[{"_id":"9381","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","intvolume":" 17","title":"Mistakes can stabilise the dynamics of rock-paper-scissors games","ddc":["000"],"status":"public","oa_version":"Published Version","file":[{"checksum":"a94ebe0c4116f5047eaa6029e54d2dac","success":1,"date_updated":"2021-05-11T13:50:06Z","date_created":"2021-05-11T13:50:06Z","relation":"main_file","file_id":"9385","content_type":"application/pdf","file_size":1323820,"creator":"kschuh","access_level":"open_access","file_name":"2021_pcbi_Kleshnina.pdf"}],"type":"journal_article","issue":"4","abstract":[{"lang":"eng","text":"A game of rock-paper-scissors is an interesting example of an interaction where none of the pure strategies strictly dominates all others, leading to a cyclic pattern. In this work, we consider an unstable version of rock-paper-scissors dynamics and allow individuals to make behavioural mistakes during the strategy execution. We show that such an assumption can break a cyclic relationship leading to a stable equilibrium emerging with only one strategy surviving. We consider two cases: completely random mistakes when individuals have no bias towards any strategy and a general form of mistakes. Then, we determine conditions for a strategy to dominate all other strategies. However, given that individuals who adopt a dominating strategy are still prone to behavioural mistakes in the observed behaviour, we may still observe extinct strategies. That is, behavioural mistakes in strategy execution stabilise evolutionary dynamics leading to an evolutionary stable and, potentially, mixed co-existence equilibrium."}],"citation":{"apa":"Kleshnina, M., Streipert, S. S., Filar, J. A., & Chatterjee, K. (2021). Mistakes can stabilise the dynamics of rock-paper-scissors games. PLoS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1008523","ieee":"M. Kleshnina, S. S. Streipert, J. A. Filar, and K. Chatterjee, “Mistakes can stabilise the dynamics of rock-paper-scissors games,” PLoS Computational Biology, vol. 17, no. 4. Public Library of Science, 2021.","ista":"Kleshnina M, Streipert SS, Filar JA, Chatterjee K. 2021. Mistakes can stabilise the dynamics of rock-paper-scissors games. PLoS Computational Biology. 17(4), e1008523.","ama":"Kleshnina M, Streipert SS, Filar JA, Chatterjee K. Mistakes can stabilise the dynamics of rock-paper-scissors games. PLoS Computational Biology. 2021;17(4). doi:10.1371/journal.pcbi.1008523","chicago":"Kleshnina, Maria, Sabrina S. Streipert, Jerzy A. Filar, and Krishnendu Chatterjee. “Mistakes Can Stabilise the Dynamics of Rock-Paper-Scissors Games.” PLoS Computational Biology. Public Library of Science, 2021. https://doi.org/10.1371/journal.pcbi.1008523.","short":"M. Kleshnina, S.S. Streipert, J.A. Filar, K. Chatterjee, PLoS Computational Biology 17 (2021).","mla":"Kleshnina, Maria, et al. “Mistakes Can Stabilise the Dynamics of Rock-Paper-Scissors Games.” PLoS Computational Biology, vol. 17, no. 4, e1008523, Public Library of Science, 2021, doi:10.1371/journal.pcbi.1008523."},"publication":"PLoS Computational Biology","article_type":"original","date_published":"2021-04-01T00:00:00Z","scopus_import":"1","has_accepted_license":"1","article_processing_charge":"No","day":"01","acknowledgement":"Authors would like to thank Christian Hilbe and Martin Nowak for their inspiring and very helpful feedback on the manuscript.","year":"2021","publisher":"Public Library of Science","department":[{"_id":"KrCh"}],"publication_status":"published","author":[{"full_name":"Kleshnina, Maria","first_name":"Maria","last_name":"Kleshnina","id":"4E21749C-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Streipert, Sabrina S.","first_name":"Sabrina S.","last_name":"Streipert"},{"full_name":"Filar, Jerzy A.","first_name":"Jerzy A.","last_name":"Filar"},{"orcid":"0000-0002-4561-241X","id":"2E5DCA20-F248-11E8-B48F-1D18A9856A87","last_name":"Chatterjee","first_name":"Krishnendu","full_name":"Chatterjee, Krishnendu"}],"volume":17,"date_updated":"2023-08-08T13:31:08Z","date_created":"2021-05-09T22:01:38Z","article_number":"e1008523","ec_funded":1,"file_date_updated":"2021-05-11T13:50:06Z","external_id":{"isi":["000639711200001"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"project":[{"call_identifier":"H2020","name":"ISTplus - Postdoctoral Fellowships","_id":"260C2330-B435-11E9-9278-68D0E5697425","grant_number":"754411"},{"grant_number":"863818","_id":"0599E47C-7A3F-11EA-A408-12923DDC885E","call_identifier":"H2020","name":"Formal Methods for Stochastic Models: Algorithms and Applications"}],"quality_controlled":"1","isi":1,"doi":"10.1371/journal.pcbi.1008523","language":[{"iso":"eng"}],"publication_identifier":{"issn":["1553734X"],"eissn":["15537358"]},"month":"04"},{"type":"journal_article","issue":"7","ddc":["613"],"title":"Ten simple rules to improve academic work- life balance","status":"public","intvolume":" 17","user_id":"4359f0d1-fa6c-11eb-b949-802e58b17ae8","_id":"9759","file":[{"checksum":"e56d91f0eeadb36f143a90e2c1b3ab63","date_updated":"2021-08-05T12:06:49Z","date_created":"2021-08-05T12:06:49Z","file_id":"9771","relation":"main_file","creator":"cchlebak","file_size":693633,"content_type":"application/pdf","access_level":"open_access","file_name":"2021_PlosCompBio_Bartlett.pdf"}],"oa_version":"Published Version","scopus_import":"1","day":"15","article_processing_charge":"Yes","has_accepted_license":"1","article_type":"letter_note","publication":"PLoS Computational Biology","citation":{"ama":"Bartlett MJ, Arslan FN, Bankston A, Sarabipour S. Ten simple rules to improve academic work- life balance. PLoS Computational Biology. 2021;17(7). doi:10.1371/journal.pcbi.1009124","apa":"Bartlett, M. J., Arslan, F. N., Bankston, A., & Sarabipour, S. (2021). Ten simple rules to improve academic work- life balance. PLoS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1009124","ieee":"M. J. Bartlett, F. N. Arslan, A. Bankston, and S. Sarabipour, “Ten simple rules to improve academic work- life balance,” PLoS Computational Biology, vol. 17, no. 7. Public Library of Science, 2021.","ista":"Bartlett MJ, Arslan FN, Bankston A, Sarabipour S. 2021. Ten simple rules to improve academic work- life balance. PLoS Computational Biology. 17(7), e1009124.","short":"M.J. Bartlett, F.N. Arslan, A. Bankston, S. Sarabipour, PLoS Computational Biology 17 (2021).","mla":"Bartlett, Michael John, et al. “Ten Simple Rules to Improve Academic Work- Life Balance.” PLoS Computational Biology, vol. 17, no. 7, e1009124, Public Library of Science, 2021, doi:10.1371/journal.pcbi.1009124.","chicago":"Bartlett, Michael John, Feyza N Arslan, Adriana Bankston, and Sarvenaz Sarabipour. “Ten Simple Rules to Improve Academic Work- Life Balance.” PLoS Computational Biology. Public Library of Science, 2021. https://doi.org/10.1371/journal.pcbi.1009124."},"date_published":"2021-07-15T00:00:00Z","article_number":"e1009124","file_date_updated":"2021-08-05T12:06:49Z","publication_status":"published","department":[{"_id":"CaHe"}],"publisher":"Public Library of Science","acknowledgement":"The authors thank Inez Lam of Johns Hopkins University for valuable comments on an earlier version of the manuscript. We also thank the facilitators of the 2019–2020 eLife Community Ambassador program.","year":"2021","pmid":1,"date_updated":"2023-08-10T14:16:46Z","date_created":"2021-08-01T22:01:21Z","volume":17,"author":[{"full_name":"Bartlett, Michael John","last_name":"Bartlett","first_name":"Michael John"},{"first_name":"Feyza N","last_name":"Arslan","id":"49DA7910-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5809-9566","full_name":"Arslan, Feyza N"},{"full_name":"Bankston, Adriana","first_name":"Adriana","last_name":"Bankston"},{"full_name":"Sarabipour, Sarvenaz","first_name":"Sarvenaz","last_name":"Sarabipour"}],"month":"07","publication_identifier":{"eissn":["15537358"],"issn":["1553734X"]},"isi":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"external_id":{"isi":["000677713500008"],"pmid":["34264932"]},"language":[{"iso":"eng"}],"doi":"10.1371/journal.pcbi.1009124"},{"language":[{"iso":"eng"}],"doi":"10.1371/journal.pcbi.1005763","quality_controlled":"1","project":[{"name":"Information processing and computation in fish groups","grant_number":"RGP0065/2012","_id":"255008E4-B435-11E9-9278-68D0E5697425"},{"name":"Sensitivity to higher-order statistics in natural scenes","call_identifier":"FWF","grant_number":"P 25651-N26","_id":"254D1A94-B435-11E9-9278-68D0E5697425"}],"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"month":"09","publication_identifier":{"issn":["1553734X"]},"date_updated":"2021-01-12T08:12:21Z","date_created":"2018-12-11T11:48:08Z","volume":13,"author":[{"full_name":"Humplik, Jan","last_name":"Humplik","first_name":"Jan","id":"2E9627A8-F248-11E8-B48F-1D18A9856A87"},{"full_name":"Tkacik, Gasper","last_name":"Tkacik","first_name":"Gasper","orcid":"0000-0002-6699-1455","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87"}],"publication_status":"published","department":[{"_id":"GaTk"}],"publisher":"Public Library of Science","year":"2017","file_date_updated":"2020-07-14T12:47:53Z","publist_id":"6960","article_number":"e1005763","date_published":"2017-09-19T00:00:00Z","publication":"PLoS Computational Biology","citation":{"ama":"Humplik J, Tkačik G. Probabilistic models for neural populations that naturally capture global coupling and criticality. PLoS Computational Biology. 2017;13(9). doi:10.1371/journal.pcbi.1005763","ista":"Humplik J, Tkačik G. 2017. Probabilistic models for neural populations that naturally capture global coupling and criticality. PLoS Computational Biology. 13(9), e1005763.","apa":"Humplik, J., & Tkačik, G. (2017). Probabilistic models for neural populations that naturally capture global coupling and criticality. PLoS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1005763","ieee":"J. Humplik and G. Tkačik, “Probabilistic models for neural populations that naturally capture global coupling and criticality,” PLoS Computational Biology, vol. 13, no. 9. Public Library of Science, 2017.","mla":"Humplik, Jan, and Gašper Tkačik. “Probabilistic Models for Neural Populations That Naturally Capture Global Coupling and Criticality.” PLoS Computational Biology, vol. 13, no. 9, e1005763, Public Library of Science, 2017, doi:10.1371/journal.pcbi.1005763.","short":"J. Humplik, G. Tkačik, PLoS Computational Biology 13 (2017).","chicago":"Humplik, Jan, and Gašper Tkačik. “Probabilistic Models for Neural Populations That Naturally Capture Global Coupling and Criticality.” PLoS Computational Biology. Public Library of Science, 2017. https://doi.org/10.1371/journal.pcbi.1005763."},"day":"19","has_accepted_license":"1","article_processing_charge":"Yes","scopus_import":1,"oa_version":"Published Version","file":[{"date_updated":"2020-07-14T12:47:53Z","date_created":"2018-12-12T10:18:30Z","checksum":"81107096c19771c36ddbe6f0282a3acb","file_id":"5352","relation":"main_file","creator":"system","content_type":"application/pdf","file_size":14167050,"file_name":"IST-2017-884-v1+1_journal.pcbi.1005763.pdf","access_level":"open_access"}],"pubrep_id":"884","status":"public","title":"Probabilistic models for neural populations that naturally capture global coupling and criticality","ddc":["530","571"],"intvolume":" 13","user_id":"3E5EF7F0-F248-11E8-B48F-1D18A9856A87","_id":"720","abstract":[{"lang":"eng","text":"Advances in multi-unit recordings pave the way for statistical modeling of activity patterns in large neural populations. Recent studies have shown that the summed activity of all neurons strongly shapes the population response. A separate recent finding has been that neural populations also exhibit criticality, an anomalously large dynamic range for the probabilities of different population activity patterns. Motivated by these two observations, we introduce a class of probabilistic models which takes into account the prior knowledge that the neural population could be globally coupled and close to critical. These models consist of an energy function which parametrizes interactions between small groups of neurons, and an arbitrary positive, strictly increasing, and twice differentiable function which maps the energy of a population pattern to its probability. We show that: 1) augmenting a pairwise Ising model with a nonlinearity yields an accurate description of the activity of retinal ganglion cells which outperforms previous models based on the summed activity of neurons; 2) prior knowledge that the population is critical translates to prior expectations about the shape of the nonlinearity; 3) the nonlinearity admits an interpretation in terms of a continuous latent variable globally coupling the system whose distribution we can infer from data. Our method is independent of the underlying system’s state space; hence, it can be applied to other systems such as natural scenes or amino acid sequences of proteins which are also known to exhibit criticality."}],"issue":"9","type":"journal_article"},{"citation":{"chicago":"Chalk, Matthew J, Paul Masset, Boris Gutkin, and Sophie Denève. “Sensory Noise Predicts Divisive Reshaping of Receptive Fields.” PLoS Computational Biology. Public Library of Science, 2017. https://doi.org/10.1371/journal.pcbi.1005582.","mla":"Chalk, Matthew J., et al. “Sensory Noise Predicts Divisive Reshaping of Receptive Fields.” PLoS Computational Biology, vol. 13, no. 6, e1005582, Public Library of Science, 2017, doi:10.1371/journal.pcbi.1005582.","short":"M.J. Chalk, P. Masset, B. Gutkin, S. Denève, PLoS Computational Biology 13 (2017).","ista":"Chalk MJ, Masset P, Gutkin B, Denève S. 2017. Sensory noise predicts divisive reshaping of receptive fields. PLoS Computational Biology. 13(6), e1005582.","ieee":"M. J. Chalk, P. Masset, B. Gutkin, and S. Denève, “Sensory noise predicts divisive reshaping of receptive fields,” PLoS Computational Biology, vol. 13, no. 6. Public Library of Science, 2017.","apa":"Chalk, M. J., Masset, P., Gutkin, B., & Denève, S. (2017). Sensory noise predicts divisive reshaping of receptive fields. PLoS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1005582","ama":"Chalk MJ, Masset P, Gutkin B, Denève S. Sensory noise predicts divisive reshaping of receptive fields. PLoS Computational Biology. 2017;13(6). doi:10.1371/journal.pcbi.1005582"},"publication":"PLoS Computational Biology","date_published":"2017-06-01T00:00:00Z","scopus_import":1,"has_accepted_license":"1","day":"01","intvolume":" 13","ddc":["571"],"status":"public","title":"Sensory noise predicts divisive reshaping of receptive fields","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"680","file":[{"date_created":"2018-12-12T10:07:47Z","date_updated":"2020-07-14T12:47:40Z","checksum":"796a1026076af6f4405a47d985bc7b68","file_id":"4645","relation":"main_file","creator":"system","content_type":"application/pdf","file_size":14555676,"file_name":"IST-2017-898-v1+1_journal.pcbi.1005582.pdf","access_level":"open_access"}],"oa_version":"Published Version","pubrep_id":"898","type":"journal_article","issue":"6","abstract":[{"lang":"eng","text":"In order to respond reliably to specific features of their environment, sensory neurons need to integrate multiple incoming noisy signals. Crucially, they also need to compete for the interpretation of those signals with other neurons representing similar features. The form that this competition should take depends critically on the noise corrupting these signals. In this study we show that for the type of noise commonly observed in sensory systems, whose variance scales with the mean signal, sensory neurons should selectively divide their input signals by their predictions, suppressing ambiguous cues while amplifying others. Any change in the stimulus context alters which inputs are suppressed, leading to a deep dynamic reshaping of neural receptive fields going far beyond simple surround suppression. Paradoxically, these highly variable receptive fields go alongside and are in fact required for an invariant representation of external sensory features. In addition to offering a normative account of context-dependent changes in sensory responses, perceptual inference in the presence of signal-dependent noise accounts for ubiquitous features of sensory neurons such as divisive normalization, gain control and contrast dependent temporal dynamics."}],"quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"language":[{"iso":"eng"}],"doi":"10.1371/journal.pcbi.1005582","publication_identifier":{"issn":["1553734X"]},"month":"06","department":[{"_id":"GaTk"}],"publisher":"Public Library of Science","publication_status":"published","year":"2017","volume":13,"date_updated":"2023-02-23T14:10:54Z","date_created":"2018-12-11T11:47:53Z","related_material":{"record":[{"status":"public","relation":"research_data","id":"9855"}]},"author":[{"full_name":"Chalk, Matthew J","orcid":"0000-0001-7782-4436","id":"2BAAC544-F248-11E8-B48F-1D18A9856A87","last_name":"Chalk","first_name":"Matthew J"},{"full_name":"Masset, Paul","first_name":"Paul","last_name":"Masset"},{"last_name":"Gutkin","first_name":"Boris","full_name":"Gutkin, Boris"},{"last_name":"Denève","first_name":"Sophie","full_name":"Denève, Sophie"}],"article_number":"e1005582","publist_id":"7035","file_date_updated":"2020-07-14T12:47:40Z"},{"scopus_import":1,"has_accepted_license":"1","day":"18","citation":{"chicago":"Lukacisinova, Marta, Sebastian Novak, and Tiago Paixao. “Stress Induced Mutagenesis: Stress Diversity Facilitates the Persistence of Mutator Genes.” PLoS Computational Biology. Public Library of Science, 2017. https://doi.org/10.1371/journal.pcbi.1005609.","mla":"Lukacisinova, Marta, et al. “Stress Induced Mutagenesis: Stress Diversity Facilitates the Persistence of Mutator Genes.” PLoS Computational Biology, vol. 13, no. 7, e1005609, Public Library of Science, 2017, doi:10.1371/journal.pcbi.1005609.","short":"M. Lukacisinova, S. Novak, T. Paixao, PLoS Computational Biology 13 (2017).","ista":"Lukacisinova M, Novak S, Paixao T. 2017. Stress induced mutagenesis: Stress diversity facilitates the persistence of mutator genes. PLoS Computational Biology. 13(7), e1005609.","ieee":"M. Lukacisinova, S. Novak, and T. Paixao, “Stress induced mutagenesis: Stress diversity facilitates the persistence of mutator genes,” PLoS Computational Biology, vol. 13, no. 7. Public Library of Science, 2017.","apa":"Lukacisinova, M., Novak, S., & Paixao, T. (2017). Stress induced mutagenesis: Stress diversity facilitates the persistence of mutator genes. PLoS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1005609","ama":"Lukacisinova M, Novak S, Paixao T. Stress induced mutagenesis: Stress diversity facilitates the persistence of mutator genes. PLoS Computational Biology. 2017;13(7). doi:10.1371/journal.pcbi.1005609"},"publication":"PLoS Computational Biology","article_type":"original","date_published":"2017-07-18T00:00:00Z","type":"journal_article","issue":"7","abstract":[{"lang":"eng","text":"Mutator strains are expected to evolve when the availability and effect of beneficial mutations are high enough to counteract the disadvantage from deleterious mutations that will inevitably accumulate. As the population becomes more adapted to its environment, both availability and effect of beneficial mutations necessarily decrease and mutation rates are predicted to decrease. It has been shown that certain molecular mechanisms can lead to increased mutation rates when the organism finds itself in a stressful environment. While this may be a correlated response to other functions, it could also be an adaptive mechanism, raising mutation rates only when it is most advantageous. Here, we use a mathematical model to investigate the plausibility of the adaptive hypothesis. We show that such a mechanism can be mantained if the population is subjected to diverse stresses. By simulating various antibiotic treatment schemes, we find that combination treatments can reduce the effectiveness of second-order selection on stress-induced mutagenesis. We discuss the implications of our results to strategies of antibiotic therapy."}],"_id":"696","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","intvolume":" 13","title":"Stress induced mutagenesis: Stress diversity facilitates the persistence of mutator genes","status":"public","ddc":["576"],"pubrep_id":"894","oa_version":"Published Version","file":[{"file_name":"IST-2017-894-v1+1_journal.pcbi.1005609.pdf","access_level":"open_access","creator":"system","file_size":3775716,"content_type":"application/pdf","file_id":"5117","relation":"main_file","date_created":"2018-12-12T10:15:01Z","date_updated":"2020-07-14T12:47:46Z","checksum":"9143c290fa6458ed2563bff4b295554a"}],"publication_identifier":{"issn":["1553734X"]},"month":"07","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"project":[{"_id":"25B1EC9E-B435-11E9-9278-68D0E5697425","grant_number":"618091","call_identifier":"FP7","name":"Speed of Adaptation in Population Genetics and Evolutionary Computation"}],"quality_controlled":"1","doi":"10.1371/journal.pcbi.1005609","language":[{"iso":"eng"}],"article_number":"e1005609","ec_funded":1,"publist_id":"7004","file_date_updated":"2020-07-14T12:47:46Z","year":"2017","publisher":"Public Library of Science","department":[{"_id":"ToBo"},{"_id":"NiBa"},{"_id":"CaGu"}],"publication_status":"published","related_material":{"record":[{"id":"9849","relation":"research_data","status":"public"},{"id":"9850","relation":"research_data","status":"public"},{"id":"9851","status":"public","relation":"research_data"},{"status":"public","relation":"research_data","id":"9852"},{"id":"6263","status":"public","relation":"dissertation_contains"}]},"author":[{"first_name":"Marta","last_name":"Lukacisinova","id":"4342E402-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2519-8004","full_name":"Lukacisinova, Marta"},{"full_name":"Novak, Sebastian","first_name":"Sebastian","last_name":"Novak","id":"461468AE-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-2519-824X"},{"full_name":"Paixao, Tiago","first_name":"Tiago","last_name":"Paixao","id":"2C5658E6-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0003-2361-3953"}],"volume":13,"date_updated":"2024-03-28T23:30:28Z","date_created":"2018-12-11T11:47:58Z"},{"intvolume":" 10","ddc":["570"],"title":"Searching for collective behavior in a large network of sensory neurons","status":"public","_id":"2257","user_id":"4435EBFC-F248-11E8-B48F-1D18A9856A87","file":[{"file_size":2194790,"content_type":"application/pdf","creator":"system","access_level":"open_access","file_name":"IST-2016-436-v1+1_journal.pcbi.1003408.pdf","checksum":"c720222c5e924a4acb17f23b9381a6ca","date_updated":"2020-07-14T12:45:35Z","date_created":"2018-12-12T10:12:46Z","relation":"main_file","file_id":"4965"}],"oa_version":"Published Version","pubrep_id":"436","type":"journal_article","issue":"1","abstract":[{"text":"Maximum entropy models are the least structured probability distributions that exactly reproduce a chosen set of statistics measured in an interacting network. Here we use this principle to construct probabilistic models which describe the correlated spiking activity of populations of up to 120 neurons in the salamander retina as it responds to natural movies. Already in groups as small as 10 neurons, interactions between spikes can no longer be regarded as small perturbations in an otherwise independent system; for 40 or more neurons pairwise interactions need to be supplemented by a global interaction that controls the distribution of synchrony in the population. Here we show that such “K-pairwise” models—being systematic extensions of the previously used pairwise Ising models—provide an excellent account of the data. We explore the properties of the neural vocabulary by: 1) estimating its entropy, which constrains the population's capacity to represent visual information; 2) classifying activity patterns into a small set of metastable collective modes; 3) showing that the neural codeword ensembles are extremely inhomogenous; 4) demonstrating that the state of individual neurons is highly predictable from the rest of the population, allowing the capacity for error correction.","lang":"eng"}],"citation":{"ama":"Tkačik G, Marre O, Amodei D, Schneidman E, Bialek W, Berry M. Searching for collective behavior in a large network of sensory neurons. PLoS Computational Biology. 2014;10(1). doi:10.1371/journal.pcbi.1003408","ieee":"G. Tkačik, O. Marre, D. Amodei, E. Schneidman, W. Bialek, and M. Berry, “Searching for collective behavior in a large network of sensory neurons,” PLoS Computational Biology, vol. 10, no. 1. Public Library of Science, 2014.","apa":"Tkačik, G., Marre, O., Amodei, D., Schneidman, E., Bialek, W., & Berry, M. (2014). Searching for collective behavior in a large network of sensory neurons. PLoS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1003408","ista":"Tkačik G, Marre O, Amodei D, Schneidman E, Bialek W, Berry M. 2014. Searching for collective behavior in a large network of sensory neurons. PLoS Computational Biology. 10(1), e1003408.","short":"G. Tkačik, O. Marre, D. Amodei, E. Schneidman, W. Bialek, M. Berry, PLoS Computational Biology 10 (2014).","mla":"Tkačik, Gašper, et al. “Searching for Collective Behavior in a Large Network of Sensory Neurons.” PLoS Computational Biology, vol. 10, no. 1, e1003408, Public Library of Science, 2014, doi:10.1371/journal.pcbi.1003408.","chicago":"Tkačik, Gašper, Olivier Marre, Dario Amodei, Elad Schneidman, William Bialek, and Michael Berry. “Searching for Collective Behavior in a Large Network of Sensory Neurons.” PLoS Computational Biology. Public Library of Science, 2014. https://doi.org/10.1371/journal.pcbi.1003408."},"publication":"PLoS Computational Biology","date_published":"2014-01-02T00:00:00Z","scopus_import":1,"has_accepted_license":"1","day":"02","publisher":"Public Library of Science","department":[{"_id":"GaTk"}],"publication_status":"published","year":"2014","acknowledgement":"\r\n\r\n\r\n\r\nThis work was funded by NSF grant IIS-0613435, NSF grant PHY-0957573, NSF grant CCF-0939370, NIH grant R01 EY14196, NIH grant P50 GM071508, the Fannie and John Hertz Foundation, the Swartz Foundation, the WM Keck Foundation, ANR Optima and the French State program “Investissements d'Avenir” [LIFESENSES: ANR-10-LABX-65], and the Austrian Research Foundation FWF P25651.","volume":10,"date_created":"2018-12-11T11:56:36Z","date_updated":"2024-02-21T13:46:14Z","related_material":{"record":[{"status":"public","relation":"popular_science","id":"5562"}]},"author":[{"full_name":"Tkacik, Gasper","orcid":"0000-0002-6699-1455","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","last_name":"Tkacik","first_name":"Gasper"},{"full_name":"Marre, Olivier","last_name":"Marre","first_name":"Olivier"},{"last_name":"Amodei","first_name":"Dario","full_name":"Amodei, Dario"},{"first_name":"Elad","last_name":"Schneidman","full_name":"Schneidman, Elad"},{"first_name":"William","last_name":"Bialek","full_name":"Bialek, William"},{"full_name":"Berry, Michael","last_name":"Berry","first_name":"Michael"}],"article_number":"e1003408","publist_id":"4689","file_date_updated":"2020-07-14T12:45:35Z","quality_controlled":"1","tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"main_file_link":[{"url":"http://repository.ist.ac.at/id/eprint/436","open_access":"1"}],"language":[{"iso":"eng"}],"doi":"10.1371/journal.pcbi.1003408","publication_identifier":{"issn":["1553734X"]},"month":"01"}]