue surface tensions generated by cell types through controlling cell-cell contact formation by regulating adhesion and actomyosin contractility-based cellular cortical tensions. We use vertebrate tissue cell types and zebrafish germ layer progenitors as in vitro models of 3-dimensional heterotypic segregation and developed a quantitative analysis of their dynamics based on 3D time-lapse microscopy. We show that general inhibition of actomyosin contractility by the Rho kinase inhibitor Y27632 delays segregation. Cell type-specific inhibition of non-muscle myosin2 activity by overexpression of myosin assembly inhibitor S100A4 reduces tissue surface tension, manifested in decreased compaction during aggregation and inverted geometry observed during segregation. The same is observed when we express a constitutively active Rho kinase isoform to ubiquitously keep actomyosin contractility high at cell-cell and cell-medium interfaces and thus overriding the interface-specific regulation of cortical tensions. Tissue surface tension regulation can become an effective tool in tissue engineering.","lang":"eng"}],"file_date_updated":"2023-08-14T07:17:36Z","department":[{"_id":"CaHe"},{"_id":"Bio"}],"ddc":["570"],"date_updated":"2023-12-13T12:07:33Z","status":"public","tmp":{"legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","image":"/images/cc_by.png","name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","short":"CC BY (4.0)"},"type":"journal_article","article_type":"original","_id":"14041"}]