--- _id: '9418' abstract: - lang: eng text: "Deep learning is best known for its empirical success across a wide range of applications\r\nspanning computer vision, natural language processing and speech. Of equal significance,\r\nthough perhaps less known, are its ramifications for learning theory: deep networks have\r\nbeen observed to perform surprisingly well in the high-capacity regime, aka the overfitting\r\nor underspecified regime. Classically, this regime on the far right of the bias-variance curve\r\nis associated with poor generalisation; however, recent experiments with deep networks\r\nchallenge this view.\r\n\r\nThis thesis is devoted to investigating various aspects of underspecification in deep learning.\r\nFirst, we argue that deep learning models are underspecified on two levels: a) any given\r\ntraining dataset can be fit by many different functions, and b) any given function can be\r\nexpressed by many different parameter configurations. We refer to the second kind of\r\nunderspecification as parameterisation redundancy and we precisely characterise its extent.\r\nSecond, we characterise the implicit criteria (the inductive bias) that guide learning in the\r\nunderspecified regime. Specifically, we consider a nonlinear but tractable classification\r\nsetting, and show that given the choice, neural networks learn classifiers with a large margin.\r\nThird, we consider learning scenarios where the inductive bias is not by itself sufficient to\r\ndeal with underspecification. We then study different ways of ‘tightening the specification’: i)\r\nIn the setting of representation learning with variational autoencoders, we propose a hand-\r\ncrafted regulariser based on mutual information. ii) In the setting of binary classification, we\r\nconsider soft-label (real-valued) supervision. We derive a generalisation bound for linear\r\nnetworks supervised in this way and verify that soft labels facilitate fast learning. Finally, we\r\nexplore an application of soft-label supervision to the training of multi-exit models." acknowledged_ssus: - _id: ScienComp - _id: CampIT - _id: E-Lib alternative_title: - ISTA Thesis article_processing_charge: No author: - first_name: Phuong full_name: Bui Thi Mai, Phuong id: 3EC6EE64-F248-11E8-B48F-1D18A9856A87 last_name: Bui Thi Mai citation: ama: Phuong M. Underspecification in deep learning. 2021. doi:10.15479/AT:ISTA:9418 apa: Phuong, M. (2021). Underspecification in deep learning. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:9418 chicago: Phuong, Mary. “Underspecification in Deep Learning.” Institute of Science and Technology Austria, 2021. https://doi.org/10.15479/AT:ISTA:9418. ieee: M. Phuong, “Underspecification in deep learning,” Institute of Science and Technology Austria, 2021. ista: Phuong M. 2021. Underspecification in deep learning. Institute of Science and Technology Austria. mla: Phuong, Mary. Underspecification in Deep Learning. Institute of Science and Technology Austria, 2021, doi:10.15479/AT:ISTA:9418. short: M. Phuong, Underspecification in Deep Learning, Institute of Science and Technology Austria, 2021. date_created: 2021-05-24T13:06:23Z date_published: 2021-05-30T00:00:00Z date_updated: 2023-09-08T11:11:12Z day: '30' ddc: - '000' degree_awarded: PhD department: - _id: GradSch - _id: ChLa doi: 10.15479/AT:ISTA:9418 file: - access_level: open_access checksum: 4f0abe64114cfed264f9d36e8d1197e3 content_type: application/pdf creator: bphuong date_created: 2021-05-24T11:22:29Z date_updated: 2021-05-24T11:22:29Z file_id: '9419' file_name: mph-thesis-v519-pdfimages.pdf file_size: 2673905 relation: main_file success: 1 - access_level: closed checksum: f5699e876bc770a9b0df8345a77720a2 content_type: application/zip creator: bphuong date_created: 2021-05-24T11:56:02Z date_updated: 2021-05-24T11:56:02Z file_id: '9420' file_name: thesis.zip file_size: 92995100 relation: source_file file_date_updated: 2021-05-24T11:56:02Z has_accepted_license: '1' language: - iso: eng month: '05' oa: 1 oa_version: Published Version page: '125' publication_identifier: issn: - 2663-337X publication_status: published publisher: Institute of Science and Technology Austria related_material: record: - id: '7435' relation: part_of_dissertation status: deleted - id: '7481' relation: part_of_dissertation status: public - id: '9416' relation: part_of_dissertation status: public - id: '7479' relation: part_of_dissertation status: public status: public supervisor: - first_name: Christoph full_name: Lampert, Christoph id: 40C20FD2-F248-11E8-B48F-1D18A9856A87 last_name: Lampert orcid: 0000-0001-8622-7887 title: Underspecification in deep learning type: dissertation user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1 year: '2021' ... --- _id: '14278' abstract: - lang: eng text: 'The Birkhoff conjecture says that the boundary of a strictly convex integrable billiard table is necessarily an ellipse. In this article, we consider a stronger notion of integrability, namely, integrability close to the boundary, and prove a local version of this conjecture: a small perturbation of almost every ellipse that preserves integrability near the boundary, is itself an ellipse. We apply this result to study local spectral rigidity of ellipses using the connection between the wave trace of the Laplacian and the dynamics near the boundary and establish rigidity for almost all of them.' article_number: '2111.12171' article_processing_charge: No author: - first_name: Illya full_name: Koval, Illya id: 2eed1f3b-896a-11ed-bdf8-93c7c4bf159e last_name: Koval citation: ama: Koval I. Local strong Birkhoff conjecture and local spectral rigidity of almost every ellipse. arXiv. doi:10.48550/ARXIV.2111.12171 apa: Koval, I. (n.d.). Local strong Birkhoff conjecture and local spectral rigidity of almost every ellipse. arXiv. https://doi.org/10.48550/ARXIV.2111.12171 chicago: Koval, Illya. “Local Strong Birkhoff Conjecture and Local Spectral Rigidity of Almost Every Ellipse.” ArXiv, n.d. https://doi.org/10.48550/ARXIV.2111.12171. ieee: I. Koval, “Local strong Birkhoff conjecture and local spectral rigidity of almost every ellipse,” arXiv. . ista: Koval I. Local strong Birkhoff conjecture and local spectral rigidity of almost every ellipse. arXiv, 2111.12171. mla: Koval, Illya. “Local Strong Birkhoff Conjecture and Local Spectral Rigidity of Almost Every Ellipse.” ArXiv, 2111.12171, doi:10.48550/ARXIV.2111.12171. short: I. Koval, ArXiv (n.d.). date_created: 2023-09-06T08:35:43Z date_published: 2021-11-23T00:00:00Z date_updated: 2023-09-15T06:44:00Z day: '23' department: - _id: GradSch doi: 10.48550/ARXIV.2111.12171 external_id: arxiv: - '2111.12171' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.48550/arXiv.2111.12171 month: '11' oa: 1 oa_version: Preprint publication: arXiv publication_status: submitted status: public title: Local strong Birkhoff conjecture and local spectral rigidity of almost every ellipse type: preprint user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2021' ... --- _id: '10199' abstract: - lang: eng text: The design and verification of concurrent systems remains an open challenge due to the non-determinism that arises from the inter-process communication. In particular, concurrent programs are notoriously difficult both to be written correctly and to be analyzed formally, as complex thread interaction has to be accounted for. The difficulties are further exacerbated when concurrent programs get executed on modern-day hardware, which contains various buffering and caching mechanisms for efficiency reasons. This causes further subtle non-determinism, which can often produce very unintuitive behavior of the concurrent programs. Model checking is at the forefront of tackling the verification problem, where the task is to decide, given as input a concurrent system and a desired property, whether the system satisfies the property. The inherent state-space explosion problem in model checking of concurrent systems causes naïve explicit methods not to scale, thus more inventive methods are required. One such method is stateless model checking (SMC), which explores in memory-efficient manner the program executions rather than the states of the program. State-of-the-art SMC is typically coupled with partial order reduction (POR) techniques, which argue that certain executions provably produce identical system behavior, thus limiting the amount of executions one needs to explore in order to cover all possible behaviors. Another method to tackle the state-space explosion is symbolic model checking, where the considered techniques operate on a succinct implicit representation of the input system rather than explicitly accessing the system. In this thesis we present new techniques for verification of concurrent systems. We present several novel POR methods for SMC of concurrent programs under various models of semantics, some of which account for write-buffering mechanisms. Additionally, we present novel algorithms for symbolic model checking of finite-state concurrent systems, where the desired property of the systems is to ensure a formally defined notion of fairness. acknowledged_ssus: - _id: SSU alternative_title: - ISTA Thesis article_processing_charge: No author: - first_name: Viktor full_name: Toman, Viktor id: 3AF3DA7C-F248-11E8-B48F-1D18A9856A87 last_name: Toman orcid: 0000-0001-9036-063X citation: ama: Toman V. Improved verification techniques for concurrent systems. 2021. doi:10.15479/at:ista:10199 apa: Toman, V. (2021). Improved verification techniques for concurrent systems. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:10199 chicago: Toman, Viktor. “Improved Verification Techniques for Concurrent Systems.” Institute of Science and Technology Austria, 2021. https://doi.org/10.15479/at:ista:10199. ieee: V. Toman, “Improved verification techniques for concurrent systems,” Institute of Science and Technology Austria, 2021. ista: Toman V. 2021. Improved verification techniques for concurrent systems. Institute of Science and Technology Austria. mla: Toman, Viktor. Improved Verification Techniques for Concurrent Systems. Institute of Science and Technology Austria, 2021, doi:10.15479/at:ista:10199. short: V. Toman, Improved Verification Techniques for Concurrent Systems, Institute of Science and Technology Austria, 2021. date_created: 2021-10-29T20:09:01Z date_published: 2021-10-31T00:00:00Z date_updated: 2023-09-19T09:59:54Z day: '31' ddc: - '000' degree_awarded: PhD department: - _id: GradSch - _id: KrCh doi: 10.15479/at:ista:10199 ec_funded: 1 file: - access_level: open_access checksum: 4f412a1ee60952221b499a4b1268df35 content_type: application/pdf creator: vtoman date_created: 2021-11-08T14:12:22Z date_updated: 2021-11-08T14:12:22Z file_id: '10225' file_name: toman_th_final.pdf file_size: 2915234 relation: main_file - access_level: closed checksum: 9584943f99127be2dd2963f6784c37d4 content_type: application/zip creator: vtoman date_created: 2021-11-08T14:12:46Z date_updated: 2021-11-09T09:00:50Z file_id: '10226' file_name: toman_thesis.zip file_size: 8616056 relation: source_file file_date_updated: 2021-11-09T09:00:50Z has_accepted_license: '1' keyword: - concurrency - verification - model checking language: - iso: eng month: '10' oa: 1 oa_version: Published Version page: '166' project: - _id: 2564DBCA-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '665385' name: International IST Doctoral Program - _id: 25F2ACDE-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: S11402-N23 name: Rigorous Systems Engineering - _id: 25892FC0-B435-11E9-9278-68D0E5697425 grant_number: ICT15-003 name: Efficient Algorithms for Computer Aided Verification - _id: 0599E47C-7A3F-11EA-A408-12923DDC885E call_identifier: H2020 grant_number: '863818' name: 'Formal Methods for Stochastic Models: Algorithms and Applications' publication_identifier: issn: - 2663-337X publication_status: published publisher: Institute of Science and Technology Austria related_material: record: - id: '10190' relation: part_of_dissertation status: public - id: '10191' relation: part_of_dissertation status: public - id: '9987' relation: part_of_dissertation status: public - id: '141' relation: part_of_dissertation status: public status: public supervisor: - first_name: Krishnendu full_name: Chatterjee, Krishnendu id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87 last_name: Chatterjee orcid: 0000-0002-4561-241X title: Improved verification techniques for concurrent systems type: dissertation user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1 year: '2021' ... --- _id: '8429' abstract: - lang: eng text: We develop a Bayesian model (BayesRR-RC) that provides robust SNP-heritability estimation, an alternative to marker discovery, and accurate genomic prediction, taking 22 seconds per iteration to estimate 8.4 million SNP-effects and 78 SNP-heritability parameters in the UK Biobank. We find that only ≤10% of the genetic variation captured for height, body mass index, cardiovascular disease, and type 2 diabetes is attributable to proximal regulatory regions within 10kb upstream of genes, while 12-25% is attributed to coding regions, 32–44% to introns, and 22-28% to distal 10-500kb upstream regions. Up to 24% of all cis and coding regions of each chromosome are associated with each trait, with over 3,100 independent exonic and intronic regions and over 5,400 independent regulatory regions having ≥95% probability of contributing ≥0.001% to the genetic variance of these four traits. Our open-source software (GMRM) provides a scalable alternative to current approaches for biobank data. acknowledgement: This project was funded by an SNSF Eccellenza Grant to MRR (PCEGP3-181181), and by core funding from the Institute of Science and Technology Austria. We would like to thank the participants of the cohort studies, and the Ecole Polytechnique Federal Lausanne (EPFL) SCITAS for their excellent compute resources, their generosity with their time and the kindness of their support. P.M.V. acknowledges funding from the Australian National Health and Medical Research Council (1113400) and the Australian Research Council (FL180100072). L.R. acknowledges funding from the Kjell & Märta Beijer Foundation (Stockholm, Sweden). We also would like to acknowledge Simone Rubinacci, Oliver Delanau, Alexander Terenin, Eleonora Porcu, and Mike Goddard for their useful comments and suggestions. article_number: '6972' article_processing_charge: No article_type: original author: - first_name: Marion full_name: Patxot, Marion last_name: Patxot - first_name: Daniel full_name: Trejo Banos, Daniel last_name: Trejo Banos - first_name: Athanasios full_name: Kousathanas, Athanasios last_name: Kousathanas - first_name: Etienne J full_name: Orliac, Etienne J last_name: Orliac - first_name: Sven E full_name: Ojavee, Sven E last_name: Ojavee - first_name: Gerhard full_name: Moser, Gerhard last_name: Moser - first_name: Julia full_name: Sidorenko, Julia last_name: Sidorenko - first_name: Zoltan full_name: Kutalik, Zoltan last_name: Kutalik - first_name: Reedik full_name: Magi, Reedik last_name: Magi - first_name: Peter M full_name: Visscher, Peter M last_name: Visscher - first_name: Lars full_name: Ronnegard, Lars last_name: Ronnegard - first_name: Matthew Richard full_name: Robinson, Matthew Richard id: E5D42276-F5DA-11E9-8E24-6303E6697425 last_name: Robinson orcid: 0000-0001-8982-8813 citation: ama: Patxot M, Trejo Banos D, Kousathanas A, et al. Probabilistic inference of the genetic architecture underlying functional enrichment of complex traits. Nature Communications. 2021;12(1). doi:10.1038/s41467-021-27258-9 apa: Patxot, M., Trejo Banos, D., Kousathanas, A., Orliac, E. J., Ojavee, S. E., Moser, G., … Robinson, M. R. (2021). Probabilistic inference of the genetic architecture underlying functional enrichment of complex traits. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-021-27258-9 chicago: Patxot, Marion, Daniel Trejo Banos, Athanasios Kousathanas, Etienne J Orliac, Sven E Ojavee, Gerhard Moser, Julia Sidorenko, et al. “Probabilistic Inference of the Genetic Architecture Underlying Functional Enrichment of Complex Traits.” Nature Communications. Springer Nature, 2021. https://doi.org/10.1038/s41467-021-27258-9. ieee: M. Patxot et al., “Probabilistic inference of the genetic architecture underlying functional enrichment of complex traits,” Nature Communications, vol. 12, no. 1. Springer Nature, 2021. ista: Patxot M, Trejo Banos D, Kousathanas A, Orliac EJ, Ojavee SE, Moser G, Sidorenko J, Kutalik Z, Magi R, Visscher PM, Ronnegard L, Robinson MR. 2021. Probabilistic inference of the genetic architecture underlying functional enrichment of complex traits. Nature Communications. 12(1), 6972. mla: Patxot, Marion, et al. “Probabilistic Inference of the Genetic Architecture Underlying Functional Enrichment of Complex Traits.” Nature Communications, vol. 12, no. 1, 6972, Springer Nature, 2021, doi:10.1038/s41467-021-27258-9. short: M. Patxot, D. Trejo Banos, A. Kousathanas, E.J. Orliac, S.E. Ojavee, G. Moser, J. Sidorenko, Z. Kutalik, R. Magi, P.M. Visscher, L. Ronnegard, M.R. Robinson, Nature Communications 12 (2021). date_created: 2020-09-17T10:52:38Z date_published: 2021-11-30T00:00:00Z date_updated: 2023-09-26T10:36:14Z day: '30' ddc: - '610' department: - _id: MaRo doi: 10.1038/s41467-021-27258-9 external_id: isi: - '000724450600023' file: - access_level: open_access checksum: 384681be17aff902c149a48f52d13d4f content_type: application/pdf creator: cchlebak date_created: 2021-12-06T07:47:11Z date_updated: 2021-12-06T07:47:11Z file_id: '10419' file_name: 2021_NatComm_Paxtot.pdf file_size: 6519771 relation: main_file success: 1 file_date_updated: 2021-12-06T07:47:11Z has_accepted_license: '1' intvolume: ' 12' isi: 1 issue: '1' language: - iso: eng license: https://creativecommons.org/licenses/by/4.0/ month: '11' oa: 1 oa_version: Published Version publication: Nature Communications publication_identifier: eissn: - 2041-1723 publication_status: published publisher: Springer Nature quality_controlled: '1' related_material: record: - id: '13063' relation: research_data status: public scopus_import: '1' status: public title: Probabilistic inference of the genetic architecture underlying functional enrichment of complex traits tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8 volume: 12 year: '2021' ... --- _id: '10854' abstract: - lang: eng text: "Consider a distributed task where the communication network is fixed but the local inputs given to the nodes of the distributed system may change over time. In this work, we explore the following question: if some of the local inputs change, can an existing solution be updated efficiently, in a dynamic and distributed manner?\r\nTo address this question, we define the batch dynamic CONGEST model in which we are given a bandwidth-limited communication network and a dynamic edge labelling defines the problem input. The task is to maintain a solution to a graph problem on the labelled graph under batch changes. We investigate, when a batch of alpha edge label changes arrive, - how much time as a function of alpha we need to update an existing solution, and - how much information the nodes have to keep in local memory between batches in order to update the solution quickly.\r\nOur work lays the foundations for the theory of input-dynamic distributed network algorithms. We give a general picture of the complexity landscape in this model, design both universal algorithms and algorithms for concrete problems, and present a general framework for lower bounds. The diverse time complexity of our model spans from constant time, through time polynomial in alpha, and to alpha time, which we show to be enough for any task." acknowledgement: We thank Jukka Suomela for discussions. We also thank our shepherd Mohammad Hajiesmaili and the reviewers for their time and suggestions on how to improve the paper. This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 805223 ScaleML), from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska–Curie grant agreement No. 840605, from the Vienna Science and Technology Fund (WWTF) project WHATIF, ICT19-045, 2020-2024, and from the Austrian Science Fund (FWF) and netIDEE SCIENCE project P 33775-N. article_processing_charge: No author: - first_name: Klaus-Tycho full_name: Foerster, Klaus-Tycho last_name: Foerster - first_name: Janne full_name: Korhonen, Janne id: C5402D42-15BC-11E9-A202-CA2BE6697425 last_name: Korhonen - first_name: Ami full_name: Paz, Ami last_name: Paz - first_name: Joel full_name: Rybicki, Joel id: 334EFD2E-F248-11E8-B48F-1D18A9856A87 last_name: Rybicki orcid: 0000-0002-6432-6646 - first_name: Stefan full_name: Schmid, Stefan last_name: Schmid citation: ama: 'Foerster K-T, Korhonen J, Paz A, Rybicki J, Schmid S. Input-dynamic distributed algorithms for communication networks. In: Abstract Proceedings of the 2021 ACM SIGMETRICS / International Conference on Measurement and Modeling of Computer Systems. Association for Computing Machinery; 2021:71-72. doi:10.1145/3410220.3453923' apa: 'Foerster, K.-T., Korhonen, J., Paz, A., Rybicki, J., & Schmid, S. (2021). Input-dynamic distributed algorithms for communication networks. In Abstract Proceedings of the 2021 ACM SIGMETRICS / International Conference on Measurement and Modeling of Computer Systems (pp. 71–72). Virtual, Online: Association for Computing Machinery. https://doi.org/10.1145/3410220.3453923' chicago: Foerster, Klaus-Tycho, Janne Korhonen, Ami Paz, Joel Rybicki, and Stefan Schmid. “Input-Dynamic Distributed Algorithms for Communication Networks.” In Abstract Proceedings of the 2021 ACM SIGMETRICS / International Conference on Measurement and Modeling of Computer Systems, 71–72. Association for Computing Machinery, 2021. https://doi.org/10.1145/3410220.3453923. ieee: K.-T. Foerster, J. Korhonen, A. Paz, J. Rybicki, and S. Schmid, “Input-dynamic distributed algorithms for communication networks,” in Abstract Proceedings of the 2021 ACM SIGMETRICS / International Conference on Measurement and Modeling of Computer Systems, Virtual, Online, 2021, pp. 71–72. ista: 'Foerster K-T, Korhonen J, Paz A, Rybicki J, Schmid S. 2021. Input-dynamic distributed algorithms for communication networks. Abstract Proceedings of the 2021 ACM SIGMETRICS / International Conference on Measurement and Modeling of Computer Systems. SIGMETRICS: International Conference on Measurement and Modeling of Computer Systems, 71–72.' mla: Foerster, Klaus-Tycho, et al. “Input-Dynamic Distributed Algorithms for Communication Networks.” Abstract Proceedings of the 2021 ACM SIGMETRICS / International Conference on Measurement and Modeling of Computer Systems, Association for Computing Machinery, 2021, pp. 71–72, doi:10.1145/3410220.3453923. short: K.-T. Foerster, J. Korhonen, A. Paz, J. Rybicki, S. Schmid, in:, Abstract Proceedings of the 2021 ACM SIGMETRICS / International Conference on Measurement and Modeling of Computer Systems, Association for Computing Machinery, 2021, pp. 71–72. conference: end_date: 2021-06-18 location: Virtual, Online name: 'SIGMETRICS: International Conference on Measurement and Modeling of Computer Systems' start_date: 2021-06-14 date_created: 2022-03-18T08:48:41Z date_published: 2021-05-01T00:00:00Z date_updated: 2023-09-26T10:40:55Z day: '01' department: - _id: DaAl doi: 10.1145/3410220.3453923 ec_funded: 1 external_id: arxiv: - '2005.07637' language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/2005.07637 month: '05' oa: 1 oa_version: Preprint page: 71-72 project: - _id: 268A44D6-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '805223' name: Elastic Coordination for Scalable Machine Learning - _id: 26A5D39A-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '840605' name: Coordination in constrained and natural distributed systems publication: Abstract Proceedings of the 2021 ACM SIGMETRICS / International Conference on Measurement and Modeling of Computer Systems publication_identifier: isbn: - '9781450380720' publication_status: published publisher: Association for Computing Machinery quality_controlled: '1' related_material: record: - id: '10855' relation: extended_version status: public scopus_import: '1' status: public title: Input-dynamic distributed algorithms for communication networks type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2021' ... --- _id: '10855' abstract: - lang: eng text: 'Consider a distributed task where the communication network is fixed but the local inputs given to the nodes of the distributed system may change over time. In this work, we explore the following question: if some of the local inputs change, can an existing solution be updated efficiently, in a dynamic and distributed manner? To address this question, we define the batch dynamic \congest model in which we are given a bandwidth-limited communication network and a dynamic edge labelling defines the problem input. The task is to maintain a solution to a graph problem on the labeled graph under batch changes. We investigate, when a batch of α edge label changes arrive, \beginitemize \item how much time as a function of α we need to update an existing solution, and \item how much information the nodes have to keep in local memory between batches in order to update the solution quickly. \enditemize Our work lays the foundations for the theory of input-dynamic distributed network algorithms. We give a general picture of the complexity landscape in this model, design both universal algorithms and algorithms for concrete problems, and present a general framework for lower bounds. In particular, we derive non-trivial upper bounds for two selected, contrasting problems: maintaining a minimum spanning tree and detecting cliques.' acknowledgement: "We thank Jukka Suomela for discussions. We also thank our shepherd Mohammad Hajiesmaili\r\nand the reviewers for their time and suggestions on how to improve the paper. This project\r\nhas received funding from the European Research Council (ERC) under the European Union’s\r\nHorizon 2020 research and innovation programme (grant agreement No 805223 ScaleML), from the European Union’s Horizon 2020 research and innovation programme under the Marie\r\nSk lodowska–Curie grant agreement No. 840605, from the Vienna Science and Technology Fund (WWTF) project WHATIF, ICT19-045, 2020-2024, and from the Austrian Science Fund (FWF) and netIDEE SCIENCE project P 33775-N." article_processing_charge: No article_type: original author: - first_name: Klaus-Tycho full_name: Foerster, Klaus-Tycho last_name: Foerster - first_name: Janne full_name: Korhonen, Janne id: C5402D42-15BC-11E9-A202-CA2BE6697425 last_name: Korhonen - first_name: Ami full_name: Paz, Ami last_name: Paz - first_name: Joel full_name: Rybicki, Joel id: 334EFD2E-F248-11E8-B48F-1D18A9856A87 last_name: Rybicki orcid: 0000-0002-6432-6646 - first_name: Stefan full_name: Schmid, Stefan last_name: Schmid citation: ama: Foerster K-T, Korhonen J, Paz A, Rybicki J, Schmid S. Input-dynamic distributed algorithms for communication networks. Proceedings of the ACM on Measurement and Analysis of Computing Systems. 2021;5(1):1-33. doi:10.1145/3447384 apa: Foerster, K.-T., Korhonen, J., Paz, A., Rybicki, J., & Schmid, S. (2021). Input-dynamic distributed algorithms for communication networks. Proceedings of the ACM on Measurement and Analysis of Computing Systems. Association for Computing Machinery. https://doi.org/10.1145/3447384 chicago: Foerster, Klaus-Tycho, Janne Korhonen, Ami Paz, Joel Rybicki, and Stefan Schmid. “Input-Dynamic Distributed Algorithms for Communication Networks.” Proceedings of the ACM on Measurement and Analysis of Computing Systems. Association for Computing Machinery, 2021. https://doi.org/10.1145/3447384. ieee: K.-T. Foerster, J. Korhonen, A. Paz, J. Rybicki, and S. Schmid, “Input-dynamic distributed algorithms for communication networks,” Proceedings of the ACM on Measurement and Analysis of Computing Systems, vol. 5, no. 1. Association for Computing Machinery, pp. 1–33, 2021. ista: Foerster K-T, Korhonen J, Paz A, Rybicki J, Schmid S. 2021. Input-dynamic distributed algorithms for communication networks. Proceedings of the ACM on Measurement and Analysis of Computing Systems. 5(1), 1–33. mla: Foerster, Klaus-Tycho, et al. “Input-Dynamic Distributed Algorithms for Communication Networks.” Proceedings of the ACM on Measurement and Analysis of Computing Systems, vol. 5, no. 1, Association for Computing Machinery, 2021, pp. 1–33, doi:10.1145/3447384. short: K.-T. Foerster, J. Korhonen, A. Paz, J. Rybicki, S. Schmid, Proceedings of the ACM on Measurement and Analysis of Computing Systems 5 (2021) 1–33. date_created: 2022-03-18T09:10:27Z date_published: 2021-03-01T00:00:00Z date_updated: 2023-09-26T10:40:55Z day: '01' department: - _id: DaAl doi: 10.1145/3447384 ec_funded: 1 external_id: arxiv: - '2005.07637' intvolume: ' 5' issue: '1' keyword: - Computer Networks and Communications - Hardware and Architecture - Safety - Risk - Reliability and Quality - Computer Science (miscellaneous) language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/2005.07637 month: '03' oa: 1 oa_version: Preprint page: 1-33 project: - _id: 26A5D39A-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '840605' name: Coordination in constrained and natural distributed systems - _id: 268A44D6-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '805223' name: Elastic Coordination for Scalable Machine Learning publication: Proceedings of the ACM on Measurement and Analysis of Computing Systems publication_identifier: issn: - 2476-1249 publication_status: published publisher: Association for Computing Machinery quality_controlled: '1' related_material: record: - id: '10854' relation: shorter_version status: public scopus_import: '1' status: public title: Input-dynamic distributed algorithms for communication networks type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 5 year: '2021' ... --- _id: '9293' abstract: - lang: eng text: 'We consider planning problems for graphs, Markov Decision Processes (MDPs), and games on graphs in an explicit state space. While graphs represent the most basic planning model, MDPs represent interaction with nature and games on graphs represent interaction with an adversarial environment. We consider two planning problems with k different target sets: (a) the coverage problem asks whether there is a plan for each individual target set; and (b) the sequential target reachability problem asks whether the targets can be reached in a given sequence. For the coverage problem, we present a linear-time algorithm for graphs, and quadratic conditional lower bound for MDPs and games on graphs. For the sequential target problem, we present a linear-time algorithm for graphs, a sub-quadratic algorithm for MDPs, and a quadratic conditional lower bound for games on graphs. Our results with conditional lower bounds, based on the boolean matrix multiplication (BMM) conjecture and strong exponential time hypothesis (SETH), establish (i) model-separation results showing that for the coverage problem MDPs and games on graphs are harder than graphs, and for the sequential reachability problem games on graphs are harder than MDPs and graphs; and (ii) problem-separation results showing that for MDPs the coverage problem is harder than the sequential target problem.' article_number: '103499' article_processing_charge: No article_type: original author: - first_name: Krishnendu full_name: Chatterjee, Krishnendu id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87 last_name: Chatterjee orcid: 0000-0002-4561-241X - first_name: Wolfgang full_name: Dvořák, Wolfgang last_name: Dvořák - first_name: Monika H full_name: Henzinger, Monika H id: 540c9bbd-f2de-11ec-812d-d04a5be85630 last_name: Henzinger orcid: 0000-0002-5008-6530 - first_name: Alexander full_name: Svozil, Alexander last_name: Svozil citation: ama: Chatterjee K, Dvořák W, Henzinger MH, Svozil A. Algorithms and conditional lower bounds for planning problems. Artificial Intelligence. 2021;297(8). doi:10.1016/j.artint.2021.103499 apa: Chatterjee, K., Dvořák, W., Henzinger, M. H., & Svozil, A. (2021). Algorithms and conditional lower bounds for planning problems. Artificial Intelligence. Elsevier. https://doi.org/10.1016/j.artint.2021.103499 chicago: Chatterjee, Krishnendu, Wolfgang Dvořák, Monika H Henzinger, and Alexander Svozil. “Algorithms and Conditional Lower Bounds for Planning Problems.” Artificial Intelligence. Elsevier, 2021. https://doi.org/10.1016/j.artint.2021.103499. ieee: K. Chatterjee, W. Dvořák, M. H. Henzinger, and A. Svozil, “Algorithms and conditional lower bounds for planning problems,” Artificial Intelligence, vol. 297, no. 8. Elsevier, 2021. ista: Chatterjee K, Dvořák W, Henzinger MH, Svozil A. 2021. Algorithms and conditional lower bounds for planning problems. Artificial Intelligence. 297(8), 103499. mla: Chatterjee, Krishnendu, et al. “Algorithms and Conditional Lower Bounds for Planning Problems.” Artificial Intelligence, vol. 297, no. 8, 103499, Elsevier, 2021, doi:10.1016/j.artint.2021.103499. short: K. Chatterjee, W. Dvořák, M.H. Henzinger, A. Svozil, Artificial Intelligence 297 (2021). date_created: 2021-03-28T22:01:40Z date_published: 2021-03-16T00:00:00Z date_updated: 2023-09-26T10:41:42Z day: '16' department: - _id: KrCh doi: 10.1016/j.artint.2021.103499 external_id: arxiv: - '1804.07031' isi: - '000657537500003' intvolume: ' 297' isi: 1 issue: '8' language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/1804.07031 month: '03' oa: 1 oa_version: Preprint publication: Artificial Intelligence publication_identifier: issn: - 0004-3702 publication_status: published publisher: Elsevier quality_controlled: '1' related_material: record: - id: '35' relation: earlier_version status: public scopus_import: '1' status: public title: Algorithms and conditional lower bounds for planning problems type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 297 year: '2021' ... --- _id: '13063' abstract: - lang: eng text: We develop a Bayesian model (BayesRR-RC) that provides robust SNP-heritability estimation, an alternative to marker discovery, and accurate genomic prediction, taking 22 seconds per iteration to estimate 8.4 million SNP-effects and 78 SNP-heritability parameters in the UK Biobank. We find that only $\leq$ 10\% of the genetic variation captured for height, body mass index, cardiovascular disease, and type 2 diabetes is attributable to proximal regulatory regions within 10kb upstream of genes, while 12-25% is attributed to coding regions, 32-44% to introns, and 22-28% to distal 10-500kb upstream regions. Up to 24% of all cis and coding regions of each chromosome are associated with each trait, with over 3,100 independent exonic and intronic regions and over 5,400 independent regulatory regions having >95% probability of contributing >0.001% to the genetic variance of these four traits. Our open-source software (GMRM) provides a scalable alternative to current approaches for biobank data. article_processing_charge: No author: - first_name: Matthew Richard full_name: Robinson, Matthew Richard id: E5D42276-F5DA-11E9-8E24-6303E6697425 last_name: Robinson orcid: 0000-0001-8982-8813 citation: ama: Robinson MR. Probabilistic inference of the genetic architecture of functional enrichment of complex traits. 2021. doi:10.5061/dryad.sqv9s4n51 apa: Robinson, M. R. (2021). Probabilistic inference of the genetic architecture of functional enrichment of complex traits. Dryad. https://doi.org/10.5061/dryad.sqv9s4n51 chicago: Robinson, Matthew Richard. “Probabilistic Inference of the Genetic Architecture of Functional Enrichment of Complex Traits.” Dryad, 2021. https://doi.org/10.5061/dryad.sqv9s4n51. ieee: M. R. Robinson, “Probabilistic inference of the genetic architecture of functional enrichment of complex traits.” Dryad, 2021. ista: Robinson MR. 2021. Probabilistic inference of the genetic architecture of functional enrichment of complex traits, Dryad, 10.5061/dryad.sqv9s4n51. mla: Robinson, Matthew Richard. Probabilistic Inference of the Genetic Architecture of Functional Enrichment of Complex Traits. Dryad, 2021, doi:10.5061/dryad.sqv9s4n51. short: M.R. Robinson, (2021). date_created: 2023-05-23T16:20:16Z date_published: 2021-11-04T00:00:00Z date_updated: 2023-09-26T10:36:15Z day: '04' ddc: - '570' department: - _id: MaRo doi: 10.5061/dryad.sqv9s4n51 license: https://creativecommons.org/publicdomain/zero/1.0/ main_file_link: - open_access: '1' url: https://doi.org/10.5061/dryad.sqv9s4n51 month: '11' oa: 1 oa_version: Published Version publisher: Dryad related_material: link: - relation: software url: https://github.com/medical-genomics-group/gmrm record: - id: '8429' relation: used_in_publication status: public status: public title: Probabilistic inference of the genetic architecture of functional enrichment of complex traits tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data_reference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2021' ... --- _id: '9304' abstract: - lang: eng text: The high processing cost, poor mechanical properties and moderate performance of Bi2Te3–based alloys used in thermoelectric devices limit the cost-effectiveness of this energy conversion technology. Towards solving these current challenges, in the present work, we detail a low temperature solution-based approach to produce Bi2Te3-Cu2-xTe nanocomposites with improved thermoelectric performance. Our approach consists in combining proper ratios of colloidal nanoparticles and to consolidate the resulting mixture into nanocomposites using a hot press. The transport properties of the nanocomposites are characterized and compared with those of pure Bi2Te3 nanomaterials obtained following the same procedure. In contrast with most previous works, the presence of Cu2-xTe nanodomains does not result in a significant reduction of the lattice thermal conductivity of the reference Bi2Te3 nanomaterial, which is already very low. However, the introduction of Cu2-xTe yields a nearly threefold increase of the power factor associated to a simultaneous increase of the Seebeck coefficient and electrical conductivity at temperatures above 400 K. Taking into account the band alignment of the two materials, we rationalize this increase by considering that Cu2-xTe nanostructures, with a relatively low electron affinity, are able to inject electrons into Bi2Te3, enhancing in this way its electrical conductivity. The simultaneous increase of the Seebeck coefficient is related to the energy filtering of charge carriers at energy barriers within Bi2Te3 domains associated with the accumulation of electrons in regions nearby a Cu2-xTe/Bi2Te3 heterojunction. Overall, with the incorporation of a proper amount of Cu2-xTe nanoparticles, we demonstrate a 250% improvement of the thermoelectric figure of merit of Bi2Te3. acknowledgement: "This work was supported by the European Regional Development Funds and by the Generalitat de Catalunya through the project 2017SGR1246. Y.Z, C.X, M.L, K.X and X.H thank the China Scholarship Council for the scholarship support. MI acknowledges financial support from IST Austria. YL acknowledges funding from the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No. 754411. ICN2\r\nacknowledges funding from Generalitat de Catalunya 2017 SGR 327 and the Spanish MINECO project ENE2017-85087-C3. ICN2 is supported by the Severo Ochoa program from the Spanish MINECO (grant no. SEV-2017-0706) and is funded by the CERCA Program/Generalitat de Catalunya. Part of the present work has been performed in the framework of Universitat Autònoma de Barcelona Materials Science PhD program." article_number: '129374' article_processing_charge: No article_type: original author: - first_name: Yu full_name: Zhang, Yu last_name: Zhang - first_name: Congcong full_name: Xing, Congcong last_name: Xing - first_name: Yu full_name: Liu, Yu id: 2A70014E-F248-11E8-B48F-1D18A9856A87 last_name: Liu orcid: 0000-0001-7313-6740 - first_name: Mengyao full_name: Li, Mengyao last_name: Li - first_name: Ke full_name: Xiao, Ke last_name: Xiao - first_name: Pablo full_name: Guardia, Pablo last_name: Guardia - first_name: Seungho full_name: Lee, Seungho id: BB243B88-D767-11E9-B658-BC13E6697425 last_name: Lee orcid: 0000-0002-6962-8598 - first_name: Xu full_name: Han, Xu last_name: Han - first_name: Ahmad full_name: Moghaddam, Ahmad last_name: Moghaddam - first_name: Joan J full_name: Roa, Joan J last_name: Roa - first_name: Jordi full_name: Arbiol, Jordi last_name: Arbiol - first_name: Maria full_name: Ibáñez, Maria id: 43C61214-F248-11E8-B48F-1D18A9856A87 last_name: Ibáñez orcid: 0000-0001-5013-2843 - first_name: Kai full_name: Pan, Kai last_name: Pan - first_name: Mirko full_name: Prato, Mirko last_name: Prato - first_name: Ying full_name: Xie, Ying last_name: Xie - first_name: Andreu full_name: Cabot, Andreu last_name: Cabot citation: ama: Zhang Y, Xing C, Liu Y, et al. Influence of copper telluride nanodomains on the transport properties of n-type bismuth telluride. Chemical Engineering Journal. 2021;418(8). doi:10.1016/j.cej.2021.129374 apa: Zhang, Y., Xing, C., Liu, Y., Li, M., Xiao, K., Guardia, P., … Cabot, A. (2021). Influence of copper telluride nanodomains on the transport properties of n-type bismuth telluride. Chemical Engineering Journal. Elsevier. https://doi.org/10.1016/j.cej.2021.129374 chicago: Zhang, Yu, Congcong Xing, Yu Liu, Mengyao Li, Ke Xiao, Pablo Guardia, Seungho Lee, et al. “Influence of Copper Telluride Nanodomains on the Transport Properties of N-Type Bismuth Telluride.” Chemical Engineering Journal. Elsevier, 2021. https://doi.org/10.1016/j.cej.2021.129374. ieee: Y. Zhang et al., “Influence of copper telluride nanodomains on the transport properties of n-type bismuth telluride,” Chemical Engineering Journal, vol. 418, no. 8. Elsevier, 2021. ista: Zhang Y, Xing C, Liu Y, Li M, Xiao K, Guardia P, Lee S, Han X, Moghaddam A, Roa JJ, Arbiol J, Ibáñez M, Pan K, Prato M, Xie Y, Cabot A. 2021. Influence of copper telluride nanodomains on the transport properties of n-type bismuth telluride. Chemical Engineering Journal. 418(8), 129374. mla: Zhang, Yu, et al. “Influence of Copper Telluride Nanodomains on the Transport Properties of N-Type Bismuth Telluride.” Chemical Engineering Journal, vol. 418, no. 8, 129374, Elsevier, 2021, doi:10.1016/j.cej.2021.129374. short: Y. Zhang, C. Xing, Y. Liu, M. Li, K. Xiao, P. Guardia, S. Lee, X. Han, A. Moghaddam, J.J. Roa, J. Arbiol, M. Ibáñez, K. Pan, M. Prato, Y. Xie, A. Cabot, Chemical Engineering Journal 418 (2021). date_created: 2021-04-04T22:01:20Z date_published: 2021-08-15T00:00:00Z date_updated: 2023-09-27T07:36:29Z day: '15' department: - _id: MaIb doi: 10.1016/j.cej.2021.129374 ec_funded: 1 external_id: isi: - '000655672000005' intvolume: ' 418' isi: 1 issue: '8' language: - iso: eng main_file_link: - open_access: '1' url: https://ddd.uab.cat/record/271949 month: '08' oa: 1 oa_version: Submitted Version project: - _id: 260C2330-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '754411' name: ISTplus - Postdoctoral Fellowships publication: Chemical Engineering Journal publication_identifier: issn: - 1385-8947 publication_status: published publisher: Elsevier quality_controlled: '1' scopus_import: '1' status: public title: Influence of copper telluride nanodomains on the transport properties of n-type bismuth telluride type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 418 year: '2021' ... --- _id: '9793' abstract: - lang: eng text: Astrocytes extensively infiltrate the neuropil to regulate critical aspects of synaptic development and function. This process is regulated by transcellular interactions between astrocytes and neurons via cell adhesion molecules. How astrocytes coordinate developmental processes among one another to parse out the synaptic neuropil and form non-overlapping territories is unknown. Here we identify a molecular mechanism regulating astrocyte-astrocyte interactions during development to coordinate astrocyte morphogenesis and gap junction coupling. We show that hepaCAM, a disease-linked, astrocyte-enriched cell adhesion molecule, regulates astrocyte competition for territory and morphological complexity in the developing mouse cortex. Furthermore, conditional deletion of Hepacam from developing astrocytes significantly impairs gap junction coupling between astrocytes and disrupts the balance between synaptic excitation and inhibition. Mutations in HEPACAM cause megalencephalic leukoencephalopathy with subcortical cysts in humans. Therefore, our findings suggest that disruption of astrocyte self-organization mechanisms could be an underlying cause of neural pathology. acknowledgement: This work was supported by the National Institutes of Health (R01 DA047258 and R01 NS102237 to C.E., F32 NS100392 to K.T.B.) and the Holland-Trice Brain Research Award (to C.E.). K.T.B. was supported by postdoctoral fellowships from the Foerster-Bernstein Family and The Hartwell Foundation. The Hippenmeyer lab was supported by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovations program (725780 LinPro) to S.H. R.E. was supported by Ministerio de Ciencia y Tecnología (RTI2018-093493-B-I00). We thank the Duke Light Microscopy Core Facility, the Duke Transgenic Mouse Facility, Dr. U. Schulte for assistance with proteomic experiments, and Dr. D. Silver for critical review of the manuscript. Cartoon elements of figure panels were created using BioRender.com. article_processing_charge: No article_type: original author: - first_name: Katherine T. full_name: Baldwin, Katherine T. last_name: Baldwin - first_name: Christabel X. full_name: Tan, Christabel X. last_name: Tan - first_name: Samuel T. full_name: Strader, Samuel T. last_name: Strader - first_name: Changyu full_name: Jiang, Changyu last_name: Jiang - first_name: Justin T. full_name: Savage, Justin T. last_name: Savage - first_name: Xabier full_name: Elorza-Vidal, Xabier last_name: Elorza-Vidal - first_name: Ximena full_name: Contreras, Ximena id: 475990FE-F248-11E8-B48F-1D18A9856A87 last_name: Contreras - first_name: Thomas full_name: Rülicke, Thomas last_name: Rülicke - first_name: Simon full_name: Hippenmeyer, Simon id: 37B36620-F248-11E8-B48F-1D18A9856A87 last_name: Hippenmeyer orcid: 0000-0003-2279-1061 - first_name: Raúl full_name: Estévez, Raúl last_name: Estévez - first_name: Ru-Rong full_name: Ji, Ru-Rong last_name: Ji - first_name: Cagla full_name: Eroglu, Cagla last_name: Eroglu citation: ama: Baldwin KT, Tan CX, Strader ST, et al. HepaCAM controls astrocyte self-organization and coupling. Neuron. 2021;109(15):2427-2442.e10. doi:10.1016/j.neuron.2021.05.025 apa: Baldwin, K. T., Tan, C. X., Strader, S. T., Jiang, C., Savage, J. T., Elorza-Vidal, X., … Eroglu, C. (2021). HepaCAM controls astrocyte self-organization and coupling. Neuron. Elsevier. https://doi.org/10.1016/j.neuron.2021.05.025 chicago: Baldwin, Katherine T., Christabel X. Tan, Samuel T. Strader, Changyu Jiang, Justin T. Savage, Xabier Elorza-Vidal, Ximena Contreras, et al. “HepaCAM Controls Astrocyte Self-Organization and Coupling.” Neuron. Elsevier, 2021. https://doi.org/10.1016/j.neuron.2021.05.025. ieee: K. T. Baldwin et al., “HepaCAM controls astrocyte self-organization and coupling,” Neuron, vol. 109, no. 15. Elsevier, p. 2427–2442.e10, 2021. ista: Baldwin KT, Tan CX, Strader ST, Jiang C, Savage JT, Elorza-Vidal X, Contreras X, Rülicke T, Hippenmeyer S, Estévez R, Ji R-R, Eroglu C. 2021. HepaCAM controls astrocyte self-organization and coupling. Neuron. 109(15), 2427–2442.e10. mla: Baldwin, Katherine T., et al. “HepaCAM Controls Astrocyte Self-Organization and Coupling.” Neuron, vol. 109, no. 15, Elsevier, 2021, p. 2427–2442.e10, doi:10.1016/j.neuron.2021.05.025. short: K.T. Baldwin, C.X. Tan, S.T. Strader, C. Jiang, J.T. Savage, X. Elorza-Vidal, X. Contreras, T. Rülicke, S. Hippenmeyer, R. Estévez, R.-R. Ji, C. Eroglu, Neuron 109 (2021) 2427–2442.e10. date_created: 2021-08-06T09:08:25Z date_published: 2021-08-04T00:00:00Z date_updated: 2023-09-27T07:46:09Z day: '04' department: - _id: SiHi doi: 10.1016/j.neuron.2021.05.025 ec_funded: 1 external_id: isi: - '000692851900010' pmid: - '34171291' intvolume: ' 109' isi: 1 issue: '15' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1016/j.neuron.2021.05.025 month: '08' oa: 1 oa_version: Published Version page: 2427-2442.e10 pmid: 1 project: - _id: 260018B0-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '725780' name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development publication: Neuron publication_identifier: eissn: - 1097-4199 issn: - 0896-6273 publication_status: published publisher: Elsevier quality_controlled: '1' scopus_import: '1' status: public title: HepaCAM controls astrocyte self-organization and coupling type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 109 year: '2021' ... --- _id: '9305' abstract: - lang: eng text: Copper chalcogenides are outstanding thermoelectric materials for applications in the medium-high temperature range. Among different chalcogenides, while Cu2−xSe is characterized by higher thermoelectric figures of merit, Cu2−xS provides advantages in terms of low cost and element abundance. In the present work, we investigate the effect of different dopants to enhance the Cu2−xS performance and also its thermal stability. Among the tested options, Pb-doped Cu2−xS shows the highest improvement in stability against sulfur volatilization. Additionally, Pb incorporation allows tuning charge carrier concentration, which enables a significant improvement of the power factor. We demonstrate here that the introduction of an optimal additive amount of just 0.3% results in a threefold increase of the power factor in the middle-temperature range (500–800 K) and a record dimensionless thermoelectric figure of merit above 2 at 880 K. acknowledgement: This work was supported by the European Regional Development Fund and by the Spanish Ministerio de Economía y Competitividad through the project SEHTOP (ENE2016-77798-C4-3-R). MI acknowledges financial support from IST Austria. YL acknowledges funding from the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No. 754411. YZ, CX, XW, KX and TZ thank the China Scholarship Council for the scholarship support. ICN2 acknowledges funding from Generalitat de Catalunya 2017 SGR 327 and the Spanish MINECO project ENE2017-85087-C3. ICN2 is supported by the Severo Ochoa program from the Spanish MINECO (grant no. SEV-2017-0706) and is funded by the CERCA program/Generalitat de Catalunya. Part of the present work has been performed in the framework of Universitat Autònoma de Barcelona Materials Science Ph.D. program. M.C.S. has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 754510 (PROBIST) and the Severo Ochoa programme. P.G. acknowledges financial support from the Spanish government (MICIU) through the RTI2018-102006-J-I00 project and the Catalan Agency of Competitiveness (ACCIO) through the TecnioSpring+ Marie Sklodowska-Curie action TECSPR16-1-0082. YZ and CX contributed equally to this work. article_number: '105991' article_processing_charge: No article_type: original author: - first_name: Yu full_name: Zhang, Yu last_name: Zhang - first_name: Congcong full_name: Xing, Congcong last_name: Xing - first_name: Yu full_name: Liu, Yu id: 2A70014E-F248-11E8-B48F-1D18A9856A87 last_name: Liu orcid: 0000-0001-7313-6740 - first_name: Maria Chiara full_name: Spadaro, Maria Chiara last_name: Spadaro - first_name: Xiang full_name: Wang, Xiang last_name: Wang - first_name: Mengyao full_name: Li, Mengyao last_name: Li - first_name: Ke full_name: Xiao, Ke last_name: Xiao - first_name: Ting full_name: Zhang, Ting last_name: Zhang - first_name: Pablo full_name: Guardia, Pablo last_name: Guardia - first_name: Khak Ho full_name: Lim, Khak Ho last_name: Lim - first_name: Ahmad Ostovari full_name: Moghaddam, Ahmad Ostovari last_name: Moghaddam - first_name: Jordi full_name: Llorca, Jordi last_name: Llorca - first_name: Jordi full_name: Arbiol, Jordi last_name: Arbiol - first_name: Maria full_name: Ibáñez, Maria id: 43C61214-F248-11E8-B48F-1D18A9856A87 last_name: Ibáñez orcid: 0000-0001-5013-2843 - first_name: Andreu full_name: Cabot, Andreu last_name: Cabot citation: ama: Zhang Y, Xing C, Liu Y, et al. Doping-mediated stabilization of copper vacancies to promote thermoelectric properties of Cu2-xS. Nano Energy. 2021;85(7). doi:10.1016/j.nanoen.2021.105991 apa: Zhang, Y., Xing, C., Liu, Y., Spadaro, M. C., Wang, X., Li, M., … Cabot, A. (2021). Doping-mediated stabilization of copper vacancies to promote thermoelectric properties of Cu2-xS. Nano Energy. Elsevier. https://doi.org/10.1016/j.nanoen.2021.105991 chicago: Zhang, Yu, Congcong Xing, Yu Liu, Maria Chiara Spadaro, Xiang Wang, Mengyao Li, Ke Xiao, et al. “Doping-Mediated Stabilization of Copper Vacancies to Promote Thermoelectric Properties of Cu2-XS.” Nano Energy. Elsevier, 2021. https://doi.org/10.1016/j.nanoen.2021.105991. ieee: Y. Zhang et al., “Doping-mediated stabilization of copper vacancies to promote thermoelectric properties of Cu2-xS,” Nano Energy, vol. 85, no. 7. Elsevier, 2021. ista: Zhang Y, Xing C, Liu Y, Spadaro MC, Wang X, Li M, Xiao K, Zhang T, Guardia P, Lim KH, Moghaddam AO, Llorca J, Arbiol J, Ibáñez M, Cabot A. 2021. Doping-mediated stabilization of copper vacancies to promote thermoelectric properties of Cu2-xS. Nano Energy. 85(7), 105991. mla: Zhang, Yu, et al. “Doping-Mediated Stabilization of Copper Vacancies to Promote Thermoelectric Properties of Cu2-XS.” Nano Energy, vol. 85, no. 7, 105991, Elsevier, 2021, doi:10.1016/j.nanoen.2021.105991. short: Y. Zhang, C. Xing, Y. Liu, M.C. Spadaro, X. Wang, M. Li, K. Xiao, T. Zhang, P. Guardia, K.H. Lim, A.O. Moghaddam, J. Llorca, J. Arbiol, M. Ibáñez, A. Cabot, Nano Energy 85 (2021). date_created: 2021-04-04T22:01:21Z date_published: 2021-07-01T00:00:00Z date_updated: 2023-09-27T07:41:00Z day: '01' department: - _id: MaIb doi: 10.1016/j.nanoen.2021.105991 ec_funded: 1 external_id: isi: - '000663442200004' intvolume: ' 85' isi: 1 issue: '7' language: - iso: eng main_file_link: - open_access: '1' url: https://ddd.uab.cat/record/271947 month: '07' oa: 1 oa_version: Submitted Version project: - _id: 260C2330-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '754411' name: ISTplus - Postdoctoral Fellowships publication: Nano Energy publication_identifier: issn: - 2211-2855 publication_status: published publisher: Elsevier quality_controlled: '1' scopus_import: '1' status: public title: Doping-mediated stabilization of copper vacancies to promote thermoelectric properties of Cu2-xS type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 85 year: '2021' ... --- _id: '9212' abstract: - lang: eng text: Plant fitness is largely dependent on the root, the underground organ, which, besides its anchoring function, supplies the plant body with water and all nutrients necessary for growth and development. To exploit the soil effectively, roots must constantly integrate environmental signals and react through adjustment of growth and development. Important components of the root management strategy involve a rapid modulation of the root growth kinetics and growth direction, as well as an increase of the root system radius through formation of lateral roots (LRs). At the molecular level, such a fascinating growth and developmental flexibility of root organ requires regulatory networks that guarantee stability of the developmental program but also allows integration of various environmental inputs. The plant hormone auxin is one of the principal endogenous regulators of root system architecture by controlling primary root growth and formation of LR. In this review, we discuss recent progress in understanding molecular networks where auxin is one of the main players shaping the root system and acting as mediator between endogenous cues and environmental factors. acknowledgement: We apologize to all the authors whose scientific work could not be cited and discussed because of space restrictions. We thank Dr. Inge Verstraeten (ISTAustria) and Dr. Juan Carlos Montesinos-Lopez (ETH Zürich) for helpful suggestions. This work was supported by the DOC Fellowship Programme of the Austrian Academy of Sciences (25008) to C.A. article_number: a039941 article_processing_charge: No article_type: original author: - first_name: Nicola full_name: Cavallari, Nicola id: 457160E6-F248-11E8-B48F-1D18A9856A87 last_name: Cavallari - first_name: Christina full_name: Artner, Christina id: 45DF286A-F248-11E8-B48F-1D18A9856A87 last_name: Artner - first_name: Eva full_name: Benková, Eva id: 38F4F166-F248-11E8-B48F-1D18A9856A87 last_name: Benková orcid: 0000-0002-8510-9739 citation: ama: Cavallari N, Artner C, Benková E. Auxin-regulated lateral root organogenesis. Cold Spring Harbor Perspectives in Biology. 2021;13(7). doi:10.1101/cshperspect.a039941 apa: Cavallari, N., Artner, C., & Benková, E. (2021). Auxin-regulated lateral root organogenesis. Cold Spring Harbor Perspectives in Biology. Cold Spring Harbor Laboratory Press. https://doi.org/10.1101/cshperspect.a039941 chicago: Cavallari, Nicola, Christina Artner, and Eva Benková. “Auxin-Regulated Lateral Root Organogenesis.” Cold Spring Harbor Perspectives in Biology. Cold Spring Harbor Laboratory Press, 2021. https://doi.org/10.1101/cshperspect.a039941. ieee: N. Cavallari, C. Artner, and E. Benková, “Auxin-regulated lateral root organogenesis,” Cold Spring Harbor Perspectives in Biology, vol. 13, no. 7. Cold Spring Harbor Laboratory Press, 2021. ista: Cavallari N, Artner C, Benková E. 2021. Auxin-regulated lateral root organogenesis. Cold Spring Harbor Perspectives in Biology. 13(7), a039941. mla: Cavallari, Nicola, et al. “Auxin-Regulated Lateral Root Organogenesis.” Cold Spring Harbor Perspectives in Biology, vol. 13, no. 7, a039941, Cold Spring Harbor Laboratory Press, 2021, doi:10.1101/cshperspect.a039941. short: N. Cavallari, C. Artner, E. Benková, Cold Spring Harbor Perspectives in Biology 13 (2021). date_created: 2021-03-01T10:08:32Z date_published: 2021-07-01T00:00:00Z date_updated: 2023-09-27T06:44:06Z day: '01' department: - _id: EvBe doi: 10.1101/cshperspect.a039941 external_id: isi: - '000692069100001' pmid: - '33558367' intvolume: ' 13' isi: 1 issue: '7' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1101/cshperspect.a039941 month: '07' oa: 1 oa_version: Published Version pmid: 1 project: - _id: 2685A872-B435-11E9-9278-68D0E5697425 name: Hormonal regulation of plant adaptive responses to environmental signals publication: Cold Spring Harbor Perspectives in Biology publication_identifier: issn: - 1943-0264 publication_status: published publisher: Cold Spring Harbor Laboratory Press quality_controlled: '1' scopus_import: '1' status: public title: Auxin-regulated lateral root organogenesis type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 13 year: '2021' ... --- _id: '9953' abstract: - lang: eng text: Chronic psychological stress is one of the most important triggers and environmental risk factors for neuropsychiatric disorders. Chronic stress can influence all organs via the secretion of stress hormones, including glucocorticoids by the adrenal glands, which coordinate the stress response across the body. In the brain, glucocorticoid receptors (GR) are expressed by various cell types including microglia, which are its resident immune cells regulating stress-induced inflammatory processes. To study the roles of microglial GR under normal homeostatic conditions and following chronic stress, we generated a mouse model in which the GR gene is depleted in microglia specifically at adulthood to prevent developmental confounds. We first confirmed that microglia were depleted in GR in our model in males and females among the cingulate cortex and the hippocampus, both stress-sensitive brain regions. Then, cohorts of microglial-GR depleted and wild-type (WT) adult female mice were housed for 3 weeks in a standard or stressful condition, using a chronic unpredictable mild stress (CUMS) paradigm. CUMS induced stress-related behavior in both microglial-GR depleted and WT animals as demonstrated by a decrease of both saccharine preference and progressive ratio breakpoint. Nevertheless, the hippocampal microglial and neural mechanisms underlying the adaptation to stress occurred differently between the two genotypes. Upon CUMS exposure, microglial morphology was altered in the WT controls, without any apparent effect in microglial-GR depleted mice. Furthermore, in the standard environment condition, GR depleted-microglia showed increased expression of pro-inflammatory genes, and genes involved in microglial homeostatic functions (such as Trem2, Cx3cr1 and Mertk). On the contrary, in CUMS condition, GR depleted-microglia showed reduced expression levels of pro-inflammatory genes and increased neuroprotective as well as anti-inflammatory genes compared to WT-microglia. Moreover, in microglial-GR depleted mice, but not in WT mice, CUMS led to a significant reduction of CA1 long-term potentiation and paired-pulse ratio. Lastly, differences in adult hippocampal neurogenesis were observed between the genotypes during normal homeostatic conditions, with microglial-GR deficiency increasing the formation of newborn neurons in the dentate gyrus subgranular zone independently from stress exposure. Together, these findings indicate that, although the deletion of microglial GR did not prevent the animal’s ability to respond to stress, it contributed to modulating hippocampal functions in both standard and stressful conditions, notably by shaping the microglial response to chronic stress. acknowledgement: We acknowledge that Université Laval stands on the traditional and unceded land of the Huron-Wendat peoples; and that the University of Victoria exists on the territory of the Lekwungen peoples and that the Songhees, Esquimalt and WSÁNEÆ peoples have relationships to this land. We thank Emmanuel Planel for the access to the epifluorescence microscope and Julie-Christine Lévesque at the Bioimaging Platform of CRCHU de Québec-Université Laval for technical assistance. We also thank the Centre for Advanced Materials and Related Technology for the access to the confocal microscope with Airyscan. K.P. was supported by a doctoral scholarship from Fonds de Recherche du Québec – Santé (FRQS), an excellence award from Fondation du CHU de Québec, as well as from Centre Thématique de Recherche en Neurosciences and from Fondation Famille-Choquette. K.B. was supported by excellence scholarships from Université Laval and Fondation du CHU de Québec. S.G. is supported by FIRC-AIRC fellowship for Italy 22329/2018 and by Pilot ARISLA NKINALS 2019. C.W.H. and J.C.S. were supported by postdoctoral fellowships from FRQS. This study was funded by a Natural Sciences and Engineering Research Council of Canada (NSERC) Discovery grant (RGPIN-2014-05308) awarded to M.E.T., by ERANET neuron 2017 MicroSynDep to M.E.T. and I.B., and by the Italian Ministry of Health, grant RF-2018-12367249 to I.B, by PRIN 2017, AIRC 2019 and Ministero della Salute RF2018 to C.L. M.E.T. is a Tier II Canada Research Chair in Neurobiology of Aging and Cognition. article_processing_charge: No article_type: original author: - first_name: Katherine full_name: Picard, Katherine last_name: Picard - first_name: Kanchan full_name: Bisht, Kanchan last_name: Bisht - first_name: Silvia full_name: Poggini, Silvia last_name: Poggini - first_name: Stefano full_name: Garofalo, Stefano last_name: Garofalo - first_name: Maria Teresa full_name: Golia, Maria Teresa last_name: Golia - first_name: Bernadette full_name: Basilico, Bernadette id: 36035796-5ACA-11E9-A75E-7AF2E5697425 last_name: Basilico orcid: 0000-0003-1843-3173 - first_name: Fatima full_name: Abdallah, Fatima last_name: Abdallah - first_name: Naomi full_name: Ciano Albanese, Naomi last_name: Ciano Albanese - first_name: Irmgard full_name: Amrein, Irmgard last_name: Amrein - first_name: Nathalie full_name: Vernoux, Nathalie last_name: Vernoux - first_name: Kaushik full_name: Sharma, Kaushik last_name: Sharma - first_name: Chin Wai full_name: Hui, Chin Wai last_name: Hui - first_name: Julie full_name: C. Savage, Julie last_name: C. Savage - first_name: Cristina full_name: Limatola, Cristina last_name: Limatola - first_name: Davide full_name: Ragozzino, Davide last_name: Ragozzino - first_name: Laura full_name: Maggi, Laura last_name: Maggi - first_name: Igor full_name: Branchi, Igor last_name: Branchi - first_name: Marie Ève full_name: Tremblay, Marie Ève last_name: Tremblay citation: ama: Picard K, Bisht K, Poggini S, et al. Microglial-glucocorticoid receptor depletion alters the response of hippocampal microglia and neurons in a chronic unpredictable mild stress paradigm in female mice. Brain, Behavior, and Immunity. 2021;97:423-439. doi:10.1016/j.bbi.2021.07.022 apa: Picard, K., Bisht, K., Poggini, S., Garofalo, S., Golia, M. T., Basilico, B., … Tremblay, M. È. (2021). Microglial-glucocorticoid receptor depletion alters the response of hippocampal microglia and neurons in a chronic unpredictable mild stress paradigm in female mice. Brain, Behavior, and Immunity. Elsevier. https://doi.org/10.1016/j.bbi.2021.07.022 chicago: Picard, Katherine, Kanchan Bisht, Silvia Poggini, Stefano Garofalo, Maria Teresa Golia, Bernadette Basilico, Fatima Abdallah, et al. “Microglial-Glucocorticoid Receptor Depletion Alters the Response of Hippocampal Microglia and Neurons in a Chronic Unpredictable Mild Stress Paradigm in Female Mice.” Brain, Behavior, and Immunity. Elsevier, 2021. https://doi.org/10.1016/j.bbi.2021.07.022. ieee: K. Picard et al., “Microglial-glucocorticoid receptor depletion alters the response of hippocampal microglia and neurons in a chronic unpredictable mild stress paradigm in female mice,” Brain, Behavior, and Immunity, vol. 97. Elsevier, pp. 423–439, 2021. ista: Picard K, Bisht K, Poggini S, Garofalo S, Golia MT, Basilico B, Abdallah F, Ciano Albanese N, Amrein I, Vernoux N, Sharma K, Hui CW, C. Savage J, Limatola C, Ragozzino D, Maggi L, Branchi I, Tremblay MÈ. 2021. Microglial-glucocorticoid receptor depletion alters the response of hippocampal microglia and neurons in a chronic unpredictable mild stress paradigm in female mice. Brain, Behavior, and Immunity. 97, 423–439. mla: Picard, Katherine, et al. “Microglial-Glucocorticoid Receptor Depletion Alters the Response of Hippocampal Microglia and Neurons in a Chronic Unpredictable Mild Stress Paradigm in Female Mice.” Brain, Behavior, and Immunity, vol. 97, Elsevier, 2021, pp. 423–39, doi:10.1016/j.bbi.2021.07.022. short: K. Picard, K. Bisht, S. Poggini, S. Garofalo, M.T. Golia, B. Basilico, F. Abdallah, N. Ciano Albanese, I. Amrein, N. Vernoux, K. Sharma, C.W. Hui, J. C. Savage, C. Limatola, D. Ragozzino, L. Maggi, I. Branchi, M.È. Tremblay, Brain, Behavior, and Immunity 97 (2021) 423–439. date_created: 2021-08-22T22:01:21Z date_published: 2021-10-01T00:00:00Z date_updated: 2023-10-03T09:49:18Z day: '01' department: - _id: GaNo doi: 10.1016/j.bbi.2021.07.022 external_id: isi: - '000702878400007' pmid: - '34343616' intvolume: ' 97' isi: 1 language: - iso: eng main_file_link: - open_access: '1' url: https://www.zora.uzh.ch/id/eprint/208855/1/ZORA208855.pdf month: '10' oa: 1 oa_version: Submitted Version page: 423-439 pmid: 1 publication: Brain, Behavior, and Immunity publication_identifier: issn: - 0889-1591 publication_status: published publisher: Elsevier quality_controlled: '1' scopus_import: '1' status: public title: Microglial-glucocorticoid receptor depletion alters the response of hippocampal microglia and neurons in a chronic unpredictable mild stress paradigm in female mice type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 97 year: '2021' ... --- _id: '10327' abstract: - lang: eng text: Composite materials offer numerous advantages in a wide range of applications, including thermoelectrics. Here, semiconductor–metal composites are produced by just blending nanoparticles of a sulfide semiconductor obtained in aqueous solution and at room temperature with a metallic Cu powder. The obtained blend is annealed in a reducing atmosphere and afterward consolidated into dense polycrystalline pellets through spark plasma sintering (SPS). We observe that, during the annealing process, the presence of metallic copper activates a partial reduction of the PbS, resulting in the formation of PbS–Pb–CuxS composites. The presence of metallic lead during the SPS process habilitates the liquid-phase sintering of the composite. Besides, by comparing the transport properties of PbS, the PbS–Pb–CuxS composites, and PbS–CuxS composites obtained by blending PbS and CuxS nanoparticles, we demonstrate that the presence of metallic lead decisively contributes to a strong increase of the charge carrier concentration through spillover of charge carriers enabled by the low work function of lead. The increase in charge carrier concentration translates into much higher electrical conductivities and moderately lower Seebeck coefficients. These properties translate into power factors up to 2.1 mW m–1 K–2 at ambient temperature, well above those of PbS and PbS + CuxS. Additionally, the presence of multiple phases in the final composite results in a notable decrease in the lattice thermal conductivity. Overall, the introduction of metallic copper in the initial blend results in a significant improvement of the thermoelectric performance of PbS, reaching a dimensionless thermoelectric figure of merit ZT = 1.1 at 750 K, which represents about a 400% increase over bare PbS. Besides, an average ZTave = 0.72 in the temperature range 320–773 K is demonstrated. acknowledgement: This work was supported by the European Regional Development Funds. M.L., Y.Z., X.H., and K.X. thank the China Scholarship Council for scholarship support. M. I. has been financially supported by IST Austria and the Werner Siemens Foundation. Y.L. acknowledges funding from the European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No. 754411. J.L. is a Serra Húnter fellow and is grateful to ICREA Academia program and projects MICINN/FEDER RTI2018-093996-B-C31 and GC 2017 SGR 128. ICN2 acknowledges funding from Generalitat de Catalunya 2017 SGR 327 and the Spanish MINECO project NANOGEN (PID2020-116093RB-C43). ICN2 was supported by the Severo Ochoa program from Spanish MINECO (grant no. SEV-2017-0706) and was funded by the CERCA Programme/Generalitat de Catalunya. X.H. thanks China Scholarship Council for scholarship support (201804910551). Part of the present work was performed in the framework of Universitat Autònoma de Barcelona Materials Science Ph.D. program. article_processing_charge: No article_type: original author: - first_name: Mengyao full_name: Li, Mengyao last_name: Li - first_name: Yu full_name: Liu, Yu id: 2A70014E-F248-11E8-B48F-1D18A9856A87 last_name: Liu orcid: 0000-0001-7313-6740 - first_name: Yu full_name: Zhang, Yu last_name: Zhang - first_name: Xu full_name: Han, Xu last_name: Han - first_name: Ke full_name: Xiao, Ke last_name: Xiao - first_name: Mehran full_name: Nabahat, Mehran last_name: Nabahat - first_name: Jordi full_name: Arbiol, Jordi last_name: Arbiol - first_name: Jordi full_name: Llorca, Jordi last_name: Llorca - first_name: Maria full_name: Ibáñez, Maria id: 43C61214-F248-11E8-B48F-1D18A9856A87 last_name: Ibáñez orcid: 0000-0001-5013-2843 - first_name: Andreu full_name: Cabot, Andreu last_name: Cabot citation: ama: Li M, Liu Y, Zhang Y, et al. PbS–Pb–CuxS composites for thermoelectric application. ACS Applied Materials and Interfaces. 2021;13(43):51373–51382. doi:10.1021/acsami.1c15609 apa: Li, M., Liu, Y., Zhang, Y., Han, X., Xiao, K., Nabahat, M., … Cabot, A. (2021). PbS–Pb–CuxS composites for thermoelectric application. ACS Applied Materials and Interfaces. American Chemical Society . https://doi.org/10.1021/acsami.1c15609 chicago: Li, Mengyao, Yu Liu, Yu Zhang, Xu Han, Ke Xiao, Mehran Nabahat, Jordi Arbiol, Jordi Llorca, Maria Ibáñez, and Andreu Cabot. “PbS–Pb–CuxS Composites for Thermoelectric Application.” ACS Applied Materials and Interfaces. American Chemical Society , 2021. https://doi.org/10.1021/acsami.1c15609. ieee: M. Li et al., “PbS–Pb–CuxS composites for thermoelectric application,” ACS Applied Materials and Interfaces, vol. 13, no. 43. American Chemical Society , pp. 51373–51382, 2021. ista: Li M, Liu Y, Zhang Y, Han X, Xiao K, Nabahat M, Arbiol J, Llorca J, Ibáñez M, Cabot A. 2021. PbS–Pb–CuxS composites for thermoelectric application. ACS Applied Materials and Interfaces. 13(43), 51373–51382. mla: Li, Mengyao, et al. “PbS–Pb–CuxS Composites for Thermoelectric Application.” ACS Applied Materials and Interfaces, vol. 13, no. 43, American Chemical Society , 2021, pp. 51373–51382, doi:10.1021/acsami.1c15609. short: M. Li, Y. Liu, Y. Zhang, X. Han, K. Xiao, M. Nabahat, J. Arbiol, J. Llorca, M. Ibáñez, A. Cabot, ACS Applied Materials and Interfaces 13 (2021) 51373–51382. date_created: 2021-11-21T23:01:30Z date_published: 2021-10-19T00:00:00Z date_updated: 2023-10-03T09:55:33Z day: '19' department: - _id: MaIb doi: 10.1021/acsami.1c15609 ec_funded: 1 external_id: isi: - '000715852100070' pmid: - '34665616' intvolume: ' 13' isi: 1 issue: '43' keyword: - CuxS - PbS - energy conversion - nanocomposite - nanoparticle - solution synthesis - thermoelectric language: - iso: eng main_file_link: - open_access: '1' url: https://upcommons.upc.edu/bitstream/2117/363528/1/Pb%20mengyao.pdf month: '10' oa: 1 oa_version: Submitted Version page: 51373–51382 pmid: 1 project: - _id: 260C2330-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '754411' name: ISTplus - Postdoctoral Fellowships - _id: 9B8F7476-BA93-11EA-9121-9846C619BF3A name: 'HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of Semiconductors for Waste Heat Recovery' publication: ACS Applied Materials and Interfaces publication_identifier: eissn: - 1944-8252 issn: - 1944-8244 publication_status: published publisher: 'American Chemical Society ' quality_controlled: '1' scopus_import: '1' status: public title: PbS–Pb–CuxS composites for thermoelectric application type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 13 year: '2021' ... --- _id: '9235' abstract: - lang: eng text: Cu2–xS has become one of the most promising thermoelectric materials for application in the middle-high temperature range. Its advantages include the abundance, low cost, and safety of its elements and a high performance at relatively elevated temperatures. However, stability issues limit its operation current and temperature, thus calling for the optimization of the material performance in the middle temperature range. Here, we present a synthetic protocol for large scale production of covellite CuS nanoparticles at ambient temperature and atmosphere, and using water as a solvent. The crystal phase and stoichiometry of the particles are afterward tuned through an annealing process at a moderate temperature under inert or reducing atmosphere. While annealing under argon results in Cu1.8S nanopowder with a rhombohedral crystal phase, annealing in an atmosphere containing hydrogen leads to tetragonal Cu1.96S. High temperature X-ray diffraction analysis shows the material annealed in argon to transform to the cubic phase at ca. 400 K, while the material annealed in the presence of hydrogen undergoes two phase transitions, first to hexagonal and then to the cubic structure. The annealing atmosphere, temperature, and time allow adjustment of the density of copper vacancies and thus tuning of the charge carrier concentration and material transport properties. In this direction, the material annealed under Ar is characterized by higher electrical conductivities but lower Seebeck coefficients than the material annealed in the presence of hydrogen. By optimizing the charge carrier concentration through the annealing time, Cu2–xS with record figures of merit in the middle temperature range, up to 1.41 at 710 K, is obtained. We finally demonstrate that this strategy, based on a low-cost and scalable solution synthesis process, is also suitable for the production of high performance Cu2–xS layers using high throughput and cost-effective printing technologies. acknowledgement: This work was supported by the European Regional Development Funds. M.Y.L., X.H., T.Z., and K.X. thank the China Scholarship Council for scholarship support. M.I. acknowledges financial support from IST Austria. J.L. acknowledges support from the National Natural Science Foundation of China (No. 22008091), the funding for scientific research startup of Jiangsu University (No. 19JDG044), and Jiangsu Provincial Program for High-Level Innovative and Entrepreneurial Talents Introduction. J.L. is a Serra Húnter fellow and is grateful to the ICREA Academia program and projects MICINN/FEDER RTI2018-093996-B-C31 and GC 2017 SGR 128. ICN2 acknowledges funding from Generalitat de Catalunya 2017 SGR 327 and the Spanish MINECO ENE2017-85087-C3. ICN2 is supported by the Severo Ochoa program from Spanish MINECO (Grant No. SEV-2017-0706) and is funded by the CERCA Programme/Generalitat de Catalunya. Part of the present work has been performed in the framework of Universitat Autònoma de Barcelona Materials Science PhD program. T.Z. has received funding from the CSC-UAB PhD scholarship program. article_processing_charge: No article_type: original author: - first_name: Mengyao full_name: Li, Mengyao last_name: Li - first_name: Yu full_name: Liu, Yu id: 2A70014E-F248-11E8-B48F-1D18A9856A87 last_name: Liu orcid: 0000-0001-7313-6740 - first_name: Yu full_name: Zhang, Yu last_name: Zhang - first_name: Xu full_name: Han, Xu last_name: Han - first_name: Ting full_name: Zhang, Ting last_name: Zhang - first_name: Yong full_name: Zuo, Yong last_name: Zuo - first_name: Chenyang full_name: Xie, Chenyang last_name: Xie - first_name: Ke full_name: Xiao, Ke last_name: Xiao - first_name: Jordi full_name: Arbiol, Jordi last_name: Arbiol - first_name: Jordi full_name: Llorca, Jordi last_name: Llorca - first_name: Maria full_name: Ibáñez, Maria id: 43C61214-F248-11E8-B48F-1D18A9856A87 last_name: Ibáñez orcid: 0000-0001-5013-2843 - first_name: Junfeng full_name: Liu, Junfeng last_name: Liu - first_name: Andreu full_name: Cabot, Andreu last_name: Cabot citation: ama: Li M, Liu Y, Zhang Y, et al. Effect of the annealing atmosphere on crystal phase and thermoelectric properties of copper sulfide. ACS Nano. 2021;15(3):4967–4978. doi:10.1021/acsnano.0c09866 apa: Li, M., Liu, Y., Zhang, Y., Han, X., Zhang, T., Zuo, Y., … Cabot, A. (2021). Effect of the annealing atmosphere on crystal phase and thermoelectric properties of copper sulfide. ACS Nano. American Chemical Society . https://doi.org/10.1021/acsnano.0c09866 chicago: Li, Mengyao, Yu Liu, Yu Zhang, Xu Han, Ting Zhang, Yong Zuo, Chenyang Xie, et al. “Effect of the Annealing Atmosphere on Crystal Phase and Thermoelectric Properties of Copper Sulfide.” ACS Nano. American Chemical Society , 2021. https://doi.org/10.1021/acsnano.0c09866. ieee: M. Li et al., “Effect of the annealing atmosphere on crystal phase and thermoelectric properties of copper sulfide,” ACS Nano, vol. 15, no. 3. American Chemical Society , pp. 4967–4978, 2021. ista: Li M, Liu Y, Zhang Y, Han X, Zhang T, Zuo Y, Xie C, Xiao K, Arbiol J, Llorca J, Ibáñez M, Liu J, Cabot A. 2021. Effect of the annealing atmosphere on crystal phase and thermoelectric properties of copper sulfide. ACS Nano. 15(3), 4967–4978. mla: Li, Mengyao, et al. “Effect of the Annealing Atmosphere on Crystal Phase and Thermoelectric Properties of Copper Sulfide.” ACS Nano, vol. 15, no. 3, American Chemical Society , 2021, pp. 4967–4978, doi:10.1021/acsnano.0c09866. short: M. Li, Y. Liu, Y. Zhang, X. Han, T. Zhang, Y. Zuo, C. Xie, K. Xiao, J. Arbiol, J. Llorca, M. Ibáñez, J. Liu, A. Cabot, ACS Nano 15 (2021) 4967–4978. date_created: 2021-03-10T20:12:45Z date_published: 2021-03-01T00:00:00Z date_updated: 2023-10-03T09:59:55Z day: '01' department: - _id: MaIb doi: 10.1021/acsnano.0c09866 external_id: isi: - '000634569100106' pmid: - '33645986' intvolume: ' 15' isi: 1 issue: '3' keyword: - General Engineering - General Physics and Astronomy - General Materials Science language: - iso: eng main_file_link: - open_access: '1' url: https://upcommons.upc.edu/bitstream/handle/2117/363528/Pb%20mengyao.pdf?sequence=1&isAllowed=y month: '03' oa: 1 oa_version: Submitted Version page: 4967–4978 pmid: 1 publication: ACS Nano publication_identifier: eissn: - 1936-086X issn: - 1936-0851 publication_status: published publisher: 'American Chemical Society ' quality_controlled: '1' scopus_import: '1' status: public title: Effect of the annealing atmosphere on crystal phase and thermoelectric properties of copper sulfide type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 15 year: '2021' ... --- _id: '10204' abstract: - lang: eng text: Two common representations of close packings of identical spheres consisting of hexagonal layers, called Barlow stackings, appear abundantly in minerals and metals. These motifs, however, occupy an identical portion of space and bear identical first-order topological signatures as measured by persistent homology. Here we present a novel method based on k-fold covers that unambiguously distinguishes between these patterns. Moreover, our approach provides topological evidence that the FCC motif is the more stable of the two in the context of evolving experimental sphere packings during the transition from disordered to an ordered state. We conclude that our approach can be generalised to distinguish between various Barlow stackings manifested in minerals and metals. acknowledgement: MS acknowledges the support by Australian Research Council funding through the ARC Training Centre for M3D Innovation (IC180100008). MS thanks M. Hanifpour and N. Francois for their input and valuable discussions. This project has received funding from the European Research Council (ERC) under the European Union's Horizon 2020 research and innovation programme, grant no. 788183 and from the Wittgenstein Prize, Austrian Science Fund (FWF), grant no. Z 342-N31. article_processing_charge: No article_type: original author: - first_name: Georg F full_name: Osang, Georg F id: 464B40D6-F248-11E8-B48F-1D18A9856A87 last_name: Osang orcid: 0000-0002-8882-5116 - first_name: Herbert full_name: Edelsbrunner, Herbert id: 3FB178DA-F248-11E8-B48F-1D18A9856A87 last_name: Edelsbrunner orcid: 0000-0002-9823-6833 - first_name: Mohammad full_name: Saadatfar, Mohammad last_name: Saadatfar citation: ama: Osang GF, Edelsbrunner H, Saadatfar M. Topological signatures and stability of hexagonal close packing and Barlow stackings. Soft Matter. 2021;17(40):9107-9115. doi:10.1039/d1sm00774b apa: Osang, G. F., Edelsbrunner, H., & Saadatfar, M. (2021). Topological signatures and stability of hexagonal close packing and Barlow stackings. Soft Matter. Royal Society of Chemistry . https://doi.org/10.1039/d1sm00774b chicago: Osang, Georg F, Herbert Edelsbrunner, and Mohammad Saadatfar. “Topological Signatures and Stability of Hexagonal Close Packing and Barlow Stackings.” Soft Matter. Royal Society of Chemistry , 2021. https://doi.org/10.1039/d1sm00774b. ieee: G. F. Osang, H. Edelsbrunner, and M. Saadatfar, “Topological signatures and stability of hexagonal close packing and Barlow stackings,” Soft Matter, vol. 17, no. 40. Royal Society of Chemistry , pp. 9107–9115, 2021. ista: Osang GF, Edelsbrunner H, Saadatfar M. 2021. Topological signatures and stability of hexagonal close packing and Barlow stackings. Soft Matter. 17(40), 9107–9115. mla: Osang, Georg F., et al. “Topological Signatures and Stability of Hexagonal Close Packing and Barlow Stackings.” Soft Matter, vol. 17, no. 40, Royal Society of Chemistry , 2021, pp. 9107–15, doi:10.1039/d1sm00774b. short: G.F. Osang, H. Edelsbrunner, M. Saadatfar, Soft Matter 17 (2021) 9107–9115. date_created: 2021-10-31T23:01:30Z date_published: 2021-10-20T00:00:00Z date_updated: 2023-10-03T09:24:27Z day: '20' ddc: - '540' department: - _id: HeEd doi: 10.1039/d1sm00774b ec_funded: 1 external_id: isi: - '000700090000001' pmid: - '34569592' file: - access_level: open_access checksum: b4da0c420530295e61b153960f6cb350 content_type: application/pdf creator: dernst date_created: 2023-10-03T09:21:42Z date_updated: 2023-10-03T09:21:42Z file_id: '14385' file_name: 2021_SoftMatter_acceptedversion_Osang.pdf file_size: 4678788 relation: main_file success: 1 file_date_updated: 2023-10-03T09:21:42Z has_accepted_license: '1' intvolume: ' 17' isi: 1 issue: '40' language: - iso: eng month: '10' oa: 1 oa_version: Submitted Version page: 9107-9115 pmid: 1 project: - _id: 266A2E9E-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '788183' name: Alpha Shape Theory Extended - _id: 268116B8-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: Z00342 name: The Wittgenstein Prize publication: Soft Matter publication_identifier: eissn: - 1744-6848 issn: - 1744-683X publication_status: published publisher: 'Royal Society of Chemistry ' quality_controlled: '1' scopus_import: '1' status: public title: Topological signatures and stability of hexagonal close packing and Barlow stackings type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 17 year: '2021' ... --- _id: '9464' abstract: - lang: eng text: We firstly introduce the self-assembled growth of highly uniform Ge quantum wires with controllable position, distance and length on patterned Si (001) substrates. We then present the electrically tunable strong spin-orbit coupling, the first Ge hole spin qubit and ultrafast operation of hole spin qubit in the Ge/Si quantum wires. acknowledgement: This work was supported by the National Key R&D Program of China (Grant No. 2016YFA0301700) and the ERC Starting Grant no. 335497. article_number: '9420817' article_processing_charge: No author: - first_name: Fei full_name: Gao, Fei last_name: Gao - first_name: Jie Yin full_name: Zhang, Jie Yin last_name: Zhang - first_name: Jian Huan full_name: Wang, Jian Huan last_name: Wang - first_name: Ming full_name: Ming, Ming last_name: Ming - first_name: Tina full_name: Wang, Tina last_name: Wang - first_name: Jian Jun full_name: Zhang, Jian Jun last_name: Zhang - first_name: Hannes full_name: Watzinger, Hannes id: 35DF8E50-F248-11E8-B48F-1D18A9856A87 last_name: Watzinger - first_name: Josip full_name: Kukucka, Josip id: 3F5D8856-F248-11E8-B48F-1D18A9856A87 last_name: Kukucka - first_name: Lada full_name: Vukušić, Lada id: 31E9F056-F248-11E8-B48F-1D18A9856A87 last_name: Vukušić orcid: 0000-0003-2424-8636 - first_name: Georgios full_name: Katsaros, Georgios id: 38DB5788-F248-11E8-B48F-1D18A9856A87 last_name: Katsaros orcid: 0000-0001-8342-202X - first_name: Ke full_name: Wang, Ke last_name: Wang - first_name: Gang full_name: Xu, Gang last_name: Xu - first_name: Hai Ou full_name: Li, Hai Ou last_name: Li - first_name: Guo Ping full_name: Guo, Guo Ping last_name: Guo citation: ama: 'Gao F, Zhang JY, Wang JH, et al. Ge/Si quantum wires for quantum computing. In: 2021 5th IEEE Electron Devices Technology and Manufacturing Conference, EDTM 2021. IEEE; 2021. doi:10.1109/EDTM50988.2021.9420817' apa: 'Gao, F., Zhang, J. Y., Wang, J. H., Ming, M., Wang, T., Zhang, J. J., … Guo, G. P. (2021). Ge/Si quantum wires for quantum computing. In 2021 5th IEEE Electron Devices Technology and Manufacturing Conference, EDTM 2021. Virtual, Online: IEEE. https://doi.org/10.1109/EDTM50988.2021.9420817' chicago: Gao, Fei, Jie Yin Zhang, Jian Huan Wang, Ming Ming, Tina Wang, Jian Jun Zhang, Hannes Watzinger, et al. “Ge/Si Quantum Wires for Quantum Computing.” In 2021 5th IEEE Electron Devices Technology and Manufacturing Conference, EDTM 2021. IEEE, 2021. https://doi.org/10.1109/EDTM50988.2021.9420817. ieee: F. Gao et al., “Ge/Si quantum wires for quantum computing,” in 2021 5th IEEE Electron Devices Technology and Manufacturing Conference, EDTM 2021, Virtual, Online, 2021. ista: 'Gao F, Zhang JY, Wang JH, Ming M, Wang T, Zhang JJ, Watzinger H, Kukucka J, Vukušić L, Katsaros G, Wang K, Xu G, Li HO, Guo GP. 2021. Ge/Si quantum wires for quantum computing. 2021 5th IEEE Electron Devices Technology and Manufacturing Conference, EDTM 2021. EDTM: IEEE Electron Devices Technology and Manufacturing Conference, 9420817.' mla: Gao, Fei, et al. “Ge/Si Quantum Wires for Quantum Computing.” 2021 5th IEEE Electron Devices Technology and Manufacturing Conference, EDTM 2021, 9420817, IEEE, 2021, doi:10.1109/EDTM50988.2021.9420817. short: F. Gao, J.Y. Zhang, J.H. Wang, M. Ming, T. Wang, J.J. Zhang, H. Watzinger, J. Kukucka, L. Vukušić, G. Katsaros, K. Wang, G. Xu, H.O. Li, G.P. Guo, in:, 2021 5th IEEE Electron Devices Technology and Manufacturing Conference, EDTM 2021, IEEE, 2021. conference: end_date: 2021-04-11 location: Virtual, Online name: 'EDTM: IEEE Electron Devices Technology and Manufacturing Conference' start_date: 2021-04-08 date_created: 2021-06-06T22:01:29Z date_published: 2021-04-08T00:00:00Z date_updated: 2023-10-03T12:51:59Z day: '08' department: - _id: GeKa doi: 10.1109/EDTM50988.2021.9420817 ec_funded: 1 external_id: isi: - '000675595800006' isi: 1 language: - iso: eng month: '04' oa_version: None project: - _id: 25517E86-B435-11E9-9278-68D0E5697425 call_identifier: FP7 grant_number: '335497' name: Towards Spin qubits and Majorana fermions in Germanium selfassembled hut-wires publication: 2021 5th IEEE Electron Devices Technology and Manufacturing Conference, EDTM 2021 publication_identifier: isbn: - '9781728181769' publication_status: published publisher: IEEE quality_controlled: '1' scopus_import: '1' status: public title: Ge/Si quantum wires for quantum computing type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2021' ... --- _id: '9605' abstract: - lang: eng text: 'Given a finite set A ⊂ ℝ^d, let Cov_{r,k} denote the set of all points within distance r to at least k points of A. Allowing r and k to vary, we obtain a 2-parameter family of spaces that grow larger when r increases or k decreases, called the multicover bifiltration. Motivated by the problem of computing the homology of this bifiltration, we introduce two closely related combinatorial bifiltrations, one polyhedral and the other simplicial, which are both topologically equivalent to the multicover bifiltration and far smaller than a Čech-based model considered in prior work of Sheehy. Our polyhedral construction is a bifiltration of the rhomboid tiling of Edelsbrunner and Osang, and can be efficiently computed using a variant of an algorithm given by these authors as well. Using an implementation for dimension 2 and 3, we provide experimental results. Our simplicial construction is useful for understanding the polyhedral construction and proving its correctness. ' acknowledgement: The authors want to thank the reviewers for many helpful comments and suggestions. alternative_title: - LIPIcs article_number: '27' article_processing_charge: No author: - first_name: René full_name: Corbet, René last_name: Corbet - first_name: Michael full_name: Kerber, Michael last_name: Kerber - first_name: Michael full_name: Lesnick, Michael last_name: Lesnick - first_name: Georg F full_name: Osang, Georg F id: 464B40D6-F248-11E8-B48F-1D18A9856A87 last_name: Osang orcid: 0000-0002-8882-5116 citation: ama: 'Corbet R, Kerber M, Lesnick M, Osang GF. Computing the multicover bifiltration. In: Leibniz International Proceedings in Informatics. Vol 189. Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2021. doi:10.4230/LIPIcs.SoCG.2021.27' apa: 'Corbet, R., Kerber, M., Lesnick, M., & Osang, G. F. (2021). Computing the multicover bifiltration. In Leibniz International Proceedings in Informatics (Vol. 189). Online: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.SoCG.2021.27' chicago: Corbet, René, Michael Kerber, Michael Lesnick, and Georg F Osang. “Computing the Multicover Bifiltration.” In Leibniz International Proceedings in Informatics, Vol. 189. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021. https://doi.org/10.4230/LIPIcs.SoCG.2021.27. ieee: R. Corbet, M. Kerber, M. Lesnick, and G. F. Osang, “Computing the multicover bifiltration,” in Leibniz International Proceedings in Informatics, Online, 2021, vol. 189. ista: 'Corbet R, Kerber M, Lesnick M, Osang GF. 2021. Computing the multicover bifiltration. Leibniz International Proceedings in Informatics. SoCG: International Symposium on Computational Geometry, LIPIcs, vol. 189, 27.' mla: Corbet, René, et al. “Computing the Multicover Bifiltration.” Leibniz International Proceedings in Informatics, vol. 189, 27, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021, doi:10.4230/LIPIcs.SoCG.2021.27. short: R. Corbet, M. Kerber, M. Lesnick, G.F. Osang, in:, Leibniz International Proceedings in Informatics, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021. conference: end_date: 2021-06-11 location: Online name: 'SoCG: International Symposium on Computational Geometry' start_date: 2021-06-07 date_created: 2021-06-27T22:01:49Z date_published: 2021-06-02T00:00:00Z date_updated: 2023-10-04T12:03:39Z day: '02' ddc: - '516' department: - _id: HeEd doi: 10.4230/LIPIcs.SoCG.2021.27 external_id: arxiv: - '2103.07823' file: - access_level: open_access checksum: 0de217501e7ba8b267d58deed0d51761 content_type: application/pdf creator: cziletti date_created: 2021-06-28T12:40:47Z date_updated: 2021-06-28T12:40:47Z file_id: '9610' file_name: 2021_LIPIcs_Corbet.pdf file_size: '1367983' relation: main_file success: 1 file_date_updated: 2021-06-28T12:40:47Z has_accepted_license: '1' intvolume: ' 189' language: - iso: eng month: '06' oa: 1 oa_version: Published Version publication: Leibniz International Proceedings in Informatics publication_identifier: isbn: - '9783959771849' issn: - '18688969' publication_status: published publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik quality_controlled: '1' related_material: link: - relation: extended_version url: https://arxiv.org/abs/2103.07823 record: - id: '12709' relation: later_version status: public scopus_import: '1' status: public title: Computing the multicover bifiltration tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: conference user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425 volume: 189 year: '2021' ... --- _id: '9441' abstract: - lang: eng text: "Isomanifolds are the generalization of isosurfaces to arbitrary dimension and codimension, i.e. submanifolds of ℝ^d defined as the zero set of some multivariate multivalued smooth function f: ℝ^d → ℝ^{d-n}, where n is the intrinsic dimension of the manifold. A natural way to approximate a smooth isomanifold M is to consider its Piecewise-Linear (PL) approximation M̂ based on a triangulation \U0001D4AF of the ambient space ℝ^d. In this paper, we describe a simple algorithm to trace isomanifolds from a given starting point. The algorithm works for arbitrary dimensions n and d, and any precision D. Our main result is that, when f (or M) has bounded complexity, the complexity of the algorithm is polynomial in d and δ = 1/D (and unavoidably exponential in n). Since it is known that for δ = Ω (d^{2.5}), M̂ is O(D²)-close and isotopic to M, our algorithm produces a faithful PL-approximation of isomanifolds of bounded complexity in time polynomial in d. Combining this algorithm with dimensionality reduction techniques, the dependency on d in the size of M̂ can be completely removed with high probability. We also show that the algorithm can handle isomanifolds with boundary and, more generally, isostratifolds. The algorithm for isomanifolds with boundary has been implemented and experimental results are reported, showing that it is practical and can handle cases that are far ahead of the state-of-the-art. " acknowledgement: We thank Dominique Attali, Guilherme de Fonseca, Arijit Ghosh, Vincent Pilaud and Aurélien Alvarez for their comments and suggestions. We also acknowledge the reviewers. alternative_title: - LIPIcs article_processing_charge: No author: - first_name: Jean-Daniel full_name: Boissonnat, Jean-Daniel last_name: Boissonnat - first_name: Siargey full_name: Kachanovich, Siargey last_name: Kachanovich - first_name: Mathijs full_name: Wintraecken, Mathijs id: 307CFBC8-F248-11E8-B48F-1D18A9856A87 last_name: Wintraecken orcid: 0000-0002-7472-2220 citation: ama: 'Boissonnat J-D, Kachanovich S, Wintraecken M. Tracing isomanifolds in Rd in time polynomial in d using Coxeter-Freudenthal-Kuhn triangulations. In: 37th International Symposium on Computational Geometry (SoCG 2021). Vol 189. Leibniz International Proceedings in Informatics (LIPIcs). Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik; 2021:17:1-17:16. doi:10.4230/LIPIcs.SoCG.2021.17' apa: 'Boissonnat, J.-D., Kachanovich, S., & Wintraecken, M. (2021). Tracing isomanifolds in Rd in time polynomial in d using Coxeter-Freudenthal-Kuhn triangulations. In 37th International Symposium on Computational Geometry (SoCG 2021) (Vol. 189, p. 17:1-17:16). Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.SoCG.2021.17' chicago: 'Boissonnat, Jean-Daniel, Siargey Kachanovich, and Mathijs Wintraecken. “Tracing Isomanifolds in Rd in Time Polynomial in d Using Coxeter-Freudenthal-Kuhn Triangulations.” In 37th International Symposium on Computational Geometry (SoCG 2021), 189:17:1-17:16. Leibniz International Proceedings in Informatics (LIPIcs). Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021. https://doi.org/10.4230/LIPIcs.SoCG.2021.17.' ieee: J.-D. Boissonnat, S. Kachanovich, and M. Wintraecken, “Tracing isomanifolds in Rd in time polynomial in d using Coxeter-Freudenthal-Kuhn triangulations,” in 37th International Symposium on Computational Geometry (SoCG 2021), Virtual, 2021, vol. 189, p. 17:1-17:16. ista: 'Boissonnat J-D, Kachanovich S, Wintraecken M. 2021. Tracing isomanifolds in Rd in time polynomial in d using Coxeter-Freudenthal-Kuhn triangulations. 37th International Symposium on Computational Geometry (SoCG 2021). SoCG: Symposium on Computational GeometryLeibniz International Proceedings in Informatics (LIPIcs), LIPIcs, vol. 189, 17:1-17:16.' mla: Boissonnat, Jean-Daniel, et al. “Tracing Isomanifolds in Rd in Time Polynomial in d Using Coxeter-Freudenthal-Kuhn Triangulations.” 37th International Symposium on Computational Geometry (SoCG 2021), vol. 189, Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021, p. 17:1-17:16, doi:10.4230/LIPIcs.SoCG.2021.17. short: J.-D. Boissonnat, S. Kachanovich, M. Wintraecken, in:, 37th International Symposium on Computational Geometry (SoCG 2021), Schloss Dagstuhl - Leibniz-Zentrum für Informatik, Dagstuhl, Germany, 2021, p. 17:1-17:16. conference: end_date: 2021-06-11 location: Virtual name: 'SoCG: Symposium on Computational Geometry' start_date: 2021-06-07 date_created: 2021-06-02T10:10:55Z date_published: 2021-06-02T00:00:00Z date_updated: 2023-10-10T07:34:34Z day: '02' ddc: - '005' - '516' - '514' department: - _id: HeEd doi: 10.4230/LIPIcs.SoCG.2021.17 ec_funded: 1 file: - access_level: open_access checksum: c322aa48d5d35a35877896cc565705b6 content_type: application/pdf creator: mwintrae date_created: 2021-06-02T10:22:33Z date_updated: 2021-06-02T10:22:33Z file_id: '9442' file_name: LIPIcs-SoCG-2021-17.pdf file_size: 1972902 relation: main_file success: 1 file_date_updated: 2021-06-02T10:22:33Z has_accepted_license: '1' intvolume: ' 189' language: - iso: eng month: '06' oa: 1 oa_version: Published Version page: 17:1-17:16 place: Dagstuhl, Germany project: - _id: 260C2330-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '754411' name: ISTplus - Postdoctoral Fellowships publication: 37th International Symposium on Computational Geometry (SoCG 2021) publication_identifier: isbn: - 978-3-95977-184-9 issn: - 1868-8969 publication_status: published publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik quality_controlled: '1' related_material: record: - id: '12960' relation: later_version status: public series_title: Leibniz International Proceedings in Informatics (LIPIcs) status: public title: Tracing isomanifolds in Rd in time polynomial in d using Coxeter-Freudenthal-Kuhn triangulations tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: conference user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425 volume: 189 year: '2021' ... --- _id: '9393' abstract: - lang: eng text: "We consider the core algorithmic problems related to verification of systems with respect to three classical quantitative properties, namely, the mean-payoff, the ratio, and the minimum initial credit for energy property. The algorithmic problem given a graph and a quantitative property asks to compute the optimal value (the infimum value over all traces) from every node of the graph. We consider graphs with bounded treewidth—a class that contains the control flow graphs of most programs. Let n denote the number of nodes of a graph, m the number of edges (for bounded treewidth \U0001D45A=\U0001D442(\U0001D45B)) and W the largest absolute value of the weights. Our main theoretical results are as follows. First, for the minimum initial credit problem we show that (1) for general graphs the problem can be solved in \U0001D442(\U0001D45B2⋅\U0001D45A) time and the associated decision problem in \U0001D442(\U0001D45B⋅\U0001D45A) time, improving the previous known \U0001D442(\U0001D45B3⋅\U0001D45A⋅log(\U0001D45B⋅\U0001D44A)) and \U0001D442(\U0001D45B2⋅\U0001D45A) bounds, respectively; and (2) for bounded treewidth graphs we present an algorithm that requires \U0001D442(\U0001D45B⋅log\U0001D45B) time. Second, for bounded treewidth graphs we present an algorithm that approximates the mean-payoff value within a factor of 1+\U0001D716 in time \U0001D442(\U0001D45B⋅log(\U0001D45B/\U0001D716)) as compared to the classical exact algorithms on general graphs that require quadratic time. Third, for the ratio property we present an algorithm that for bounded treewidth graphs works in time \U0001D442(\U0001D45B⋅log(|\U0001D44E⋅\U0001D44F|))=\U0001D442(\U0001D45B⋅log(\U0001D45B⋅\U0001D44A)), when the output is \U0001D44E\U0001D44F, as compared to the previously best known algorithm on general graphs with running time \U0001D442(\U0001D45B2⋅log(\U0001D45B⋅\U0001D44A)). We have implemented some of our algorithms and show that they present a significant speedup on standard benchmarks." acknowledgement: 'The research was partly supported by Austrian Science Fund (FWF) Grant No P23499- N23, FWF NFN Grant No S11407-N23 (RiSE/SHiNE), ERC Start Grant (279307: Graph Games), and Microsoft faculty fellows award.' article_processing_charge: No article_type: original author: - first_name: Krishnendu full_name: Chatterjee, Krishnendu id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87 last_name: Chatterjee orcid: 0000-0002-4561-241X - first_name: Rasmus full_name: Ibsen-Jensen, Rasmus id: 3B699956-F248-11E8-B48F-1D18A9856A87 last_name: Ibsen-Jensen orcid: 0000-0003-4783-0389 - first_name: Andreas full_name: Pavlogiannis, Andreas id: 49704004-F248-11E8-B48F-1D18A9856A87 last_name: Pavlogiannis orcid: 0000-0002-8943-0722 citation: ama: Chatterjee K, Ibsen-Jensen R, Pavlogiannis A. Faster algorithms for quantitative verification in bounded treewidth graphs. Formal Methods in System Design. 2021;57:401-428. doi:10.1007/s10703-021-00373-5 apa: Chatterjee, K., Ibsen-Jensen, R., & Pavlogiannis, A. (2021). Faster algorithms for quantitative verification in bounded treewidth graphs. Formal Methods in System Design. Springer. https://doi.org/10.1007/s10703-021-00373-5 chicago: Chatterjee, Krishnendu, Rasmus Ibsen-Jensen, and Andreas Pavlogiannis. “Faster Algorithms for Quantitative Verification in Bounded Treewidth Graphs.” Formal Methods in System Design. Springer, 2021. https://doi.org/10.1007/s10703-021-00373-5. ieee: K. Chatterjee, R. Ibsen-Jensen, and A. Pavlogiannis, “Faster algorithms for quantitative verification in bounded treewidth graphs,” Formal Methods in System Design, vol. 57. Springer, pp. 401–428, 2021. ista: Chatterjee K, Ibsen-Jensen R, Pavlogiannis A. 2021. Faster algorithms for quantitative verification in bounded treewidth graphs. Formal Methods in System Design. 57, 401–428. mla: Chatterjee, Krishnendu, et al. “Faster Algorithms for Quantitative Verification in Bounded Treewidth Graphs.” Formal Methods in System Design, vol. 57, Springer, 2021, pp. 401–28, doi:10.1007/s10703-021-00373-5. short: K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, Formal Methods in System Design 57 (2021) 401–428. date_created: 2021-05-16T22:01:47Z date_published: 2021-09-01T00:00:00Z date_updated: 2023-10-10T11:13:20Z day: '01' department: - _id: KrCh doi: 10.1007/s10703-021-00373-5 ec_funded: 1 external_id: arxiv: - '1504.07384' isi: - '000645490300001' intvolume: ' 57' isi: 1 language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/1504.07384 month: '09' oa: 1 oa_version: Preprint page: 401-428 project: - _id: 2584A770-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: P 23499-N23 name: Modern Graph Algorithmic Techniques in Formal Verification - _id: 25832EC2-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: S 11407_N23 name: Rigorous Systems Engineering - _id: 2581B60A-B435-11E9-9278-68D0E5697425 call_identifier: FP7 grant_number: '279307' name: 'Quantitative Graph Games: Theory and Applications' - _id: 2587B514-B435-11E9-9278-68D0E5697425 name: Microsoft Research Faculty Fellowship publication: Formal Methods in System Design publication_identifier: eissn: - 1572-8102 issn: - 0925-9856 publication_status: published publisher: Springer quality_controlled: '1' scopus_import: '1' status: public title: Faster algorithms for quantitative verification in bounded treewidth graphs type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 57 year: '2021' ... --- _id: '9227' abstract: - lang: eng text: In the multiway cut problem we are given a weighted undirected graph G=(V,E) and a set T⊆V of k terminals. The goal is to find a minimum weight set of edges E′⊆E with the property that by removing E′ from G all the terminals become disconnected. In this paper we present a simple local search approximation algorithm for the multiway cut problem with approximation ratio 2−2k . We present an experimental evaluation of the performance of our local search algorithm and show that it greatly outperforms the isolation heuristic of Dalhaus et al. and it has similar performance as the much more complex algorithms of Calinescu et al., Sharma and Vondrak, and Buchbinder et al. which have the currently best known approximation ratios for this problem. alternative_title: - LNCS article_processing_charge: No author: - first_name: Andrew full_name: Bloch-Hansen, Andrew last_name: Bloch-Hansen - first_name: Nasim full_name: Samei, Nasim id: C1531CAE-36E9-11EA-845F-33AA3DDC885E last_name: Samei - first_name: Roberto full_name: Solis-Oba, Roberto last_name: Solis-Oba citation: ama: 'Bloch-Hansen A, Samei N, Solis-Oba R. Experimental evaluation of a local search approximation algorithm for the multiway cut problem. In: Conference on Algorithms and Discrete Applied Mathematics. Vol 12601. Springer Nature; 2021:346-358. doi:10.1007/978-3-030-67899-9_28' apa: 'Bloch-Hansen, A., Samei, N., & Solis-Oba, R. (2021). Experimental evaluation of a local search approximation algorithm for the multiway cut problem. In Conference on Algorithms and Discrete Applied Mathematics (Vol. 12601, pp. 346–358). Rupnagar, India: Springer Nature. https://doi.org/10.1007/978-3-030-67899-9_28' chicago: Bloch-Hansen, Andrew, Nasim Samei, and Roberto Solis-Oba. “Experimental Evaluation of a Local Search Approximation Algorithm for the Multiway Cut Problem.” In Conference on Algorithms and Discrete Applied Mathematics, 12601:346–58. Springer Nature, 2021. https://doi.org/10.1007/978-3-030-67899-9_28. ieee: A. Bloch-Hansen, N. Samei, and R. Solis-Oba, “Experimental evaluation of a local search approximation algorithm for the multiway cut problem,” in Conference on Algorithms and Discrete Applied Mathematics, Rupnagar, India, 2021, vol. 12601, pp. 346–358. ista: 'Bloch-Hansen A, Samei N, Solis-Oba R. 2021. Experimental evaluation of a local search approximation algorithm for the multiway cut problem. Conference on Algorithms and Discrete Applied Mathematics. CALDAM: Conference on Algorithms and Discrete Applied Mathematics, LNCS, vol. 12601, 346–358.' mla: Bloch-Hansen, Andrew, et al. “Experimental Evaluation of a Local Search Approximation Algorithm for the Multiway Cut Problem.” Conference on Algorithms and Discrete Applied Mathematics, vol. 12601, Springer Nature, 2021, pp. 346–58, doi:10.1007/978-3-030-67899-9_28. short: A. Bloch-Hansen, N. Samei, R. Solis-Oba, in:, Conference on Algorithms and Discrete Applied Mathematics, Springer Nature, 2021, pp. 346–358. conference: end_date: 2021-02-13 location: Rupnagar, India name: 'CALDAM: Conference on Algorithms and Discrete Applied Mathematics' start_date: 2021-02-11 date_created: 2021-03-07T23:01:25Z date_published: 2021-01-28T00:00:00Z date_updated: 2023-10-10T09:29:08Z day: '28' department: - _id: VlKo doi: 10.1007/978-3-030-67899-9_28 intvolume: ' 12601' language: - iso: eng month: '01' oa_version: None page: 346-358 publication: Conference on Algorithms and Discrete Applied Mathematics publication_identifier: eissn: - 1611-3349 isbn: - '9783030678982' issn: - 0302-9743 publication_status: published publisher: Springer Nature quality_controlled: '1' scopus_import: '1' status: public title: Experimental evaluation of a local search approximation algorithm for the multiway cut problem type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 12601 year: '2021' ... --- _id: '8817' abstract: - lang: eng text: The paper introduces an inertial extragradient subgradient method with self-adaptive step sizes for solving equilibrium problems in real Hilbert spaces. Weak convergence of the proposed method is obtained under the condition that the bifunction is pseudomonotone and Lipchitz continuous. Linear convergence is also given when the bifunction is strongly pseudomonotone and Lipchitz continuous. Numerical implementations and comparisons with other related inertial methods are given using test problems including a real-world application to Nash–Cournot oligopolistic electricity market equilibrium model. acknowledgement: The authors are grateful to the two referees and the Associate Editor for their comments and suggestions which have improved the earlier version of the paper greatly. The project of Yekini Shehu has received funding from the European Research Council (ERC) under the European Union’s Seventh Framework Program (FP7 - 2007-2013) (Grant agreement No. 616160). article_processing_charge: No article_type: original author: - first_name: Yekini full_name: Shehu, Yekini id: 3FC7CB58-F248-11E8-B48F-1D18A9856A87 last_name: Shehu orcid: 0000-0001-9224-7139 - first_name: Olaniyi S. full_name: Iyiola, Olaniyi S. last_name: Iyiola - first_name: Duong Viet full_name: Thong, Duong Viet last_name: Thong - first_name: Nguyen Thi Cam full_name: Van, Nguyen Thi Cam last_name: Van citation: ama: Shehu Y, Iyiola OS, Thong DV, Van NTC. An inertial subgradient extragradient algorithm extended to pseudomonotone equilibrium problems. Mathematical Methods of Operations Research. 2021;93(2):213-242. doi:10.1007/s00186-020-00730-w apa: Shehu, Y., Iyiola, O. S., Thong, D. V., & Van, N. T. C. (2021). An inertial subgradient extragradient algorithm extended to pseudomonotone equilibrium problems. Mathematical Methods of Operations Research. Springer Nature. https://doi.org/10.1007/s00186-020-00730-w chicago: Shehu, Yekini, Olaniyi S. Iyiola, Duong Viet Thong, and Nguyen Thi Cam Van. “An Inertial Subgradient Extragradient Algorithm Extended to Pseudomonotone Equilibrium Problems.” Mathematical Methods of Operations Research. Springer Nature, 2021. https://doi.org/10.1007/s00186-020-00730-w. ieee: Y. Shehu, O. S. Iyiola, D. V. Thong, and N. T. C. Van, “An inertial subgradient extragradient algorithm extended to pseudomonotone equilibrium problems,” Mathematical Methods of Operations Research, vol. 93, no. 2. Springer Nature, pp. 213–242, 2021. ista: Shehu Y, Iyiola OS, Thong DV, Van NTC. 2021. An inertial subgradient extragradient algorithm extended to pseudomonotone equilibrium problems. Mathematical Methods of Operations Research. 93(2), 213–242. mla: Shehu, Yekini, et al. “An Inertial Subgradient Extragradient Algorithm Extended to Pseudomonotone Equilibrium Problems.” Mathematical Methods of Operations Research, vol. 93, no. 2, Springer Nature, 2021, pp. 213–42, doi:10.1007/s00186-020-00730-w. short: Y. Shehu, O.S. Iyiola, D.V. Thong, N.T.C. Van, Mathematical Methods of Operations Research 93 (2021) 213–242. date_created: 2020-11-29T23:01:18Z date_published: 2021-04-01T00:00:00Z date_updated: 2023-10-10T09:30:23Z day: '01' department: - _id: VlKo doi: 10.1007/s00186-020-00730-w ec_funded: 1 external_id: isi: - '000590497300001' intvolume: ' 93' isi: 1 issue: '2' language: - iso: eng month: '04' oa_version: None page: 213-242 project: - _id: 25FBA906-B435-11E9-9278-68D0E5697425 call_identifier: FP7 grant_number: '616160' name: 'Discrete Optimization in Computer Vision: Theory and Practice' publication: Mathematical Methods of Operations Research publication_identifier: eissn: - 1432-5217 issn: - 1432-2994 publication_status: published publisher: Springer Nature quality_controlled: '1' scopus_import: '1' status: public title: An inertial subgradient extragradient algorithm extended to pseudomonotone equilibrium problems type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 93 year: '2021' ... --- _id: '9315' abstract: - lang: eng text: We consider inertial iteration methods for Fermat–Weber location problem and primal–dual three-operator splitting in real Hilbert spaces. To do these, we first obtain weak convergence analysis and nonasymptotic O(1/n) convergence rate of the inertial Krasnoselskii–Mann iteration for fixed point of nonexpansive operators in infinite dimensional real Hilbert spaces under some seemingly easy to implement conditions on the iterative parameters. One of our contributions is that the convergence analysis and rate of convergence results are obtained using conditions which appear not complicated and restrictive as assumed in other previous related results in the literature. We then show that Fermat–Weber location problem and primal–dual three-operator splitting are special cases of fixed point problem of nonexpansive mapping and consequently obtain the convergence analysis of inertial iteration methods for Fermat–Weber location problem and primal–dual three-operator splitting in real Hilbert spaces. Some numerical implementations are drawn from primal–dual three-operator splitting to support the theoretical analysis. acknowledgement: The research of this author is supported by the Postdoctoral Fellowship from Institute of Science and Technology (IST), Austria. article_number: '75' article_processing_charge: No article_type: original author: - first_name: Olaniyi S. full_name: Iyiola, Olaniyi S. last_name: Iyiola - first_name: Yekini full_name: Shehu, Yekini id: 3FC7CB58-F248-11E8-B48F-1D18A9856A87 last_name: Shehu orcid: 0000-0001-9224-7139 citation: ama: Iyiola OS, Shehu Y. New convergence results for inertial Krasnoselskii–Mann iterations in Hilbert spaces with applications. Results in Mathematics. 2021;76(2). doi:10.1007/s00025-021-01381-x apa: Iyiola, O. S., & Shehu, Y. (2021). New convergence results for inertial Krasnoselskii–Mann iterations in Hilbert spaces with applications. Results in Mathematics. Springer Nature. https://doi.org/10.1007/s00025-021-01381-x chicago: Iyiola, Olaniyi S., and Yekini Shehu. “New Convergence Results for Inertial Krasnoselskii–Mann Iterations in Hilbert Spaces with Applications.” Results in Mathematics. Springer Nature, 2021. https://doi.org/10.1007/s00025-021-01381-x. ieee: O. S. Iyiola and Y. Shehu, “New convergence results for inertial Krasnoselskii–Mann iterations in Hilbert spaces with applications,” Results in Mathematics, vol. 76, no. 2. Springer Nature, 2021. ista: Iyiola OS, Shehu Y. 2021. New convergence results for inertial Krasnoselskii–Mann iterations in Hilbert spaces with applications. Results in Mathematics. 76(2), 75. mla: Iyiola, Olaniyi S., and Yekini Shehu. “New Convergence Results for Inertial Krasnoselskii–Mann Iterations in Hilbert Spaces with Applications.” Results in Mathematics, vol. 76, no. 2, 75, Springer Nature, 2021, doi:10.1007/s00025-021-01381-x. short: O.S. Iyiola, Y. Shehu, Results in Mathematics 76 (2021). date_created: 2021-04-11T22:01:14Z date_published: 2021-03-25T00:00:00Z date_updated: 2023-10-10T09:47:33Z day: '25' department: - _id: VlKo doi: 10.1007/s00025-021-01381-x external_id: isi: - '000632917700001' intvolume: ' 76' isi: 1 issue: '2' language: - iso: eng month: '03' oa_version: None publication: Results in Mathematics publication_identifier: eissn: - 1420-9012 issn: - 1422-6383 publication_status: published publisher: Springer Nature quality_controlled: '1' scopus_import: '1' status: public title: New convergence results for inertial Krasnoselskii–Mann iterations in Hilbert spaces with applications type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 76 year: '2021' ... --- _id: '9365' abstract: - lang: eng text: In this paper, we propose a new iterative method with alternated inertial step for solving split common null point problem in real Hilbert spaces. We obtain weak convergence of the proposed iterative algorithm. Furthermore, we introduce the notion of bounded linear regularity property for the split common null point problem and obtain the linear convergence property for the new algorithm under some mild assumptions. Finally, we provide some numerical examples to demonstrate the performance and efficiency of the proposed method. acknowledgement: The second author has received funding from the European Research Council (ERC) under the European Union's Seventh Framework Program (FP7-2007-2013) (Grant agreement No. 616160). article_processing_charge: No article_type: original author: - first_name: Ferdinard U. full_name: Ogbuisi, Ferdinard U. last_name: Ogbuisi - first_name: Yekini full_name: Shehu, Yekini id: 3FC7CB58-F248-11E8-B48F-1D18A9856A87 last_name: Shehu orcid: 0000-0001-9224-7139 - first_name: Jen Chih full_name: Yao, Jen Chih last_name: Yao citation: ama: Ogbuisi FU, Shehu Y, Yao JC. Convergence analysis of new inertial method for the split common null point problem. Optimization. 2021. doi:10.1080/02331934.2021.1914035 apa: Ogbuisi, F. U., Shehu, Y., & Yao, J. C. (2021). Convergence analysis of new inertial method for the split common null point problem. Optimization. Taylor and Francis. https://doi.org/10.1080/02331934.2021.1914035 chicago: Ogbuisi, Ferdinard U., Yekini Shehu, and Jen Chih Yao. “Convergence Analysis of New Inertial Method for the Split Common Null Point Problem.” Optimization. Taylor and Francis, 2021. https://doi.org/10.1080/02331934.2021.1914035. ieee: F. U. Ogbuisi, Y. Shehu, and J. C. Yao, “Convergence analysis of new inertial method for the split common null point problem,” Optimization. Taylor and Francis, 2021. ista: Ogbuisi FU, Shehu Y, Yao JC. 2021. Convergence analysis of new inertial method for the split common null point problem. Optimization. mla: Ogbuisi, Ferdinard U., et al. “Convergence Analysis of New Inertial Method for the Split Common Null Point Problem.” Optimization, Taylor and Francis, 2021, doi:10.1080/02331934.2021.1914035. short: F.U. Ogbuisi, Y. Shehu, J.C. Yao, Optimization (2021). date_created: 2021-05-02T22:01:29Z date_published: 2021-04-14T00:00:00Z date_updated: 2023-10-10T09:48:41Z day: '14' department: - _id: VlKo doi: 10.1080/02331934.2021.1914035 ec_funded: 1 external_id: isi: - '000640109300001' isi: 1 language: - iso: eng month: '04' oa_version: None project: - _id: 25FBA906-B435-11E9-9278-68D0E5697425 call_identifier: FP7 grant_number: '616160' name: 'Discrete Optimization in Computer Vision: Theory and Practice' publication: Optimization publication_identifier: eissn: - 1029-4945 issn: - 0233-1934 publication_status: published publisher: Taylor and Francis quality_controlled: '1' scopus_import: '1' status: public title: Convergence analysis of new inertial method for the split common null point problem type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2021' ... --- _id: '10365' abstract: - lang: eng text: The early development of many organisms involves the folding of cell monolayers, but this behaviour is difficult to reproduce in vitro; therefore, both mechanistic causes and effects of local curvature remain unclear. Here we study epithelial cell monolayers on corrugated hydrogels engineered into wavy patterns, examining how concave and convex curvatures affect cellular and nuclear shape. We find that substrate curvature affects monolayer thickness, which is larger in valleys than crests. We show that this feature generically arises in a vertex model, leading to the hypothesis that cells may sense curvature by modifying the thickness of the tissue. We find that local curvature also affects nuclear morphology and positioning, which we explain by extending the vertex model to take into account membrane–nucleus interactions, encoding thickness modulation in changes to nuclear deformation and position. We propose that curvature governs the spatial distribution of yes-associated proteins via nuclear shape and density changes. We show that curvature also induces significant variations in lamins, chromatin condensation and cell proliferation rate in folded epithelial tissues. Together, this work identifies active cell mechanics and nuclear mechanoadaptation as the key players of the mechanistic regulation of epithelia to substrate curvature. acknowledgement: S.G. acknowledges funding from FEDER Prostem Research Project no. 1510614 (Wallonia DG06), F.R.S.-FNRS Epiforce Research Project no. T.0092.21 and Interreg MAT(T)ISSE project, which is financially supported by Interreg France-Wallonie-Vlaanderen (Fonds Européen de Développement Régional, FEDER-ERDF). This project was supported by the European Research Council under the European Union’s Horizon 2020 Research and Innovation Programme grant agreement 851288 (to E.H.), and by the Austrian Science Fund (FWF) (P 31639; to E.H.). L.R.M. acknowledges funding from the Agence National de la Recherche (ANR), as part of the ‘Investments d’Avenir’ Programme (I-SITE ULNE/ANR-16-IDEX-0004 ULNE). This work benefited from ANR-10-EQPX-04-01 and FEDER 12001407 grants to F.L. W.D.V. is supported by the Research Foundation Flanders (FWO 1516619N, FWO GOO5819N, FWO I003420N, FWO IRI I000321N) and is member of the Research Excellence Consortium µNEURO at the University of Antwerp. M.L. is financially supported by FRIA (F.R.S.-FNRS). M.S. is a Senior Research Associate of the Fund for Scientific Research (F.R.S.-FNRS) and acknowledges EOS grant no. 30650939 (PRECISION). Sketches in Figs. 1a and 5e and Extended Data Fig. 9 were drawn by C. Levicek. article_processing_charge: No article_type: original author: - first_name: Marine full_name: Luciano, Marine last_name: Luciano - first_name: Shi-lei full_name: Xue, Shi-lei id: 31D2C804-F248-11E8-B48F-1D18A9856A87 last_name: Xue - first_name: Winnok H. full_name: De Vos, Winnok H. last_name: De Vos - first_name: Lorena full_name: Redondo-Morata, Lorena last_name: Redondo-Morata - first_name: Mathieu full_name: Surin, Mathieu last_name: Surin - first_name: Frank full_name: Lafont, Frank last_name: Lafont - first_name: Edouard B full_name: Hannezo, Edouard B id: 3A9DB764-F248-11E8-B48F-1D18A9856A87 last_name: Hannezo orcid: 0000-0001-6005-1561 - first_name: Sylvain full_name: Gabriele, Sylvain last_name: Gabriele citation: ama: Luciano M, Xue S, De Vos WH, et al. Cell monolayers sense curvature by exploiting active mechanics and nuclear mechanoadaptation. Nature Physics. 2021;17(12):1382–1390. doi:10.1038/s41567-021-01374-1 apa: Luciano, M., Xue, S., De Vos, W. H., Redondo-Morata, L., Surin, M., Lafont, F., … Gabriele, S. (2021). Cell monolayers sense curvature by exploiting active mechanics and nuclear mechanoadaptation. Nature Physics. Springer Nature. https://doi.org/10.1038/s41567-021-01374-1 chicago: Luciano, Marine, Shi-lei Xue, Winnok H. De Vos, Lorena Redondo-Morata, Mathieu Surin, Frank Lafont, Edouard B Hannezo, and Sylvain Gabriele. “Cell Monolayers Sense Curvature by Exploiting Active Mechanics and Nuclear Mechanoadaptation.” Nature Physics. Springer Nature, 2021. https://doi.org/10.1038/s41567-021-01374-1. ieee: M. Luciano et al., “Cell monolayers sense curvature by exploiting active mechanics and nuclear mechanoadaptation,” Nature Physics, vol. 17, no. 12. Springer Nature, pp. 1382–1390, 2021. ista: Luciano M, Xue S, De Vos WH, Redondo-Morata L, Surin M, Lafont F, Hannezo EB, Gabriele S. 2021. Cell monolayers sense curvature by exploiting active mechanics and nuclear mechanoadaptation. Nature Physics. 17(12), 1382–1390. mla: Luciano, Marine, et al. “Cell Monolayers Sense Curvature by Exploiting Active Mechanics and Nuclear Mechanoadaptation.” Nature Physics, vol. 17, no. 12, Springer Nature, 2021, pp. 1382–1390, doi:10.1038/s41567-021-01374-1. short: M. Luciano, S. Xue, W.H. De Vos, L. Redondo-Morata, M. Surin, F. Lafont, E.B. Hannezo, S. Gabriele, Nature Physics 17 (2021) 1382–1390. date_created: 2021-11-28T23:01:29Z date_published: 2021-11-18T00:00:00Z date_updated: 2023-10-16T06:31:54Z day: '18' ddc: - '530' department: - _id: EdHa doi: 10.1038/s41567-021-01374-1 ec_funded: 1 external_id: isi: - '000720204300004' file: - access_level: open_access checksum: 5d6d76750a71d7cb632bb15417c38ef7 content_type: application/pdf creator: channezo date_created: 2023-10-11T09:31:43Z date_updated: 2023-10-11T09:31:43Z file_id: '14420' file_name: 50145_4_merged_1630498627.pdf file_size: 40285498 relation: main_file success: 1 file_date_updated: 2023-10-11T09:31:43Z has_accepted_license: '1' intvolume: ' 17' isi: 1 issue: '12' language: - iso: eng month: '11' oa: 1 oa_version: Submitted Version page: 1382–1390 project: - _id: 05943252-7A3F-11EA-A408-12923DDC885E call_identifier: H2020 grant_number: '851288' name: Design Principles of Branching Morphogenesis - _id: 268294B6-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: P31639 name: Active mechano-chemical description of the cell cytoskeleton publication: Nature Physics publication_identifier: eissn: - 1745-2481 issn: - 1745-2473 publication_status: published publisher: Springer Nature quality_controlled: '1' related_material: link: - description: News on IST Webpage relation: press_release url: https://ist.ac.at/en/news/how-cells-feel-curvature/ scopus_import: '1' status: public title: Cell monolayers sense curvature by exploiting active mechanics and nuclear mechanoadaptation type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 17 year: '2021' ... --- _id: '9298' abstract: - lang: eng text: 'In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field. ' acknowledgement: This work was supported by the National Institute of General Medical Sciences [GM131919]. Due to space and other limitations, it is not possible to include all other sources of financial support. article_processing_charge: No article_type: review author: - first_name: Daniel J. full_name: Klionsky, Daniel J. last_name: Klionsky - first_name: Amal Kamal full_name: Abdel-Aziz, Amal Kamal last_name: Abdel-Aziz - first_name: Sara full_name: Abdelfatah, Sara last_name: Abdelfatah - first_name: Mahmoud full_name: Abdellatif, Mahmoud last_name: Abdellatif - first_name: Asghar full_name: Abdoli, Asghar last_name: Abdoli - first_name: Steffen full_name: Abel, Steffen last_name: Abel - first_name: Hagai full_name: Abeliovich, Hagai last_name: Abeliovich - first_name: Marie H. full_name: Abildgaard, Marie H. last_name: Abildgaard - first_name: Yakubu Princely full_name: Abudu, Yakubu Princely last_name: Abudu - first_name: Abraham full_name: Acevedo-Arozena, Abraham last_name: Acevedo-Arozena - first_name: Iannis E. full_name: Adamopoulos, Iannis E. last_name: Adamopoulos - first_name: Khosrow full_name: Adeli, Khosrow last_name: Adeli - first_name: Timon E. full_name: Adolph, Timon E. last_name: Adolph - first_name: Annagrazia full_name: Adornetto, Annagrazia last_name: Adornetto - first_name: Elma full_name: Aflaki, Elma last_name: Aflaki - first_name: Galila full_name: Agam, Galila last_name: Agam - first_name: Anupam full_name: Agarwal, Anupam last_name: Agarwal - first_name: Bharat B. full_name: Aggarwal, Bharat B. last_name: Aggarwal - first_name: Maria full_name: Agnello, Maria last_name: Agnello - first_name: Patrizia full_name: Agostinis, Patrizia last_name: Agostinis - first_name: Javed N. full_name: Agrewala, Javed N. last_name: Agrewala - first_name: Alexander full_name: Agrotis, Alexander last_name: Agrotis - first_name: Patricia V. full_name: Aguilar, Patricia V. last_name: Aguilar - first_name: S. 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first_name: Cosima T. full_name: Baldari, Cosima T. last_name: Baldari - first_name: Walter full_name: Balduini, Walter last_name: Balduini - first_name: Andrea full_name: Ballabio, Andrea last_name: Ballabio - first_name: Maria full_name: Ballester, Maria last_name: Ballester - first_name: Salma full_name: Balazadeh, Salma last_name: Balazadeh - first_name: Rena full_name: Balzan, Rena last_name: Balzan - first_name: Rina full_name: Bandopadhyay, Rina last_name: Bandopadhyay - first_name: Sreeparna full_name: Banerjee, Sreeparna last_name: Banerjee - first_name: Sulagna full_name: Banerjee, Sulagna last_name: Banerjee - first_name: Ágnes full_name: Bánréti, Ágnes last_name: Bánréti - first_name: Yan full_name: Bao, Yan last_name: Bao - first_name: Mauricio S. full_name: Baptista, Mauricio S. last_name: Baptista - first_name: Alessandra full_name: Baracca, Alessandra last_name: Baracca - first_name: Cristiana full_name: Barbati, Cristiana last_name: Barbati - first_name: Ariadna full_name: Bargiela, Ariadna last_name: Bargiela - 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first_name: Paolo full_name: Bonaldo, Paolo last_name: Bonaldo - first_name: Srinivasa Reddy full_name: Bonam, Srinivasa Reddy last_name: Bonam - first_name: Laura full_name: Bonfili, Laura last_name: Bonfili - first_name: Juan S. full_name: Bonifacino, Juan S. last_name: Bonifacino - first_name: Brian A. full_name: Boone, Brian A. last_name: Boone - first_name: Martin D. full_name: Bootman, Martin D. last_name: Bootman - first_name: Matteo full_name: Bordi, Matteo last_name: Bordi - first_name: Christoph full_name: Borner, Christoph last_name: Borner - first_name: Beat C. full_name: Bornhauser, Beat C. last_name: Bornhauser - first_name: Gautam full_name: Borthakur, Gautam last_name: Borthakur - first_name: Jürgen full_name: Bosch, Jürgen last_name: Bosch - first_name: Santanu full_name: Bose, Santanu last_name: Bose - first_name: Luis M. full_name: Botana, Luis M. last_name: Botana - first_name: Juan full_name: Botas, Juan last_name: Botas - first_name: Chantal M. full_name: Boulanger, Chantal M. last_name: Boulanger - first_name: Michael E. full_name: Boulton, Michael E. last_name: Boulton - first_name: Mathieu full_name: Bourdenx, Mathieu last_name: Bourdenx - first_name: Benjamin full_name: Bourgeois, Benjamin last_name: Bourgeois - first_name: Nollaig M. full_name: Bourke, Nollaig M. last_name: Bourke - first_name: Guilhem full_name: Bousquet, Guilhem last_name: Bousquet - first_name: Patricia full_name: Boya, Patricia last_name: Boya - first_name: Peter V. full_name: Bozhkov, Peter V. last_name: Bozhkov - first_name: Luiz H.M. full_name: Bozi, Luiz H.M. last_name: Bozi - first_name: Tolga O. full_name: Bozkurt, Tolga O. last_name: Bozkurt - first_name: Doug E. full_name: Brackney, Doug E. last_name: Brackney - first_name: Christian H. full_name: Brandts, Christian H. last_name: Brandts - first_name: Ralf J. full_name: Braun, Ralf J. last_name: Braun - first_name: Gerhard H. full_name: Braus, Gerhard H. last_name: Braus - first_name: Roberto full_name: Bravo-Sagua, Roberto last_name: Bravo-Sagua - first_name: José M. full_name: Bravo-San Pedro, José M. last_name: Bravo-San Pedro - first_name: Patrick full_name: Brest, Patrick last_name: Brest - first_name: Marie Agnès full_name: Bringer, Marie Agnès last_name: Bringer - first_name: Alfredo full_name: Briones-Herrera, Alfredo last_name: Briones-Herrera - first_name: V. Courtney full_name: Broaddus, V. 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Ross full_name: Buchan, J. Ross last_name: Buchan - first_name: Erin M. full_name: Buckingham, Erin M. last_name: Buckingham - first_name: Hikmet full_name: Budak, Hikmet last_name: Budak - first_name: Mauricio full_name: Budini, Mauricio last_name: Budini - first_name: Geert full_name: Bultynck, Geert last_name: Bultynck - first_name: Florin full_name: Burada, Florin last_name: Burada - first_name: Joseph R. full_name: Burgoyne, Joseph R. last_name: Burgoyne - first_name: M. Isabel full_name: Burón, M. Isabel last_name: Burón - first_name: Victor full_name: Bustos, Victor last_name: Bustos - first_name: Sabrina full_name: Büttner, Sabrina last_name: Büttner - first_name: Elena full_name: Butturini, Elena last_name: Butturini - first_name: Aaron full_name: Byrd, Aaron last_name: Byrd - first_name: Isabel full_name: Cabas, Isabel last_name: Cabas - first_name: Sandra full_name: Cabrera-Benitez, Sandra last_name: Cabrera-Benitez - first_name: Ken full_name: Cadwell, Ken last_name: Cadwell - first_name: Jingjing full_name: Cai, Jingjing last_name: Cai - first_name: Lu full_name: Cai, Lu last_name: Cai - first_name: Qian full_name: Cai, Qian last_name: Cai - first_name: Montserrat full_name: Cairó, Montserrat last_name: Cairó - first_name: Jose A. full_name: Calbet, Jose A. last_name: Calbet - first_name: Guy A. full_name: Caldwell, Guy A. last_name: Caldwell - first_name: Kim A. full_name: Caldwell, Kim A. last_name: Caldwell - first_name: Jarrod A. full_name: Call, Jarrod A. last_name: Call - first_name: Riccardo full_name: Calvani, Riccardo last_name: Calvani - first_name: Ana C. full_name: Calvo, Ana C. last_name: Calvo - first_name: Miguel full_name: Calvo-Rubio Barrera, Miguel last_name: Calvo-Rubio Barrera - first_name: Niels O.S. full_name: Camara, Niels O.S. last_name: Camara - first_name: Jacques H. full_name: Camonis, Jacques H. last_name: Camonis - first_name: Nadine full_name: Camougrand, Nadine last_name: Camougrand - first_name: Michelangelo full_name: Campanella, Michelangelo last_name: Campanella - first_name: Edward M. full_name: Campbell, Edward M. last_name: Campbell - first_name: François Xavier full_name: Campbell-Valois, François Xavier last_name: Campbell-Valois - first_name: Silvia full_name: Campello, Silvia last_name: Campello - first_name: Ilaria full_name: Campesi, Ilaria last_name: Campesi - first_name: Juliane C. full_name: Campos, Juliane C. last_name: Campos - first_name: Olivier full_name: Camuzard, Olivier last_name: Camuzard - first_name: Jorge full_name: Cancino, Jorge last_name: Cancino - first_name: Danilo full_name: Candido De Almeida, Danilo last_name: Candido De Almeida - first_name: Laura full_name: Canesi, Laura last_name: Canesi - first_name: Isabella full_name: Caniggia, Isabella last_name: Caniggia - first_name: Barbara full_name: Canonico, Barbara last_name: Canonico - first_name: Carles full_name: Cantí, Carles last_name: Cantí - first_name: Bin full_name: Cao, Bin last_name: Cao - first_name: Michele full_name: Caraglia, Michele last_name: Caraglia - first_name: Beatriz full_name: Caramés, Beatriz last_name: Caramés - first_name: Evie H. full_name: Carchman, Evie H. last_name: Carchman - first_name: Elena full_name: Cardenal-Muñoz, Elena last_name: Cardenal-Muñoz - first_name: Cesar full_name: Cardenas, Cesar last_name: Cardenas - first_name: Luis full_name: Cardenas, Luis last_name: Cardenas - first_name: Sandra M. full_name: Cardoso, Sandra M. last_name: Cardoso - first_name: Jennifer S. full_name: Carew, Jennifer S. last_name: Carew - first_name: Georges F. full_name: Carle, Georges F. last_name: Carle - first_name: Gillian full_name: Carleton, Gillian last_name: Carleton - first_name: Silvia full_name: Carloni, Silvia last_name: Carloni - first_name: Didac full_name: Carmona-Gutierrez, Didac last_name: Carmona-Gutierrez - first_name: Leticia A. full_name: Carneiro, Leticia A. last_name: Carneiro - first_name: Oliana full_name: Carnevali, Oliana last_name: Carnevali - first_name: Julian M. full_name: Carosi, Julian M. last_name: Carosi - first_name: Serena full_name: Carra, Serena last_name: Carra - first_name: Alice full_name: Carrier, Alice last_name: Carrier - first_name: Lucie full_name: Carrier, Lucie last_name: Carrier - first_name: Bernadette full_name: Carroll, Bernadette last_name: Carroll - first_name: A. 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Brent last_name: Carter - first_name: Andreia Neves full_name: Carvalho, Andreia Neves last_name: Carvalho - first_name: Magali full_name: Casanova, Magali last_name: Casanova - first_name: Caty full_name: Casas, Caty last_name: Casas - first_name: Josefina full_name: Casas, Josefina last_name: Casas - first_name: Chiara full_name: Cassioli, Chiara last_name: Cassioli - first_name: Eliseo F. full_name: Castillo, Eliseo F. last_name: Castillo - first_name: Karen full_name: Castillo, Karen last_name: Castillo - first_name: Sonia full_name: Castillo-Lluva, Sonia last_name: Castillo-Lluva - first_name: Francesca full_name: Castoldi, Francesca last_name: Castoldi - first_name: Marco full_name: Castori, Marco last_name: Castori - first_name: Ariel F. full_name: Castro, Ariel F. last_name: Castro - first_name: Margarida full_name: Castro-Caldas, Margarida last_name: Castro-Caldas - first_name: Javier full_name: Castro-Hernandez, Javier last_name: Castro-Hernandez - first_name: Susana full_name: Castro-Obregon, Susana last_name: Castro-Obregon - first_name: Sergio D. full_name: Catz, Sergio D. last_name: Catz - first_name: Claudia full_name: Cavadas, Claudia last_name: Cavadas - first_name: Federica full_name: Cavaliere, Federica last_name: Cavaliere - first_name: Gabriella full_name: Cavallini, Gabriella last_name: Cavallini - first_name: Maria full_name: Cavinato, Maria last_name: Cavinato - first_name: Maria L. full_name: Cayuela, Maria L. last_name: Cayuela - first_name: Paula full_name: Cebollada Rica, Paula last_name: Cebollada Rica - first_name: Valentina full_name: Cecarini, Valentina last_name: Cecarini - first_name: Francesco full_name: Cecconi, Francesco last_name: Cecconi - first_name: Marzanna full_name: Cechowska-Pasko, Marzanna last_name: Cechowska-Pasko - first_name: Simone full_name: Cenci, Simone last_name: Cenci - first_name: Victòria full_name: Ceperuelo-Mallafré, Victòria last_name: Ceperuelo-Mallafré - first_name: João J. full_name: Cerqueira, João J. last_name: Cerqueira - first_name: Janete M. full_name: Cerutti, Janete M. last_name: Cerutti - first_name: Davide full_name: Cervia, Davide last_name: Cervia - first_name: Vildan Bozok full_name: Cetintas, Vildan Bozok last_name: Cetintas - first_name: Silvia full_name: Cetrullo, Silvia last_name: Cetrullo - first_name: Han Jung full_name: Chae, Han Jung last_name: Chae - first_name: Andrei S. full_name: Chagin, Andrei S. last_name: Chagin - first_name: Chee Yin full_name: Chai, Chee Yin last_name: Chai - first_name: Gopal full_name: Chakrabarti, Gopal last_name: Chakrabarti - first_name: Oishee full_name: Chakrabarti, Oishee last_name: Chakrabarti - first_name: Tapas full_name: Chakraborty, Tapas last_name: Chakraborty - first_name: Trinad full_name: Chakraborty, Trinad last_name: Chakraborty - first_name: Mounia full_name: Chami, Mounia last_name: Chami - first_name: Georgios full_name: Chamilos, Georgios last_name: Chamilos - first_name: David W. full_name: Chan, David W. last_name: Chan - first_name: Edmond Y.W. full_name: Chan, Edmond Y.W. last_name: Chan - first_name: Edward D. full_name: Chan, Edward D. last_name: Chan - first_name: H. 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first_name: Santosh full_name: Chauhan, Santosh last_name: Chauhan - first_name: Edward full_name: Chaum, Edward last_name: Chaum - first_name: Frédéric full_name: Checler, Frédéric last_name: Checler - first_name: Michael E. full_name: Cheetham, Michael E. last_name: Cheetham - first_name: Chang Shi full_name: Chen, Chang Shi last_name: Chen - first_name: Guang Chao full_name: Chen, Guang Chao last_name: Chen - first_name: Jian Fu full_name: Chen, Jian Fu last_name: Chen - first_name: Liam L. full_name: Chen, Liam L. last_name: Chen - first_name: Leilei full_name: Chen, Leilei last_name: Chen - first_name: Lin full_name: Chen, Lin last_name: Chen - first_name: Mingliang full_name: Chen, Mingliang last_name: Chen - first_name: Mu Kuan full_name: Chen, Mu Kuan last_name: Chen - first_name: Ning full_name: Chen, Ning last_name: Chen - first_name: Quan full_name: Chen, Quan last_name: Chen - first_name: Ruey Hwa full_name: Chen, Ruey Hwa last_name: Chen - first_name: Shi full_name: Chen, Shi last_name: Chen - first_name: Wei full_name: Chen, Wei last_name: Chen - first_name: Weiqiang full_name: Chen, Weiqiang last_name: Chen - first_name: Xin Ming full_name: Chen, Xin Ming last_name: Chen - first_name: Xiong Wen full_name: Chen, Xiong Wen last_name: Chen - first_name: Xu full_name: Chen, Xu id: 4E5ADCAA-F248-11E8-B48F-1D18A9856A87 last_name: Chen - first_name: Yan full_name: Chen, Yan last_name: Chen - first_name: Ye Guang full_name: Chen, Ye Guang last_name: Chen - first_name: Yingyu full_name: Chen, Yingyu last_name: Chen - first_name: Yongqiang full_name: Chen, Yongqiang last_name: Chen - first_name: Yu Jen full_name: Chen, Yu Jen last_name: Chen - first_name: Yue Qin full_name: Chen, Yue Qin last_name: Chen - first_name: Zhefan Stephen full_name: Chen, Zhefan Stephen last_name: Chen - first_name: Zhi full_name: Chen, Zhi last_name: Chen - first_name: Zhi Hua full_name: Chen, Zhi Hua last_name: Chen - first_name: Zhijian J. full_name: Chen, Zhijian J. last_name: Chen - first_name: Zhixiang full_name: Chen, Zhixiang last_name: Chen - first_name: Hanhua full_name: Cheng, Hanhua last_name: Cheng - first_name: Jun full_name: Cheng, Jun last_name: Cheng - first_name: Shi Yuan full_name: Cheng, Shi Yuan last_name: Cheng - first_name: Wei full_name: Cheng, Wei last_name: Cheng - first_name: Xiaodong full_name: Cheng, Xiaodong last_name: Cheng - first_name: Xiu Tang full_name: Cheng, Xiu Tang last_name: Cheng - first_name: Yiyun full_name: Cheng, Yiyun last_name: Cheng - first_name: Zhiyong full_name: Cheng, Zhiyong last_name: Cheng - first_name: Zhong full_name: Chen, Zhong last_name: Chen - first_name: Heesun full_name: Cheong, Heesun last_name: Cheong - first_name: Jit Kong full_name: Cheong, Jit Kong last_name: Cheong - first_name: Boris V. full_name: Chernyak, Boris V. last_name: Chernyak - first_name: Sara full_name: Cherry, Sara last_name: Cherry - first_name: Chi Fai Randy full_name: Cheung, Chi Fai Randy last_name: Cheung - first_name: Chun Hei Antonio full_name: Cheung, Chun Hei Antonio last_name: Cheung - first_name: King Ho full_name: Cheung, King Ho last_name: Cheung - first_name: Eric full_name: Chevet, Eric last_name: Chevet - first_name: Richard J. full_name: Chi, Richard J. last_name: Chi - first_name: Alan Kwok Shing full_name: Chiang, Alan Kwok Shing last_name: Chiang - first_name: Ferdinando full_name: Chiaradonna, Ferdinando last_name: Chiaradonna - first_name: Roberto full_name: Chiarelli, Roberto last_name: Chiarelli - first_name: Mario full_name: Chiariello, Mario last_name: Chiariello - first_name: Nathalia full_name: Chica, Nathalia last_name: Chica - first_name: Susanna full_name: Chiocca, Susanna last_name: Chiocca - first_name: Mario full_name: Chiong, Mario last_name: Chiong - first_name: Shih Hwa full_name: Chiou, Shih Hwa last_name: Chiou - first_name: Abhilash I. full_name: Chiramel, Abhilash I. last_name: Chiramel - first_name: Valerio full_name: Chiurchiù, Valerio last_name: Chiurchiù - first_name: Dong Hyung full_name: Cho, Dong Hyung last_name: Cho - first_name: Seong Kyu full_name: Choe, Seong Kyu last_name: Choe - first_name: Augustine M.K. full_name: Choi, Augustine M.K. last_name: Choi - 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first_name: Grant full_name: Dewson, Grant last_name: Dewson - first_name: Mahendiran full_name: Dharmasivam, Mahendiran last_name: Dharmasivam - first_name: Rohan full_name: Dhiman, Rohan last_name: Dhiman - first_name: Diego full_name: Di Bernardo, Diego last_name: Di Bernardo - first_name: Manlio full_name: Di Cristina, Manlio last_name: Di Cristina - first_name: Fabio full_name: Di Domenico, Fabio last_name: Di Domenico - first_name: Pietro full_name: Di Fazio, Pietro last_name: Di Fazio - first_name: Alessio full_name: Di Fonzo, Alessio last_name: Di Fonzo - first_name: Giovanni full_name: Di Guardo, Giovanni last_name: Di Guardo - first_name: Gianni M. full_name: Di Guglielmo, Gianni M. last_name: Di Guglielmo - first_name: Luca full_name: Di Leo, Luca last_name: Di Leo - first_name: Chiara full_name: Di Malta, Chiara last_name: Di Malta - first_name: Alessia full_name: Di Nardo, Alessia last_name: Di Nardo - first_name: Martina full_name: Di Rienzo, Martina last_name: Di Rienzo - first_name: Federica full_name: Di Sano, Federica last_name: Di Sano - first_name: George full_name: Diallinas, George last_name: Diallinas - first_name: Jiajie full_name: Diao, Jiajie last_name: Diao - first_name: Guillermo full_name: Diaz-Araya, Guillermo last_name: Diaz-Araya - first_name: Inés full_name: Díaz-Laviada, Inés last_name: Díaz-Laviada - first_name: Jared M. full_name: Dickinson, Jared M. last_name: Dickinson - first_name: Marc full_name: Diederich, Marc last_name: Diederich - first_name: Mélanie full_name: Dieudé, Mélanie last_name: Dieudé - first_name: Ivan full_name: Dikic, Ivan last_name: Dikic - first_name: Shiping full_name: Ding, Shiping last_name: Ding - first_name: Wen Xing full_name: Ding, Wen Xing last_name: Ding - first_name: Luciana full_name: Dini, Luciana last_name: Dini - first_name: Jelena full_name: Dinić, Jelena last_name: Dinić - first_name: Miroslav full_name: Dinic, Miroslav last_name: Dinic - first_name: Albena T. full_name: Dinkova-Kostova, Albena T. last_name: Dinkova-Kostova - 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first_name: Maria Noé full_name: Garcia, Maria Noé last_name: Garcia - first_name: Verónica E. full_name: Garcia, Verónica E. last_name: Garcia - first_name: Francisco full_name: García-Del Portillo, Francisco last_name: García-Del Portillo - first_name: Vega full_name: Garcia-Escudero, Vega last_name: Garcia-Escudero - first_name: Aracely full_name: Garcia-Garcia, Aracely last_name: Garcia-Garcia - first_name: Marina full_name: Garcia-Macia, Marina last_name: Garcia-Macia - first_name: Diana full_name: García-Moreno, Diana last_name: García-Moreno - first_name: Carmen full_name: Garcia-Ruiz, Carmen last_name: Garcia-Ruiz - first_name: Patricia full_name: García-Sanz, Patricia last_name: García-Sanz - first_name: Abhishek D. full_name: Garg, Abhishek D. last_name: Garg - first_name: Ricardo full_name: Gargini, Ricardo last_name: Gargini - first_name: Tina full_name: Garofalo, Tina last_name: Garofalo - first_name: Robert F. full_name: Garry, Robert F. last_name: Garry - first_name: Nils C. full_name: Gassen, Nils C. last_name: Gassen - 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first_name: Manosij full_name: Ghosh, Manosij last_name: Ghosh - first_name: Georgios full_name: Giamas, Georgios last_name: Giamas - first_name: Claudia full_name: Giampietri, Claudia last_name: Giampietri - first_name: Alexandra full_name: Giatromanolaki, Alexandra last_name: Giatromanolaki - first_name: Gary E. full_name: Gibson, Gary E. last_name: Gibson - first_name: Spencer B. full_name: Gibson, Spencer B. last_name: Gibson - first_name: Vanessa full_name: Ginet, Vanessa last_name: Ginet - first_name: Edward full_name: Giniger, Edward last_name: Giniger - first_name: Carlotta full_name: Giorgi, Carlotta last_name: Giorgi - first_name: Henrique full_name: Girao, Henrique last_name: Girao - first_name: Stephen E. full_name: Girardin, Stephen E. last_name: Girardin - first_name: Mridhula full_name: Giridharan, Mridhula last_name: Giridharan - first_name: Sandy full_name: Giuliano, Sandy last_name: Giuliano - first_name: Cecilia full_name: Giulivi, Cecilia last_name: Giulivi - first_name: Sylvie full_name: Giuriato, Sylvie last_name: Giuriato - first_name: Julien full_name: Giustiniani, Julien last_name: Giustiniani - first_name: Alexander full_name: Gluschko, Alexander last_name: Gluschko - first_name: Veit full_name: Goder, Veit last_name: Goder - first_name: Alexander full_name: Goginashvili, Alexander last_name: Goginashvili - first_name: Jakub full_name: Golab, Jakub last_name: Golab - first_name: David C. full_name: Goldstone, David C. last_name: Goldstone - first_name: Anna full_name: Golebiewska, Anna last_name: Golebiewska - first_name: Luciana R. full_name: Gomes, Luciana R. last_name: Gomes - first_name: Rodrigo full_name: Gomez, Rodrigo last_name: Gomez - first_name: Rubén full_name: Gómez-Sánchez, Rubén last_name: Gómez-Sánchez - first_name: Maria Catalina full_name: Gomez-Puerto, Maria Catalina last_name: Gomez-Puerto - first_name: Raquel full_name: Gomez-Sintes, Raquel last_name: Gomez-Sintes - first_name: Qingqiu full_name: Gong, Qingqiu last_name: Gong - first_name: Felix M. full_name: Goni, Felix M. last_name: Goni - first_name: Javier full_name: González-Gallego, Javier last_name: González-Gallego - first_name: Tomas full_name: Gonzalez-Hernandez, Tomas last_name: Gonzalez-Hernandez - first_name: Rosa A. full_name: Gonzalez-Polo, Rosa A. last_name: Gonzalez-Polo - first_name: Jose A. full_name: Gonzalez-Reyes, Jose A. last_name: Gonzalez-Reyes - first_name: Patricia full_name: González-Rodríguez, Patricia last_name: González-Rodríguez - first_name: Ing Swie full_name: Goping, Ing Swie last_name: Goping - first_name: Marina S. full_name: Gorbatyuk, Marina S. last_name: Gorbatyuk - first_name: Nikolai V. full_name: Gorbunov, Nikolai V. last_name: Gorbunov - first_name: Kıvanç full_name: Görgülü, Kıvanç last_name: Görgülü - first_name: Roxana M. full_name: Gorojod, Roxana M. last_name: Gorojod - first_name: Sharon M. full_name: Gorski, Sharon M. last_name: Gorski - first_name: Sandro full_name: Goruppi, Sandro last_name: Goruppi - first_name: Cecilia full_name: Gotor, Cecilia last_name: Gotor - first_name: Roberta A. full_name: Gottlieb, Roberta A. last_name: Gottlieb - first_name: Illana full_name: Gozes, Illana last_name: Gozes - first_name: Devrim full_name: Gozuacik, Devrim last_name: Gozuacik - first_name: Martin full_name: Graef, Martin last_name: Graef - first_name: Markus H. full_name: Gräler, Markus H. last_name: Gräler - first_name: Veronica full_name: Granatiero, Veronica last_name: Granatiero - first_name: Daniel full_name: Grasso, Daniel last_name: Grasso - first_name: Joshua P. full_name: Gray, Joshua P. last_name: Gray - first_name: Douglas R. full_name: Green, Douglas R. last_name: Green - first_name: Alexander full_name: Greenhough, Alexander last_name: Greenhough - first_name: Stephen L. full_name: Gregory, Stephen L. last_name: Gregory - first_name: Edward F. full_name: Griffin, Edward F. last_name: Griffin - first_name: Mark W. full_name: Grinstaff, Mark W. last_name: Grinstaff - first_name: Frederic full_name: Gros, Frederic last_name: Gros - first_name: Charles full_name: Grose, Charles last_name: Grose - first_name: Angelina S. full_name: Gross, Angelina S. last_name: Gross - 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first_name: Anyonya R. full_name: Guntur, Anyonya R. last_name: Guntur - first_name: Chuanyong full_name: Guo, Chuanyong last_name: Guo - first_name: Chun full_name: Guo, Chun last_name: Guo - first_name: Hongqing full_name: Guo, Hongqing last_name: Guo - first_name: Lian Wang full_name: Guo, Lian Wang last_name: Guo - first_name: Ming full_name: Guo, Ming last_name: Guo - first_name: Pawan full_name: Gupta, Pawan last_name: Gupta - first_name: Shashi Kumar full_name: Gupta, Shashi Kumar last_name: Gupta - first_name: Swapnil full_name: Gupta, Swapnil last_name: Gupta - first_name: Veer Bala full_name: Gupta, Veer Bala last_name: Gupta - first_name: Vivek full_name: Gupta, Vivek last_name: Gupta - first_name: Asa B. full_name: Gustafsson, Asa B. last_name: Gustafsson - first_name: David D. full_name: Gutterman, David D. last_name: Gutterman - first_name: Ranjitha full_name: H.B, Ranjitha last_name: H.B - first_name: Annakaisa full_name: Haapasalo, Annakaisa last_name: Haapasalo - first_name: James E. full_name: Haber, James E. last_name: Haber - 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first_name: Richeng full_name: Jiang, Richeng last_name: Jiang - first_name: Teng full_name: Jiang, Teng last_name: Jiang - first_name: Xuejun full_name: Jiang, Xuejun last_name: Jiang - first_name: Yu full_name: Jiang, Yu last_name: Jiang - first_name: Maria full_name: Jimenez-Sanchez, Maria last_name: Jimenez-Sanchez - first_name: Eun Jung full_name: Jin, Eun Jung last_name: Jin - first_name: Fengyan full_name: Jin, Fengyan last_name: Jin - first_name: Hongchuan full_name: Jin, Hongchuan last_name: Jin - first_name: Li full_name: Jin, Li last_name: Jin - first_name: Luqi full_name: Jin, Luqi last_name: Jin - first_name: Meiyan full_name: Jin, Meiyan last_name: Jin - first_name: Si full_name: Jin, Si last_name: Jin - first_name: Eun Kyeong full_name: Jo, Eun Kyeong last_name: Jo - first_name: Carine full_name: Joffre, Carine last_name: Joffre - first_name: Terje full_name: Johansen, Terje last_name: Johansen - first_name: Gail V.W. full_name: Johnson, Gail V.W. last_name: Johnson - first_name: Simon A. full_name: Johnston, Simon A. last_name: Johnston - 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first_name: Johannes full_name: Jungverdorben, Johannes last_name: Jungverdorben - first_name: Steffen full_name: Just, Steffen last_name: Just - first_name: Kai full_name: Kaarniranta, Kai last_name: Kaarniranta - first_name: Allen full_name: Kaasik, Allen last_name: Kaasik - first_name: Tomohiro full_name: Kabuta, Tomohiro last_name: Kabuta - first_name: Daniel full_name: Kaganovich, Daniel last_name: Kaganovich - first_name: Alon full_name: Kahana, Alon last_name: Kahana - first_name: Renate full_name: Kain, Renate last_name: Kain - first_name: Shinjo full_name: Kajimura, Shinjo last_name: Kajimura - first_name: Maria full_name: Kalamvoki, Maria last_name: Kalamvoki - first_name: Manjula full_name: Kalia, Manjula last_name: Kalia - first_name: Danuta S. full_name: Kalinowski, Danuta S. last_name: Kalinowski - first_name: Nina full_name: Kaludercic, Nina last_name: Kaludercic - first_name: Ioanna full_name: Kalvari, Ioanna last_name: Kalvari - first_name: Joanna full_name: Kaminska, Joanna last_name: Kaminska - first_name: Vitaliy O. full_name: Kaminskyy, Vitaliy O. last_name: Kaminskyy - first_name: Hiromitsu full_name: Kanamori, Hiromitsu last_name: Kanamori - first_name: Keizo full_name: Kanasaki, Keizo last_name: Kanasaki - first_name: Chanhee full_name: Kang, Chanhee last_name: Kang - first_name: Rui full_name: Kang, Rui last_name: Kang - first_name: Sang Sun full_name: Kang, Sang Sun last_name: Kang - first_name: Senthilvelrajan full_name: Kaniyappan, Senthilvelrajan last_name: Kaniyappan - first_name: Tomotake full_name: Kanki, Tomotake last_name: Kanki - first_name: Thirumala Devi full_name: Kanneganti, Thirumala Devi last_name: Kanneganti - first_name: Anumantha G. full_name: Kanthasamy, Anumantha G. last_name: Kanthasamy - first_name: Arthi full_name: Kanthasamy, Arthi last_name: Kanthasamy - first_name: Marc full_name: Kantorow, Marc last_name: Kantorow - first_name: Orsolya full_name: Kapuy, Orsolya last_name: Kapuy - first_name: Michalis V. full_name: Karamouzis, Michalis V. last_name: Karamouzis - first_name: Md Razaul full_name: Karim, Md Razaul last_name: Karim - first_name: Parimal full_name: Karmakar, Parimal last_name: Karmakar - first_name: Rajesh G. full_name: Katare, Rajesh G. last_name: Katare - first_name: Masaru full_name: Kato, Masaru last_name: Kato - first_name: Stefan H.E. full_name: Kaufmann, Stefan H.E. last_name: Kaufmann - first_name: Anu full_name: Kauppinen, Anu last_name: Kauppinen - first_name: Gur P. full_name: Kaushal, Gur P. last_name: Kaushal - first_name: Susmita full_name: Kaushik, Susmita last_name: Kaushik - first_name: Kiyoshi full_name: Kawasaki, Kiyoshi last_name: Kawasaki - first_name: Kemal full_name: Kazan, Kemal last_name: Kazan - first_name: Po Yuan full_name: Ke, Po Yuan last_name: Ke - first_name: Damien J. full_name: Keating, Damien J. last_name: Keating - first_name: Ursula full_name: Keber, Ursula last_name: Keber - first_name: John H. full_name: Kehrl, John H. last_name: Kehrl - first_name: Kate E. full_name: Keller, Kate E. last_name: Keller - first_name: Christian W. full_name: Keller, Christian W. last_name: Keller - first_name: Jongsook Kim full_name: Kemper, Jongsook Kim last_name: Kemper - first_name: Candia M. full_name: Kenific, Candia M. last_name: Kenific - first_name: Oliver full_name: Kepp, Oliver last_name: Kepp - first_name: Stephanie full_name: Kermorgant, Stephanie last_name: Kermorgant - first_name: Andreas full_name: Kern, Andreas last_name: Kern - first_name: Robin full_name: Ketteler, Robin last_name: Ketteler - first_name: Tom G. full_name: Keulers, Tom G. last_name: Keulers - first_name: Boris full_name: Khalfin, Boris last_name: Khalfin - first_name: Hany full_name: Khalil, Hany last_name: Khalil - first_name: Bilon full_name: Khambu, Bilon last_name: Khambu - first_name: Shahid Y. full_name: Khan, Shahid Y. last_name: Khan - first_name: Vinoth Kumar Megraj full_name: Khandelwal, Vinoth Kumar Megraj last_name: Khandelwal - first_name: Rekha full_name: Khandia, Rekha last_name: Khandia - first_name: Widuri full_name: Kho, Widuri last_name: Kho - first_name: Noopur V. full_name: Khobrekar, Noopur V. last_name: Khobrekar - first_name: Sataree full_name: Khuansuwan, Sataree last_name: Khuansuwan - first_name: Mukhran full_name: Khundadze, Mukhran last_name: Khundadze - first_name: Samuel A. full_name: Killackey, Samuel A. last_name: Killackey - first_name: Dasol full_name: Kim, Dasol last_name: Kim - first_name: Deok Ryong full_name: Kim, Deok Ryong last_name: Kim - first_name: Do Hyung full_name: Kim, Do Hyung last_name: Kim - first_name: Dong Eun full_name: Kim, Dong Eun last_name: Kim - first_name: Eun Young full_name: Kim, Eun Young last_name: Kim - first_name: Eun Kyoung full_name: Kim, Eun Kyoung last_name: Kim - first_name: Hak Rim full_name: Kim, Hak Rim last_name: Kim - first_name: Hee Sik full_name: Kim, Hee Sik last_name: Kim - first_name: Unknown full_name: Hyung-Ryong Kim, Unknown last_name: Hyung-Ryong Kim - first_name: Jeong Hun full_name: Kim, Jeong Hun last_name: Kim - first_name: Jin Kyung full_name: Kim, Jin Kyung last_name: Kim - first_name: Jin Hoi full_name: Kim, Jin Hoi last_name: Kim - first_name: Joungmok full_name: Kim, Joungmok last_name: Kim - first_name: Ju Hwan full_name: Kim, Ju Hwan last_name: Kim - first_name: Keun Il full_name: Kim, Keun Il last_name: Kim - first_name: Peter K. full_name: Kim, Peter K. last_name: Kim - first_name: Seong Jun full_name: Kim, Seong Jun last_name: Kim - first_name: Scot R. full_name: Kimball, Scot R. last_name: Kimball - first_name: Adi full_name: Kimchi, Adi last_name: Kimchi - first_name: Alec C. full_name: Kimmelman, Alec C. last_name: Kimmelman - first_name: Tomonori full_name: Kimura, Tomonori last_name: Kimura - first_name: Matthew A. full_name: King, Matthew A. last_name: King - first_name: Kerri J. full_name: Kinghorn, Kerri J. last_name: Kinghorn - first_name: Conan G. full_name: Kinsey, Conan G. last_name: Kinsey - first_name: Vladimir full_name: Kirkin, Vladimir last_name: Kirkin - first_name: Lorrie A. full_name: Kirshenbaum, Lorrie A. last_name: Kirshenbaum - first_name: Sergey L. full_name: Kiselev, Sergey L. last_name: Kiselev - first_name: Shuji full_name: Kishi, Shuji last_name: Kishi - first_name: Katsuhiko full_name: Kitamoto, Katsuhiko last_name: Kitamoto - first_name: Yasushi full_name: Kitaoka, Yasushi last_name: Kitaoka - first_name: Kaio full_name: Kitazato, Kaio last_name: Kitazato - first_name: Richard N. full_name: Kitsis, Richard N. last_name: Kitsis - first_name: Josef T. full_name: Kittler, Josef T. last_name: Kittler - first_name: Ole full_name: Kjaerulff, Ole last_name: Kjaerulff - first_name: Peter S. full_name: Klein, Peter S. last_name: Klein - first_name: Thomas full_name: Klopstock, Thomas last_name: Klopstock - first_name: Jochen full_name: Klucken, Jochen last_name: Klucken - first_name: Helene full_name: Knævelsrud, Helene last_name: Knævelsrud - first_name: Roland L. full_name: Knorr, Roland L. last_name: Knorr - first_name: Ben C.B. full_name: Ko, Ben C.B. last_name: Ko - first_name: Fred full_name: Ko, Fred last_name: Ko - first_name: Jiunn Liang full_name: Ko, Jiunn Liang last_name: Ko - first_name: Hotaka full_name: Kobayashi, Hotaka last_name: Kobayashi - first_name: Satoru full_name: Kobayashi, Satoru last_name: Kobayashi - first_name: Ina full_name: Koch, Ina last_name: Koch - first_name: Jan C. full_name: Koch, Jan C. last_name: Koch - first_name: Ulrich full_name: Koenig, Ulrich last_name: Koenig - first_name: Donat full_name: Kögel, Donat last_name: Kögel - first_name: Young Ho full_name: Koh, Young Ho last_name: Koh - first_name: Masato full_name: Koike, Masato last_name: Koike - first_name: Sepp D. full_name: Kohlwein, Sepp D. last_name: Kohlwein - first_name: Nur M. full_name: Kocaturk, Nur M. last_name: Kocaturk - first_name: Masaaki full_name: Komatsu, Masaaki last_name: Komatsu - first_name: Jeannette full_name: König, Jeannette last_name: König - first_name: Toru full_name: Kono, Toru last_name: Kono - first_name: Benjamin T. full_name: Kopp, Benjamin T. last_name: Kopp - first_name: Tamas full_name: Korcsmaros, Tamas last_name: Korcsmaros - first_name: Gözde full_name: Korkmaz, Gözde last_name: Korkmaz - first_name: Viktor I. full_name: Korolchuk, Viktor I. last_name: Korolchuk - first_name: Mónica Suárez full_name: Korsnes, Mónica Suárez last_name: Korsnes - first_name: Ali full_name: Koskela, Ali last_name: Koskela - first_name: Janaiah full_name: Kota, Janaiah last_name: Kota - first_name: Yaichiro full_name: Kotake, Yaichiro last_name: Kotake - first_name: Monica L. full_name: Kotler, Monica L. last_name: Kotler - first_name: Yanjun full_name: Kou, Yanjun last_name: Kou - first_name: Michael I. full_name: Koukourakis, Michael I. last_name: Koukourakis - first_name: Evangelos full_name: Koustas, Evangelos last_name: Koustas - first_name: Attila L. full_name: Kovacs, Attila L. last_name: Kovacs - first_name: Tibor full_name: Kovács, Tibor last_name: Kovács - first_name: Daisuke full_name: Koya, Daisuke last_name: Koya - first_name: Tomohiro full_name: Kozako, Tomohiro last_name: Kozako - first_name: Claudine full_name: Kraft, Claudine last_name: Kraft - first_name: Dimitri full_name: Krainc, Dimitri last_name: Krainc - first_name: Helmut full_name: Krämer, Helmut last_name: Krämer - first_name: Anna D. full_name: Krasnodembskaya, Anna D. last_name: Krasnodembskaya - first_name: Carole full_name: Kretz-Remy, Carole last_name: Kretz-Remy - first_name: Guido full_name: Kroemer, Guido last_name: Kroemer - first_name: Nicholas T. full_name: Ktistakis, Nicholas T. last_name: Ktistakis - first_name: Kazuyuki full_name: Kuchitsu, Kazuyuki last_name: Kuchitsu - first_name: Sabine full_name: Kuenen, Sabine last_name: Kuenen - first_name: Lars full_name: Kuerschner, Lars last_name: Kuerschner - first_name: Thomas full_name: Kukar, Thomas last_name: Kukar - first_name: Ajay full_name: Kumar, Ajay last_name: Kumar - first_name: Ashok full_name: Kumar, Ashok last_name: Kumar - first_name: Deepak full_name: Kumar, Deepak last_name: Kumar - first_name: Dhiraj full_name: Kumar, Dhiraj last_name: Kumar - first_name: Sharad full_name: Kumar, Sharad last_name: Kumar - first_name: Shinji full_name: Kume, Shinji last_name: Kume - first_name: Caroline full_name: Kumsta, Caroline last_name: Kumsta - first_name: Chanakya N. full_name: Kundu, Chanakya N. last_name: Kundu - first_name: Mondira full_name: Kundu, Mondira last_name: Kundu - first_name: Ajaikumar B. full_name: Kunnumakkara, Ajaikumar B. last_name: Kunnumakkara - first_name: Lukasz full_name: Kurgan, Lukasz last_name: Kurgan - first_name: Tatiana G. full_name: Kutateladze, Tatiana G. last_name: Kutateladze - first_name: Ozlem full_name: Kutlu, Ozlem last_name: Kutlu - first_name: Seong Ae full_name: Kwak, Seong Ae last_name: Kwak - first_name: Ho Jeong full_name: Kwon, Ho Jeong last_name: Kwon - first_name: Taeg Kyu full_name: Kwon, Taeg Kyu last_name: Kwon - first_name: Yong Tae full_name: Kwon, Yong Tae last_name: Kwon - first_name: Irene full_name: Kyrmizi, Irene last_name: Kyrmizi - first_name: Albert full_name: La Spada, Albert last_name: La Spada - first_name: Patrick full_name: Labonté, Patrick last_name: Labonté - first_name: Sylvain full_name: Ladoire, Sylvain last_name: Ladoire - first_name: Ilaria full_name: Laface, Ilaria last_name: Laface - first_name: Frank full_name: Lafont, Frank last_name: Lafont - first_name: Diane C. full_name: Lagace, Diane C. last_name: Lagace - first_name: Vikramjit full_name: Lahiri, Vikramjit last_name: Lahiri - first_name: Zhibing full_name: Lai, Zhibing last_name: Lai - first_name: Angela S. full_name: Laird, Angela S. last_name: Laird - first_name: Aparna full_name: Lakkaraju, Aparna last_name: Lakkaraju - first_name: Trond full_name: Lamark, Trond last_name: Lamark - first_name: Sheng Hui full_name: Lan, Sheng Hui last_name: Lan - first_name: Ane full_name: Landajuela, Ane last_name: Landajuela - first_name: Darius J.R. full_name: Lane, Darius J.R. last_name: Lane - first_name: Jon D. full_name: Lane, Jon D. last_name: Lane - first_name: Charles H. full_name: Lang, Charles H. last_name: Lang - first_name: Carsten full_name: Lange, Carsten last_name: Lange - first_name: Ülo full_name: Langel, Ülo last_name: Langel - first_name: Rupert full_name: Langer, Rupert last_name: Langer - first_name: Pierre full_name: Lapaquette, Pierre last_name: Lapaquette - first_name: Jocelyn full_name: Laporte, Jocelyn last_name: Laporte - first_name: Nicholas F. full_name: Larusso, Nicholas F. last_name: Larusso - first_name: Isabel full_name: Lastres-Becker, Isabel last_name: Lastres-Becker - first_name: Wilson Chun Yu full_name: Lau, Wilson Chun Yu last_name: Lau - first_name: Gordon W. full_name: Laurie, Gordon W. last_name: Laurie - first_name: Sergio full_name: Lavandero, Sergio last_name: Lavandero - first_name: Betty Yuen Kwan full_name: Law, Betty Yuen Kwan last_name: Law - first_name: Helen Ka Wai full_name: Law, Helen Ka Wai last_name: Law - first_name: Rob full_name: Layfield, Rob last_name: Layfield - first_name: Weidong full_name: Le, Weidong last_name: Le - first_name: Herve full_name: Le Stunff, Herve last_name: Le Stunff - first_name: Alexandre Y. full_name: Leary, Alexandre Y. last_name: Leary - first_name: Jean Jacques full_name: Lebrun, Jean Jacques last_name: Lebrun - first_name: Lionel Y.W. full_name: Leck, Lionel Y.W. last_name: Leck - first_name: Jean Philippe full_name: Leduc-Gaudet, Jean Philippe last_name: Leduc-Gaudet - first_name: Changwook full_name: Lee, Changwook last_name: Lee - first_name: Chung Pei full_name: Lee, Chung Pei last_name: Lee - first_name: Da Hye full_name: Lee, Da Hye last_name: Lee - first_name: Edward B. full_name: Lee, Edward B. last_name: Lee - first_name: Erinna F. full_name: Lee, Erinna F. last_name: Lee - first_name: Gyun Min full_name: Lee, Gyun Min last_name: Lee - first_name: He Jin full_name: Lee, He Jin last_name: Lee - first_name: Heung Kyu full_name: Lee, Heung Kyu last_name: Lee - first_name: Jae Man full_name: Lee, Jae Man last_name: Lee - first_name: Jason S. full_name: Lee, Jason S. last_name: Lee - first_name: Jin A. full_name: Lee, Jin A. last_name: Lee - first_name: Joo Yong full_name: Lee, Joo Yong last_name: Lee - first_name: Jun Hee full_name: Lee, Jun Hee last_name: Lee - first_name: Michael full_name: Lee, Michael last_name: Lee - 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first_name: Longhua full_name: Liu, Longhua last_name: Liu - first_name: Meilian full_name: Liu, Meilian last_name: Liu - first_name: Qin full_name: Liu, Qin last_name: Liu - first_name: Wei full_name: Liu, Wei last_name: Liu - first_name: Wende full_name: Liu, Wende last_name: Liu - first_name: Xiao Hong full_name: Liu, Xiao Hong last_name: Liu - first_name: Xiaodong full_name: Liu, Xiaodong last_name: Liu - first_name: Xingguo full_name: Liu, Xingguo last_name: Liu - first_name: Xu full_name: Liu, Xu last_name: Liu - first_name: Xuedong full_name: Liu, Xuedong last_name: Liu - first_name: Yanfen full_name: Liu, Yanfen last_name: Liu - first_name: Yang full_name: Liu, Yang last_name: Liu - first_name: Yang full_name: Liu, Yang last_name: Liu - first_name: Yueyang full_name: Liu, Yueyang last_name: Liu - first_name: Yule full_name: Liu, Yule last_name: Liu - first_name: J. 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first_name: José Antonio full_name: López-Guerrero, José Antonio last_name: López-Guerrero - first_name: Ana T. full_name: López-Jiménez, Ana T. last_name: López-Jiménez - first_name: Óscar full_name: López-Pérez, Óscar last_name: López-Pérez - first_name: Israel full_name: López-Valero, Israel last_name: López-Valero - first_name: Magdalena J. full_name: Lorenowicz, Magdalena J. last_name: Lorenowicz - first_name: Mar full_name: Lorente, Mar last_name: Lorente - first_name: Peter full_name: Lorincz, Peter last_name: Lorincz - first_name: Laura full_name: Lossi, Laura last_name: Lossi - first_name: Sophie full_name: Lotersztajn, Sophie last_name: Lotersztajn - first_name: Penny E. full_name: Lovat, Penny E. last_name: Lovat - first_name: Jonathan F. full_name: Lovell, Jonathan F. last_name: Lovell - first_name: Alenka full_name: Lovy, Alenka last_name: Lovy - first_name: Péter full_name: Lőw, Péter last_name: Lőw - first_name: Guang full_name: Lu, Guang last_name: Lu - first_name: Haocheng full_name: Lu, Haocheng last_name: Lu - first_name: Jia Hong full_name: Lu, Jia Hong last_name: Lu - first_name: Jin Jian full_name: Lu, Jin Jian last_name: Lu - first_name: Mengji full_name: Lu, Mengji last_name: Lu - first_name: Shuyan full_name: Lu, Shuyan last_name: Lu - first_name: Alessandro full_name: Luciani, Alessandro last_name: Luciani - first_name: John M. full_name: Lucocq, John M. last_name: Lucocq - first_name: Paula full_name: Ludovico, Paula last_name: Ludovico - first_name: Micah A. full_name: Luftig, Micah A. last_name: Luftig - first_name: Morten full_name: Luhr, Morten last_name: Luhr - first_name: Diego full_name: Luis-Ravelo, Diego last_name: Luis-Ravelo - first_name: Julian J. full_name: Lum, Julian J. last_name: Lum - first_name: Liany full_name: Luna-Dulcey, Liany last_name: Luna-Dulcey - first_name: Anders H. full_name: Lund, Anders H. last_name: Lund - first_name: Viktor K. full_name: Lund, Viktor K. last_name: Lund - first_name: Jan D. full_name: Lünemann, Jan D. last_name: Lünemann - first_name: Patrick full_name: Lüningschrör, Patrick last_name: Lüningschrör - first_name: Honglin full_name: Luo, Honglin last_name: Luo - first_name: Rongcan full_name: Luo, Rongcan last_name: Luo - first_name: Shouqing full_name: Luo, Shouqing last_name: Luo - first_name: Zhi full_name: Luo, Zhi last_name: Luo - first_name: Claudio full_name: Luparello, Claudio last_name: Luparello - first_name: Bernhard full_name: Lüscher, Bernhard last_name: Lüscher - first_name: Luan full_name: Luu, Luan last_name: Luu - first_name: Alex full_name: Lyakhovich, Alex last_name: Lyakhovich - first_name: Konstantin G. full_name: Lyamzaev, Konstantin G. last_name: Lyamzaev - first_name: Alf Håkon full_name: Lystad, Alf Håkon last_name: Lystad - first_name: Lyubomyr full_name: Lytvynchuk, Lyubomyr last_name: Lytvynchuk - first_name: Alvin C. full_name: Ma, Alvin C. last_name: Ma - first_name: Changle full_name: Ma, Changle last_name: Ma - first_name: Mengxiao full_name: Ma, Mengxiao last_name: Ma - first_name: Ning Fang full_name: Ma, Ning Fang last_name: Ma - first_name: Quan Hong full_name: Ma, Quan Hong last_name: Ma - first_name: Xinliang full_name: Ma, Xinliang last_name: Ma - first_name: Yueyun full_name: Ma, Yueyun last_name: Ma - first_name: Zhenyi full_name: Ma, Zhenyi last_name: Ma - first_name: Ormond A. full_name: Macdougald, Ormond A. last_name: Macdougald - first_name: Fernando full_name: Macian, Fernando last_name: Macian - first_name: Gustavo C. full_name: Macintosh, Gustavo C. last_name: Macintosh - first_name: Jeffrey P. full_name: Mackeigan, Jeffrey P. last_name: Mackeigan - first_name: Kay F. full_name: Macleod, Kay F. last_name: Macleod - first_name: Sandra full_name: Maday, Sandra last_name: Maday - first_name: Frank full_name: Madeo, Frank last_name: Madeo - first_name: Muniswamy full_name: Madesh, Muniswamy last_name: Madesh - first_name: Tobias full_name: Madl, Tobias last_name: Madl - first_name: Julio full_name: Madrigal-Matute, Julio last_name: Madrigal-Matute - first_name: Akiko full_name: Maeda, Akiko last_name: Maeda - first_name: Yasuhiro full_name: Maejima, Yasuhiro last_name: Maejima - first_name: Marta full_name: Magarinos, Marta last_name: Magarinos - first_name: Poornima full_name: Mahavadi, Poornima last_name: Mahavadi - first_name: Emiliano full_name: Maiani, Emiliano last_name: Maiani - first_name: Kenneth full_name: Maiese, Kenneth last_name: Maiese - first_name: Panchanan full_name: Maiti, Panchanan last_name: Maiti - first_name: Maria Chiara full_name: Maiuri, Maria Chiara last_name: Maiuri - first_name: Barbara full_name: Majello, Barbara last_name: Majello - first_name: Michael B. full_name: Major, Michael B. last_name: Major - first_name: Elena full_name: Makareeva, Elena last_name: Makareeva - first_name: Fayaz full_name: Malik, Fayaz last_name: Malik - first_name: Karthik full_name: Mallilankaraman, Karthik last_name: Mallilankaraman - first_name: Walter full_name: Malorni, Walter last_name: Malorni - first_name: Alina full_name: Maloyan, Alina last_name: Maloyan - first_name: Najiba full_name: Mammadova, Najiba last_name: Mammadova - first_name: Gene Chi Wai full_name: Man, Gene Chi Wai last_name: Man - first_name: Federico full_name: Manai, Federico last_name: Manai - first_name: Joseph D. full_name: Mancias, Joseph D. last_name: Mancias - first_name: Eva Maria full_name: Mandelkow, Eva Maria last_name: Mandelkow - first_name: Michael A. full_name: Mandell, Michael A. last_name: Mandell - first_name: Angelo A. full_name: Manfredi, Angelo A. last_name: Manfredi - first_name: Masoud H. full_name: Manjili, Masoud H. last_name: Manjili - first_name: Ravi full_name: Manjithaya, Ravi last_name: Manjithaya - first_name: Patricio full_name: Manque, Patricio last_name: Manque - first_name: Bella B. full_name: Manshian, Bella B. last_name: Manshian - first_name: Raquel full_name: Manzano, Raquel last_name: Manzano - first_name: Claudia full_name: Manzoni, Claudia last_name: Manzoni - first_name: Kai full_name: Mao, Kai last_name: Mao - first_name: Cinzia full_name: Marchese, Cinzia last_name: Marchese - first_name: Sandrine full_name: Marchetti, Sandrine last_name: Marchetti - first_name: Anna Maria full_name: Marconi, Anna Maria last_name: Marconi - first_name: Fabrizio full_name: Marcucci, Fabrizio last_name: Marcucci - first_name: Stefania full_name: Mardente, Stefania last_name: Mardente - first_name: Olga A. full_name: Mareninova, Olga A. last_name: Mareninova - first_name: Marta full_name: Margeta, Marta last_name: Margeta - first_name: Muriel full_name: Mari, Muriel last_name: Mari - first_name: Sara full_name: Marinelli, Sara last_name: Marinelli - first_name: Oliviero full_name: Marinelli, Oliviero last_name: Marinelli - first_name: Guillermo full_name: Mariño, Guillermo last_name: Mariño - first_name: Sofia full_name: Mariotto, Sofia last_name: Mariotto - first_name: Richard S. full_name: Marshall, Richard S. last_name: Marshall - first_name: Mark R. full_name: Marten, Mark R. last_name: Marten - first_name: Sascha full_name: Martens, Sascha last_name: Martens - first_name: Alexandre P.J. full_name: Martin, Alexandre P.J. last_name: Martin - first_name: Katie R. full_name: Martin, Katie R. last_name: Martin - first_name: Sara full_name: Martin, Sara last_name: Martin - first_name: Shaun full_name: Martin, Shaun last_name: Martin - first_name: Adrián full_name: Martín-Segura, Adrián last_name: Martín-Segura - first_name: Miguel A. full_name: Martín-Acebes, Miguel A. last_name: Martín-Acebes - first_name: Inmaculada full_name: Martin-Burriel, Inmaculada last_name: Martin-Burriel - first_name: Marcos full_name: Martin-Rincon, Marcos last_name: Martin-Rincon - first_name: Paloma full_name: Martin-Sanz, Paloma last_name: Martin-Sanz - first_name: José A. full_name: Martina, José A. last_name: Martina - first_name: Wim full_name: Martinet, Wim last_name: Martinet - first_name: Aitor full_name: Martinez, Aitor last_name: Martinez - first_name: Ana full_name: Martinez, Ana last_name: Martinez - first_name: Jennifer full_name: Martinez, Jennifer last_name: Martinez - first_name: Moises full_name: Martinez Velazquez, Moises last_name: Martinez Velazquez - first_name: Nuria full_name: Martinez-Lopez, Nuria last_name: Martinez-Lopez - first_name: Marta full_name: Martinez-Vicente, Marta last_name: Martinez-Vicente - first_name: Daniel O. full_name: Martins, Daniel O. last_name: Martins - first_name: Joilson O. full_name: Martins, Joilson O. last_name: Martins - first_name: Waleska K. full_name: Martins, Waleska K. last_name: Martins - first_name: Tania full_name: Martins-Marques, Tania last_name: Martins-Marques - first_name: Emanuele full_name: Marzetti, Emanuele last_name: Marzetti - first_name: Shashank full_name: Masaldan, Shashank last_name: Masaldan - first_name: Celine full_name: Masclaux-Daubresse, Celine last_name: Masclaux-Daubresse - first_name: Douglas G. full_name: Mashek, Douglas G. last_name: Mashek - first_name: Valentina full_name: Massa, Valentina last_name: Massa - first_name: Lourdes full_name: Massieu, Lourdes last_name: Massieu - first_name: Glenn R. full_name: Masson, Glenn R. last_name: Masson - first_name: Laura full_name: Masuelli, Laura last_name: Masuelli - first_name: Anatoliy I. full_name: Masyuk, Anatoliy I. last_name: Masyuk - first_name: Tetyana V. full_name: Masyuk, Tetyana V. last_name: Masyuk - first_name: Paola full_name: Matarrese, Paola last_name: Matarrese - first_name: Ander full_name: Matheu, Ander last_name: Matheu - first_name: Satoaki full_name: Matoba, Satoaki last_name: Matoba - first_name: Sachiko full_name: Matsuzaki, Sachiko last_name: Matsuzaki - first_name: Pamela full_name: Mattar, Pamela last_name: Mattar - first_name: Alessandro full_name: Matte, Alessandro last_name: Matte - first_name: Domenico full_name: Mattoscio, Domenico last_name: Mattoscio - first_name: José L. full_name: Mauriz, José L. last_name: Mauriz - first_name: Mario full_name: Mauthe, Mario last_name: Mauthe - first_name: Caroline full_name: Mauvezin, Caroline last_name: Mauvezin - first_name: Emanual full_name: Maverakis, Emanual last_name: Maverakis - first_name: Paola full_name: Maycotte, Paola last_name: Maycotte - first_name: Johanna full_name: Mayer, Johanna last_name: Mayer - first_name: Gianluigi full_name: Mazzoccoli, Gianluigi last_name: Mazzoccoli - first_name: Cristina full_name: Mazzoni, Cristina last_name: Mazzoni - first_name: Joseph R. full_name: Mazzulli, Joseph R. last_name: Mazzulli - first_name: Nami full_name: Mccarty, Nami last_name: Mccarty - first_name: Christine full_name: Mcdonald, Christine last_name: Mcdonald - first_name: Mitchell R. full_name: Mcgill, Mitchell R. last_name: Mcgill - first_name: Sharon L. full_name: Mckenna, Sharon L. last_name: Mckenna - first_name: Beth Ann full_name: Mclaughlin, Beth Ann last_name: Mclaughlin - first_name: Fionn full_name: Mcloughlin, Fionn last_name: Mcloughlin - first_name: Mark A. full_name: Mcniven, Mark A. last_name: Mcniven - first_name: Thomas G. full_name: Mcwilliams, Thomas G. last_name: Mcwilliams - first_name: Fatima full_name: Mechta-Grigoriou, Fatima last_name: Mechta-Grigoriou - first_name: Tania Catarina full_name: Medeiros, Tania Catarina last_name: Medeiros - first_name: Diego L. full_name: Medina, Diego L. last_name: Medina - first_name: Lynn A. full_name: Megeney, Lynn A. last_name: Megeney - first_name: Klara full_name: Megyeri, Klara last_name: Megyeri - 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Ruth last_name: Montes - first_name: Barbara full_name: Montico, Barbara last_name: Montico - first_name: Vinod K. full_name: Mony, Vinod K. last_name: Mony - first_name: Giacomo full_name: Monzio Compagnoni, Giacomo last_name: Monzio Compagnoni - first_name: Michael N. full_name: Moore, Michael N. last_name: Moore - first_name: Mohammad A. full_name: Moosavi, Mohammad A. last_name: Moosavi - first_name: Ana L. full_name: Mora, Ana L. last_name: Mora - first_name: Marina full_name: Mora, Marina last_name: Mora - first_name: David full_name: Morales-Alamo, David last_name: Morales-Alamo - first_name: Rosario full_name: Moratalla, Rosario last_name: Moratalla - first_name: Paula I. full_name: Moreira, Paula I. last_name: Moreira - first_name: Elena full_name: Morelli, Elena last_name: Morelli - first_name: Sandra full_name: Moreno, Sandra last_name: Moreno - first_name: Daniel full_name: Moreno-Blas, Daniel last_name: Moreno-Blas - first_name: Viviana full_name: Moresi, Viviana last_name: Moresi - first_name: Benjamin full_name: Morga, Benjamin last_name: Morga - first_name: Alwena H. full_name: Morgan, Alwena H. last_name: Morgan - first_name: Fabrice full_name: Morin, Fabrice last_name: Morin - first_name: Hideaki full_name: Morishita, Hideaki last_name: Morishita - first_name: Orson L. full_name: Moritz, Orson L. last_name: Moritz - first_name: Mariko full_name: Moriyama, Mariko last_name: Moriyama - first_name: Yuji full_name: Moriyasu, Yuji last_name: Moriyasu - first_name: Manuela full_name: Morleo, Manuela last_name: Morleo - first_name: Eugenia full_name: Morselli, Eugenia last_name: Morselli - first_name: Jose F. full_name: Moruno-Manchon, Jose F. last_name: Moruno-Manchon - first_name: Jorge full_name: Moscat, Jorge last_name: Moscat - first_name: Serge full_name: Mostowy, Serge last_name: Mostowy - first_name: Elisa full_name: Motori, Elisa last_name: Motori - first_name: Andrea Felinto full_name: Moura, Andrea Felinto last_name: Moura - first_name: Naima full_name: Moustaid-Moussa, Naima last_name: Moustaid-Moussa - first_name: Maria full_name: Mrakovcic, Maria last_name: Mrakovcic - first_name: Gabriel full_name: Muciño-Hernández, Gabriel last_name: Muciño-Hernández - first_name: Anupam full_name: Mukherjee, Anupam last_name: Mukherjee - first_name: Subhadip full_name: Mukhopadhyay, Subhadip last_name: Mukhopadhyay - first_name: Jean M. full_name: Mulcahy Levy, Jean M. last_name: Mulcahy Levy - first_name: Victoriano full_name: Mulero, Victoriano last_name: Mulero - first_name: Sylviane full_name: Muller, Sylviane last_name: Muller - first_name: Christian full_name: Münch, Christian last_name: Münch - first_name: Ashok full_name: Munjal, Ashok last_name: Munjal - first_name: Pura full_name: Munoz-Canoves, Pura last_name: Munoz-Canoves - first_name: Teresa full_name: Muñoz-Galdeano, Teresa last_name: Muñoz-Galdeano - first_name: Christian full_name: Münz, Christian last_name: Münz - first_name: Tomokazu full_name: Murakawa, Tomokazu last_name: Murakawa - first_name: Claudia full_name: Muratori, Claudia last_name: Muratori - first_name: Brona M. full_name: Murphy, Brona M. last_name: Murphy - first_name: J. Patrick full_name: Murphy, J. Patrick last_name: Murphy - first_name: Aditya full_name: Murthy, Aditya last_name: Murthy - first_name: Timo T. full_name: Myöhänen, Timo T. last_name: Myöhänen - first_name: Indira U. full_name: Mysorekar, Indira U. last_name: Mysorekar - first_name: Jennifer full_name: Mytych, Jennifer last_name: Mytych - first_name: Seyed Mohammad full_name: Nabavi, Seyed Mohammad last_name: Nabavi - first_name: Massimo full_name: Nabissi, Massimo last_name: Nabissi - first_name: Péter full_name: Nagy, Péter last_name: Nagy - first_name: Jihoon full_name: Nah, Jihoon last_name: Nah - first_name: Aimable full_name: Nahimana, Aimable last_name: Nahimana - first_name: Ichiro full_name: Nakagawa, Ichiro last_name: Nakagawa - first_name: Ken full_name: Nakamura, Ken last_name: Nakamura - first_name: Hitoshi full_name: Nakatogawa, Hitoshi last_name: Nakatogawa - first_name: Shyam S. full_name: Nandi, Shyam S. last_name: Nandi - first_name: Meera full_name: Nanjundan, Meera last_name: Nanjundan - first_name: Monica full_name: Nanni, Monica last_name: Nanni - first_name: Gennaro full_name: Napolitano, Gennaro last_name: Napolitano - first_name: Roberta full_name: Nardacci, Roberta last_name: Nardacci - first_name: Masashi full_name: Narita, Masashi last_name: Narita - first_name: Melissa full_name: Nassif, Melissa last_name: Nassif - first_name: Ilana full_name: Nathan, Ilana last_name: Nathan - first_name: Manabu full_name: Natsumeda, Manabu last_name: Natsumeda - first_name: Ryno J. full_name: Naude, Ryno J. last_name: Naude - first_name: Christin full_name: Naumann, Christin last_name: Naumann - first_name: Olaia full_name: Naveiras, Olaia last_name: Naveiras - first_name: Fatemeh full_name: Navid, Fatemeh last_name: Navid - first_name: Steffan T. full_name: Nawrocki, Steffan T. last_name: Nawrocki - first_name: Taras Y. full_name: Nazarko, Taras Y. last_name: Nazarko - first_name: Francesca full_name: Nazio, Francesca last_name: Nazio - first_name: Florentina full_name: Negoita, Florentina last_name: Negoita - first_name: Thomas full_name: Neill, Thomas last_name: Neill - first_name: Amanda L. full_name: Neisch, Amanda L. last_name: Neisch - first_name: Luca M. full_name: Neri, Luca M. last_name: Neri - first_name: Mihai G. full_name: Netea, Mihai G. last_name: Netea - first_name: Patrick full_name: Neubert, Patrick last_name: Neubert - first_name: Thomas P. full_name: Neufeld, Thomas P. last_name: Neufeld - first_name: Dietbert full_name: Neumann, Dietbert last_name: Neumann - first_name: Albert full_name: Neutzner, Albert last_name: Neutzner - first_name: Phillip T. full_name: Newton, Phillip T. last_name: Newton - first_name: Paul A. full_name: Ney, Paul A. last_name: Ney - first_name: Ioannis P. full_name: Nezis, Ioannis P. last_name: Nezis - first_name: Charlene C.W. full_name: Ng, Charlene C.W. last_name: Ng - first_name: Tzi Bun full_name: Ng, Tzi Bun last_name: Ng - first_name: Hang T.T. full_name: Nguyen, Hang T.T. last_name: Nguyen - first_name: Long T. full_name: Nguyen, Long T. last_name: Nguyen - first_name: Hong Min full_name: Ni, Hong Min last_name: Ni - first_name: Clíona full_name: Ní Cheallaigh, Clíona last_name: Ní Cheallaigh - first_name: Zhenhong full_name: Ni, Zhenhong last_name: Ni - first_name: M. Celeste full_name: Nicolao, M. 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Bishr full_name: Omary, M. Bishr last_name: Omary - first_name: Gizem full_name: Önal, Gizem last_name: Önal - first_name: Martin full_name: Ondrej, Martin last_name: Ondrej - first_name: Sang Bing full_name: Ong, Sang Bing last_name: Ong - first_name: Sang Ging full_name: Ong, Sang Ging last_name: Ong - first_name: Anna full_name: Onnis, Anna last_name: Onnis - first_name: Juan A. full_name: Orellana, Juan A. last_name: Orellana - first_name: Sara full_name: Orellana-Muñoz, Sara last_name: Orellana-Muñoz - first_name: Maria Del Mar full_name: Ortega-Villaizan, Maria Del Mar last_name: Ortega-Villaizan - first_name: Xilma R. full_name: Ortiz-Gonzalez, Xilma R. last_name: Ortiz-Gonzalez - first_name: Elena full_name: Ortona, Elena last_name: Ortona - first_name: Heinz D. full_name: Osiewacz, Heinz D. last_name: Osiewacz - first_name: Abdel Hamid K. full_name: Osman, Abdel Hamid K. last_name: Osman - first_name: Rosario full_name: Osta, Rosario last_name: Osta - first_name: Marisa S. full_name: Otegui, Marisa S. last_name: Otegui - first_name: Kinya full_name: Otsu, Kinya last_name: Otsu - first_name: Christiane full_name: Ott, Christiane last_name: Ott - first_name: Luisa full_name: Ottobrini, Luisa last_name: Ottobrini - first_name: Jing Hsiung James full_name: Ou, Jing Hsiung James last_name: Ou - first_name: Tiago F. full_name: Outeiro, Tiago F. last_name: Outeiro - first_name: Inger full_name: Oynebraten, Inger last_name: Oynebraten - first_name: Melek full_name: Ozturk, Melek last_name: Ozturk - first_name: Gilles full_name: Pagès, Gilles last_name: Pagès - first_name: Susanta full_name: Pahari, Susanta last_name: Pahari - first_name: Marta full_name: Pajares, Marta last_name: Pajares - first_name: Utpal B. full_name: Pajvani, Utpal B. last_name: Pajvani - first_name: Rituraj full_name: Pal, Rituraj last_name: Pal - first_name: Simona full_name: Paladino, Simona last_name: Paladino - first_name: Nicolas full_name: Pallet, Nicolas last_name: Pallet - first_name: Michela full_name: Palmieri, Michela last_name: Palmieri - first_name: Giuseppe full_name: Palmisano, Giuseppe last_name: Palmisano - first_name: Camilla full_name: Palumbo, Camilla last_name: Palumbo - first_name: Francesco full_name: Pampaloni, Francesco last_name: Pampaloni - first_name: Lifeng full_name: Pan, Lifeng last_name: Pan - first_name: Qingjun full_name: Pan, Qingjun last_name: Pan - first_name: Wenliang full_name: Pan, Wenliang last_name: Pan - first_name: Xin full_name: Pan, Xin last_name: Pan - first_name: Ganna full_name: Panasyuk, Ganna last_name: Panasyuk - first_name: Rahul full_name: Pandey, Rahul last_name: Pandey - first_name: Udai B. full_name: Pandey, Udai B. last_name: Pandey - first_name: Vrajesh full_name: Pandya, Vrajesh last_name: Pandya - first_name: Francesco full_name: Paneni, Francesco last_name: Paneni - first_name: Shirley Y. full_name: Pang, Shirley Y. last_name: Pang - first_name: Elisa full_name: Panzarini, Elisa last_name: Panzarini - first_name: Daniela L. full_name: Papademetrio, Daniela L. last_name: Papademetrio - first_name: Elena full_name: Papaleo, Elena last_name: Papaleo - first_name: Daniel full_name: Papinski, Daniel last_name: Papinski - first_name: Diana full_name: Papp, Diana last_name: Papp - first_name: Eun Chan full_name: Park, Eun Chan last_name: Park - first_name: Hwan Tae full_name: Park, Hwan Tae last_name: Park - first_name: Ji Man full_name: Park, Ji Man last_name: Park - first_name: Jong In full_name: Park, Jong In last_name: Park - first_name: Joon Tae full_name: Park, Joon Tae last_name: Park - first_name: Junsoo full_name: Park, Junsoo last_name: Park - first_name: Sang Chul full_name: Park, Sang Chul last_name: Park - first_name: Sang Youel full_name: Park, Sang Youel last_name: Park - first_name: Abraham H. full_name: Parola, Abraham H. last_name: Parola - first_name: Jan B. full_name: Parys, Jan B. last_name: Parys - first_name: Adrien full_name: Pasquier, Adrien last_name: Pasquier - first_name: Benoit full_name: Pasquier, Benoit last_name: Pasquier - first_name: João F. full_name: Passos, João F. last_name: Passos - first_name: Nunzia full_name: Pastore, Nunzia last_name: Pastore - first_name: Hemal H. full_name: Patel, Hemal H. last_name: Patel - first_name: Daniel full_name: Patschan, Daniel last_name: Patschan - first_name: Sophie full_name: Pattingre, Sophie last_name: Pattingre - first_name: Gustavo full_name: Pedraza-Alva, Gustavo last_name: Pedraza-Alva - first_name: Jose full_name: Pedraza-Chaverri, Jose last_name: Pedraza-Chaverri - first_name: Zully full_name: Pedrozo, Zully last_name: Pedrozo - first_name: Gang full_name: Pei, Gang last_name: Pei - first_name: Jianming full_name: Pei, Jianming last_name: Pei - first_name: Hadas full_name: Peled-Zehavi, Hadas last_name: Peled-Zehavi - first_name: Joaquín M. full_name: Pellegrini, Joaquín M. last_name: Pellegrini - first_name: Joffrey full_name: Pelletier, Joffrey last_name: Pelletier - first_name: Miguel A. full_name: Peñalva, Miguel A. last_name: Peñalva - first_name: Di full_name: Peng, Di last_name: Peng - first_name: Ying full_name: Peng, Ying last_name: Peng - first_name: Fabio full_name: Penna, Fabio last_name: Penna - first_name: Maria full_name: Pennuto, Maria last_name: Pennuto - first_name: Francesca full_name: Pentimalli, Francesca last_name: Pentimalli - first_name: Cláudia M.F. full_name: Pereira, Cláudia M.F. last_name: Pereira - first_name: Gustavo J.S. full_name: Pereira, Gustavo J.S. last_name: Pereira - first_name: Lilian C. full_name: Pereira, Lilian C. last_name: Pereira - first_name: Luis full_name: Pereira De Almeida, Luis last_name: Pereira De Almeida - first_name: Nirma D. full_name: Perera, Nirma D. last_name: Perera - first_name: Ángel full_name: Pérez-Lara, Ángel last_name: Pérez-Lara - first_name: Ana B. full_name: Perez-Oliva, Ana B. last_name: Perez-Oliva - first_name: María Esther full_name: Pérez-Pérez, María Esther last_name: Pérez-Pérez - first_name: Palsamy full_name: Periyasamy, Palsamy last_name: Periyasamy - first_name: Andras full_name: Perl, Andras last_name: Perl - first_name: Cristiana full_name: Perrotta, Cristiana last_name: Perrotta - first_name: Ida full_name: Perrotta, Ida last_name: Perrotta - first_name: Richard G. full_name: Pestell, Richard G. last_name: Pestell - first_name: Morten full_name: Petersen, Morten last_name: Petersen - first_name: Irina full_name: Petrache, Irina last_name: Petrache - first_name: Goran full_name: Petrovski, Goran last_name: Petrovski - first_name: Thorsten full_name: Pfirrmann, Thorsten last_name: Pfirrmann - first_name: Astrid S. full_name: Pfister, Astrid S. last_name: Pfister - first_name: Jennifer A. full_name: Philips, Jennifer A. last_name: Philips - first_name: Huifeng full_name: Pi, Huifeng last_name: Pi - first_name: Anna full_name: Picca, Anna last_name: Picca - first_name: Alicia M. full_name: Pickrell, Alicia M. last_name: Pickrell - first_name: Sandy full_name: Picot, Sandy last_name: Picot - first_name: Giovanna M. full_name: Pierantoni, Giovanna M. last_name: Pierantoni - first_name: Marina full_name: Pierdominici, Marina last_name: Pierdominici - first_name: Philippe full_name: Pierre, Philippe last_name: Pierre - first_name: Valérie full_name: Pierrefite-Carle, Valérie last_name: Pierrefite-Carle - first_name: Karolina full_name: Pierzynowska, Karolina last_name: Pierzynowska - first_name: Federico full_name: Pietrocola, Federico last_name: Pietrocola - first_name: Miroslawa full_name: Pietruczuk, Miroslawa last_name: Pietruczuk - first_name: Claudio full_name: Pignata, Claudio last_name: Pignata - first_name: Felipe X. full_name: Pimentel-Muiños, Felipe X. last_name: Pimentel-Muiños - first_name: Mario full_name: Pinar, Mario last_name: Pinar - first_name: Roberta O. full_name: Pinheiro, Roberta O. last_name: Pinheiro - first_name: Ronit full_name: Pinkas-Kramarski, Ronit last_name: Pinkas-Kramarski - first_name: Paolo full_name: Pinton, Paolo last_name: Pinton - first_name: Karolina full_name: Pircs, Karolina last_name: Pircs - first_name: Sujan full_name: Piya, Sujan last_name: Piya - first_name: Paola full_name: Pizzo, Paola last_name: Pizzo - first_name: Theo S. full_name: Plantinga, Theo S. last_name: Plantinga - 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first_name: Soledad full_name: Porte Alcon, Soledad last_name: Porte Alcon - first_name: Eliana full_name: Portilla-Fernandez, Eliana last_name: Portilla-Fernandez - first_name: Martin full_name: Post, Martin last_name: Post - first_name: Malia B. full_name: Potts, Malia B. last_name: Potts - first_name: Joanna full_name: Poulton, Joanna last_name: Poulton - first_name: Ted full_name: Powers, Ted last_name: Powers - first_name: Veena full_name: Prahlad, Veena last_name: Prahlad - first_name: Tomasz K. full_name: Prajsnar, Tomasz K. last_name: Prajsnar - first_name: Domenico full_name: Praticò, Domenico last_name: Praticò - first_name: Rosaria full_name: Prencipe, Rosaria last_name: Prencipe - first_name: Muriel full_name: Priault, Muriel last_name: Priault - first_name: Tassula full_name: Proikas-Cezanne, Tassula last_name: Proikas-Cezanne - first_name: Vasilis J. full_name: Promponas, Vasilis J. last_name: Promponas - first_name: Christopher G. full_name: Proud, Christopher G. last_name: Proud - 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first_name: Michael J. full_name: Ragusa, Michael J. last_name: Ragusa - first_name: Nader full_name: Rahimi, Nader last_name: Rahimi - first_name: Marveh full_name: Rahmati, Marveh last_name: Rahmati - first_name: Valeria full_name: Raia, Valeria last_name: Raia - first_name: Nuno full_name: Raimundo, Nuno last_name: Raimundo - first_name: Namakkal Soorappan full_name: Rajasekaran, Namakkal Soorappan last_name: Rajasekaran - first_name: Sriganesh full_name: Ramachandra Rao, Sriganesh last_name: Ramachandra Rao - first_name: Abdelhaq full_name: Rami, Abdelhaq last_name: Rami - first_name: Ignacio full_name: Ramírez-Pardo, Ignacio last_name: Ramírez-Pardo - first_name: David B. full_name: Ramsden, David B. last_name: Ramsden - first_name: Felix full_name: Randow, Felix last_name: Randow - first_name: Pundi N. full_name: Rangarajan, Pundi N. last_name: Rangarajan - first_name: Danilo full_name: Ranieri, Danilo last_name: Ranieri - first_name: Hai full_name: Rao, Hai last_name: Rao - first_name: Lang full_name: Rao, Lang last_name: Rao - first_name: Rekha full_name: Rao, Rekha last_name: Rao - first_name: Sumit full_name: Rathore, Sumit last_name: Rathore - first_name: J. Arjuna full_name: Ratnayaka, J. Arjuna last_name: Ratnayaka - first_name: Edward A. full_name: Ratovitski, Edward A. last_name: Ratovitski - first_name: Palaniyandi full_name: Ravanan, Palaniyandi last_name: Ravanan - first_name: Gloria full_name: Ravegnini, Gloria last_name: Ravegnini - first_name: Swapan K. full_name: Ray, Swapan K. last_name: Ray - first_name: Babak full_name: Razani, Babak last_name: Razani - first_name: Vito full_name: Rebecca, Vito last_name: Rebecca - first_name: Fulvio full_name: Reggiori, Fulvio last_name: Reggiori - first_name: Anne full_name: Régnier-Vigouroux, Anne last_name: Régnier-Vigouroux - first_name: Andreas S. full_name: Reichert, Andreas S. last_name: Reichert - first_name: David full_name: Reigada, David last_name: Reigada - first_name: Jan H. full_name: Reiling, Jan H. last_name: Reiling - first_name: Theo full_name: Rein, Theo last_name: Rein - first_name: Siegfried full_name: Reipert, Siegfried last_name: Reipert - first_name: Rokeya Sultana full_name: Rekha, Rokeya Sultana last_name: Rekha - first_name: Hongmei full_name: Ren, Hongmei last_name: Ren - first_name: Jun full_name: Ren, Jun last_name: Ren - first_name: Weichao full_name: Ren, Weichao last_name: Ren - first_name: Tristan full_name: Renault, Tristan last_name: Renault - first_name: Giorgia full_name: Renga, Giorgia last_name: Renga - first_name: Karen full_name: Reue, Karen last_name: Reue - first_name: Kim full_name: Rewitz, Kim last_name: Rewitz - first_name: Bruna full_name: Ribeiro De Andrade Ramos, Bruna last_name: Ribeiro De Andrade Ramos - first_name: S. Amer full_name: Riazuddin, S. Amer last_name: Riazuddin - first_name: Teresa M. full_name: Ribeiro-Rodrigues, Teresa M. last_name: Ribeiro-Rodrigues - first_name: Jean Ehrland full_name: Ricci, Jean Ehrland last_name: Ricci - first_name: Romeo full_name: Ricci, Romeo last_name: Ricci - first_name: Victoria full_name: Riccio, Victoria last_name: Riccio - first_name: Des R. full_name: Richardson, Des R. last_name: Richardson - first_name: Yasuko full_name: Rikihisa, Yasuko last_name: Rikihisa - first_name: Makarand V. full_name: Risbud, Makarand V. last_name: Risbud - first_name: Ruth M. full_name: Risueño, Ruth M. last_name: Risueño - first_name: Konstantinos full_name: Ritis, Konstantinos last_name: Ritis - first_name: Salvatore full_name: Rizza, Salvatore last_name: Rizza - first_name: Rosario full_name: Rizzuto, Rosario last_name: Rizzuto - first_name: Helen C. full_name: Roberts, Helen C. last_name: Roberts - first_name: Luke D. full_name: Roberts, Luke D. last_name: Roberts - first_name: Katherine J. full_name: Robinson, Katherine J. last_name: Robinson - first_name: Maria Carmela full_name: Roccheri, Maria Carmela last_name: Roccheri - first_name: Stephane full_name: Rocchi, Stephane last_name: Rocchi - first_name: George G. full_name: Rodney, George G. last_name: Rodney - first_name: Tiago full_name: Rodrigues, Tiago last_name: Rodrigues - first_name: Vagner Ramon full_name: Rodrigues Silva, Vagner Ramon last_name: Rodrigues Silva - first_name: Amaia full_name: Rodriguez, Amaia last_name: Rodriguez - first_name: Ruth full_name: Rodriguez-Barrueco, Ruth last_name: Rodriguez-Barrueco - first_name: Nieves full_name: Rodriguez-Henche, Nieves last_name: Rodriguez-Henche - first_name: Humberto full_name: Rodriguez-Rocha, Humberto last_name: Rodriguez-Rocha - first_name: Jeroen full_name: Roelofs, Jeroen last_name: Roelofs - first_name: Robert S. full_name: Rogers, Robert S. last_name: Rogers - first_name: Vladimir V. full_name: Rogov, Vladimir V. last_name: Rogov - first_name: Ana I. full_name: Rojo, Ana I. last_name: Rojo - first_name: Krzysztof full_name: Rolka, Krzysztof last_name: Rolka - first_name: Vanina full_name: Romanello, Vanina last_name: Romanello - first_name: Luigina full_name: Romani, Luigina last_name: Romani - first_name: Alessandra full_name: Romano, Alessandra last_name: Romano - first_name: Patricia S. full_name: Romano, Patricia S. last_name: Romano - first_name: David full_name: Romeo-Guitart, David last_name: Romeo-Guitart - first_name: Luis C. full_name: Romero, Luis C. last_name: Romero - first_name: Montserrat full_name: Romero, Montserrat last_name: Romero - first_name: Joseph C. full_name: Roney, Joseph C. last_name: Roney - first_name: Christopher full_name: Rongo, Christopher last_name: Rongo - first_name: Sante full_name: Roperto, Sante last_name: Roperto - first_name: Mathias T. full_name: Rosenfeldt, Mathias T. last_name: Rosenfeldt - first_name: Philip full_name: Rosenstiel, Philip last_name: Rosenstiel - first_name: Anne G. full_name: Rosenwald, Anne G. last_name: Rosenwald - first_name: Kevin A. full_name: Roth, Kevin A. last_name: Roth - first_name: Lynn full_name: Roth, Lynn last_name: Roth - first_name: Steven full_name: Roth, Steven last_name: Roth - first_name: Kasper M.A. full_name: Rouschop, Kasper M.A. last_name: Rouschop - first_name: Benoit D. full_name: Roussel, Benoit D. last_name: Roussel - first_name: Sophie full_name: Roux, Sophie last_name: Roux - first_name: Patrizia full_name: Rovere-Querini, Patrizia last_name: Rovere-Querini - first_name: Ajit full_name: Roy, Ajit last_name: Roy - first_name: Aurore full_name: Rozieres, Aurore last_name: Rozieres - first_name: Diego full_name: Ruano, Diego last_name: Ruano - first_name: David C. full_name: Rubinsztein, David C. last_name: Rubinsztein - first_name: Maria P. full_name: Rubtsova, Maria P. last_name: Rubtsova - first_name: Klaus full_name: Ruckdeschel, Klaus last_name: Ruckdeschel - first_name: Christoph full_name: Ruckenstuhl, Christoph last_name: Ruckenstuhl - first_name: Emil full_name: Rudolf, Emil last_name: Rudolf - first_name: Rüdiger full_name: Rudolf, Rüdiger last_name: Rudolf - first_name: Alessandra full_name: Ruggieri, Alessandra last_name: Ruggieri - first_name: Avnika Ashok full_name: Ruparelia, Avnika Ashok last_name: Ruparelia - first_name: Paola full_name: Rusmini, Paola last_name: Rusmini - first_name: Ryan R. full_name: Russell, Ryan R. last_name: Russell - first_name: Gian Luigi full_name: Russo, Gian Luigi last_name: Russo - first_name: Maria full_name: Russo, Maria last_name: Russo - first_name: Rossella full_name: Russo, Rossella last_name: Russo - first_name: Oxana O. full_name: Ryabaya, Oxana O. last_name: Ryabaya - first_name: Kevin M. full_name: Ryan, Kevin M. last_name: Ryan - first_name: Kwon Yul full_name: Ryu, Kwon Yul last_name: Ryu - first_name: Maria full_name: Sabater-Arcis, Maria last_name: Sabater-Arcis - first_name: Ulka full_name: Sachdev, Ulka last_name: Sachdev - first_name: Michael full_name: Sacher, Michael last_name: Sacher - first_name: Carsten full_name: Sachse, Carsten last_name: Sachse - first_name: Abhishek full_name: Sadhu, Abhishek last_name: Sadhu - first_name: Junichi full_name: Sadoshima, Junichi last_name: Sadoshima - first_name: Nathaniel full_name: Safren, Nathaniel last_name: Safren - first_name: Paul full_name: Saftig, Paul last_name: Saftig - first_name: Antonia P. full_name: Sagona, Antonia P. last_name: Sagona - first_name: Gaurav full_name: Sahay, Gaurav last_name: Sahay - first_name: Amirhossein full_name: Sahebkar, Amirhossein last_name: Sahebkar - first_name: Mustafa full_name: Sahin, Mustafa last_name: Sahin - first_name: Ozgur full_name: Sahin, Ozgur last_name: Sahin - first_name: Sumit full_name: Sahni, Sumit last_name: Sahni - first_name: Nayuta full_name: Saito, Nayuta last_name: Saito - first_name: Shigeru full_name: Saito, Shigeru last_name: Saito - first_name: Tsunenori full_name: Saito, Tsunenori last_name: Saito - first_name: Ryohei full_name: Sakai, Ryohei last_name: Sakai - first_name: Yasuyoshi full_name: Sakai, Yasuyoshi last_name: Sakai - first_name: Jun Ichi full_name: Sakamaki, Jun Ichi last_name: Sakamaki - first_name: Kalle full_name: Saksela, Kalle last_name: Saksela - first_name: Gloria full_name: Salazar, Gloria last_name: Salazar - first_name: Anna full_name: Salazar-Degracia, Anna last_name: Salazar-Degracia - first_name: Ghasem H. full_name: Salekdeh, Ghasem H. last_name: Salekdeh - first_name: Ashok K. full_name: Saluja, Ashok K. last_name: Saluja - first_name: Belém full_name: Sampaio-Marques, Belém last_name: Sampaio-Marques - first_name: Maria Cecilia full_name: Sanchez, Maria Cecilia last_name: Sanchez - first_name: Jose A. full_name: Sanchez-Alcazar, Jose A. last_name: Sanchez-Alcazar - first_name: Victoria full_name: Sanchez-Vera, Victoria last_name: Sanchez-Vera - first_name: Vanessa full_name: Sancho-Shimizu, Vanessa last_name: Sancho-Shimizu - first_name: J. Thomas full_name: Sanderson, J. Thomas last_name: Sanderson - first_name: Marco full_name: Sandri, Marco last_name: Sandri - first_name: Stefano full_name: Santaguida, Stefano last_name: Santaguida - first_name: Laura full_name: Santambrogio, Laura last_name: Santambrogio - first_name: Magda M. full_name: Santana, Magda M. last_name: Santana - first_name: Giorgio full_name: Santoni, Giorgio last_name: Santoni - first_name: Alberto full_name: Sanz, Alberto last_name: Sanz - first_name: Pascual full_name: Sanz, Pascual last_name: Sanz - first_name: Shweta full_name: Saran, Shweta last_name: Saran - first_name: Marco full_name: Sardiello, Marco last_name: Sardiello - first_name: Timothy J. full_name: Sargeant, Timothy J. last_name: Sargeant - first_name: Apurva full_name: Sarin, Apurva last_name: Sarin - first_name: Chinmoy full_name: Sarkar, Chinmoy last_name: Sarkar - first_name: Sovan full_name: Sarkar, Sovan last_name: Sarkar - first_name: Maria Rosa full_name: Sarrias, Maria Rosa last_name: Sarrias - first_name: Surajit full_name: Sarkar, Surajit last_name: Sarkar - first_name: Dipanka Tanu full_name: Sarmah, Dipanka Tanu last_name: Sarmah - first_name: Jaakko full_name: Sarparanta, Jaakko last_name: Sarparanta - first_name: Aishwarya full_name: Sathyanarayan, Aishwarya last_name: Sathyanarayan - first_name: Ranganayaki full_name: Sathyanarayanan, Ranganayaki last_name: Sathyanarayanan - first_name: K. Matthew full_name: Scaglione, K. 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Ivana full_name: Scovassi, A. 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first_name: Elena full_name: Seranova, Elena last_name: Seranova - first_name: Consolato full_name: Sergi, Consolato last_name: Sergi - first_name: Ruth full_name: Serra-Moreno, Ruth last_name: Serra-Moreno - first_name: Hiromi full_name: Sesaki, Hiromi last_name: Sesaki - first_name: Carmine full_name: Settembre, Carmine last_name: Settembre - first_name: Subba Rao Gangi full_name: Setty, Subba Rao Gangi last_name: Setty - first_name: Gianluca full_name: Sgarbi, Gianluca last_name: Sgarbi - first_name: Ou full_name: Sha, Ou last_name: Sha - first_name: John J. full_name: Shacka, John J. last_name: Shacka - first_name: Javeed A. full_name: Shah, Javeed A. last_name: Shah - first_name: Dantong full_name: Shang, Dantong last_name: Shang - first_name: Changshun full_name: Shao, Changshun last_name: Shao - first_name: Feng full_name: Shao, Feng last_name: Shao - first_name: Soroush full_name: Sharbati, Soroush last_name: Sharbati - first_name: Lisa M. full_name: Sharkey, Lisa M. last_name: Sharkey - first_name: Dipali full_name: Sharma, Dipali last_name: Sharma - first_name: Gaurav full_name: Sharma, Gaurav last_name: Sharma - first_name: Kulbhushan full_name: Sharma, Kulbhushan last_name: Sharma - first_name: Pawan full_name: Sharma, Pawan last_name: Sharma - first_name: Surendra full_name: Sharma, Surendra last_name: Sharma - first_name: Han Ming full_name: Shen, Han Ming last_name: Shen - first_name: Hongtao full_name: Shen, Hongtao last_name: Shen - first_name: Jiangang full_name: Shen, Jiangang last_name: Shen - first_name: Ming full_name: Shen, Ming last_name: Shen - first_name: Weili full_name: Shen, Weili last_name: Shen - first_name: Zheni full_name: Shen, Zheni last_name: Shen - first_name: Rui full_name: Sheng, Rui last_name: Sheng - first_name: Zhi full_name: Sheng, Zhi last_name: Sheng - first_name: Zu Hang full_name: Sheng, Zu Hang last_name: Sheng - first_name: Jianjian full_name: Shi, Jianjian last_name: Shi - first_name: Xiaobing full_name: Shi, Xiaobing last_name: Shi - first_name: Ying Hong full_name: Shi, Ying Hong last_name: Shi - first_name: Kahori full_name: Shiba-Fukushima, Kahori last_name: Shiba-Fukushima - first_name: Jeng Jer full_name: Shieh, Jeng Jer last_name: Shieh - first_name: Yohta full_name: Shimada, Yohta last_name: Shimada - first_name: Shigeomi full_name: Shimizu, Shigeomi last_name: Shimizu - first_name: Makoto full_name: Shimozawa, Makoto last_name: Shimozawa - first_name: Takahiro full_name: Shintani, Takahiro last_name: Shintani - first_name: Christopher J. full_name: Shoemaker, Christopher J. last_name: Shoemaker - first_name: Shahla full_name: Shojaei, Shahla last_name: Shojaei - first_name: Ikuo full_name: Shoji, Ikuo last_name: Shoji - first_name: Bhupendra V. full_name: Shravage, Bhupendra V. last_name: Shravage - first_name: Viji full_name: Shridhar, Viji last_name: Shridhar - first_name: Chih Wen full_name: Shu, Chih Wen last_name: Shu - first_name: Hong Bing full_name: Shu, Hong Bing last_name: Shu - first_name: Ke full_name: Shui, Ke last_name: Shui - first_name: Arvind K. full_name: Shukla, Arvind K. last_name: Shukla - first_name: Timothy E. full_name: Shutt, Timothy E. last_name: Shutt - first_name: Valentina full_name: Sica, Valentina last_name: Sica - first_name: Aleem full_name: Siddiqui, Aleem last_name: Siddiqui - first_name: Amanda full_name: Sierra, Amanda last_name: Sierra - first_name: Virginia full_name: Sierra-Torre, Virginia last_name: Sierra-Torre - first_name: Santiago full_name: Signorelli, Santiago last_name: Signorelli - first_name: Payel full_name: Sil, Payel last_name: Sil - first_name: Bruno J.De Andrade full_name: Silva, Bruno J.De Andrade last_name: Silva - first_name: Johnatas D. full_name: Silva, Johnatas D. last_name: Silva - first_name: Eduardo full_name: Silva-Pavez, Eduardo last_name: Silva-Pavez - first_name: Sandrine full_name: Silvente-Poirot, Sandrine last_name: Silvente-Poirot - first_name: Rachel E. full_name: Simmonds, Rachel E. last_name: Simmonds - first_name: Anna Katharina full_name: Simon, Anna Katharina last_name: Simon - first_name: Hans Uwe full_name: Simon, Hans Uwe last_name: Simon - first_name: Matias full_name: Simons, Matias last_name: Simons - first_name: Anurag full_name: Singh, Anurag last_name: Singh - first_name: Lalit P. full_name: Singh, Lalit P. last_name: Singh - first_name: Rajat full_name: Singh, Rajat last_name: Singh - first_name: Shivendra V. full_name: Singh, Shivendra V. last_name: Singh - first_name: Shrawan K. full_name: Singh, Shrawan K. last_name: Singh - first_name: Sudha B. full_name: Singh, Sudha B. last_name: Singh - first_name: Sunaina full_name: Singh, Sunaina last_name: Singh - first_name: Surinder Pal full_name: Singh, Surinder Pal last_name: Singh - first_name: Debasish full_name: Sinha, Debasish last_name: Sinha - first_name: Rohit Anthony full_name: Sinha, Rohit Anthony last_name: Sinha - first_name: Sangita full_name: Sinha, Sangita last_name: Sinha - first_name: Agnieszka full_name: Sirko, Agnieszka last_name: Sirko - first_name: Kapil full_name: Sirohi, Kapil last_name: Sirohi - first_name: Efthimios L. full_name: Sivridis, Efthimios L. last_name: Sivridis - first_name: Panagiotis full_name: Skendros, Panagiotis last_name: Skendros - first_name: Aleksandra full_name: Skirycz, Aleksandra last_name: Skirycz - first_name: Iva full_name: Slaninová, Iva last_name: Slaninová - first_name: Soraya S. full_name: Smaili, Soraya S. last_name: Smaili - first_name: Andrei full_name: Smertenko, Andrei last_name: Smertenko - first_name: Matthew D. full_name: Smith, Matthew D. last_name: Smith - first_name: Stefaan J. full_name: Soenen, Stefaan J. last_name: Soenen - first_name: Eun Jung full_name: Sohn, Eun Jung last_name: Sohn - first_name: Sophia P.M. full_name: Sok, Sophia P.M. last_name: Sok - first_name: Giancarlo full_name: Solaini, Giancarlo last_name: Solaini - first_name: Thierry full_name: Soldati, Thierry last_name: Soldati - first_name: Scott A. full_name: Soleimanpour, Scott A. last_name: Soleimanpour - first_name: Rosa M. full_name: Soler, Rosa M. last_name: Soler - first_name: Alexei full_name: Solovchenko, Alexei last_name: Solovchenko - first_name: Jason A. full_name: Somarelli, Jason A. last_name: Somarelli - first_name: Avinash full_name: Sonawane, Avinash last_name: Sonawane - first_name: Fuyong full_name: Song, Fuyong last_name: Song - first_name: Hyun Kyu full_name: Song, Hyun Kyu last_name: Song - first_name: Ju Xian full_name: Song, Ju Xian last_name: Song - first_name: Kunhua full_name: Song, Kunhua last_name: Song - first_name: Zhiyin full_name: Song, Zhiyin last_name: Song - first_name: Leandro R. full_name: Soria, Leandro R. last_name: Soria - first_name: Maurizio full_name: Sorice, Maurizio last_name: Sorice - first_name: Alexander A. full_name: Soukas, Alexander A. last_name: Soukas - first_name: Sandra Fausia full_name: Soukup, Sandra Fausia last_name: Soukup - first_name: Diana full_name: Sousa, Diana last_name: Sousa - first_name: Nadia full_name: Sousa, Nadia last_name: Sousa - first_name: Paul A. full_name: Spagnuolo, Paul A. last_name: Spagnuolo - 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Tong, Autophagy 17 (2021) 1–382. date_created: 2021-03-28T22:01:44Z date_published: 2021-02-08T00:00:00Z date_updated: 2023-10-16T09:43:56Z day: '08' department: - _id: JiFr - _id: CaHe doi: 10.1080/15548627.2020.1797280 external_id: isi: - '000636121800001' pmid: - '33634751' intvolume: ' 17' isi: 1 issue: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.1080/15548627.2020.1797280 month: '02' oa: 1 oa_version: Published Version page: 1-382 pmid: 1 publication: Autophagy publication_identifier: eissn: - 1554-8635 issn: - 1554-8627 publication_status: published publisher: Taylor & Francis quality_controlled: '1' scopus_import: '1' status: public title: Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 17 year: '2021' ... --- _id: '8742' abstract: - lang: eng text: We develop a version of Ekedahl’s geometric sieve for integral quadratic forms of rank at least five. As one ranges over the zeros of such quadratic forms, we use the sieve to compute the density of coprime values of polynomials, and furthermore, to address a question about local solubility in families of varieties parameterised by the zeros. article_processing_charge: No article_type: original author: - first_name: Timothy D full_name: Browning, Timothy D id: 35827D50-F248-11E8-B48F-1D18A9856A87 last_name: Browning orcid: 0000-0002-8314-0177 - first_name: Roger full_name: Heath-Brown, Roger last_name: Heath-Brown citation: ama: Browning TD, Heath-Brown R. The geometric sieve for quadrics. Forum Mathematicum. 2021;33(1):147-165. doi:10.1515/forum-2020-0074 apa: Browning, T. D., & Heath-Brown, R. (2021). The geometric sieve for quadrics. Forum Mathematicum. De Gruyter. https://doi.org/10.1515/forum-2020-0074 chicago: Browning, Timothy D, and Roger Heath-Brown. “The Geometric Sieve for Quadrics.” Forum Mathematicum. De Gruyter, 2021. https://doi.org/10.1515/forum-2020-0074. ieee: T. D. Browning and R. Heath-Brown, “The geometric sieve for quadrics,” Forum Mathematicum, vol. 33, no. 1. De Gruyter, pp. 147–165, 2021. ista: Browning TD, Heath-Brown R. 2021. The geometric sieve for quadrics. Forum Mathematicum. 33(1), 147–165. mla: Browning, Timothy D., and Roger Heath-Brown. “The Geometric Sieve for Quadrics.” Forum Mathematicum, vol. 33, no. 1, De Gruyter, 2021, pp. 147–65, doi:10.1515/forum-2020-0074. short: T.D. Browning, R. Heath-Brown, Forum Mathematicum 33 (2021) 147–165. date_created: 2020-11-08T23:01:25Z date_published: 2021-01-01T00:00:00Z date_updated: 2023-10-17T07:39:01Z day: '01' department: - _id: TiBr doi: 10.1515/forum-2020-0074 external_id: arxiv: - '2003.09593' isi: - '000604750900008' intvolume: ' 33' isi: 1 issue: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/2003.09593 month: '01' oa: 1 oa_version: Preprint page: 147-165 project: - _id: 26AEDAB2-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: P32428 name: New frontiers of the Manin conjecture publication: Forum Mathematicum publication_identifier: eissn: - 1435-5337 issn: - 0933-7741 publication_status: published publisher: De Gruyter quality_controlled: '1' scopus_import: '1' status: public title: The geometric sieve for quadrics type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 33 year: '2021' ... --- _id: '10035' abstract: - lang: eng text: 'Many security definitions come in two flavors: a stronger “adaptive” flavor, where the adversary can arbitrarily make various choices during the course of the attack, and a weaker “selective” flavor where the adversary must commit to some or all of their choices a-priori. For example, in the context of identity-based encryption, selective security requires the adversary to decide on the identity of the attacked party at the very beginning of the game whereas adaptive security allows the attacker to first see the master public key and some secret keys before making this choice. Often, it appears to be much easier to achieve selective security than it is to achieve adaptive security. A series of several recent works shows how to cleverly achieve adaptive security in several such scenarios including generalized selective decryption [Pan07][FJP15], constrained PRFs [FKPR14], and Yao’s garbled circuits [JW16]. Although the above works expressed vague intuition that they share a common technique, the connection was never made precise. In this work we present a new framework (published at Crypto ’17 [JKK+17a]) that connects all of these works and allows us to present them in a unified and simplified fashion. Having the framework in place, we show how to achieve adaptive security for proxy re-encryption schemes (published at PKC ’19 [FKKP19]) and provide the first adaptive security proofs for continuous group key agreement protocols (published at S&P ’21 [KPW+21]). Questioning optimality of our framework, we then show that currently used proof techniques cannot lead to significantly better security guarantees for "graph-building" games (published at TCC ’21 [KKPW21a]). These games cover generalized selective decryption, as well as the security of prominent constructions for constrained PRFs, continuous group key agreement, and proxy re-encryption. Finally, we revisit the adaptive security of Yao’s garbled circuits and extend the analysis of Jafargholi and Wichs in two directions: While they prove adaptive security only for a modified construction with increased online complexity, we provide the first positive results for the original construction by Yao (published at TCC ’21 [KKP21a]). On the negative side, we prove that the results of Jafargholi and Wichs are essentially optimal by showing that no black-box reduction can provide a significantly better security bound (published at Crypto ’21 [KKPW21c]).' acknowledgement: "I want to acknowledge the funding by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (682815 - TOCNeT).\r\n" alternative_title: - ISTA Thesis article_processing_charge: No author: - first_name: Karen full_name: Klein, Karen id: 3E83A2F8-F248-11E8-B48F-1D18A9856A87 last_name: Klein citation: ama: Klein K. On the adaptive security of graph-based games. 2021. doi:10.15479/at:ista:10035 apa: Klein, K. (2021). On the adaptive security of graph-based games. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:10035 chicago: Klein, Karen. “On the Adaptive Security of Graph-Based Games.” Institute of Science and Technology Austria, 2021. https://doi.org/10.15479/at:ista:10035. ieee: K. Klein, “On the adaptive security of graph-based games,” Institute of Science and Technology Austria, 2021. ista: Klein K. 2021. On the adaptive security of graph-based games. Institute of Science and Technology Austria. mla: Klein, Karen. On the Adaptive Security of Graph-Based Games. Institute of Science and Technology Austria, 2021, doi:10.15479/at:ista:10035. short: K. Klein, On the Adaptive Security of Graph-Based Games, Institute of Science and Technology Austria, 2021. date_created: 2021-09-23T07:31:44Z date_published: 2021-09-23T00:00:00Z date_updated: 2023-10-17T09:24:07Z day: '23' ddc: - '519' degree_awarded: PhD department: - _id: GradSch - _id: KrPi doi: 10.15479/at:ista:10035 ec_funded: 1 file: - access_level: open_access checksum: 73a44345c683e81f3e765efbf86fdcc5 content_type: application/pdf creator: cchlebak date_created: 2021-10-04T12:22:33Z date_updated: 2021-10-04T12:22:33Z file_id: '10082' file_name: thesis_pdfa.pdf file_size: 2104726 relation: main_file success: 1 - access_level: closed checksum: 7b80df30a0e686c3ef6a56d4e1c59e29 content_type: application/x-zip-compressed creator: cchlebak date_created: 2021-10-05T07:04:37Z date_updated: 2022-03-10T12:15:18Z file_id: '10085' file_name: thesis_final (1).zip file_size: 9538359 relation: source_file file_date_updated: 2022-03-10T12:15:18Z has_accepted_license: '1' language: - iso: eng month: '09' oa: 1 oa_version: Published Version page: '276' project: - _id: 258AA5B2-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '682815' name: Teaching Old Crypto New Tricks publication_identifier: issn: - 2663-337X publication_status: published publisher: Institute of Science and Technology Austria related_material: record: - id: '10044' relation: part_of_dissertation status: public - id: '10049' relation: part_of_dissertation status: public - id: '637' relation: part_of_dissertation status: public - id: '10041' relation: part_of_dissertation status: public - id: '6430' relation: part_of_dissertation status: public - id: '10048' relation: part_of_dissertation status: public status: public supervisor: - first_name: Krzysztof Z full_name: Pietrzak, Krzysztof Z id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87 last_name: Pietrzak orcid: 0000-0002-9139-1654 title: On the adaptive security of graph-based games tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: dissertation user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1 year: '2021' ... --- _id: '10410' abstract: - lang: eng text: The security of cryptographic primitives and protocols against adversaries that are allowed to make adaptive choices (e.g., which parties to corrupt or which queries to make) is notoriously difficult to establish. A broad theoretical framework was introduced by Jafargholi et al. [Crypto’17] for this purpose. In this paper we initiate the study of lower bounds on loss in adaptive security for certain cryptographic protocols considered in the framework. We prove lower bounds that almost match the upper bounds (proven using the framework) for proxy re-encryption, prefix-constrained PRFs and generalized selective decryption, a security game that captures the security of certain group messaging and broadcast encryption schemes. Those primitives have in common that their security game involves an underlying graph that can be adaptively built by the adversary. Some of our lower bounds only apply to a restricted class of black-box reductions which we term “oblivious” (the existing upper bounds are of this restricted type), some apply to the broader but still restricted class of non-rewinding reductions, while our lower bound for proxy re-encryption applies to all black-box reductions. The fact that some of our lower bounds seem to crucially rely on obliviousness or at least a non-rewinding reduction hints to the exciting possibility that the existing upper bounds can be improved by using more sophisticated reductions. Our main conceptual contribution is a two-player multi-stage game called the Builder-Pebbler Game. We can translate bounds on the winning probabilities for various instantiations of this game into cryptographic lower bounds for the above-mentioned primitives using oracle separation techniques. acknowledgement: C. Kamath—Supported by Azrieli International Postdoctoral Fellowship. Most of the work was done while the author was at Northeastern University and Charles University, funded by the IARPA grant IARPA/2019-19-020700009 and project PRIMUS/17/SCI/9, respectively. K. Klein—Supported in part by ERC CoG grant 724307. Most of the work was done while the author was at IST Austria funded by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (682815 - TOCNeT). K. Pietrzak—Funded by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (682815 - TOCNeT). alternative_title: - LNCS article_processing_charge: No author: - first_name: Chethan full_name: Kamath Hosdurg, Chethan id: 4BD3F30E-F248-11E8-B48F-1D18A9856A87 last_name: Kamath Hosdurg - first_name: Karen full_name: Klein, Karen id: 3E83A2F8-F248-11E8-B48F-1D18A9856A87 last_name: Klein - first_name: Krzysztof Z full_name: Pietrzak, Krzysztof Z id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87 last_name: Pietrzak orcid: 0000-0002-9139-1654 - first_name: Michael full_name: Walter, Michael id: 488F98B0-F248-11E8-B48F-1D18A9856A87 last_name: Walter orcid: 0000-0003-3186-2482 citation: ama: 'Kamath Hosdurg C, Klein K, Pietrzak KZ, Walter M. The cost of adaptivity in security games on graphs. In: 19th International Conference. Vol 13043. Springer Nature; 2021:550-581. doi:10.1007/978-3-030-90453-1_19' apa: 'Kamath Hosdurg, C., Klein, K., Pietrzak, K. Z., & Walter, M. (2021). The cost of adaptivity in security games on graphs. In 19th International Conference (Vol. 13043, pp. 550–581). Raleigh, NC, United States: Springer Nature. https://doi.org/10.1007/978-3-030-90453-1_19' chicago: Kamath Hosdurg, Chethan, Karen Klein, Krzysztof Z Pietrzak, and Michael Walter. “The Cost of Adaptivity in Security Games on Graphs.” In 19th International Conference, 13043:550–81. Springer Nature, 2021. https://doi.org/10.1007/978-3-030-90453-1_19. ieee: C. Kamath Hosdurg, K. Klein, K. Z. Pietrzak, and M. Walter, “The cost of adaptivity in security games on graphs,” in 19th International Conference, Raleigh, NC, United States, 2021, vol. 13043, pp. 550–581. ista: 'Kamath Hosdurg C, Klein K, Pietrzak KZ, Walter M. 2021. The cost of adaptivity in security games on graphs. 19th International Conference. TCC: Theory of Cryptography, LNCS, vol. 13043, 550–581.' mla: Kamath Hosdurg, Chethan, et al. “The Cost of Adaptivity in Security Games on Graphs.” 19th International Conference, vol. 13043, Springer Nature, 2021, pp. 550–81, doi:10.1007/978-3-030-90453-1_19. short: C. Kamath Hosdurg, K. Klein, K.Z. Pietrzak, M. Walter, in:, 19th International Conference, Springer Nature, 2021, pp. 550–581. conference: end_date: 2021-11-11 location: Raleigh, NC, United States name: 'TCC: Theory of Cryptography' start_date: 2021-11-08 date_created: 2021-12-05T23:01:43Z date_published: 2021-11-04T00:00:00Z date_updated: 2023-10-17T09:24:07Z day: '04' department: - _id: KrPi doi: 10.1007/978-3-030-90453-1_19 ec_funded: 1 external_id: isi: - '000728364000019' intvolume: ' 13043' isi: 1 language: - iso: eng main_file_link: - open_access: '1' url: https://ia.cr/2021/059 month: '11' oa: 1 oa_version: Preprint page: 550-581 project: - _id: 258AA5B2-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '682815' name: Teaching Old Crypto New Tricks publication: 19th International Conference publication_identifier: eissn: - 1611-3349 isbn: - 9-783-0309-0452-4 issn: - 0302-9743 publication_status: published publisher: Springer Nature quality_controlled: '1' related_material: record: - id: '10048' relation: earlier_version status: public scopus_import: '1' status: public title: The cost of adaptivity in security games on graphs type: conference user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8 volume: 13043 year: '2021' ... --- _id: '10048' abstract: - lang: eng text: "The security of cryptographic primitives and protocols against adversaries that are allowed to make adaptive choices (e.g., which parties to corrupt or which queries to make) is notoriously difficult to establish. A broad theoretical\r\nframework was introduced by Jafargholi et al. [Crypto’17] for this purpose. In this paper we initiate the study of lower bounds on loss in adaptive security for certain cryptographic protocols considered in the framework. We prove lower\r\nbounds that almost match the upper bounds (proven using the framework) for proxy re-encryption, prefix-constrained PRFs and generalized selective decryption, a security game that captures the security of certain group messaging and\r\nbroadcast encryption schemes. Those primitives have in common that their security game involves an underlying graph that can be adaptively built by the adversary. Some of our lower bounds only apply to a restricted class of black-box reductions which we term “oblivious” (the existing upper bounds are of this restricted type), some apply to the broader but still restricted class of non-rewinding reductions, while our lower bound for proxy re-encryption applies to all black-box reductions. The fact that some of our lower bounds seem to crucially rely on obliviousness or at least a non-rewinding reduction hints to the exciting possibility that the existing upper bounds can be improved by using more sophisticated reductions. Our main conceptual contribution is a two-player multi-stage game called the Builder-Pebbler Game. We can translate bounds on the winning probabilities for various instantiations of this game into cryptographic lower bounds for the above-mentioned primitives using oracle separation techniques.\r\n" article_processing_charge: No author: - first_name: Chethan full_name: Kamath Hosdurg, Chethan id: 4BD3F30E-F248-11E8-B48F-1D18A9856A87 last_name: Kamath Hosdurg - first_name: Karen full_name: Klein, Karen id: 3E83A2F8-F248-11E8-B48F-1D18A9856A87 last_name: Klein - first_name: Krzysztof Z full_name: Pietrzak, Krzysztof Z id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87 last_name: Pietrzak orcid: 0000-0002-9139-1654 - first_name: Michael full_name: Walter, Michael id: 488F98B0-F248-11E8-B48F-1D18A9856A87 last_name: Walter orcid: 0000-0003-3186-2482 citation: ama: 'Kamath Hosdurg C, Klein K, Pietrzak KZ, Walter M. The cost of adaptivity in security games on graphs. In: 19th Theory of Cryptography Conference 2021. International Association for Cryptologic Research; 2021.' apa: 'Kamath Hosdurg, C., Klein, K., Pietrzak, K. Z., & Walter, M. (2021). The cost of adaptivity in security games on graphs. In 19th Theory of Cryptography Conference 2021. Raleigh, NC, United States: International Association for Cryptologic Research.' chicago: Kamath Hosdurg, Chethan, Karen Klein, Krzysztof Z Pietrzak, and Michael Walter. “The Cost of Adaptivity in Security Games on Graphs.” In 19th Theory of Cryptography Conference 2021. International Association for Cryptologic Research, 2021. ieee: C. Kamath Hosdurg, K. Klein, K. Z. Pietrzak, and M. Walter, “The cost of adaptivity in security games on graphs,” in 19th Theory of Cryptography Conference 2021, Raleigh, NC, United States, 2021. ista: 'Kamath Hosdurg C, Klein K, Pietrzak KZ, Walter M. 2021. The cost of adaptivity in security games on graphs. 19th Theory of Cryptography Conference 2021. TCC: Theory of Cryptography Conference.' mla: Kamath Hosdurg, Chethan, et al. “The Cost of Adaptivity in Security Games on Graphs.” 19th Theory of Cryptography Conference 2021, International Association for Cryptologic Research, 2021. short: C. Kamath Hosdurg, K. Klein, K.Z. Pietrzak, M. Walter, in:, 19th Theory of Cryptography Conference 2021, International Association for Cryptologic Research, 2021. conference: end_date: 2021-11-11 location: Raleigh, NC, United States name: 'TCC: Theory of Cryptography Conference' start_date: 2021-11-08 date_created: 2021-09-27T12:52:05Z date_published: 2021-07-08T00:00:00Z date_updated: 2023-10-17T09:24:08Z day: '08' department: - _id: KrPi language: - iso: eng main_file_link: - open_access: '1' url: https://ia.cr/2021/059 month: '07' oa: 1 oa_version: Preprint publication: 19th Theory of Cryptography Conference 2021 publication_status: published publisher: International Association for Cryptologic Research quality_controlled: '1' related_material: record: - id: '10410' relation: later_version status: public - id: '10035' relation: dissertation_contains status: public status: public title: The cost of adaptivity in security games on graphs type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2021' ... --- _id: '10738' abstract: - lang: eng text: We prove an adiabatic theorem for the Landau–Pekar equations. This allows us to derive new results on the accuracy of their use as effective equations for the time evolution generated by the Fröhlich Hamiltonian with large coupling constant α. In particular, we show that the time evolution of Pekar product states with coherent phonon field and the electron being trapped by the phonons is well approximated by the Landau–Pekar equations until times short compared to α2. acknowledgement: "N. L. and R. S. gratefully acknowledge financial support by the European Research Council\r\n(ERC) under the European Union’s Horizon 2020 research and innovation programme (grant\r\nagreement No 694227). B. S. acknowledges support from the Swiss National Science Foundation (grant 200020_172623) and from the NCCR SwissMAP. N. L. would like to thank\r\nAndreas Deuchert and David Mitrouskas for interesting discussions. B. S. and R. S. would\r\nlike to thank Rupert Frank for stimulating discussions about the time-evolution of a polaron.\r\n" article_processing_charge: No article_type: original author: - first_name: Nikolai K full_name: Leopold, Nikolai K id: 4BC40BEC-F248-11E8-B48F-1D18A9856A87 last_name: Leopold orcid: 0000-0002-0495-6822 - first_name: Simone Anna Elvira full_name: Rademacher, Simone Anna Elvira id: 856966FE-A408-11E9-977E-802DE6697425 last_name: Rademacher orcid: 0000-0001-5059-4466 - first_name: Benjamin full_name: Schlein, Benjamin last_name: Schlein - first_name: Robert full_name: Seiringer, Robert id: 4AFD0470-F248-11E8-B48F-1D18A9856A87 last_name: Seiringer orcid: 0000-0002-6781-0521 citation: ama: 'Leopold NK, Rademacher SAE, Schlein B, Seiringer R. The Landau–Pekar equations: Adiabatic theorem and accuracy. Analysis and PDE. 2021;14(7):2079-2100. doi:10.2140/APDE.2021.14.2079' apa: 'Leopold, N. K., Rademacher, S. A. E., Schlein, B., & Seiringer, R. (2021). The Landau–Pekar equations: Adiabatic theorem and accuracy. Analysis and PDE. Mathematical Sciences Publishers. https://doi.org/10.2140/APDE.2021.14.2079' chicago: 'Leopold, Nikolai K, Simone Anna Elvira Rademacher, Benjamin Schlein, and Robert Seiringer. “ The Landau–Pekar Equations: Adiabatic Theorem and Accuracy.” Analysis and PDE. Mathematical Sciences Publishers, 2021. https://doi.org/10.2140/APDE.2021.14.2079.' ieee: 'N. K. Leopold, S. A. E. Rademacher, B. Schlein, and R. Seiringer, “ The Landau–Pekar equations: Adiabatic theorem and accuracy,” Analysis and PDE, vol. 14, no. 7. Mathematical Sciences Publishers, pp. 2079–2100, 2021.' ista: 'Leopold NK, Rademacher SAE, Schlein B, Seiringer R. 2021. The Landau–Pekar equations: Adiabatic theorem and accuracy. Analysis and PDE. 14(7), 2079–2100.' mla: 'Leopold, Nikolai K., et al. “ The Landau–Pekar Equations: Adiabatic Theorem and Accuracy.” Analysis and PDE, vol. 14, no. 7, Mathematical Sciences Publishers, 2021, pp. 2079–100, doi:10.2140/APDE.2021.14.2079.' short: N.K. Leopold, S.A.E. Rademacher, B. Schlein, R. Seiringer, Analysis and PDE 14 (2021) 2079–2100. date_created: 2022-02-06T23:01:33Z date_published: 2021-11-10T00:00:00Z date_updated: 2023-10-17T11:26:45Z day: '10' department: - _id: RoSe doi: 10.2140/APDE.2021.14.2079 ec_funded: 1 external_id: arxiv: - '1904.12532' isi: - '000733976600004' intvolume: ' 14' isi: 1 issue: '7' language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/1904.12532 month: '11' oa: 1 oa_version: Preprint page: 2079-2100 project: - _id: 25C6DC12-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '694227' name: Analysis of quantum many-body systems publication: Analysis and PDE publication_identifier: eissn: - 1948-206X issn: - 2157-5045 publication_status: published publisher: Mathematical Sciences Publishers quality_controlled: '1' scopus_import: '1' status: public title: ' The Landau–Pekar equations: Adiabatic theorem and accuracy' type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 14 year: '2021' ... --- _id: '10429' abstract: - lang: eng text: "The scalability of concurrent data structures and distributed algorithms strongly depends on\r\nreducing the contention for shared resources and the costs of synchronization and communication. We show how such cost reductions can be attained by relaxing the strict consistency conditions required by sequential implementations. In the first part of the thesis, we consider relaxation in the context of concurrent data structures. Specifically, in data structures \r\nsuch as priority queues, imposing strong semantics renders scalability impossible, since a correct implementation of the remove operation should return only the element with highest priority. Intuitively, attempting to invoke remove operations concurrently creates a race condition. This bottleneck can be circumvented by relaxing semantics of the affected data structure, thus allowing removal of the elements which are no longer required to have the highest priority. We prove that the randomized implementations of relaxed data structures provide provable guarantees on the priority of the removed elements even under concurrency. Additionally, we show that in some cases the relaxed data structures can be used to scale the classical algorithms which are usually implemented with the exact ones. In the second part, we study parallel variants of the stochastic gradient descent (SGD) algorithm, which distribute computation among the multiple processors, thus reducing the running time. Unfortunately, in order for standard parallel SGD to succeed, each processor has to maintain a local copy of the necessary model parameter, which is identical to the local copies of other processors; the overheads from this perfect consistency in terms of communication and synchronization can negate the speedup gained by distributing the computation. We show that the consistency conditions required by SGD can be relaxed, allowing the algorithm to be more flexible in terms of tolerating quantized communication, asynchrony, or even crash faults, while its convergence remains asymptotically the same." alternative_title: - ISTA Thesis article_processing_charge: No author: - first_name: Giorgi full_name: Nadiradze, Giorgi id: 3279A00C-F248-11E8-B48F-1D18A9856A87 last_name: Nadiradze orcid: 0000-0001-5634-0731 citation: ama: Nadiradze G. On achieving scalability through relaxation. 2021. doi:10.15479/at:ista:10429 apa: Nadiradze, G. (2021). On achieving scalability through relaxation. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:10429 chicago: Nadiradze, Giorgi. “On Achieving Scalability through Relaxation.” Institute of Science and Technology Austria, 2021. https://doi.org/10.15479/at:ista:10429. ieee: G. Nadiradze, “On achieving scalability through relaxation,” Institute of Science and Technology Austria, 2021. ista: Nadiradze G. 2021. On achieving scalability through relaxation. Institute of Science and Technology Austria. mla: Nadiradze, Giorgi. On Achieving Scalability through Relaxation. Institute of Science and Technology Austria, 2021, doi:10.15479/at:ista:10429. short: G. Nadiradze, On Achieving Scalability through Relaxation, Institute of Science and Technology Austria, 2021. date_created: 2021-12-08T21:52:28Z date_published: 2021-12-09T00:00:00Z date_updated: 2023-10-17T11:48:55Z day: '09' ddc: - '000' degree_awarded: PhD department: - _id: GradSch - _id: DaAl doi: 10.15479/at:ista:10429 ec_funded: 1 file: - access_level: open_access checksum: 6bf14e9a523387328f016c0689f5e10e content_type: application/pdf creator: gnadirad date_created: 2021-12-09T17:47:49Z date_updated: 2021-12-09T17:47:49Z file_id: '10436' file_name: Thesis_Final_09_12_2021.pdf file_size: 2370859 relation: main_file success: 1 - access_level: closed checksum: 914d6c5ca86bd0add471971a8f4c4341 content_type: application/zip creator: gnadirad date_created: 2021-12-09T17:47:49Z date_updated: 2022-03-28T12:55:12Z file_id: '10437' file_name: Thesis_Final_09_12_2021.zip file_size: 2596924 relation: source_file file_date_updated: 2022-03-28T12:55:12Z has_accepted_license: '1' language: - iso: eng month: '12' oa: 1 oa_version: Published Version page: '132' project: - _id: 268A44D6-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '805223' name: Elastic Coordination for Scalable Machine Learning publication_identifier: issn: - 2663-337X publication_status: published publisher: Institute of Science and Technology Austria related_material: record: - id: '10432' relation: part_of_dissertation status: public - id: '6673' relation: part_of_dissertation status: public - id: '5965' relation: part_of_dissertation status: public - id: '10435' relation: part_of_dissertation status: public status: public supervisor: - first_name: Dan-Adrian full_name: Alistarh, Dan-Adrian id: 4A899BFC-F248-11E8-B48F-1D18A9856A87 last_name: Alistarh orcid: 0000-0003-3650-940X title: On achieving scalability through relaxation type: dissertation user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1 year: '2021' ... --- _id: '10435' abstract: - lang: eng text: Decentralized optimization is emerging as a viable alternative for scalable distributed machine learning, but also introduces new challenges in terms of synchronization costs. To this end, several communication-reduction techniques, such as non-blocking communication, quantization, and local steps, have been explored in the decentralized setting. Due to the complexity of analyzing optimization in such a relaxed setting, this line of work often assumes \emph{global} communication rounds, which require additional synchronization. In this paper, we consider decentralized optimization in the simpler, but harder to analyze, \emph{asynchronous gossip} model, in which communication occurs in discrete, randomly chosen pairings among nodes. Perhaps surprisingly, we show that a variant of SGD called \emph{SwarmSGD} still converges in this setting, even if \emph{non-blocking communication}, \emph{quantization}, and \emph{local steps} are all applied \emph{in conjunction}, and even if the node data distributions and underlying graph topology are both \emph{heterogenous}. Our analysis is based on a new connection with multi-dimensional load-balancing processes. We implement this algorithm and deploy it in a super-computing environment, showing that it can outperform previous decentralized methods in terms of end-to-end training time, and that it can even rival carefully-tuned large-batch SGD for certain tasks. acknowledgement: "We gratefully acknowledge funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 805223 ScaleML). PD partly conducted this work while at IST Austria and was supported by the European Union’s Horizon 2020 programme under the Marie Skłodowska-Curie grant agreement No. 754411. SL was funded in part by European Research Council (ERC) under the European Union’s Horizon 2020 programme (grant agreement DAPP, No. 678880, and EPiGRAM-HS, No. 801039).\r\n" article_processing_charge: No author: - first_name: Giorgi full_name: Nadiradze, Giorgi id: 3279A00C-F248-11E8-B48F-1D18A9856A87 last_name: Nadiradze orcid: 0000-0001-5634-0731 - first_name: Amirmojtaba full_name: Sabour, Amirmojtaba id: bcc145fd-e77f-11ea-ae8b-80d661dbff67 last_name: Sabour - first_name: Peter full_name: Davies, Peter id: 11396234-BB50-11E9-B24C-90FCE5697425 last_name: Davies orcid: 0000-0002-5646-9524 - first_name: Shigang full_name: Li, Shigang last_name: Li - first_name: Dan-Adrian full_name: Alistarh, Dan-Adrian id: 4A899BFC-F248-11E8-B48F-1D18A9856A87 last_name: Alistarh orcid: 0000-0003-3650-940X citation: ama: 'Nadiradze G, Sabour A, Davies P, Li S, Alistarh D-A. Asynchronous decentralized SGD with quantized and local updates. In: 35th Conference on Neural Information Processing Systems. Neural Information Processing Systems Foundation; 2021.' apa: 'Nadiradze, G., Sabour, A., Davies, P., Li, S., & Alistarh, D.-A. (2021). Asynchronous decentralized SGD with quantized and local updates. In 35th Conference on Neural Information Processing Systems. Sydney, Australia: Neural Information Processing Systems Foundation.' chicago: Nadiradze, Giorgi, Amirmojtaba Sabour, Peter Davies, Shigang Li, and Dan-Adrian Alistarh. “Asynchronous Decentralized SGD with Quantized and Local Updates.” In 35th Conference on Neural Information Processing Systems. Neural Information Processing Systems Foundation, 2021. ieee: G. Nadiradze, A. Sabour, P. Davies, S. Li, and D.-A. Alistarh, “Asynchronous decentralized SGD with quantized and local updates,” in 35th Conference on Neural Information Processing Systems, Sydney, Australia, 2021. ista: 'Nadiradze G, Sabour A, Davies P, Li S, Alistarh D-A. 2021. Asynchronous decentralized SGD with quantized and local updates. 35th Conference on Neural Information Processing Systems. NeurIPS: Neural Information Processing Systems.' mla: Nadiradze, Giorgi, et al. “Asynchronous Decentralized SGD with Quantized and Local Updates.” 35th Conference on Neural Information Processing Systems, Neural Information Processing Systems Foundation, 2021. short: G. Nadiradze, A. Sabour, P. Davies, S. Li, D.-A. Alistarh, in:, 35th Conference on Neural Information Processing Systems, Neural Information Processing Systems Foundation, 2021. conference: end_date: 2021-12-14 location: Sydney, Australia name: 'NeurIPS: Neural Information Processing Systems' start_date: 2021-12-06 date_created: 2021-12-09T10:59:12Z date_published: 2021-12-01T00:00:00Z date_updated: 2023-10-17T11:48:56Z day: '01' department: - _id: DaAl ec_funded: 1 external_id: arxiv: - '1910.12308' language: - iso: eng main_file_link: - open_access: '1' url: https://papers.nips.cc/paper/2021/hash/362c99307cdc3f2d8b410652386a9dd1-Abstract.html month: '12' oa: 1 oa_version: Published Version project: - _id: 260C2330-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '754411' name: ISTplus - Postdoctoral Fellowships - _id: 268A44D6-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '805223' name: Elastic Coordination for Scalable Machine Learning publication: 35th Conference on Neural Information Processing Systems publication_status: published publisher: Neural Information Processing Systems Foundation quality_controlled: '1' related_material: record: - id: '10429' relation: dissertation_contains status: public status: public title: Asynchronous decentralized SGD with quantized and local updates type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2021' ... --- _id: '10593' abstract: - lang: eng text: 'We study the problem of estimating a rank-$1$ signal in the presence of rotationally invariant noise-a class of perturbations more general than Gaussian noise. Principal Component Analysis (PCA) provides a natural estimator, and sharp results on its performance have been obtained in the high-dimensional regime. Recently, an Approximate Message Passing (AMP) algorithm has been proposed as an alternative estimator with the potential to improve the accuracy of PCA. However, the existing analysis of AMP requires an initialization that is both correlated with the signal and independent of the noise, which is often unrealistic in practice. In this work, we combine the two methods, and propose to initialize AMP with PCA. Our main result is a rigorous asymptotic characterization of the performance of this estimator. Both the AMP algorithm and its analysis differ from those previously derived in the Gaussian setting: at every iteration, our AMP algorithm requires a specific term to account for PCA initialization, while in the Gaussian case, PCA initialization affects only the first iteration of AMP. The proof is based on a two-phase artificial AMP that first approximates the PCA estimator and then mimics the true AMP. Our numerical simulations show an excellent agreement between AMP results and theoretical predictions, and suggest an interesting open direction on achieving Bayes-optimal performance.' acknowledgement: "M. Mondelli would like to thank László Erdős for helpful discussions. M. Mondelli was partially supported by the 2019 Lopez-Loreta Prize. R. Venkataramanan was partially supported by the Alan Turing Institute under the EPSRC grant EP/N510129/1.\r\n" article_processing_charge: No author: - first_name: Marco full_name: Mondelli, Marco id: 27EB676C-8706-11E9-9510-7717E6697425 last_name: Mondelli orcid: 0000-0002-3242-7020 - first_name: Ramji full_name: Venkataramanan, Ramji last_name: Venkataramanan citation: ama: 'Mondelli M, Venkataramanan R. PCA initialization for approximate message passing in rotationally invariant models. In: 35th Conference on Neural Information Processing Systems. Vol 35. Neural Information Processing Systems Foundation; 2021:29616-29629.' apa: 'Mondelli, M., & Venkataramanan, R. (2021). PCA initialization for approximate message passing in rotationally invariant models. In 35th Conference on Neural Information Processing Systems (Vol. 35, pp. 29616–29629). Virtual: Neural Information Processing Systems Foundation.' chicago: Mondelli, Marco, and Ramji Venkataramanan. “PCA Initialization for Approximate Message Passing in Rotationally Invariant Models.” In 35th Conference on Neural Information Processing Systems, 35:29616–29. Neural Information Processing Systems Foundation, 2021. ieee: M. Mondelli and R. Venkataramanan, “PCA initialization for approximate message passing in rotationally invariant models,” in 35th Conference on Neural Information Processing Systems, Virtual, 2021, vol. 35, pp. 29616–29629. ista: 'Mondelli M, Venkataramanan R. 2021. PCA initialization for approximate message passing in rotationally invariant models. 35th Conference on Neural Information Processing Systems. NeurIPS: Neural Information Processing Systems vol. 35, 29616–29629.' mla: Mondelli, Marco, and Ramji Venkataramanan. “PCA Initialization for Approximate Message Passing in Rotationally Invariant Models.” 35th Conference on Neural Information Processing Systems, vol. 35, Neural Information Processing Systems Foundation, 2021, pp. 29616–29. short: M. Mondelli, R. Venkataramanan, in:, 35th Conference on Neural Information Processing Systems, Neural Information Processing Systems Foundation, 2021, pp. 29616–29629. conference: end_date: 2021-12-14 location: Virtual name: 'NeurIPS: Neural Information Processing Systems' start_date: 2021-12-06 date_created: 2022-01-03T10:50:02Z date_published: 2021-12-01T00:00:00Z date_updated: 2023-10-17T11:48:23Z day: '01' department: - _id: MaMo external_id: arxiv: - '2106.02356' intvolume: ' 35' language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/2106.02356 month: '12' oa: 1 oa_version: Preprint page: 29616-29629 project: - _id: 059876FA-7A3F-11EA-A408-12923DDC885E name: Prix Lopez-Loretta 2019 - Marco Mondelli publication: 35th Conference on Neural Information Processing Systems publication_identifier: isbn: - '9781713845393' issn: - 1049-5258 publication_status: published publisher: Neural Information Processing Systems Foundation quality_controlled: '1' scopus_import: '1' status: public title: PCA initialization for approximate message passing in rotationally invariant models type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 35 year: '2021' ... --- _id: '10594' abstract: - lang: eng text: 'The question of how and why the phenomenon of mode connectivity occurs in training deep neural networks has gained remarkable attention in the research community. From a theoretical perspective, two possible explanations have been proposed: (i) the loss function has connected sublevel sets, and (ii) the solutions found by stochastic gradient descent are dropout stable. While these explanations provide insights into the phenomenon, their assumptions are not always satisfied in practice. In particular, the first approach requires the network to have one layer with order of N neurons (N being the number of training samples), while the second one requires the loss to be almost invariant after removing half of the neurons at each layer (up to some rescaling of the remaining ones). In this work, we improve both conditions by exploiting the quality of the features at every intermediate layer together with a milder over-parameterization condition. More specifically, we show that: (i) under generic assumptions on the features of intermediate layers, it suffices that the last two hidden layers have order of N−−√ neurons, and (ii) if subsets of features at each layer are linearly separable, then no over-parameterization is needed to show the connectivity. Our experiments confirm that the proposed condition ensures the connectivity of solutions found by stochastic gradient descent, even in settings where the previous requirements do not hold.' acknowledgement: MM was partially supported by the 2019 Lopez-Loreta Prize. QN and PB acknowledge support from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement no 757983). article_processing_charge: No author: - first_name: Quynh full_name: Nguyen, Quynh last_name: Nguyen - first_name: Pierre full_name: Bréchet, Pierre last_name: Bréchet - first_name: Marco full_name: Mondelli, Marco id: 27EB676C-8706-11E9-9510-7717E6697425 last_name: Mondelli orcid: 0000-0002-3242-7020 citation: ama: 'Nguyen Q, Bréchet P, Mondelli M. When are solutions connected in deep networks? In: 35th Conference on Neural Information Processing Systems. Vol 35. Neural Information Processing Systems Foundation; 2021.' apa: 'Nguyen, Q., Bréchet, P., & Mondelli, M. (2021). When are solutions connected in deep networks? In 35th Conference on Neural Information Processing Systems (Vol. 35). Virtual: Neural Information Processing Systems Foundation.' chicago: Nguyen, Quynh, Pierre Bréchet, and Marco Mondelli. “When Are Solutions Connected in Deep Networks?” In 35th Conference on Neural Information Processing Systems, Vol. 35. Neural Information Processing Systems Foundation, 2021. ieee: Q. Nguyen, P. Bréchet, and M. Mondelli, “When are solutions connected in deep networks?,” in 35th Conference on Neural Information Processing Systems, Virtual, 2021, vol. 35. ista: Nguyen Q, Bréchet P, Mondelli M. 2021. When are solutions connected in deep networks? 35th Conference on Neural Information Processing Systems. 35th Conference on Neural Information Processing Systems vol. 35. mla: Nguyen, Quynh, et al. “When Are Solutions Connected in Deep Networks?” 35th Conference on Neural Information Processing Systems, vol. 35, Neural Information Processing Systems Foundation, 2021. short: Q. Nguyen, P. Bréchet, M. Mondelli, in:, 35th Conference on Neural Information Processing Systems, Neural Information Processing Systems Foundation, 2021. conference: end_date: 2021-12-14 location: Virtual name: 35th Conference on Neural Information Processing Systems start_date: 2021-12-06 date_created: 2022-01-03T10:56:20Z date_published: 2021-12-01T00:00:00Z date_updated: 2023-10-17T11:48:40Z day: '01' department: - _id: MaMo external_id: arxiv: - '2102.09671' intvolume: ' 35' language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/2102.09671 month: '12' oa: 1 oa_version: Preprint project: - _id: 059876FA-7A3F-11EA-A408-12923DDC885E name: Prix Lopez-Loretta 2019 - Marco Mondelli publication: 35th Conference on Neural Information Processing Systems publication_identifier: isbn: - '9781713845393' issn: - 1049-5258 publication_status: published publisher: Neural Information Processing Systems Foundation quality_controlled: '1' status: public title: When are solutions connected in deep networks? type: conference user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 35 year: '2021' ... --- _id: '9815' abstract: - lang: eng text: The quantum bits (qubits) on which superconducting quantum computers are based have energy scales corresponding to photons with GHz frequencies. The energy of photons in the gigahertz domain is too low to allow transmission through the noisy room-temperature environment, where the signal would be lost in thermal noise. Optical photons, on the other hand, have much higher energies, and signals can be detected using highly efficient single-photon detectors. Transduction from microwave to optical frequencies is therefore a potential enabling technology for quantum devices. However, in such a device the optical pump can be a source of thermal noise and thus degrade the fidelity; the similarity of input microwave state to the output optical state. In order to investigate the magnitude of this effect we model the sub-Kelvin thermal behavior of an electro-optic transducer based on a lithium niobate whispering gallery mode resonator. We find that there is an optimum power level for a continuous pump, whilst pulsed operation of the pump increases the fidelity of the conversion. acknowledgement: NJL is supported by the MBIE Endeavour Fund (UOOX1805) and GL is by the Julius von Haast Fellowship of New Zealand. SM acknowledges stimulating discussions with T M Jensen. article_number: '045005' article_processing_charge: Yes article_type: original author: - first_name: Sonia full_name: Mobassem, Sonia last_name: Mobassem - first_name: Nicholas J. full_name: Lambert, Nicholas J. last_name: Lambert - first_name: Alfredo R full_name: Rueda Sanchez, Alfredo R id: 3B82B0F8-F248-11E8-B48F-1D18A9856A87 last_name: Rueda Sanchez orcid: 0000-0001-6249-5860 - first_name: Johannes M full_name: Fink, Johannes M id: 4B591CBA-F248-11E8-B48F-1D18A9856A87 last_name: Fink orcid: 0000-0001-8112-028X - first_name: Gerd full_name: Leuchs, Gerd last_name: Leuchs - first_name: Harald G.L. full_name: Schwefel, Harald G.L. last_name: Schwefel citation: ama: Mobassem S, Lambert NJ, Rueda Sanchez AR, Fink JM, Leuchs G, Schwefel HGL. Thermal noise in electro-optic devices at cryogenic temperatures. Quantum Science and Technology. 2021;6(4). doi:10.1088/2058-9565/ac0f36 apa: Mobassem, S., Lambert, N. J., Rueda Sanchez, A. R., Fink, J. M., Leuchs, G., & Schwefel, H. G. L. (2021). Thermal noise in electro-optic devices at cryogenic temperatures. Quantum Science and Technology. IOP Publishing. https://doi.org/10.1088/2058-9565/ac0f36 chicago: Mobassem, Sonia, Nicholas J. Lambert, Alfredo R Rueda Sanchez, Johannes M Fink, Gerd Leuchs, and Harald G.L. Schwefel. “Thermal Noise in Electro-Optic Devices at Cryogenic Temperatures.” Quantum Science and Technology. IOP Publishing, 2021. https://doi.org/10.1088/2058-9565/ac0f36. ieee: S. Mobassem, N. J. Lambert, A. R. Rueda Sanchez, J. M. Fink, G. Leuchs, and H. G. L. Schwefel, “Thermal noise in electro-optic devices at cryogenic temperatures,” Quantum Science and Technology, vol. 6, no. 4. IOP Publishing, 2021. ista: Mobassem S, Lambert NJ, Rueda Sanchez AR, Fink JM, Leuchs G, Schwefel HGL. 2021. Thermal noise in electro-optic devices at cryogenic temperatures. Quantum Science and Technology. 6(4), 045005. mla: Mobassem, Sonia, et al. “Thermal Noise in Electro-Optic Devices at Cryogenic Temperatures.” Quantum Science and Technology, vol. 6, no. 4, 045005, IOP Publishing, 2021, doi:10.1088/2058-9565/ac0f36. short: S. Mobassem, N.J. Lambert, A.R. Rueda Sanchez, J.M. Fink, G. Leuchs, H.G.L. Schwefel, Quantum Science and Technology 6 (2021). date_created: 2021-08-08T22:01:25Z date_published: 2021-07-15T00:00:00Z date_updated: 2023-10-17T12:54:54Z day: '15' ddc: - '530' department: - _id: JoFi doi: 10.1088/2058-9565/ac0f36 external_id: arxiv: - '2008.08764' isi: - '000673081500001' file: - access_level: open_access checksum: b15c2c228487a75002c3b52d56f23d5c content_type: application/pdf creator: cchlebak date_created: 2021-08-09T12:23:13Z date_updated: 2021-08-09T12:23:13Z file_id: '9836' file_name: 2021_QuantumScienceTechnology_Mobassem.pdf file_size: 2366118 relation: main_file file_date_updated: 2021-08-09T12:23:13Z has_accepted_license: '1' intvolume: ' 6' isi: 1 issue: '4' language: - iso: eng month: '07' oa: 1 oa_version: Published Version publication: Quantum Science and Technology publication_identifier: eissn: - 2058-9565 publication_status: published publisher: IOP Publishing quality_controlled: '1' scopus_import: '1' status: public title: Thermal noise in electro-optic devices at cryogenic temperatures tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 6 year: '2021' ... --- _id: '9978' abstract: - lang: eng text: Redox mediators could catalyse otherwise slow and energy-inefficient cycling of Li-S and Li-O 2 batteries by shuttling electrons/holes between the electrode and the solid insulating storage materials. For mediators to work efficiently they need to oxidize the solid with fast kinetics yet the lowest possible overpotential. Here, we found that when the redox potentials of mediators are tuned via, e.g., Li + concentration in the electrolyte, they exhibit distinct threshold potentials, where the kinetics accelerate several-fold within a range as small as 10 mV. This phenomenon is independent of types of mediators and electrolyte. The acceleration originates from the overpotentials required to activate fast Li + /e – extraction and the following chemical step at specific abundant surface facets. Efficient redox catalysis at insulating solids requires therefore carefully considering the surface conditions of the storage materials and electrolyte-dependent redox potentials, which may be tuned by salt concentrations or solvents. acknowledgement: 'This work was financially supported by the National Natural Science Foundation of China (51773092, 21975124, 11874254, 51802187, U2030206). S.A.F. is indebted to IST Austria for support. ' article_processing_charge: No author: - first_name: Deqing full_name: Cao, Deqing last_name: Cao - first_name: Xiaoxiao full_name: Shen, Xiaoxiao last_name: Shen - first_name: Aiping full_name: Wang, Aiping last_name: Wang - first_name: Fengjiao full_name: Yu, Fengjiao last_name: Yu - first_name: Yuping full_name: Wu, Yuping last_name: Wu - first_name: Siqi full_name: Shi, Siqi last_name: Shi - first_name: Stefan Alexander full_name: Freunberger, Stefan Alexander id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425 last_name: Freunberger orcid: 0000-0003-2902-5319 - first_name: Yuhui full_name: Chen, Yuhui last_name: Chen citation: ama: Cao D, Shen X, Wang A, et al. Sharp kinetic acceleration potentials during mediated redox catalysis of insulators. Research Square. doi:10.21203/rs.3.rs-750965/v1 apa: Cao, D., Shen, X., Wang, A., Yu, F., Wu, Y., Shi, S., … Chen, Y. (n.d.). Sharp kinetic acceleration potentials during mediated redox catalysis of insulators. Research Square. Research Square. https://doi.org/10.21203/rs.3.rs-750965/v1 chicago: Cao, Deqing, Xiaoxiao Shen, Aiping Wang, Fengjiao Yu, Yuping Wu, Siqi Shi, Stefan Alexander Freunberger, and Yuhui Chen. “Sharp Kinetic Acceleration Potentials during Mediated Redox Catalysis of Insulators.” Research Square. Research Square, n.d. https://doi.org/10.21203/rs.3.rs-750965/v1. ieee: D. Cao et al., “Sharp kinetic acceleration potentials during mediated redox catalysis of insulators,” Research Square. Research Square. ista: Cao D, Shen X, Wang A, Yu F, Wu Y, Shi S, Freunberger SA, Chen Y. Sharp kinetic acceleration potentials during mediated redox catalysis of insulators. Research Square, 10.21203/rs.3.rs-750965/v1. mla: Cao, Deqing, et al. “Sharp Kinetic Acceleration Potentials during Mediated Redox Catalysis of Insulators.” Research Square, Research Square, doi:10.21203/rs.3.rs-750965/v1. short: D. Cao, X. Shen, A. Wang, F. Yu, Y. Wu, S. Shi, S.A. Freunberger, Y. Chen, Research Square (n.d.). date_created: 2021-08-31T12:54:16Z date_published: 2021-08-18T00:00:00Z date_updated: 2023-10-17T13:06:29Z day: '18' ddc: - '541' department: - _id: StFr doi: 10.21203/rs.3.rs-750965/v1 file: - access_level: open_access checksum: 1878e91c29d5769ed5a827b0b7addf00 content_type: application/pdf creator: cchlebak date_created: 2021-08-31T14:02:19Z date_updated: 2021-08-31T14:02:19Z file_id: '9979' file_name: 2021_ResearchSquare_Cao.pdf file_size: 1019662 relation: main_file success: 1 file_date_updated: 2021-08-31T14:02:19Z has_accepted_license: '1' keyword: - Catalysis - Energy engineering - Materials theory and modeling language: - iso: eng month: '08' oa: 1 oa_version: Preprint page: '21' publication: Research Square publication_identifier: eissn: - 2693-5015 publication_status: submitted publisher: Research Square related_material: record: - id: '10813' relation: later_version status: public status: public title: Sharp kinetic acceleration potentials during mediated redox catalysis of insulators tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: preprint user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2021' ... --- _id: '8730' abstract: - lang: eng text: P-glycoprotein (ABCB1) and breast cancer resistance protein (ABCG2) restrict at the blood–brain barrier (BBB) the brain distribution of the majority of currently known molecularly targeted anticancer drugs. To improve brain delivery of dual ABCB1/ABCG2 substrates, both ABCB1 and ABCG2 need to be inhibited simultaneously at the BBB. We examined the feasibility of simultaneous ABCB1/ABCG2 inhibition with i.v. co-infusion of erlotinib and tariquidar by studying brain distribution of the model ABCB1/ABCG2 substrate [11C]erlotinib in mice and rhesus macaques with PET. Tolerability of the erlotinib/tariquidar combination was assessed in human embryonic stem cell-derived cerebral organoids. In mice and macaques, baseline brain distribution of [11C]erlotinib was low (brain distribution volume, VT,brain < 0.3 mL/cm3). Co-infusion of erlotinib and tariquidar increased VT,brain in mice by 3.0-fold and in macaques by 3.4- to 5.0-fold, while infusion of erlotinib alone or tariquidar alone led to less pronounced VT,brain increases in both species. Treatment of cerebral organoids with erlotinib/tariquidar led to an induction of Caspase-3-dependent apoptosis. Co-infusion of erlotinib/tariquidar may potentially allow for complete ABCB1/ABCG2 inhibition at the BBB, while simultaneously achieving brain-targeted EGFR inhibition. Our protocol may be applicable to enhance brain delivery of molecularly targeted anticancer drugs for a more effective treatment of brain tumors. article_processing_charge: No article_type: original author: - first_name: N full_name: Tournier, N last_name: Tournier - first_name: S full_name: Goutal, S last_name: Goutal - first_name: S full_name: Mairinger, S last_name: Mairinger - first_name: IH full_name: Lozano, IH last_name: Lozano - first_name: T full_name: Filip, T last_name: Filip - first_name: M full_name: Sauberer, M last_name: Sauberer - first_name: F full_name: Caillé, F last_name: Caillé - first_name: L full_name: Breuil, L last_name: Breuil - first_name: J full_name: Stanek, J last_name: Stanek - first_name: AF full_name: Freeman, AF last_name: Freeman - first_name: Gaia full_name: Novarino, Gaia id: 3E57A680-F248-11E8-B48F-1D18A9856A87 last_name: Novarino orcid: 0000-0002-7673-7178 - first_name: C full_name: Truillet, C last_name: Truillet - first_name: T full_name: Wanek, T last_name: Wanek - first_name: O full_name: Langer, O last_name: Langer citation: ama: Tournier N, Goutal S, Mairinger S, et al. Complete inhibition of ABCB1 and ABCG2 at the blood-brain barrier by co-infusion of erlotinib and tariquidar to improve brain delivery of the model ABCB1/ABCG2 substrate [11C]erlotinib. Journal of Cerebral Blood Flow and Metabolism. 2021;41(7):1634-1646. doi:10.1177/0271678X20965500 apa: Tournier, N., Goutal, S., Mairinger, S., Lozano, I., Filip, T., Sauberer, M., … Langer, O. (2021). Complete inhibition of ABCB1 and ABCG2 at the blood-brain barrier by co-infusion of erlotinib and tariquidar to improve brain delivery of the model ABCB1/ABCG2 substrate [11C]erlotinib. Journal of Cerebral Blood Flow and Metabolism. SAGE Publications. https://doi.org/10.1177/0271678X20965500 chicago: Tournier, N, S Goutal, S Mairinger, IH Lozano, T Filip, M Sauberer, F Caillé, et al. “Complete Inhibition of ABCB1 and ABCG2 at the Blood-Brain Barrier by Co-Infusion of Erlotinib and Tariquidar to Improve Brain Delivery of the Model ABCB1/ABCG2 Substrate [11C]Erlotinib.” Journal of Cerebral Blood Flow and Metabolism. SAGE Publications, 2021. https://doi.org/10.1177/0271678X20965500. ieee: N. Tournier et al., “Complete inhibition of ABCB1 and ABCG2 at the blood-brain barrier by co-infusion of erlotinib and tariquidar to improve brain delivery of the model ABCB1/ABCG2 substrate [11C]erlotinib,” Journal of Cerebral Blood Flow and Metabolism, vol. 41, no. 7. SAGE Publications, pp. 1634–1646, 2021. ista: Tournier N, Goutal S, Mairinger S, Lozano I, Filip T, Sauberer M, Caillé F, Breuil L, Stanek J, Freeman A, Novarino G, Truillet C, Wanek T, Langer O. 2021. Complete inhibition of ABCB1 and ABCG2 at the blood-brain barrier by co-infusion of erlotinib and tariquidar to improve brain delivery of the model ABCB1/ABCG2 substrate [11C]erlotinib. Journal of Cerebral Blood Flow and Metabolism. 41(7), 1634–1646. mla: Tournier, N., et al. “Complete Inhibition of ABCB1 and ABCG2 at the Blood-Brain Barrier by Co-Infusion of Erlotinib and Tariquidar to Improve Brain Delivery of the Model ABCB1/ABCG2 Substrate [11C]Erlotinib.” Journal of Cerebral Blood Flow and Metabolism, vol. 41, no. 7, SAGE Publications, 2021, pp. 1634–46, doi:10.1177/0271678X20965500. short: N. Tournier, S. Goutal, S. Mairinger, I. Lozano, T. Filip, M. Sauberer, F. Caillé, L. Breuil, J. Stanek, A. Freeman, G. Novarino, C. Truillet, T. Wanek, O. Langer, Journal of Cerebral Blood Flow and Metabolism 41 (2021) 1634–1646. date_created: 2020-11-06T08:39:01Z date_published: 2021-07-01T00:00:00Z date_updated: 2023-10-18T06:45:30Z day: '01' department: - _id: GaNo doi: 10.1177/0271678X20965500 external_id: isi: - '000664214100012' pmid: - '33081568' intvolume: ' 41' isi: 1 issue: '7' language: - iso: eng main_file_link: - open_access: '1' url: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8221757/ month: '07' oa: 1 oa_version: Published Version page: 1634-1646 pmid: 1 publication: Journal of Cerebral Blood Flow and Metabolism publication_identifier: eissn: - 1559-7016 issn: - 0271-678x publication_status: published publisher: SAGE Publications quality_controlled: '1' scopus_import: '1' status: public title: Complete inhibition of ABCB1 and ABCG2 at the blood-brain barrier by co-infusion of erlotinib and tariquidar to improve brain delivery of the model ABCB1/ABCG2 substrate [11C]erlotinib type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 41 year: '2021' ... --- _id: '9383' abstract: - lang: eng text: A primary roadblock to our understanding of speciation is that it usually occurs over a timeframe that is too long to study from start to finish. The idea of a speciation continuum provides something of a solution to this problem; rather than observing the entire process, we can simply reconstruct it from the multitude of speciation events that surround us. But what do we really mean when we talk about the speciation continuum, and can it really help us understand speciation? We explored these questions using a literature review and online survey of speciation researchers. Although most researchers were familiar with the concept and thought it was useful, our survey revealed extensive disagreement about what the speciation continuum actually tells us. This is due partly to the lack of a clear definition. Here, we provide an explicit definition that is compatible with the Biological Species Concept. That is, the speciation continuum is a continuum of reproductive isolation. After outlining the logic of the definition in light of alternatives, we explain why attempts to reconstruct the speciation process from present‐day populations will ultimately fail. We then outline how we think the speciation continuum concept can continue to act as a foundation for understanding the continuum of reproductive isolation that surrounds us. acknowledgement: We thank M. Garlovsky, S. Martin, C. Cooney, C. Roux, J. Larson, and J. Mallet for critical feedback and for discussion. K. Lohse, M. de la Cámara, J. Cerca, M. A. Chase, C. Baskett, A. M. Westram, and N. H. Barton gave feedback on a draft of the manuscript. O. Seehausen, two anonymous reviewers, and the AE (Michael Kopp) provided comments that greatly improved the manuscript. V. Holzmann made many corrections to the proofs. G. Bisschop and K. Lohse kindly contributed the simulations and analyses presented in Box 3. We would also like to extend our thanks to everyone who took part in the speciation survey, which received ethical approval through the University of Sheffield Ethics Review Procedure (Application 029768). We are especially grateful to R. K. Butlin for stimulating discussion throughout the writing of the manuscript and for feedback on an earlier draft. article_processing_charge: No article_type: original author: - first_name: Sean full_name: Stankowski, Sean id: 43161670-5719-11EA-8025-FABC3DDC885E last_name: Stankowski - first_name: Mark full_name: Ravinet, Mark last_name: Ravinet citation: ama: Stankowski S, Ravinet M. Defining the speciation continuum. Evolution. 2021;75(6):1256-1273. doi:10.1111/evo.14215 apa: Stankowski, S., & Ravinet, M. (2021). Defining the speciation continuum. Evolution. Oxford University Press. https://doi.org/10.1111/evo.14215 chicago: Stankowski, Sean, and Mark Ravinet. “Defining the Speciation Continuum.” Evolution. Oxford University Press, 2021. https://doi.org/10.1111/evo.14215. ieee: S. Stankowski and M. Ravinet, “Defining the speciation continuum,” Evolution, vol. 75, no. 6. Oxford University Press, pp. 1256–1273, 2021. ista: Stankowski S, Ravinet M. 2021. Defining the speciation continuum. Evolution. 75(6), 1256–1273. mla: Stankowski, Sean, and Mark Ravinet. “Defining the Speciation Continuum.” Evolution, vol. 75, no. 6, Oxford University Press, 2021, pp. 1256–73, doi:10.1111/evo.14215. short: S. Stankowski, M. Ravinet, Evolution 75 (2021) 1256–1273. date_created: 2021-05-09T22:01:39Z date_published: 2021-03-22T00:00:00Z date_updated: 2023-10-18T08:16:01Z day: '22' ddc: - '570' department: - _id: NiBa doi: 10.1111/evo.14215 external_id: isi: - '000647226400001' file: - access_level: open_access checksum: 96f6ccf15d95a4e9f7c0b27eee570fa6 content_type: application/pdf creator: kschuh date_created: 2022-03-25T12:02:04Z date_updated: 2022-03-25T12:02:04Z file_id: '10921' file_name: 2021_Evolution_Stankowski.pdf file_size: 719991 relation: main_file success: 1 file_date_updated: 2022-03-25T12:02:04Z has_accepted_license: '1' intvolume: ' 75' isi: 1 issue: '6' language: - iso: eng license: https://creativecommons.org/licenses/by-nc/4.0/ month: '03' oa: 1 oa_version: Published Version page: 1256-1273 publication: Evolution publication_identifier: eissn: - 1558-5646 issn: - 0014-3820 publication_status: published publisher: Oxford University Press quality_controlled: '1' scopus_import: '1' status: public title: Defining the speciation continuum tmp: image: /images/cc_by_nc.png legal_code_url: https://creativecommons.org/licenses/by-nc/4.0/legalcode name: Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) short: CC BY-NC (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 75 year: '2021' ... --- _id: '10223' abstract: - lang: eng text: Growth regulation tailors development in plants to their environment. A prominent example of this is the response to gravity, in which shoots bend up and roots bend down1. This paradox is based on opposite effects of the phytohormone auxin, which promotes cell expansion in shoots while inhibiting it in roots via a yet unknown cellular mechanism2. Here, by combining microfluidics, live imaging, genetic engineering and phosphoproteomics in Arabidopsis thaliana, we advance understanding of how auxin inhibits root growth. We show that auxin activates two distinct, antagonistically acting signalling pathways that converge on rapid regulation of apoplastic pH, a causative determinant of growth. Cell surface-based TRANSMEMBRANE KINASE1 (TMK1) interacts with and mediates phosphorylation and activation of plasma membrane H+-ATPases for apoplast acidification, while intracellular canonical auxin signalling promotes net cellular H+ influx, causing apoplast alkalinization. Simultaneous activation of these two counteracting mechanisms poises roots for rapid, fine-tuned growth modulation in navigating complex soil environments. acknowledged_ssus: - _id: LifeSc - _id: M-Shop - _id: Bio acknowledgement: We thank N. Gnyliukh and L. Hörmayer for technical assistance and N. Paris for sharing PM-Cyto seeds. We gratefully acknowledge the Life Science, Machine Shop and Bioimaging Facilities of IST Austria. This project has received funding from the European Research Council Advanced Grant (ETAP-742985) and the Austrian Science Fund (FWF) under I 3630-B25 to J.F., the National Institutes of Health (GM067203) to W.M.G., the Netherlands Organization for Scientific Research (NWO; VIDI-864.13.001), Research Foundation-Flanders (FWO; Odysseus II G0D0515N) and a European Research Council Starting Grant (TORPEDO-714055) to W.S. and B.D.R., the VICI grant (865.14.001) from the Netherlands Organization for Scientific Research to M.R. and D.W., the Australian Research Council and China National Distinguished Expert Project (WQ20174400441) to S.S., the MEXT/JSPS KAKENHI to K.T. (20K06685) and T.K. (20H05687 and 20H05910), the European Union’s Horizon 2020 research and innovation programme under Marie Skłodowska-Curie grant agreement no. 665385 and the DOC Fellowship of the Austrian Academy of Sciences to L.L., and the China Scholarship Council to J.C. article_processing_charge: No article_type: original author: - first_name: Lanxin full_name: Li, Lanxin id: 367EF8FA-F248-11E8-B48F-1D18A9856A87 last_name: Li orcid: 0000-0002-5607-272X - first_name: Inge full_name: Verstraeten, Inge id: 362BF7FE-F248-11E8-B48F-1D18A9856A87 last_name: Verstraeten orcid: 0000-0001-7241-2328 - first_name: Mark full_name: Roosjen, Mark last_name: Roosjen - first_name: Koji full_name: Takahashi, Koji last_name: Takahashi - first_name: Lesia full_name: Rodriguez Solovey, Lesia id: 3922B506-F248-11E8-B48F-1D18A9856A87 last_name: Rodriguez Solovey orcid: 0000-0002-7244-7237 - first_name: Jack full_name: Merrin, Jack id: 4515C308-F248-11E8-B48F-1D18A9856A87 last_name: Merrin orcid: 0000-0001-5145-4609 - first_name: Jian full_name: Chen, Jian last_name: Chen - first_name: Lana full_name: Shabala, Lana last_name: Shabala - first_name: Wouter full_name: Smet, Wouter last_name: Smet - first_name: Hong full_name: Ren, Hong last_name: Ren - first_name: Steffen full_name: Vanneste, Steffen last_name: Vanneste - first_name: Sergey full_name: Shabala, Sergey last_name: Shabala - first_name: Bert full_name: De Rybel, Bert last_name: De Rybel - first_name: Dolf full_name: Weijers, Dolf last_name: Weijers - first_name: Toshinori full_name: Kinoshita, Toshinori last_name: Kinoshita - first_name: William M. full_name: Gray, William M. last_name: Gray - first_name: Jiří full_name: Friml, Jiří id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 citation: ama: Li L, Verstraeten I, Roosjen M, et al. Cell surface and intracellular auxin signalling for H+ fluxes in root growth. Nature. 2021;599(7884):273-277. doi:10.1038/s41586-021-04037-6 apa: Li, L., Verstraeten, I., Roosjen, M., Takahashi, K., Rodriguez Solovey, L., Merrin, J., … Friml, J. (2021). Cell surface and intracellular auxin signalling for H+ fluxes in root growth. Nature. Springer Nature. https://doi.org/10.1038/s41586-021-04037-6 chicago: Li, Lanxin, Inge Verstraeten, Mark Roosjen, Koji Takahashi, Lesia Rodriguez Solovey, Jack Merrin, Jian Chen, et al. “Cell Surface and Intracellular Auxin Signalling for H+ Fluxes in Root Growth.” Nature. Springer Nature, 2021. https://doi.org/10.1038/s41586-021-04037-6. ieee: L. Li et al., “Cell surface and intracellular auxin signalling for H+ fluxes in root growth,” Nature, vol. 599, no. 7884. Springer Nature, pp. 273–277, 2021. ista: Li L, Verstraeten I, Roosjen M, Takahashi K, Rodriguez Solovey L, Merrin J, Chen J, Shabala L, Smet W, Ren H, Vanneste S, Shabala S, De Rybel B, Weijers D, Kinoshita T, Gray WM, Friml J. 2021. Cell surface and intracellular auxin signalling for H+ fluxes in root growth. Nature. 599(7884), 273–277. mla: Li, Lanxin, et al. “Cell Surface and Intracellular Auxin Signalling for H+ Fluxes in Root Growth.” Nature, vol. 599, no. 7884, Springer Nature, 2021, pp. 273–77, doi:10.1038/s41586-021-04037-6. short: L. Li, I. Verstraeten, M. Roosjen, K. Takahashi, L. Rodriguez Solovey, J. Merrin, J. Chen, L. Shabala, W. Smet, H. Ren, S. Vanneste, S. Shabala, B. De Rybel, D. Weijers, T. Kinoshita, W.M. Gray, J. Friml, Nature 599 (2021) 273–277. date_created: 2021-11-07T23:01:25Z date_published: 2021-11-11T00:00:00Z date_updated: 2023-10-18T08:30:53Z day: '11' department: - _id: JiFr - _id: NanoFab doi: 10.1038/s41586-021-04037-6 ec_funded: 1 external_id: isi: - '000713338100006' pmid: - '34707283' intvolume: ' 599' isi: 1 issue: '7884' keyword: - Multidisciplinary language: - iso: eng main_file_link: - open_access: '1' url: https://www.doi.org/10.21203/rs.3.rs-266395/v3 month: '11' oa: 1 oa_version: Preprint page: 273-277 pmid: 1 project: - _id: 261099A6-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '742985' name: Tracing Evolution of Auxin Transport and Polarity in Plants - _id: 26538374-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: I03630 name: Molecular mechanisms of endocytic cargo recognition in plants - _id: 2564DBCA-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '665385' name: International IST Doctoral Program - _id: 26B4D67E-B435-11E9-9278-68D0E5697425 grant_number: '25351' name: 'A Case Study of Plant Growth Regulation: Molecular Mechanism of Auxin-mediated Rapid Growth Inhibition in Arabidopsis Root' publication: Nature publication_identifier: eissn: - '14764687' issn: - '00280836' publication_status: published publisher: Springer Nature quality_controlled: '1' related_material: link: - description: News on IST Webpage relation: press_release url: https://ist.ac.at/en/news/stop-and-grow/ record: - id: '10095' relation: earlier_version status: public scopus_import: '1' status: public title: Cell surface and intracellular auxin signalling for H+ fluxes in root growth type: journal_article user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8 volume: 599 year: '2021' ... --- _id: '9379' abstract: - lang: eng text: When B cells encounter membrane-bound antigens, the formation and coalescence of B cell antigen receptor (BCR) microclusters amplifies BCR signaling. The ability of B cells to probe the surface of antigen-presenting cells (APCs) and respond to APC-bound antigens requires remodeling of the actin cytoskeleton. Initial BCR signaling stimulates actin-related protein (Arp) 2/3 complex-dependent actin polymerization, which drives B cell spreading as well as the centripetal movement and coalescence of BCR microclusters at the B cell-APC synapse. Sustained actin polymerization depends on concomitant actin filament depolymerization, which enables the recycling of actin monomers and Arp2/3 complexes. Cofilin-mediated severing of actin filaments is a rate-limiting step in the morphological changes that occur during immune synapse formation. Hence, regulators of cofilin activity such as WD repeat-containing protein 1 (Wdr1), LIM domain kinase (LIMK), and coactosin-like 1 (Cotl1) may also be essential for actin-dependent processes in B cells. Wdr1 enhances cofilin-mediated actin disassembly. Conversely, Cotl1 competes with cofilin for binding to actin and LIMK phosphorylates cofilin and prevents it from binding to actin filaments. We now show that Wdr1 and LIMK have distinct roles in BCR-induced assembly of the peripheral actin structures that drive B cell spreading, and that cofilin, Wdr1, and LIMK all contribute to the actin-dependent amplification of BCR signaling at the immune synapse. Depleting Cotl1 had no effect on these processes. Thus, the Wdr1-LIMK-cofilin axis is critical for BCR-induced actin remodeling and for B cell responses to APC-bound antigens. acknowledgement: We thank the UBC Life Sciences Institute Imaging Facility andthe UBC Flow Cytometry Facility. article_number: '649433' article_processing_charge: No article_type: original author: - first_name: Madison full_name: Bolger-Munro, Madison id: 516F03FA-93A3-11EA-A7C5-D6BE3DDC885E last_name: Bolger-Munro orcid: 0000-0002-8176-4824 - first_name: Kate full_name: Choi, Kate last_name: Choi - first_name: Faith full_name: Cheung, Faith last_name: Cheung - first_name: Yi Tian full_name: Liu, Yi Tian last_name: Liu - first_name: May full_name: Dang-Lawson, May last_name: Dang-Lawson - first_name: Nikola full_name: Deretic, Nikola last_name: Deretic - first_name: Connor full_name: Keane, Connor last_name: Keane - first_name: Michael R. full_name: Gold, Michael R. last_name: Gold citation: ama: Bolger-Munro M, Choi K, Cheung F, et al. The Wdr1-LIMK-Cofilin axis controls B cell antigen receptor-induced actin remodeling and signaling at the immune synapse. Frontiers in Cell and Developmental Biology. 2021;9. doi:10.3389/fcell.2021.649433 apa: Bolger-Munro, M., Choi, K., Cheung, F., Liu, Y. T., Dang-Lawson, M., Deretic, N., … Gold, M. R. (2021). The Wdr1-LIMK-Cofilin axis controls B cell antigen receptor-induced actin remodeling and signaling at the immune synapse. Frontiers in Cell and Developmental Biology. Frontiers Media. https://doi.org/10.3389/fcell.2021.649433 chicago: Bolger-Munro, Madison, Kate Choi, Faith Cheung, Yi Tian Liu, May Dang-Lawson, Nikola Deretic, Connor Keane, and Michael R. Gold. “The Wdr1-LIMK-Cofilin Axis Controls B Cell Antigen Receptor-Induced Actin Remodeling and Signaling at the Immune Synapse.” Frontiers in Cell and Developmental Biology. Frontiers Media, 2021. https://doi.org/10.3389/fcell.2021.649433. ieee: M. Bolger-Munro et al., “The Wdr1-LIMK-Cofilin axis controls B cell antigen receptor-induced actin remodeling and signaling at the immune synapse,” Frontiers in Cell and Developmental Biology, vol. 9. Frontiers Media, 2021. ista: Bolger-Munro M, Choi K, Cheung F, Liu YT, Dang-Lawson M, Deretic N, Keane C, Gold MR. 2021. The Wdr1-LIMK-Cofilin axis controls B cell antigen receptor-induced actin remodeling and signaling at the immune synapse. Frontiers in Cell and Developmental Biology. 9, 649433. mla: Bolger-Munro, Madison, et al. “The Wdr1-LIMK-Cofilin Axis Controls B Cell Antigen Receptor-Induced Actin Remodeling and Signaling at the Immune Synapse.” Frontiers in Cell and Developmental Biology, vol. 9, 649433, Frontiers Media, 2021, doi:10.3389/fcell.2021.649433. short: M. Bolger-Munro, K. Choi, F. Cheung, Y.T. Liu, M. Dang-Lawson, N. Deretic, C. Keane, M.R. Gold, Frontiers in Cell and Developmental Biology 9 (2021). date_created: 2021-05-09T22:01:37Z date_published: 2021-04-13T00:00:00Z date_updated: 2023-10-18T08:19:49Z day: '13' ddc: - '570' department: - _id: CaHe doi: 10.3389/fcell.2021.649433 external_id: isi: - '000644419500001' pmid: - '33928084' file: - access_level: open_access checksum: 8c8a03575d2f7583f88dc3b658b0976b content_type: application/pdf creator: kschuh date_created: 2021-05-11T15:09:23Z date_updated: 2021-05-11T15:09:23Z file_id: '9386' file_name: 2021_Frontiers_Cell_Bolger-Munro.pdf file_size: 4076024 relation: main_file success: 1 file_date_updated: 2021-05-11T15:09:23Z has_accepted_license: '1' intvolume: ' 9' isi: 1 keyword: - B cell - actin - immune synapse - cell spreading - cofilin - WDR1 (AIP1) - LIM domain kinase - B cell receptor (BCR) language: - iso: eng month: '04' oa: 1 oa_version: Published Version pmid: 1 publication: Frontiers in Cell and Developmental Biology publication_identifier: eissn: - 2296-634X publication_status: published publisher: Frontiers Media quality_controlled: '1' scopus_import: '1' status: public title: The Wdr1-LIMK-Cofilin axis controls B cell antigen receptor-induced actin remodeling and signaling at the immune synapse tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 9 year: '2021' ... --- _id: '9362' abstract: - lang: eng text: A central goal in systems neuroscience is to understand the functions performed by neural circuits. Previous top-down models addressed this question by comparing the behaviour of an ideal model circuit, optimised to perform a given function, with neural recordings. However, this requires guessing in advance what function is being performed, which may not be possible for many neural systems. To address this, we propose an inverse reinforcement learning (RL) framework for inferring the function performed by a neural network from data. We assume that the responses of each neuron in a network are optimised so as to drive the network towards ‘rewarded’ states, that are desirable for performing a given function. We then show how one can use inverse RL to infer the reward function optimised by the network from observing its responses. This inferred reward function can be used to predict how the neural network should adapt its dynamics to perform the same function when the external environment or network structure changes. This could lead to theoretical predictions about how neural network dynamics adapt to deal with cell death and/or varying sensory stimulus statistics. acknowledgement: The authors would like to thank Ulisse Ferrari for useful discussions and feedback. article_number: e0248940 article_processing_charge: No article_type: original author: - first_name: Matthew J full_name: Chalk, Matthew J id: 2BAAC544-F248-11E8-B48F-1D18A9856A87 last_name: Chalk orcid: 0000-0001-7782-4436 - first_name: Gašper full_name: Tkačik, Gašper id: 3D494DCA-F248-11E8-B48F-1D18A9856A87 last_name: Tkačik orcid: 0000-0002-6699-1455 - first_name: Olivier full_name: Marre, Olivier last_name: Marre citation: ama: Chalk MJ, Tkačik G, Marre O. Inferring the function performed by a recurrent neural network. PLoS ONE. 2021;16(4). doi:10.1371/journal.pone.0248940 apa: Chalk, M. J., Tkačik, G., & Marre, O. (2021). Inferring the function performed by a recurrent neural network. PLoS ONE. Public Library of Science. https://doi.org/10.1371/journal.pone.0248940 chicago: Chalk, Matthew J, Gašper Tkačik, and Olivier Marre. “Inferring the Function Performed by a Recurrent Neural Network.” PLoS ONE. Public Library of Science, 2021. https://doi.org/10.1371/journal.pone.0248940. ieee: M. J. Chalk, G. Tkačik, and O. Marre, “Inferring the function performed by a recurrent neural network,” PLoS ONE, vol. 16, no. 4. Public Library of Science, 2021. ista: Chalk MJ, Tkačik G, Marre O. 2021. Inferring the function performed by a recurrent neural network. PLoS ONE. 16(4), e0248940. mla: Chalk, Matthew J., et al. “Inferring the Function Performed by a Recurrent Neural Network.” PLoS ONE, vol. 16, no. 4, e0248940, Public Library of Science, 2021, doi:10.1371/journal.pone.0248940. short: M.J. Chalk, G. Tkačik, O. Marre, PLoS ONE 16 (2021). date_created: 2021-05-02T22:01:28Z date_published: 2021-04-15T00:00:00Z date_updated: 2023-10-18T08:17:42Z day: '15' ddc: - '570' department: - _id: GaTk doi: 10.1371/journal.pone.0248940 external_id: isi: - '000641474900072' pmid: - '33857170' file: - access_level: open_access checksum: c52da133850307d2031f552d998f00e8 content_type: application/pdf creator: kschuh date_created: 2021-05-04T13:22:19Z date_updated: 2021-05-04T13:22:19Z file_id: '9371' file_name: 2021_pone_Chalk.pdf file_size: 2768282 relation: main_file success: 1 file_date_updated: 2021-05-04T13:22:19Z has_accepted_license: '1' intvolume: ' 16' isi: 1 issue: '4' language: - iso: eng month: '04' oa: 1 oa_version: Published Version pmid: 1 publication: PLoS ONE publication_identifier: eissn: - '19326203' publication_status: published publisher: Public Library of Science quality_controlled: '1' scopus_import: '1' status: public title: Inferring the function performed by a recurrent neural network tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 16 year: '2021' ... --- _id: '9986' abstract: - lang: eng text: Size control is a fundamental question in biology, showing incremental complexity in plants, whose cells possess a rigid cell wall. The phytohormone auxin is a vital growth regulator with central importance for differential growth control. Our results indicate that auxin-reliant growth programs affect the molecular complexity of xyloglucans, the major type of cell wall hemicellulose in eudicots. Auxin-dependent induction and repression of growth coincide with reduced and enhanced molecular complexity of xyloglucans, respectively. In agreement with a proposed function in growth control, genetic interference with xyloglucan side decorations distinctly modulates auxin-dependent differential growth rates. Our work proposes that auxin-dependent growth programs have a spatially defined effect on xyloglucan’s molecular structure, which in turn affects cell wall mechanics and specifies differential, gravitropic hypocotyl growth. acknowledgement: "We are grateful to Paul Knox, Markus Pauly, Malcom O’Neill, and Ignacio Zarra for providing published material; the BOKU-VIBT Imaging Center for access and M. Debreczeny for expertise; J.I. Thaker and Georg Seifert for critical reading.\r\n" article_number: '9222' article_processing_charge: Yes article_type: original author: - first_name: Silvia Melina full_name: Velasquez, Silvia Melina last_name: Velasquez - first_name: Xiaoyuan full_name: Guo, Xiaoyuan last_name: Guo - first_name: Marçal full_name: Gallemi, Marçal id: 460C6802-F248-11E8-B48F-1D18A9856A87 last_name: Gallemi orcid: 0000-0003-4675-6893 - first_name: Bibek full_name: Aryal, Bibek last_name: Aryal - first_name: Peter full_name: Venhuizen, Peter last_name: Venhuizen - first_name: Elke full_name: Barbez, Elke last_name: Barbez - first_name: Kai Alexander full_name: Dünser, Kai Alexander last_name: Dünser - first_name: Martin full_name: Darino, Martin last_name: Darino - first_name: Aleš full_name: Pӗnčík, Aleš last_name: Pӗnčík - first_name: Ondřej full_name: Novák, Ondřej last_name: Novák - first_name: Maria full_name: Kalyna, Maria last_name: Kalyna - first_name: Gregory full_name: Mouille, Gregory last_name: Mouille - first_name: Eva full_name: Benková, Eva id: 38F4F166-F248-11E8-B48F-1D18A9856A87 last_name: Benková orcid: 0000-0002-8510-9739 - first_name: Rishikesh P. full_name: Bhalerao, Rishikesh P. last_name: Bhalerao - first_name: Jozef full_name: Mravec, Jozef last_name: Mravec - first_name: Jürgen full_name: Kleine-Vehn, Jürgen last_name: Kleine-Vehn citation: ama: Velasquez SM, Guo X, Gallemi M, et al. Xyloglucan remodeling defines auxin-dependent differential tissue expansion in plants. International Journal of Molecular Sciences. 2021;22(17). doi:10.3390/ijms22179222 apa: Velasquez, S. M., Guo, X., Gallemi, M., Aryal, B., Venhuizen, P., Barbez, E., … Kleine-Vehn, J. (2021). Xyloglucan remodeling defines auxin-dependent differential tissue expansion in plants. International Journal of Molecular Sciences. MDPI. https://doi.org/10.3390/ijms22179222 chicago: Velasquez, Silvia Melina, Xiaoyuan Guo, Marçal Gallemi, Bibek Aryal, Peter Venhuizen, Elke Barbez, Kai Alexander Dünser, et al. “Xyloglucan Remodeling Defines Auxin-Dependent Differential Tissue Expansion in Plants.” International Journal of Molecular Sciences. MDPI, 2021. https://doi.org/10.3390/ijms22179222. ieee: S. M. Velasquez et al., “Xyloglucan remodeling defines auxin-dependent differential tissue expansion in plants,” International Journal of Molecular Sciences, vol. 22, no. 17. MDPI, 2021. ista: Velasquez SM, Guo X, Gallemi M, Aryal B, Venhuizen P, Barbez E, Dünser KA, Darino M, Pӗnčík A, Novák O, Kalyna M, Mouille G, Benková E, Bhalerao RP, Mravec J, Kleine-Vehn J. 2021. Xyloglucan remodeling defines auxin-dependent differential tissue expansion in plants. International Journal of Molecular Sciences. 22(17), 9222. mla: Velasquez, Silvia Melina, et al. “Xyloglucan Remodeling Defines Auxin-Dependent Differential Tissue Expansion in Plants.” International Journal of Molecular Sciences, vol. 22, no. 17, 9222, MDPI, 2021, doi:10.3390/ijms22179222. short: S.M. Velasquez, X. Guo, M. Gallemi, B. Aryal, P. Venhuizen, E. Barbez, K.A. Dünser, M. Darino, A. Pӗnčík, O. Novák, M. Kalyna, G. Mouille, E. Benková, R.P. Bhalerao, J. Mravec, J. Kleine-Vehn, International Journal of Molecular Sciences 22 (2021). date_created: 2021-09-05T22:01:24Z date_published: 2021-08-26T00:00:00Z date_updated: 2023-10-31T19:29:38Z day: '26' ddc: - '575' department: - _id: EvBe doi: 10.3390/ijms22179222 external_id: isi: - '000694347100001' pmid: - '34502129' file: - access_level: open_access checksum: 6b7055cf89f1b7ed8594c3fdf56f000b content_type: application/pdf creator: cchlebak date_created: 2021-09-06T12:50:19Z date_updated: 2021-09-07T09:04:53Z file_id: '9988' file_name: 2021_IntJMolecularSciences_Velasquez.pdf file_size: 2162247 relation: main_file file_date_updated: 2021-09-07T09:04:53Z has_accepted_license: '1' intvolume: ' 22' isi: 1 issue: '17' keyword: - auxin - growth - cell wall - xyloglucans - hypocotyls - gravitropism language: - iso: eng month: '08' oa: 1 oa_version: Published Version pmid: 1 publication: International Journal of Molecular Sciences publication_identifier: eissn: - 1422-0067 issn: - 1661-6596 publication_status: published publisher: MDPI quality_controlled: '1' scopus_import: '1' status: public title: Xyloglucan remodeling defines auxin-dependent differential tissue expansion in plants tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 22 year: '2021' ... --- _id: '9189' abstract: - lang: eng text: Transposable elements exist widely throughout plant genomes and play important roles in plant evolution. Auxin is an important regulator that is traditionally associated with root development and drought stress adaptation. The DEEPER ROOTING 1 (DRO1) gene is a key component of rice drought avoidance. Here, we identified a transposon that acts as an autonomous auxin‐responsive promoter and its presence at specific genome positions conveys physiological adaptations related to drought avoidance. Rice varieties with high and auxin‐mediated transcription of DRO1 in the root tip show deeper and longer root phenotypes and are thus better adapted to drought. The INDITTO2 transposon contains an auxin response element and displays auxin‐responsive promoter activity; it is thus able to convey auxin regulation of transcription to genes in its proximity. In the rice Acuce, which displays DRO1‐mediated drought adaptation, the INDITTO2 transposon was found to be inserted at the promoter region of the DRO1 locus. Transgenesis‐based insertion of the INDITTO2 transposon into the DRO1 promoter of the non‐adapted rice variety Nipponbare was sufficient to promote its drought avoidance. Our data identify an example of how transposons can act as promoters and convey hormonal regulation to nearby loci, improving plant fitness in response to different abiotic stresses. article_processing_charge: No article_type: original author: - first_name: Y full_name: Zhao, Y last_name: Zhao - first_name: L full_name: Wu, L last_name: Wu - first_name: Q full_name: Fu, Q last_name: Fu - first_name: D full_name: Wang, D last_name: Wang - first_name: J full_name: Li, J last_name: Li - first_name: B full_name: Yao, B last_name: Yao - first_name: S full_name: Yu, S last_name: Yu - first_name: L full_name: Jiang, L last_name: Jiang - first_name: J full_name: Qian, J last_name: Qian - first_name: X full_name: Zhou, X last_name: Zhou - first_name: L full_name: Han, L last_name: Han - first_name: S full_name: Zhao, S last_name: Zhao - first_name: C full_name: Ma, C last_name: Ma - first_name: Y full_name: Zhang, Y last_name: Zhang - first_name: C full_name: Luo, C last_name: Luo - first_name: Q full_name: Dong, Q last_name: Dong - first_name: S full_name: Li, S last_name: Li - first_name: L full_name: Zhang, L last_name: Zhang - first_name: X full_name: Jiang, X last_name: Jiang - first_name: Y full_name: Li, Y last_name: Li - first_name: H full_name: Luo, H last_name: Luo - first_name: K full_name: Li, K last_name: Li - first_name: J full_name: Yang, J last_name: Yang - first_name: Q full_name: Luo, Q last_name: Luo - first_name: L full_name: Li, L last_name: Li - first_name: S full_name: Peng, S last_name: Peng - first_name: H full_name: Huang, H last_name: Huang - first_name: Z full_name: Zuo, Z last_name: Zuo - first_name: C full_name: Liu, C last_name: Liu - first_name: L full_name: Wang, L last_name: Wang - first_name: C full_name: Li, C last_name: Li - first_name: X full_name: He, X last_name: He - first_name: Jiří full_name: Friml, Jiří id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 - first_name: Y full_name: Du, Y last_name: Du citation: ama: Zhao Y, Wu L, Fu Q, et al. INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance. Plant, Cell & Environment. 2021;44(6):1846-1857. doi:10.1111/pce.14029 apa: Zhao, Y., Wu, L., Fu, Q., Wang, D., Li, J., Yao, B., … Du, Y. (2021). INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance. Plant, Cell & Environment. Wiley. https://doi.org/10.1111/pce.14029 chicago: Zhao, Y, L Wu, Q Fu, D Wang, J Li, B Yao, S Yu, et al. “INDITTO2 Transposon Conveys Auxin-Mediated DRO1 Transcription for Rice Drought Avoidance.” Plant, Cell & Environment. Wiley, 2021. https://doi.org/10.1111/pce.14029. ieee: Y. Zhao et al., “INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance,” Plant, Cell & Environment, vol. 44, no. 6. Wiley, pp. 1846–1857, 2021. ista: Zhao Y, Wu L, Fu Q, Wang D, Li J, Yao B, Yu S, Jiang L, Qian J, Zhou X, Han L, Zhao S, Ma C, Zhang Y, Luo C, Dong Q, Li S, Zhang L, Jiang X, Li Y, Luo H, Li K, Yang J, Luo Q, Li L, Peng S, Huang H, Zuo Z, Liu C, Wang L, Li C, He X, Friml J, Du Y. 2021. INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance. Plant, Cell & Environment. 44(6), 1846–1857. mla: Zhao, Y., et al. “INDITTO2 Transposon Conveys Auxin-Mediated DRO1 Transcription for Rice Drought Avoidance.” Plant, Cell & Environment, vol. 44, no. 6, Wiley, 2021, pp. 1846–57, doi:10.1111/pce.14029. short: Y. Zhao, L. Wu, Q. Fu, D. Wang, J. Li, B. Yao, S. Yu, L. Jiang, J. Qian, X. Zhou, L. Han, S. Zhao, C. Ma, Y. Zhang, C. Luo, Q. Dong, S. Li, L. Zhang, X. Jiang, Y. Li, H. Luo, K. Li, J. Yang, Q. Luo, L. Li, S. Peng, H. Huang, Z. Zuo, C. Liu, L. Wang, C. Li, X. He, J. Friml, Y. Du, Plant, Cell & Environment 44 (2021) 1846–1857. date_created: 2021-02-24T10:07:21Z date_published: 2021-06-01T00:00:00Z date_updated: 2023-11-07T08:18:36Z day: '01' ddc: - '580' department: - _id: JiFr doi: 10.1111/pce.14029 external_id: isi: - '000625398600001' pmid: - '33576018' file: - access_level: open_access checksum: a812418fede076741c9c4dc07f317068 content_type: application/pdf creator: amally date_created: 2023-11-02T17:02:11Z date_updated: 2023-11-02T17:02:11Z file_id: '14481' file_name: Zhao PlantCellEnv 2021_accepted.pdf file_size: 8437528 relation: main_file success: 1 file_date_updated: 2023-11-02T17:02:11Z has_accepted_license: '1' intvolume: ' 44' isi: 1 issue: '6' language: - iso: eng month: '06' oa: 1 oa_version: Submitted Version page: 1846-1857 pmid: 1 publication: Plant, Cell & Environment publication_identifier: eissn: - 1365-3040 issn: - 0140-7791 publication_status: published publisher: Wiley quality_controlled: '1' scopus_import: '1' status: public title: INDITTO2 transposon conveys auxin-mediated DRO1 transcription for rice drought avoidance type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 44 year: '2021' ... --- _id: '9792' abstract: - lang: eng text: 'This paper establishes new connections between many-body quantum systems, One-body Reduced Density Matrices Functional Theory (1RDMFT) and Optimal Transport (OT), by interpreting the problem of computing the ground-state energy of a finite dimensional composite quantum system at positive temperature as a non-commutative entropy regularized Optimal Transport problem. We develop a new approach to fully characterize the dual-primal solutions in such non-commutative setting. The mathematical formalism is particularly relevant in quantum chemistry: numerical realizations of the many-electron ground state energy can be computed via a non-commutative version of Sinkhorn algorithm. Our approach allows to prove convergence and robustness of this algorithm, which, to our best knowledge, were unknown even in the two marginal case. Our methods are based on careful a priori estimates in the dual problem, which we believe to be of independent interest. Finally, the above results are extended in 1RDMFT setting, where bosonic or fermionic symmetry conditions are enforced on the problem.' acknowledgement: 'This work started when A.G. was visiting the Erwin Schrödinger Institute and then continued when D.F. and L.P visited the Theoretical Chemistry Department of the Vrije Universiteit Amsterdam. The authors thanks the hospitality of both places and, especially, P. Gori-Giorgi and K. Giesbertz for fruitful discussions and literature suggestions in the early state of the project. Finally, the authors also thanks J. Maas and R. Seiringer for their feedback and useful comments to a first draft of the article. L.P. acknowledges support by the Austrian Science Fund (FWF), grants No W1245 and NoF65. D.F acknowledges support by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreements No 716117 and No 694227). A.G. acknowledges funding by the European Research Council under H2020/MSCA-IF “OTmeetsDFT” [grant ID: 795942].' article_number: '2106.11217' article_processing_charge: No author: - first_name: Dario full_name: Feliciangeli, Dario id: 41A639AA-F248-11E8-B48F-1D18A9856A87 last_name: Feliciangeli orcid: 0000-0003-0754-8530 - first_name: Augusto full_name: Gerolin, Augusto last_name: Gerolin - first_name: Lorenzo full_name: Portinale, Lorenzo id: 30AD2CBC-F248-11E8-B48F-1D18A9856A87 last_name: Portinale citation: ama: Feliciangeli D, Gerolin A, Portinale L. A non-commutative entropic optimal transport approach to quantum composite systems at positive temperature. arXiv. doi:10.48550/arXiv.2106.11217 apa: Feliciangeli, D., Gerolin, A., & Portinale, L. (n.d.). A non-commutative entropic optimal transport approach to quantum composite systems at positive temperature. arXiv. https://doi.org/10.48550/arXiv.2106.11217 chicago: Feliciangeli, Dario, Augusto Gerolin, and Lorenzo Portinale. “A Non-Commutative Entropic Optimal Transport Approach to Quantum Composite Systems at Positive Temperature.” ArXiv, n.d. https://doi.org/10.48550/arXiv.2106.11217. ieee: D. Feliciangeli, A. Gerolin, and L. Portinale, “A non-commutative entropic optimal transport approach to quantum composite systems at positive temperature,” arXiv. . ista: Feliciangeli D, Gerolin A, Portinale L. A non-commutative entropic optimal transport approach to quantum composite systems at positive temperature. arXiv, 2106.11217. mla: Feliciangeli, Dario, et al. “A Non-Commutative Entropic Optimal Transport Approach to Quantum Composite Systems at Positive Temperature.” ArXiv, 2106.11217, doi:10.48550/arXiv.2106.11217. short: D. Feliciangeli, A. Gerolin, L. Portinale, ArXiv (n.d.). date_created: 2021-08-06T09:07:12Z date_published: 2021-07-21T00:00:00Z date_updated: 2023-11-14T13:21:01Z day: '21' ddc: - '510' department: - _id: RoSe - _id: JaMa doi: 10.48550/arXiv.2106.11217 ec_funded: 1 external_id: arxiv: - '2106.11217' has_accepted_license: '1' language: - iso: eng main_file_link: - open_access: '1' url: https://doi.org/10.48550/arXiv.2106.11217 month: '07' oa: 1 oa_version: Preprint project: - _id: 25C6DC12-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '694227' name: Analysis of quantum many-body systems - _id: 256E75B8-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '716117' name: Optimal Transport and Stochastic Dynamics - _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2 grant_number: F6504 name: Taming Complexity in Partial Differential Systems publication: arXiv publication_status: submitted related_material: record: - id: '9733' relation: dissertation_contains status: public - id: '10030' relation: dissertation_contains status: public - id: '12911' relation: later_version status: public status: public title: A non-commutative entropic optimal transport approach to quantum composite systems at positive temperature tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: preprint user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2021' ... --- _id: '10655' abstract: - lang: eng text: "Adeno-associated viruses (AAVs) are widely used to deliver genetic material in vivo to distinct cell types such as neurons or glial cells, allowing for targeted manipulation. Transduction of microglia is mostly excluded from this strategy, likely due to the cells’ heterogeneous state upon environmental changes, which makes AAV design challenging. Here, we established the retina as a model system for microglial AAV validation and optimization. First, we show that AAV2/6 transduced microglia in both synaptic layers, where layer preference corresponds to the intravitreal or subretinal delivery method. Surprisingly, we observed significantly enhanced microglial transduction during photoreceptor degeneration. Thus, we modified the AAV6 capsid to reduce heparin binding by introducing four point mutations (K531E, R576Q, K493S, and K459S), resulting in increased microglial transduction in the outer plexiform layer. Finally, to improve microglial-specific transduction, we validated a Cre-dependent transgene delivery cassette for use in combination with the Cx3cr1CreERT2 mouse line. Together, our results provide a foundation for future studies optimizing AAV-mediated microglia transduction and highlight that environmental conditions influence microglial transduction efficiency.\r\n" acknowledged_ssus: - _id: Bio - _id: LifeSc - _id: PreCl acknowledgement: This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement no. 715571). The research was supported by the Scientific Service Units (SSU) of IST Austria through resources provided by the Bioimaging Facility, the Life Science Facility, and the Pre-Clinical Facility, namely Sonja Haslinger and Michael Schunn for their animal colony management and support. We would also like to thank Chakrabarty Lab for sharing the plasmids for AAV2/6 production. Finally, we would like to thank the Siegert team members for discussion about the manuscript. article_processing_charge: Yes article_type: original author: - first_name: Margaret E full_name: Maes, Margaret E id: 3838F452-F248-11E8-B48F-1D18A9856A87 last_name: Maes orcid: 0000-0001-9642-1085 - first_name: Gabriele M. full_name: Wögenstein, Gabriele M. last_name: Wögenstein - first_name: Gloria full_name: Colombo, Gloria id: 3483CF6C-F248-11E8-B48F-1D18A9856A87 last_name: Colombo orcid: 0000-0001-9434-8902 - first_name: Raquel full_name: Casado Polanco, Raquel id: 15240fc1-dbcd-11ea-9d1d-ac5a786425fd last_name: Casado Polanco orcid: 0000-0001-8293-4568 - first_name: Sandra full_name: Siegert, Sandra id: 36ACD32E-F248-11E8-B48F-1D18A9856A87 last_name: Siegert orcid: 0000-0001-8635-0877 citation: ama: Maes ME, Wögenstein GM, Colombo G, Casado Polanco R, Siegert S. Optimizing AAV2/6 microglial targeting identified enhanced efficiency in the photoreceptor degenerative environment. Molecular Therapy - Methods and Clinical Development. 2021;23:210-224. doi:10.1016/j.omtm.2021.09.006 apa: Maes, M. E., Wögenstein, G. M., Colombo, G., Casado Polanco, R., & Siegert, S. (2021). Optimizing AAV2/6 microglial targeting identified enhanced efficiency in the photoreceptor degenerative environment. Molecular Therapy - Methods and Clinical Development. Elsevier. https://doi.org/10.1016/j.omtm.2021.09.006 chicago: Maes, Margaret E, Gabriele M. Wögenstein, Gloria Colombo, Raquel Casado Polanco, and Sandra Siegert. “Optimizing AAV2/6 Microglial Targeting Identified Enhanced Efficiency in the Photoreceptor Degenerative Environment.” Molecular Therapy - Methods and Clinical Development. Elsevier, 2021. https://doi.org/10.1016/j.omtm.2021.09.006. ieee: M. E. Maes, G. M. Wögenstein, G. Colombo, R. Casado Polanco, and S. Siegert, “Optimizing AAV2/6 microglial targeting identified enhanced efficiency in the photoreceptor degenerative environment,” Molecular Therapy - Methods and Clinical Development, vol. 23. Elsevier, pp. 210–224, 2021. ista: Maes ME, Wögenstein GM, Colombo G, Casado Polanco R, Siegert S. 2021. Optimizing AAV2/6 microglial targeting identified enhanced efficiency in the photoreceptor degenerative environment. Molecular Therapy - Methods and Clinical Development. 23, 210–224. mla: Maes, Margaret E., et al. “Optimizing AAV2/6 Microglial Targeting Identified Enhanced Efficiency in the Photoreceptor Degenerative Environment.” Molecular Therapy - Methods and Clinical Development, vol. 23, Elsevier, 2021, pp. 210–24, doi:10.1016/j.omtm.2021.09.006. short: M.E. Maes, G.M. Wögenstein, G. Colombo, R. Casado Polanco, S. Siegert, Molecular Therapy - Methods and Clinical Development 23 (2021) 210–224. date_created: 2022-01-23T23:01:28Z date_published: 2021-12-10T00:00:00Z date_updated: 2023-11-16T13:12:03Z day: '10' ddc: - '570' department: - _id: SaSi - _id: SiHi doi: 10.1016/j.omtm.2021.09.006 ec_funded: 1 external_id: isi: - '000748748500019' file: - access_level: open_access checksum: 77dc540e8011c5475031bdf6ccef20a6 content_type: application/pdf creator: cchlebak date_created: 2022-01-24T07:43:09Z date_updated: 2022-01-24T07:43:09Z file_id: '10657' file_name: 2021_MolTherMethodsClinDev_Maes.pdf file_size: 4794147 relation: main_file success: 1 file_date_updated: 2022-01-24T07:43:09Z has_accepted_license: '1' intvolume: ' 23' isi: 1 language: - iso: eng month: '12' oa: 1 oa_version: Published Version page: 210-224 project: - _id: 25D4A630-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '715571' name: Microglia action towards neuronal circuit formation and function in health and disease publication: Molecular Therapy - Methods and Clinical Development publication_identifier: eissn: - 2329-0501 publication_status: published publisher: Elsevier quality_controlled: '1' scopus_import: '1' status: public title: Optimizing AAV2/6 microglial targeting identified enhanced efficiency in the photoreceptor degenerative environment tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87 volume: 23 year: '2021' ... --- _id: '10565' abstract: - lang: eng text: 'Enzymatic digestion of the extracellular matrix with chondroitinase-ABC reinstates juvenile-like plasticity in the adult cortex as it also disassembles the perineuronal nets (PNNs). The disadvantage of the enzyme is that it must be applied intracerebrally and it degrades the ECM for several weeks. Here, we provide two minimally invasive and transient protocols for microglia-enabled PNN disassembly in mouse cortex: repeated treatment with ketamine-xylazine-acepromazine (KXA) anesthesia and 60-Hz light entrainment. We also discuss how to analyze PNNs within microglial endosomes-lysosomes. For complete details on the use and execution of this protocol, please refer to Venturino et al. (2021).' acknowledged_ssus: - _id: Bio acknowledgement: This research was supported by the European Research Council (grant 715571 to S.S.). We thank Rouven Schulz, Michael Schunn, Claudia Gold, Gabriel Krens, Sarah Gorkiewicz, Margaret Maes, Jürgen Siegert, Marco Benevento, and Sara Oakeley for comments on the manuscript and the IST Austria Bioimaging Facility for the technical support. article_number: '101012' article_processing_charge: Yes article_type: original author: - first_name: Alessandro full_name: Venturino, Alessandro id: 41CB84B2-F248-11E8-B48F-1D18A9856A87 last_name: Venturino orcid: 0000-0003-2356-9403 - first_name: Sandra full_name: Siegert, Sandra id: 36ACD32E-F248-11E8-B48F-1D18A9856A87 last_name: Siegert orcid: 0000-0001-8635-0877 citation: ama: Venturino A, Siegert S. Minimally invasive protocols and quantification for microglia-mediated perineuronal net disassembly in mouse brain. STAR Protocols. 2021;2(4). doi:10.1016/j.xpro.2021.101012 apa: Venturino, A., & Siegert, S. (2021). Minimally invasive protocols and quantification for microglia-mediated perineuronal net disassembly in mouse brain. STAR Protocols. Elsevier ; Cell Press. https://doi.org/10.1016/j.xpro.2021.101012 chicago: Venturino, Alessandro, and Sandra Siegert. “Minimally Invasive Protocols and Quantification for Microglia-Mediated Perineuronal Net Disassembly in Mouse Brain.” STAR Protocols. Elsevier ; Cell Press, 2021. https://doi.org/10.1016/j.xpro.2021.101012. ieee: A. Venturino and S. Siegert, “Minimally invasive protocols and quantification for microglia-mediated perineuronal net disassembly in mouse brain,” STAR Protocols, vol. 2, no. 4. Elsevier ; Cell Press, 2021. ista: Venturino A, Siegert S. 2021. Minimally invasive protocols and quantification for microglia-mediated perineuronal net disassembly in mouse brain. STAR Protocols. 2(4), 101012. mla: Venturino, Alessandro, and Sandra Siegert. “Minimally Invasive Protocols and Quantification for Microglia-Mediated Perineuronal Net Disassembly in Mouse Brain.” STAR Protocols, vol. 2, no. 4, 101012, Elsevier ; Cell Press, 2021, doi:10.1016/j.xpro.2021.101012. short: A. Venturino, S. Siegert, STAR Protocols 2 (2021). date_created: 2021-12-19T23:01:32Z date_published: 2021-12-17T00:00:00Z date_updated: 2023-11-16T13:11:04Z day: '17' ddc: - '573' department: - _id: SaSi doi: 10.1016/j.xpro.2021.101012 ec_funded: 1 file: - access_level: open_access checksum: 9ea2501056c5df99e84726b845e9b976 content_type: application/pdf creator: cchlebak date_created: 2021-12-20T08:58:40Z date_updated: 2021-12-20T08:58:40Z file_id: '10570' file_name: 2021_STARProt_Venturino.pdf file_size: 6207060 relation: main_file success: 1 file_date_updated: 2021-12-20T08:58:40Z has_accepted_license: '1' intvolume: ' 2' issue: '4' language: - iso: eng month: '12' oa: 1 oa_version: Published Version project: - _id: 25D4A630-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '715571' name: Microglia action towards neuronal circuit formation and function in health and disease publication: STAR Protocols publication_identifier: eissn: - 2666-1667 publication_status: published publisher: Elsevier ; Cell Press quality_controlled: '1' scopus_import: '1' status: public title: Minimally invasive protocols and quantification for microglia-mediated perineuronal net disassembly in mouse brain tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87 volume: 2 year: '2021' ... --- _id: '10321' abstract: - lang: eng text: Mosaic analysis with double markers (MADM) technology enables the generation of genetic mosaic tissue in mice. MADM enables concomitant fluorescent cell labeling and introduction of a mutation of a gene of interest with single-cell resolution. This protocol highlights major steps for the generation of genetic mosaic tissue and the isolation and processing of respective tissues for downstream histological analysis. For complete details on the use and execution of this protocol, please refer to Contreras et al. (2021). acknowledged_ssus: - _id: Bio - _id: PreCl acknowledgement: This research was supported by the Scientific Service Units (SSU) at IST Austria through resources provided by the Bioimaging (BIF) and Preclinical Facilities (PCF). We particularly thank Mohammad Goudarzi for assistance with photography of mouse perfusion and dissection. N.A. received support from FWF Firnberg-Programm (T 1031). This work was also supported by IST Austria institutional funds; FWF SFB F78 to S.H.; and the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement no. 725780 LinPro) to S.H. article_number: '100939' article_processing_charge: Yes article_type: original author: - first_name: Nicole full_name: Amberg, Nicole id: 4CD6AAC6-F248-11E8-B48F-1D18A9856A87 last_name: Amberg orcid: 0000-0002-3183-8207 - first_name: Simon full_name: Hippenmeyer, Simon id: 37B36620-F248-11E8-B48F-1D18A9856A87 last_name: Hippenmeyer orcid: 0000-0003-2279-1061 citation: ama: Amberg N, Hippenmeyer S. Genetic mosaic dissection of candidate genes in mice using mosaic analysis with double markers. STAR Protocols. 2021;2(4). doi:10.1016/j.xpro.2021.100939 apa: Amberg, N., & Hippenmeyer, S. (2021). Genetic mosaic dissection of candidate genes in mice using mosaic analysis with double markers. STAR Protocols. Cell Press. https://doi.org/10.1016/j.xpro.2021.100939 chicago: Amberg, Nicole, and Simon Hippenmeyer. “Genetic Mosaic Dissection of Candidate Genes in Mice Using Mosaic Analysis with Double Markers.” STAR Protocols. Cell Press, 2021. https://doi.org/10.1016/j.xpro.2021.100939. ieee: N. Amberg and S. Hippenmeyer, “Genetic mosaic dissection of candidate genes in mice using mosaic analysis with double markers,” STAR Protocols, vol. 2, no. 4. Cell Press, 2021. ista: Amberg N, Hippenmeyer S. 2021. Genetic mosaic dissection of candidate genes in mice using mosaic analysis with double markers. STAR Protocols. 2(4), 100939. mla: Amberg, Nicole, and Simon Hippenmeyer. “Genetic Mosaic Dissection of Candidate Genes in Mice Using Mosaic Analysis with Double Markers.” STAR Protocols, vol. 2, no. 4, 100939, Cell Press, 2021, doi:10.1016/j.xpro.2021.100939. short: N. Amberg, S. Hippenmeyer, STAR Protocols 2 (2021). date_created: 2021-11-21T23:01:28Z date_published: 2021-11-10T00:00:00Z date_updated: 2023-11-16T13:08:03Z day: '10' ddc: - '573' department: - _id: SiHi doi: 10.1016/j.xpro.2021.100939 ec_funded: 1 file: - access_level: open_access checksum: 9e3f6d06bf583e7a8b6a9e9a60500a28 content_type: application/pdf creator: cchlebak date_created: 2021-11-22T08:23:58Z date_updated: 2021-11-22T08:23:58Z file_id: '10329' file_name: 2021_STARProtocols_Amberg.pdf file_size: 7309464 relation: main_file success: 1 file_date_updated: 2021-11-22T08:23:58Z has_accepted_license: '1' intvolume: ' 2' issue: '4' language: - iso: eng month: '11' oa: 1 oa_version: Published Version project: - _id: 260018B0-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '725780' name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development - _id: 268F8446-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: T0101031 name: Role of Eed in neural stem cell lineage progression - _id: 059F6AB4-7A3F-11EA-A408-12923DDC885E grant_number: F07805 name: Molecular Mechanisms of Neural Stem Cell Lineage Progression publication: STAR Protocols publication_identifier: eissn: - 2666-1667 publication_status: published publisher: Cell Press quality_controlled: '1' scopus_import: '1' status: public title: Genetic mosaic dissection of candidate genes in mice using mosaic analysis with double markers tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 3E5EF7F0-F248-11E8-B48F-1D18A9856A87 volume: 2 year: '2021' ... --- _id: '10290' abstract: - lang: eng text: A precise quantitative description of the ultrastructural characteristics underlying biological mechanisms is often key to their understanding. This is particularly true for dynamic extra- and intracellular filamentous assemblies, playing a role in cell motility, cell integrity, cytokinesis, tissue formation and maintenance. For example, genetic manipulation or modulation of actin regulatory proteins frequently manifests in changes of the morphology, dynamics, and ultrastructural architecture of actin filament-rich cell peripheral structures, such as lamellipodia or filopodia. However, the observed ultrastructural effects often remain subtle and require sufficiently large datasets for appropriate quantitative analysis. The acquisition of such large datasets has been enabled by recent advances in high-throughput cryo-electron tomography (cryo-ET) methods. This also necessitates the development of complementary approaches to maximize the extraction of relevant biological information. We have developed a computational toolbox for the semi-automatic quantification of segmented and vectorized filamentous networks from pre-processed cryo-electron tomograms, facilitating the analysis and cross-comparison of multiple experimental conditions. GUI-based components simplify the processing of data and allow users to obtain a large number of ultrastructural parameters describing filamentous assemblies. We demonstrate the feasibility of this workflow by analyzing cryo-ET data of untreated and chemically perturbed branched actin filament networks and that of parallel actin filament arrays. In principle, the computational toolbox presented here is applicable for data analysis comprising any type of filaments in regular (i.e. parallel) or random arrangement. We show that it can ease the identification of key differences between experimental groups and facilitate the in-depth analysis of ultrastructural data in a time-efficient manner. acknowledged_ssus: - _id: ScienComp - _id: LifeSc - _id: Bio - _id: EM-Fac acknowledgement: 'This research was supported by the Scientific Service Units (SSUs) of IST Austria through resources provided by Scientific Computing (SciComp), the Life Science Facility (LSF), the BioImaging Facility (BIF), and the Electron Microscopy Facility (EMF). We also thank Victor-Valentin Hodirnau for help with cryo-ET data acquisition. The authors acknowledge support from IST Austria and from the Austrian Science Fund (FWF): M02495 to G.D. and Austrian Science Fund (FWF): P33367 to F.K.M.S.' article_number: '107808' article_processing_charge: Yes (via OA deal) article_type: original author: - first_name: Georgi A full_name: Dimchev, Georgi A id: 38C393BE-F248-11E8-B48F-1D18A9856A87 last_name: Dimchev orcid: 0000-0001-8370-6161 - first_name: Behnam full_name: Amiri, Behnam last_name: Amiri - first_name: Florian full_name: Fäßler, Florian id: 404F5528-F248-11E8-B48F-1D18A9856A87 last_name: Fäßler orcid: 0000-0001-7149-769X - first_name: Martin full_name: Falcke, Martin last_name: Falcke - first_name: Florian KM full_name: Schur, Florian KM id: 48AD8942-F248-11E8-B48F-1D18A9856A87 last_name: Schur orcid: 0000-0003-4790-8078 citation: ama: Dimchev GA, Amiri B, Fäßler F, Falcke M, Schur FK. Computational toolbox for ultrastructural quantitative analysis of filament networks in cryo-ET data. Journal of Structural Biology. 2021;213(4). doi:10.1016/j.jsb.2021.107808 apa: Dimchev, G. A., Amiri, B., Fäßler, F., Falcke, M., & Schur, F. K. (2021). Computational toolbox for ultrastructural quantitative analysis of filament networks in cryo-ET data. Journal of Structural Biology. Elsevier . https://doi.org/10.1016/j.jsb.2021.107808 chicago: Dimchev, Georgi A, Behnam Amiri, Florian Fäßler, Martin Falcke, and Florian KM Schur. “Computational Toolbox for Ultrastructural Quantitative Analysis of Filament Networks in Cryo-ET Data.” Journal of Structural Biology. Elsevier , 2021. https://doi.org/10.1016/j.jsb.2021.107808. ieee: G. A. Dimchev, B. Amiri, F. Fäßler, M. Falcke, and F. K. Schur, “Computational toolbox for ultrastructural quantitative analysis of filament networks in cryo-ET data,” Journal of Structural Biology, vol. 213, no. 4. Elsevier , 2021. ista: Dimchev GA, Amiri B, Fäßler F, Falcke M, Schur FK. 2021. Computational toolbox for ultrastructural quantitative analysis of filament networks in cryo-ET data. Journal of Structural Biology. 213(4), 107808. mla: Dimchev, Georgi A., et al. “Computational Toolbox for Ultrastructural Quantitative Analysis of Filament Networks in Cryo-ET Data.” Journal of Structural Biology, vol. 213, no. 4, 107808, Elsevier , 2021, doi:10.1016/j.jsb.2021.107808. short: G.A. Dimchev, B. Amiri, F. Fäßler, M. Falcke, F.K. Schur, Journal of Structural Biology 213 (2021). date_created: 2021-11-15T12:21:42Z date_published: 2021-11-03T00:00:00Z date_updated: 2023-11-21T08:36:02Z day: '03' ddc: - '572' department: - _id: FlSc doi: 10.1016/j.jsb.2021.107808 external_id: isi: - '000720259500002' file: - access_level: open_access checksum: 6b209e4d44775d4e02b50f78982c15fa content_type: application/pdf creator: cchlebak date_created: 2021-11-15T13:11:27Z date_updated: 2021-11-15T13:11:27Z file_id: '10291' file_name: 2021_JournalStructBiol_Dimchev.pdf file_size: 16818304 relation: main_file success: 1 file_date_updated: 2021-11-15T13:11:27Z has_accepted_license: '1' intvolume: ' 213' isi: 1 issue: '4' keyword: - Structural Biology language: - iso: eng month: '11' oa: 1 oa_version: Published Version project: - _id: 9B954C5C-BA93-11EA-9121-9846C619BF3A grant_number: P33367 name: Structure and isoform diversity of the Arp2/3 complex - _id: 2674F658-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: M02495 name: Protein structure and function in filopodia across scales publication: Journal of Structural Biology publication_identifier: issn: - 1047-8477 publication_status: published publisher: 'Elsevier ' quality_controlled: '1' related_material: record: - id: '14502' relation: software status: public scopus_import: '1' status: public title: Computational toolbox for ultrastructural quantitative analysis of filament networks in cryo-ET data tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: journal_article user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 volume: 213 year: '2021' ... --- _id: '9969' abstract: - lang: eng text: 'Payment channel networks are a promising approach to improve the scalability of cryptocurrencies: they allow to perform transactions in a peer-to-peer fashion, along multihop routes in the network, without requiring consensus on the blockchain. However, during the discovery of cost-efficient routes for the transaction, critical information may be revealed about the transacting entities. This paper initiates the study of privacy-preserving route discovery mechanisms for payment channel networks. In particular, we present LightPIR, an approach which allows a client to learn the shortest (or cheapest in terms of fees) path between two nodes without revealing any information about the endpoints of the transaction to the servers. The two main observations which allow for an efficient solution in LightPIR are that: (1) surprisingly, hub labelling algorithms – which were developed to preprocess “street network like” graphs so one can later efficiently compute shortest paths – also perform well for the graphs underlying payment channel networks, and that (2) hub labelling algorithms can be conveniently combined with private information retrieval. LightPIR relies on a simple hub labeling heuristic on top of existing hub labeling algorithms which leverages the specific topological features of cryptocurrency networks to further minimize storage and bandwidth overheads. In a case study considering the Lightning network, we show that our approach is an order of magnitude more efficient compared to a privacy-preserving baseline based on using private information retrieval on a database that stores all pairs shortest paths.' article_processing_charge: No author: - first_name: Krzysztof Z full_name: Pietrzak, Krzysztof Z id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87 last_name: Pietrzak orcid: 0000-0002-9139-1654 - first_name: Iosif full_name: Salem, Iosif last_name: Salem - first_name: Stefan full_name: Schmid, Stefan last_name: Schmid - first_name: Michelle X full_name: Yeo, Michelle X id: 2D82B818-F248-11E8-B48F-1D18A9856A87 last_name: Yeo citation: ama: 'Pietrzak KZ, Salem I, Schmid S, Yeo MX. LightPIR: Privacy-preserving route discovery for payment channel networks. In: IEEE; 2021. doi:10.23919/IFIPNetworking52078.2021.9472205' apa: 'Pietrzak, K. Z., Salem, I., Schmid, S., & Yeo, M. X. (2021). LightPIR: Privacy-preserving route discovery for payment channel networks. Presented at the 2021 IFIP Networking Conference (IFIP Networking), Espoo and Helsinki, Finland: IEEE. https://doi.org/10.23919/IFIPNetworking52078.2021.9472205' chicago: 'Pietrzak, Krzysztof Z, Iosif Salem, Stefan Schmid, and Michelle X Yeo. “LightPIR: Privacy-Preserving Route Discovery for Payment Channel Networks.” IEEE, 2021. https://doi.org/10.23919/IFIPNetworking52078.2021.9472205.' ieee: 'K. Z. Pietrzak, I. Salem, S. Schmid, and M. X. Yeo, “LightPIR: Privacy-preserving route discovery for payment channel networks,” presented at the 2021 IFIP Networking Conference (IFIP Networking), Espoo and Helsinki, Finland, 2021.' ista: 'Pietrzak KZ, Salem I, Schmid S, Yeo MX. 2021. LightPIR: Privacy-preserving route discovery for payment channel networks. 2021 IFIP Networking Conference (IFIP Networking).' mla: 'Pietrzak, Krzysztof Z., et al. LightPIR: Privacy-Preserving Route Discovery for Payment Channel Networks. IEEE, 2021, doi:10.23919/IFIPNetworking52078.2021.9472205.' short: K.Z. Pietrzak, I. Salem, S. Schmid, M.X. Yeo, in:, IEEE, 2021. conference: end_date: 2021-06-24 location: Espoo and Helsinki, Finland name: 2021 IFIP Networking Conference (IFIP Networking) start_date: 2021-06-21 date_created: 2021-08-29T22:01:16Z date_published: 2021-06-21T00:00:00Z date_updated: 2023-11-30T10:54:50Z day: '21' department: - _id: KrPi doi: 10.23919/IFIPNetworking52078.2021.9472205 ec_funded: 1 external_id: arxiv: - '2104.04293' isi: - '000853016800008' isi: 1 language: - iso: eng main_file_link: - open_access: '1' url: https://arxiv.org/abs/2104.04293 month: '06' oa: 1 oa_version: Submitted Version project: - _id: 258AA5B2-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '682815' name: Teaching Old Crypto New Tricks publication_identifier: eisbn: - 978-3-9031-7639-3 eissn: - 1861-2288 isbn: - 978-1-6654-4501-6 publication_status: published publisher: IEEE quality_controlled: '1' related_material: record: - id: '14506' relation: dissertation_contains status: public scopus_import: '1' status: public title: 'LightPIR: Privacy-preserving route discovery for payment channel networks' type: conference user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8 year: '2021' ...