---
_id: '10545'
abstract:
- lang: eng
text: Classical models with complex energy landscapes represent a perspective avenue
for the near-term application of quantum simulators. Until now, many theoretical
works studied the performance of quantum algorithms for models with a unique ground
state. However, when the classical problem is in a so-called clustering phase,
the ground state manifold is highly degenerate. As an example, we consider a 3-XORSAT
model defined on simple hypergraphs. The degeneracy of classical ground state
manifold translates into the emergence of an extensive number of Z2 symmetries,
which remain intact even in the presence of a quantum transverse magnetic field.
We establish a general duality approach that restricts the quantum problem to
a given sector of conserved Z2 charges and use it to study how the outcome of
the quantum adiabatic algorithm depends on the hypergraph geometry. We show that
the tree hypergraph which corresponds to a classically solvable instance of the
3-XORSAT problem features a constant gap, whereas the closed hypergraph encounters
a second-order phase transition with a gap vanishing as a power-law in the problem
size. The duality developed in this work provides a practical tool for studies
of quantum models with classically degenerate energy manifold and reveals potential
connections between glasses and gauge theories.
acknowledgement: We would like to thank S. De Nicola, A. Michaidilis, T. Gulden, Y.
Nez-Fernndez, P. Brighi, and S. Sack for fruitful discussions and valuable feedback
on the manuscript. M.S. acknowledges useful discussions with E. Altman, L. Cugliandolo,
and C. Laumann. We acknowledge support from the European Research Council (ERC)
under the European Union's Horizon 2020 Research and Innovation Programme Grant
Agreement No. 850899.
article_number: '062423'
article_processing_charge: No
article_type: original
author:
- first_name: Raimel A
full_name: Medina Ramos, Raimel A
id: CE680B90-D85A-11E9-B684-C920E6697425
last_name: Medina Ramos
orcid: 0000-0002-5383-2869
- first_name: Maksym
full_name: Serbyn, Maksym
id: 47809E7E-F248-11E8-B48F-1D18A9856A87
last_name: Serbyn
orcid: 0000-0002-2399-5827
citation:
ama: Medina Ramos RA, Serbyn M. Duality approach to quantum annealing of the 3-variable
exclusive-or satisfiability problem (3-XORSAT). Physical Review A. 2021;104(6).
doi:10.1103/physreva.104.062423
apa: Medina Ramos, R. A., & Serbyn, M. (2021). Duality approach to quantum annealing
of the 3-variable exclusive-or satisfiability problem (3-XORSAT). Physical
Review A. American Physical Society. https://doi.org/10.1103/physreva.104.062423
chicago: Medina Ramos, Raimel A, and Maksym Serbyn. “Duality Approach to Quantum
Annealing of the 3-Variable Exclusive-or Satisfiability Problem (3-XORSAT).” Physical
Review A. American Physical Society, 2021. https://doi.org/10.1103/physreva.104.062423.
ieee: R. A. Medina Ramos and M. Serbyn, “Duality approach to quantum annealing of
the 3-variable exclusive-or satisfiability problem (3-XORSAT),” Physical Review
A, vol. 104, no. 6. American Physical Society, 2021.
ista: Medina Ramos RA, Serbyn M. 2021. Duality approach to quantum annealing of
the 3-variable exclusive-or satisfiability problem (3-XORSAT). Physical Review
A. 104(6), 062423.
mla: Medina Ramos, Raimel A., and Maksym Serbyn. “Duality Approach to Quantum Annealing
of the 3-Variable Exclusive-or Satisfiability Problem (3-XORSAT).” Physical
Review A, vol. 104, no. 6, 062423, American Physical Society, 2021, doi:10.1103/physreva.104.062423.
short: R.A. Medina Ramos, M. Serbyn, Physical Review A 104 (2021).
date_created: 2021-12-14T20:46:07Z
date_published: 2021-12-14T00:00:00Z
date_updated: 2023-08-17T06:22:49Z
day: '14'
department:
- _id: MaSe
doi: 10.1103/physreva.104.062423
ec_funded: 1
external_id:
arxiv:
- '2106.06344'
isi:
- '000753659200004'
intvolume: ' 104'
isi: 1
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2106.06344
month: '12'
oa: 1
oa_version: Preprint
project:
- _id: 23841C26-32DE-11EA-91FC-C7463DDC885E
call_identifier: H2020
grant_number: '850899'
name: 'Non-Ergodic Quantum Matter: Universality, Dynamics and Control'
publication: Physical Review A
publication_identifier:
eissn:
- 2469-9934
issn:
- 2469-9926
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: Duality approach to quantum annealing of the 3-variable exclusive-or satisfiability
problem (3-XORSAT)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 104
year: '2021'
...
---
_id: '10554'
abstract:
- lang: eng
text: 'We present DAG-Rider, the first asynchronous Byzantine Atomic Broadcast protocol
that achieves optimal resilience, optimal amortized communication complexity,
and optimal time complexity. DAG-Rider is post-quantum safe and ensures that all
values proposed by correct processes eventually get delivered. We construct DAG-Rider
in two layers: In the first layer, processes reliably broadcast their proposals
and build a structured Directed Acyclic Graph (DAG) of the communication among
them. In the second layer, processes locally observe their DAGs and totally order
all proposals with no extra communication.'
acknowledgement: "Oded Naor is grateful to the Technion Hiroshi Fujiwara Cyber-Security
Research Center for providing a research grant. Part of Oded’s work was done while
at Novi Research. This work was funded by the Novi team at Facebook. We also wish
to thank the Novi Research team for valuable feedback, and in particular George
Danezis, Alberto Sonnino, and Dahlia Malkhi.\r\n"
article_processing_charge: No
author:
- first_name: Idit
full_name: Keidar, Idit
last_name: Keidar
- first_name: Eleftherios
full_name: Kokoris Kogias, Eleftherios
id: f5983044-d7ef-11ea-ac6d-fd1430a26d30
last_name: Kokoris Kogias
- first_name: Oded
full_name: Naor, Oded
last_name: Naor
- first_name: Alexander
full_name: Spiegelman, Alexander
last_name: Spiegelman
citation:
ama: 'Keidar I, Kokoris Kogias E, Naor O, Spiegelman A. All You Need is DAG. In:
Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing.
Association for Computing Machinery; 2021:165-175. doi:10.1145/3465084.3467905'
apa: 'Keidar, I., Kokoris Kogias, E., Naor, O., & Spiegelman, A. (2021). All
You Need is DAG. In Proceedings of the 2021 ACM Symposium on Principles of
Distributed Computing (pp. 165–175). Virtual, Italy: Association for Computing
Machinery. https://doi.org/10.1145/3465084.3467905'
chicago: Keidar, Idit, Eleftherios Kokoris Kogias, Oded Naor, and Alexander Spiegelman.
“All You Need Is DAG.” In Proceedings of the 2021 ACM Symposium on Principles
of Distributed Computing, 165–75. Association for Computing Machinery, 2021.
https://doi.org/10.1145/3465084.3467905.
ieee: I. Keidar, E. Kokoris Kogias, O. Naor, and A. Spiegelman, “All You Need is
DAG,” in Proceedings of the 2021 ACM Symposium on Principles of Distributed
Computing, Virtual, Italy, 2021, pp. 165–175.
ista: 'Keidar I, Kokoris Kogias E, Naor O, Spiegelman A. 2021. All You Need is DAG.
Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing.
PODC: Principles of Distributed Computing, 165–175.'
mla: Keidar, Idit, et al. “All You Need Is DAG.” Proceedings of the 2021 ACM
Symposium on Principles of Distributed Computing, Association for Computing
Machinery, 2021, pp. 165–75, doi:10.1145/3465084.3467905.
short: I. Keidar, E. Kokoris Kogias, O. Naor, A. Spiegelman, in:, Proceedings of
the 2021 ACM Symposium on Principles of Distributed Computing, Association for
Computing Machinery, 2021, pp. 165–175.
conference:
end_date: 2021-07-30
location: Virtual, Italy
name: 'PODC: Principles of Distributed Computing'
start_date: 2021-07-26
date_created: 2021-12-16T13:21:13Z
date_published: 2021-07-21T00:00:00Z
date_updated: 2023-08-17T06:24:44Z
day: '21'
department:
- _id: ElKo
doi: 10.1145/3465084.3467905
external_id:
arxiv:
- '2102.08325'
isi:
- '000744439800016'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2102.08325
month: '07'
oa: 1
oa_version: Preprint
page: 165-175
publication: Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing
publication_identifier:
isbn:
- 978-1-4503-8548-0
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: All You Need is DAG
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
year: '2021'
...
---
_id: '10568'
abstract:
- lang: eng
text: Genetic adaptation and phenotypic plasticity facilitate the migration into
new habitats and enable organisms to cope with a rapidly changing environment.
In contrast to genetic adaptation that spans multiple generations as an evolutionary
process, phenotypic plasticity allows acclimation within the life-time of an organism.
Genetic adaptation and phenotypic plasticity are usually studied in isolation,
however, only by including their interactive impact, we can understand acclimation
and adaptation in nature. We aimed to explore the contribution of adaptation and
plasticity in coping with an abiotic (salinity) and a biotic (Vibrio bacteria)
stressor using six different populations of the broad-nosed pipefish Syngnathus
typhle that originated from either high [14–17 Practical Salinity Unit (PSU)]
or low (7–11 PSU) saline environments along the German coastline of the Baltic
Sea. We exposed wild caught animals, to either high (15 PSU) or low (7 PSU) salinity,
representing native and novel salinity conditions and allowed animals to mate.
After male pregnancy, offspring was split and each half was exposed to one of
the two salinities and infected with Vibrio alginolyticus bacteria that were evolved
at either of the two salinities in a fully reciprocal design. We investigated
life-history traits of fathers and expression of 47 target genes in mothers and
offspring. Pregnant males originating from high salinity exposed to low salinity
were highly susceptible to opportunistic fungi infections resulting in decreased
offspring size and number. In contrast, no signs of fungal infection were identified
in fathers originating from low saline conditions suggesting that genetic adaptation
has the potential to overcome the challenges encountered at low salinity. Offspring
from parents with low saline origin survived better at low salinity suggesting
genetic adaptation to low salinity. In addition, gene expression analyses of juveniles
indicated patterns of local adaptation, trans-generational plasticity and developmental
plasticity. In conclusion, our study suggests that pipefish are locally adapted
to the low salinity in their environment, however, they are retaining phenotypic
plasticity, which allows them to also cope with ancestral salinity levels and
prevailing pathogens.
acknowledgement: We are grateful for the help of Kristina Dauven, Andreas Ebner, Janina
Röckner, and Paulina Urban for fish collection in the field and fish maintenance.
Furthermore, we thank Fabian Wendt for setting up the aquaria system and Tatjana
Liese, Paulina Urban, Jakob Gismann, and Thorsten Reusch for support with DNA extraction
and analysis of pipefish population structure. The authors acknowledge support of
Isabel Tanger, Agnes Piecyk, Jonas Müller, Grace Walls, Sebastian Albrecht, Julia
Böge, and Julia Stefanschitz for their support in preparing cDNA and running of
Fluidigm chips. A special thank goes to Diana Gill for general lab support, ordering
materials and just being the good spirit of our molecular lab, to Till Bayer for
bioinformatics support and to Melanie Heckwolf for fruitful discussion and feedback
on the manuscript. HG is very grateful for inspirational office space with ocean
view provided by Lisa Hentschel and family. This manuscript has been released as
a pre-print at BIORXIV.
article_number: '626442'
article_processing_charge: No
article_type: original
author:
- first_name: Henry
full_name: Goehlich, Henry
last_name: Goehlich
- first_name: Linda
full_name: Sartoris, Linda
id: 2B9284CA-F248-11E8-B48F-1D18A9856A87
last_name: Sartoris
- first_name: Kim-Sara
full_name: Wagner, Kim-Sara
last_name: Wagner
- first_name: Carolin C.
full_name: Wendling, Carolin C.
last_name: Wendling
- first_name: Olivia
full_name: Roth, Olivia
last_name: Roth
citation:
ama: Goehlich H, Sartoris L, Wagner K-S, Wendling CC, Roth O. Pipefish locally adapted
to low salinity in the Baltic Sea retain phenotypic plasticity to cope with ancestral
salinity levels. Frontiers in Ecology and Evolution. 2021;9. doi:10.3389/fevo.2021.626442
apa: Goehlich, H., Sartoris, L., Wagner, K.-S., Wendling, C. C., & Roth, O.
(2021). Pipefish locally adapted to low salinity in the Baltic Sea retain phenotypic
plasticity to cope with ancestral salinity levels. Frontiers in Ecology and
Evolution. Frontiers Media. https://doi.org/10.3389/fevo.2021.626442
chicago: Goehlich, Henry, Linda Sartoris, Kim-Sara Wagner, Carolin C. Wendling,
and Olivia Roth. “Pipefish Locally Adapted to Low Salinity in the Baltic Sea Retain
Phenotypic Plasticity to Cope with Ancestral Salinity Levels.” Frontiers in
Ecology and Evolution. Frontiers Media, 2021. https://doi.org/10.3389/fevo.2021.626442.
ieee: H. Goehlich, L. Sartoris, K.-S. Wagner, C. C. Wendling, and O. Roth, “Pipefish
locally adapted to low salinity in the Baltic Sea retain phenotypic plasticity
to cope with ancestral salinity levels,” Frontiers in Ecology and Evolution,
vol. 9. Frontiers Media, 2021.
ista: Goehlich H, Sartoris L, Wagner K-S, Wendling CC, Roth O. 2021. Pipefish locally
adapted to low salinity in the Baltic Sea retain phenotypic plasticity to cope
with ancestral salinity levels. Frontiers in Ecology and Evolution. 9, 626442.
mla: Goehlich, Henry, et al. “Pipefish Locally Adapted to Low Salinity in the Baltic
Sea Retain Phenotypic Plasticity to Cope with Ancestral Salinity Levels.” Frontiers
in Ecology and Evolution, vol. 9, 626442, Frontiers Media, 2021, doi:10.3389/fevo.2021.626442.
short: H. Goehlich, L. Sartoris, K.-S. Wagner, C.C. Wendling, O. Roth, Frontiers
in Ecology and Evolution 9 (2021).
date_created: 2021-12-20T07:53:19Z
date_published: 2021-03-25T00:00:00Z
date_updated: 2023-08-17T06:27:22Z
day: '25'
ddc:
- '597'
department:
- _id: SyCr
doi: 10.3389/fevo.2021.626442
external_id:
isi:
- '000637736300001'
file:
- access_level: open_access
checksum: 8d6e2b767bb0240a9b5a3a3555be51fd
content_type: application/pdf
creator: alisjak
date_created: 2021-12-20T10:44:20Z
date_updated: 2021-12-20T10:44:20Z
file_id: '10572'
file_name: 2021_Frontiers_Goehlich.pdf
file_size: 3175085
relation: main_file
success: 1
file_date_updated: 2021-12-20T10:44:20Z
has_accepted_license: '1'
intvolume: ' 9'
isi: 1
keyword:
- ecology
- evolution
- behavior and systematics
- trans-generational plasticity
- genetic adaptation
- local adaptation
- phenotypic plasticity
- Baltic Sea
- climate change
- salinity
- syngnathids
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
publication: Frontiers in Ecology and Evolution
publication_identifier:
issn:
- 2296-701X
publication_status: published
publisher: Frontiers Media
quality_controlled: '1'
scopus_import: '1'
status: public
title: Pipefish locally adapted to low salinity in the Baltic Sea retain phenotypic
plasticity to cope with ancestral salinity levels
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 9
year: '2021'
...
---
_id: '10586'
abstract:
- lang: eng
text: A facile approach for developing an interfacial solar evaporator by heat localization
of solar-thermal energy conversion at water-air liquid composed by in-situ polymerization
of Fe2O3 nanoparticles (Fe2O3@PPy) deposited over a facial sponge is proposed.
The demonstrated system consists of a floating solar receiver having a vertically
cross-linked microchannel for wicking up saline water. The in situ polymerized
Fe2O3@PPy interfacial layer promotes diffuse reflection and its rough black surface
allows Omni-directional solar absorption (94%) and facilitates efficient thermal
localization at the water/air interface and offers a defect-rich surface to promote
heat localization (41.9 °C) and excellent thermal management due to cellulosic
content. The self-floating composite foam reveals continuous vapors generation
at a rate of 1.52 kg m−2 h−1 under one 1 kW m−2 and profound evaporating efficiency
(95%) without heat losses that dissipates in its surroundings. Indeed, long-term
evaporation experiments reveal the negligible disparity in continuous evaporation
rate (33.84 kg m−2/8.3 h) receiving two sun solar intensity, and ensures the stability
of the device under intense seawater conditions synchronized with excellent salt
rejection potential. More importantly, Raman spectroscopy investigation validates
the orange dye rejection via Fe2O3@PPy solar evaporator. The combined advantages
of high efficiency, self-floating capability, multimedia rejection, low cost,
and this configuration are promising for producing large-scale solar steam generating
systems appropriate for commercial clean water yield due to their scalable fabrication.
acknowledgement: The authors extend their appreciation to King Saud University for
funding this work through Researchers Supporting Project number (RSP-2021/387),
King Saud University, Riyadh, Saudi Arabia.
alternative_title:
- Hybrid and Composite Crystalline Materials
article_number: '1509'
article_processing_charge: No
article_type: original
author:
- first_name: Yuzheng
full_name: Lu, Yuzheng
last_name: Lu
- first_name: Naila
full_name: Arshad, Naila
last_name: Arshad
- first_name: Muhammad Sultan
full_name: Irshad, Muhammad Sultan
last_name: Irshad
- first_name: Iftikhar
full_name: Ahmed, Iftikhar
last_name: Ahmed
- first_name: Shafiq
full_name: Ahmad, Shafiq
last_name: Ahmad
- first_name: Lina Abdullah
full_name: Alshahrani, Lina Abdullah
last_name: Alshahrani
- first_name: Muhammad
full_name: Yousaf, Muhammad
last_name: Yousaf
- first_name: Abdelaty Edrees
full_name: Sayed, Abdelaty Edrees
last_name: Sayed
- first_name: Muhammad
full_name: Nauman, Muhammad
id: 32c21954-2022-11eb-9d5f-af9f93c24e71
last_name: Nauman
orcid: 0000-0002-2111-4846
citation:
ama: Lu Y, Arshad N, Irshad MS, et al. Fe2O3 nanoparticles deposited over self-floating
facial sponge for facile interfacial seawater solar desalination. Crystals.
2021;11(12). doi:10.3390/cryst11121509
apa: Lu, Y., Arshad, N., Irshad, M. S., Ahmed, I., Ahmad, S., Alshahrani, L. A.,
… Nauman, M. (2021). Fe2O3 nanoparticles deposited over self-floating facial sponge
for facile interfacial seawater solar desalination. Crystals. MDPI. https://doi.org/10.3390/cryst11121509
chicago: Lu, Yuzheng, Naila Arshad, Muhammad Sultan Irshad, Iftikhar Ahmed, Shafiq
Ahmad, Lina Abdullah Alshahrani, Muhammad Yousaf, Abdelaty Edrees Sayed, and Muhammad
Nauman. “Fe2O3 Nanoparticles Deposited over Self-Floating Facial Sponge for Facile
Interfacial Seawater Solar Desalination.” Crystals. MDPI, 2021. https://doi.org/10.3390/cryst11121509.
ieee: Y. Lu et al., “Fe2O3 nanoparticles deposited over self-floating facial
sponge for facile interfacial seawater solar desalination,” Crystals, vol.
11, no. 12. MDPI, 2021.
ista: Lu Y, Arshad N, Irshad MS, Ahmed I, Ahmad S, Alshahrani LA, Yousaf M, Sayed
AE, Nauman M. 2021. Fe2O3 nanoparticles deposited over self-floating facial sponge
for facile interfacial seawater solar desalination. Crystals. 11(12), 1509.
mla: Lu, Yuzheng, et al. “Fe2O3 Nanoparticles Deposited over Self-Floating Facial
Sponge for Facile Interfacial Seawater Solar Desalination.” Crystals, vol.
11, no. 12, 1509, MDPI, 2021, doi:10.3390/cryst11121509.
short: Y. Lu, N. Arshad, M.S. Irshad, I. Ahmed, S. Ahmad, L.A. Alshahrani, M. Yousaf,
A.E. Sayed, M. Nauman, Crystals 11 (2021).
date_created: 2022-01-02T23:01:34Z
date_published: 2021-12-03T00:00:00Z
date_updated: 2023-08-17T06:31:20Z
day: '03'
ddc:
- '620'
department:
- _id: KiMo
doi: 10.3390/cryst11121509
external_id:
isi:
- '000736602200001'
file:
- access_level: open_access
checksum: 668e9d777608ce0a3bc2e305133bd06b
content_type: application/pdf
creator: alisjak
date_created: 2022-01-03T09:46:53Z
date_updated: 2022-01-03T09:46:53Z
file_id: '10591'
file_name: 2021_Crystals_Yuzheng.pdf
file_size: 4569639
relation: main_file
success: 1
file_date_updated: 2022-01-03T09:46:53Z
has_accepted_license: '1'
intvolume: ' 11'
isi: 1
issue: '12'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication: Crystals
publication_identifier:
eissn:
- 2073-4352
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Fe2O3 nanoparticles deposited over self-floating facial sponge for facile interfacial
seawater solar desalination
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11
year: '2021'
...
---
_id: '10569'
abstract:
- lang: eng
text: 'For animals to survive until reproduction, it is crucial that juveniles successfully
detect potential predators and respond with appropriate behavior. The recognition
of cues originating from predators can be innate or learned. Cues of various modalities
might be used alone or in multi-modal combinations to detect and distinguish predators
but studies investigating multi-modal integration in predator avoidance are scarce.
Here, we used wild, naive tadpoles of the Neotropical poison frog Allobates femoralis
( Boulenger, 1884) to test their reaction to cues with two modalities from two
different sympatrically occurring potential predators: heterospecific predatory
Dendrobates tinctorius tadpoles and dragonfly larvae. We presented A. femoralis
tadpoles with olfactory or visual cues, or a combination of the two, and compared
their reaction to a water control in a between-individual design. In our trials,
A. femoralis tadpoles reacted to multi-modal stimuli (a combination of visual
and chemical information) originating from dragonfly larvae with avoidance but
showed no reaction to uni-modal cues or cues from heterospecific tadpoles. In
addition, visual cues from conspecifics increased swimming activity while cues
from predators had no effect on tadpole activity. Our results show that A. femoralis
tadpoles can innately recognize some predators and probably need both visual and
chemical information to effectively avoid them. This is the first study looking
at anti-predator behavior in poison frog tadpoles. We discuss how parental care
might influence the expression of predator avoidance responses in tadpoles.'
acknowledgement: We are grateful to Véronique Helfer, Walter Hödl, Lisa Schretzmeyer
and Julia Wotke, who assisted with fieldwork in French Guiana. This work was supported
by the Austrian Science Fund (FWF) [P24788, T699 and P31518 to E.R.; P33728 to M.R.;
J3827 to Thomas Bugnyar, Tecumseh Fitch and Ludwig Huber]; and by the Austrian Bundesministerium
für Wissenschaft, Forschung und Wirtschaft [IS761001 to J.O. (Tecumseh Fitch, Thomas
Bugnyar and Ludwig Huber)]. A.P. was supported by the European Union's Horizon 2020
research and innovation programme under the Marie Sklodowska-Curie grant agreement
no. 835530. S.A.R. was supported by the HT faculty, Lund University. We thank the
CNRS Nouragues Ecological Research Station, which benefited from the ‘Investissement
d'Avenir’ grants managed by the Agence Nationale de la Recherche (AnaEE France ANR-11-INBS-0001;
Labex CEBA ANR-10-LABX-25-01). Open access funding provided by University of Vienna.
Deposited in PMC for immediate release.
article_number: jeb243647
article_processing_charge: No
article_type: original
author:
- first_name: B
full_name: Szabo, B
last_name: Szabo
- first_name: R
full_name: Mangione, R
last_name: Mangione
- first_name: M
full_name: Rath, M
last_name: Rath
- first_name: A
full_name: Pašukonis, A
last_name: Pašukonis
- first_name: SA
full_name: Reber, SA
last_name: Reber
- first_name: Jinook
full_name: Oh, Jinook
id: 403169A4-080F-11EA-9993-BF3F3DDC885E
last_name: Oh
orcid: 0000-0001-7425-2372
- first_name: M
full_name: Ringler, M
last_name: Ringler
- first_name: E
full_name: Ringler, E
last_name: Ringler
citation:
ama: Szabo B, Mangione R, Rath M, et al. Naïve poison frog tadpoles use bi-modal
cues to avoid insect predators but not heterospecific predatory tadpoles. Journal
of Experimental Biology. 2021;224(24). doi:10.1242/jeb.243647
apa: Szabo, B., Mangione, R., Rath, M., Pašukonis, A., Reber, S., Oh, J., … Ringler,
E. (2021). Naïve poison frog tadpoles use bi-modal cues to avoid insect predators
but not heterospecific predatory tadpoles. Journal of Experimental Biology.
The Company of Biologists. https://doi.org/10.1242/jeb.243647
chicago: Szabo, B, R Mangione, M Rath, A Pašukonis, SA Reber, Jinook Oh, M Ringler,
and E Ringler. “Naïve Poison Frog Tadpoles Use Bi-Modal Cues to Avoid Insect Predators
but Not Heterospecific Predatory Tadpoles.” Journal of Experimental Biology.
The Company of Biologists, 2021. https://doi.org/10.1242/jeb.243647.
ieee: B. Szabo et al., “Naïve poison frog tadpoles use bi-modal cues to avoid
insect predators but not heterospecific predatory tadpoles,” Journal of Experimental
Biology, vol. 224, no. 24. The Company of Biologists, 2021.
ista: Szabo B, Mangione R, Rath M, Pašukonis A, Reber S, Oh J, Ringler M, Ringler
E. 2021. Naïve poison frog tadpoles use bi-modal cues to avoid insect predators
but not heterospecific predatory tadpoles. Journal of Experimental Biology. 224(24),
jeb243647.
mla: Szabo, B., et al. “Naïve Poison Frog Tadpoles Use Bi-Modal Cues to Avoid Insect
Predators but Not Heterospecific Predatory Tadpoles.” Journal of Experimental
Biology, vol. 224, no. 24, jeb243647, The Company of Biologists, 2021, doi:10.1242/jeb.243647.
short: B. Szabo, R. Mangione, M. Rath, A. Pašukonis, S. Reber, J. Oh, M. Ringler,
E. Ringler, Journal of Experimental Biology 224 (2021).
date_created: 2021-12-20T07:54:22Z
date_published: 2021-12-16T00:00:00Z
date_updated: 2023-08-17T06:26:15Z
day: '16'
ddc:
- '573'
department:
- _id: SyCr
doi: 10.1242/jeb.243647
external_id:
isi:
- '000738259300013'
pmid:
- '34845497'
file:
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checksum: 75d13a5ec8e3b90e3bc02bd8a9c17eef
content_type: application/pdf
creator: cchlebak
date_created: 2021-12-20T10:14:14Z
date_updated: 2021-12-20T10:14:14Z
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file_name: 2021_JExpBio_Szabo.pdf
file_size: 607096
relation: main_file
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file_date_updated: 2021-12-20T10:14:14Z
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issue: '24'
language:
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month: '12'
oa: 1
oa_version: Published Version
pmid: 1
publication: Journal of Experimental Biology
publication_identifier:
eissn:
- 1477-9145
issn:
- 0022-0949
publication_status: published
publisher: The Company of Biologists
quality_controlled: '1'
status: public
title: Naïve poison frog tadpoles use bi-modal cues to avoid insect predators but
not heterospecific predatory tadpoles
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 224
year: '2021'
...
---
_id: '10575'
abstract:
- lang: eng
text: The choice of the boundary conditions in mechanical problems has to reflect
the interaction of the considered material with the surface. Still the assumption
of the no-slip condition is preferred in order to avoid boundary terms in the
analysis and slipping effects are usually overlooked. Besides the “static slip
models”, there are phenomena that are not accurately described by them, e.g. at
the moment when the slip changes rapidly, the wall shear stress and the slip can
exhibit a sudden overshoot and subsequent relaxation. When these effects become
significant, the so-called dynamic slip phenomenon occurs. We develop a mathematical
analysis of Navier–Stokes-like problems with a dynamic slip boundary condition,
which requires a proper generalization of the Gelfand triplet and the corresponding
function space setting.
acknowledgement: The research of A. Abbatiello is supported by Einstein Foundation,
Berlin. A. Abbatiello is also member of the Italian National Group for the Mathematical
Physics (GNFM) of INdAM. M. Bulíček acknowledges the support of the project No.
20-11027X financed by Czech Science Foundation (GACR). M. Bulíček is member of the
Jindřich Nečas Center for Mathematical Modelling. E. Maringová acknowledges support
from Charles University Research program UNCE/SCI/023, the grant SVV-2020-260583
by the Ministry of Education, Youth and Sports, Czech Republic and from the Austrian
Science Fund (FWF), grants P30000, W1245, and F65.
article_processing_charge: No
article_type: original
author:
- first_name: Anna
full_name: Abbatiello, Anna
last_name: Abbatiello
- first_name: Miroslav
full_name: Bulíček, Miroslav
last_name: Bulíček
- first_name: Erika
full_name: Maringová, Erika
id: dbabca31-66eb-11eb-963a-fb9c22c880b4
last_name: Maringová
citation:
ama: Abbatiello A, Bulíček M, Maringová E. On the dynamic slip boundary condition
for Navier-Stokes-like problems. Mathematical Models and Methods in Applied
Sciences. 2021;31(11):2165-2212. doi:10.1142/S0218202521500470
apa: Abbatiello, A., Bulíček, M., & Maringová, E. (2021). On the dynamic slip
boundary condition for Navier-Stokes-like problems. Mathematical Models and
Methods in Applied Sciences. World Scientific Publishing. https://doi.org/10.1142/S0218202521500470
chicago: Abbatiello, Anna, Miroslav Bulíček, and Erika Maringová. “On the Dynamic
Slip Boundary Condition for Navier-Stokes-like Problems.” Mathematical Models
and Methods in Applied Sciences. World Scientific Publishing, 2021. https://doi.org/10.1142/S0218202521500470.
ieee: A. Abbatiello, M. Bulíček, and E. Maringová, “On the dynamic slip boundary
condition for Navier-Stokes-like problems,” Mathematical Models and Methods
in Applied Sciences, vol. 31, no. 11. World Scientific Publishing, pp. 2165–2212,
2021.
ista: Abbatiello A, Bulíček M, Maringová E. 2021. On the dynamic slip boundary condition
for Navier-Stokes-like problems. Mathematical Models and Methods in Applied Sciences.
31(11), 2165–2212.
mla: Abbatiello, Anna, et al. “On the Dynamic Slip Boundary Condition for Navier-Stokes-like
Problems.” Mathematical Models and Methods in Applied Sciences, vol. 31,
no. 11, World Scientific Publishing, 2021, pp. 2165–212, doi:10.1142/S0218202521500470.
short: A. Abbatiello, M. Bulíček, E. Maringová, Mathematical Models and Methods
in Applied Sciences 31 (2021) 2165–2212.
date_created: 2021-12-26T23:01:27Z
date_published: 2021-10-13T00:00:00Z
date_updated: 2023-08-17T06:29:01Z
day: '13'
ddc:
- '510'
department:
- _id: JuFi
doi: 10.1142/S0218202521500470
external_id:
arxiv:
- '2009.09057'
isi:
- '000722309400001'
file:
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checksum: 8c0a9396335f0b70e1f5cbfe450a987a
content_type: application/pdf
creator: dernst
date_created: 2022-05-16T10:55:45Z
date_updated: 2022-05-16T10:55:45Z
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file_name: 2021_MathModelsMethods_Abbatiello.pdf
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month: '10'
oa: 1
oa_version: Published Version
page: 2165-2212
project:
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
grant_number: F6504
name: Taming Complexity in Partial Differential Systems
- _id: 260788DE-B435-11E9-9278-68D0E5697425
call_identifier: FWF
name: Dissipation and Dispersion in Nonlinear Partial Differential Equations
publication: Mathematical Models and Methods in Applied Sciences
publication_identifier:
eissn:
- 1793-6314
issn:
- 0218-2025
publication_status: published
publisher: World Scientific Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the dynamic slip boundary condition for Navier-Stokes-like problems
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 31
year: '2021'
...
---
_id: '10574'
abstract:
- lang: eng
text: 'The understanding of material appearance perception is a complex problem
due to interactions between material reflectance, surface geometry, and illumination.
Recently, Serrano et al. collected the largest dataset to date with subjective
ratings of material appearance attributes, including glossiness, metallicness,
sharpness and contrast of reflections. In this work, we make use of their dataset
to investigate for the first time the impact of the interactions between illumination,
geometry, and eight different material categories in perceived appearance attributes.
After an initial analysis, we select for further analysis the four material categories
that cover the largest range for all perceptual attributes: fabric, plastic, ceramic,
and metal. Using a cumulative link mixed model (CLMM) for robust regression, we
discover interactions between these material categories and four representative
illuminations and object geometries. We believe that our findings contribute to
expanding the knowledge on material appearance perception and can be useful for
many applications, such as scene design, where any particular material in a given
shape can be aligned with dominant classes of illumination, so that a desired
strength of appearance attributes can be achieved.'
acknowledgement: This project has received funding from the European Union’s Horizon
2020 research and innovation programme under the Marie Sklodowska-Curie, grant agreement
N∘ 765911 (RealVision) and from the European Research Council (ERC), grant agreement
N∘ 804226 (PERDY). Open Access funding enabled and organized by Projekt DEAL.
article_processing_charge: Yes
article_type: original
author:
- first_name: Bin
full_name: Chen, Bin
last_name: Chen
- first_name: Chao
full_name: Wang, Chao
last_name: Wang
- first_name: Michael
full_name: Piovarci, Michael
id: 62E473F4-5C99-11EA-A40E-AF823DDC885E
last_name: Piovarci
orcid: 0000-0002-5062-4474
- first_name: Hans Peter
full_name: Seidel, Hans Peter
last_name: Seidel
- first_name: Piotr
full_name: Didyk, Piotr
last_name: Didyk
- first_name: Karol
full_name: Myszkowski, Karol
last_name: Myszkowski
- first_name: Ana
full_name: Serrano, Ana
last_name: Serrano
citation:
ama: Chen B, Wang C, Piovarci M, et al. The effect of geometry and illumination
on appearance perception of different material categories. Visual Computer.
2021;37(12):2975-2987. doi:10.1007/s00371-021-02227-x
apa: Chen, B., Wang, C., Piovarci, M., Seidel, H. P., Didyk, P., Myszkowski, K.,
& Serrano, A. (2021). The effect of geometry and illumination on appearance
perception of different material categories. Visual Computer. Springer
Nature. https://doi.org/10.1007/s00371-021-02227-x
chicago: Chen, Bin, Chao Wang, Michael Piovarci, Hans Peter Seidel, Piotr Didyk,
Karol Myszkowski, and Ana Serrano. “The Effect of Geometry and Illumination on
Appearance Perception of Different Material Categories.” Visual Computer.
Springer Nature, 2021. https://doi.org/10.1007/s00371-021-02227-x.
ieee: B. Chen et al., “The effect of geometry and illumination on appearance
perception of different material categories,” Visual Computer, vol. 37,
no. 12. Springer Nature, pp. 2975–2987, 2021.
ista: Chen B, Wang C, Piovarci M, Seidel HP, Didyk P, Myszkowski K, Serrano A. 2021.
The effect of geometry and illumination on appearance perception of different
material categories. Visual Computer. 37(12), 2975–2987.
mla: Chen, Bin, et al. “The Effect of Geometry and Illumination on Appearance Perception
of Different Material Categories.” Visual Computer, vol. 37, no. 12, Springer
Nature, 2021, pp. 2975–87, doi:10.1007/s00371-021-02227-x.
short: B. Chen, C. Wang, M. Piovarci, H.P. Seidel, P. Didyk, K. Myszkowski, A. Serrano,
Visual Computer 37 (2021) 2975–2987.
date_created: 2021-12-26T23:01:26Z
date_published: 2021-12-01T00:00:00Z
date_updated: 2023-08-17T06:29:34Z
day: '01'
ddc:
- '000'
department:
- _id: BeBi
doi: 10.1007/s00371-021-02227-x
external_id:
isi:
- '000673536600003'
file:
- access_level: open_access
checksum: 244cfcac0479ca6e3444c098ab2860a1
content_type: application/pdf
creator: cchlebak
date_created: 2021-12-27T13:51:08Z
date_updated: 2021-12-27T13:51:08Z
file_id: '10578'
file_name: 2021_VisComput_Chen.pdf
file_size: 5741094
relation: main_file
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file_date_updated: 2021-12-27T13:51:08Z
has_accepted_license: '1'
intvolume: ' 37'
isi: 1
issue: '12'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
page: 2975-2987
publication: Visual Computer
publication_identifier:
eissn:
- 1432-2315
issn:
- 0178-2789
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: The effect of geometry and illumination on appearance perception of different
material categories
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 37
year: '2021'
...
---
_id: '10573'
abstract:
- lang: eng
text: How tissues acquire complex shapes is a fundamental question in biology and
regenerative medicine. Zebrafish semicircular canals form from invaginations in
the otic epithelium (buds) that extend and fuse to form the hubs of each canal.
We find that conventional actomyosin-driven behaviors are not required. Instead,
local secretion of hyaluronan, made by the enzymes uridine 5′-diphosphate dehydrogenase
(ugdh) and hyaluronan synthase 3 (has3), drives canal morphogenesis. Charged hyaluronate
polymers osmotically swell with water and generate isotropic extracellular pressure
to deform the overlying epithelium into buds. The mechanical anisotropy needed
to shape buds into tubes is conferred by a polarized distribution of actomyosin
and E-cadherin-rich membrane tethers, which we term cytocinches. Most work on
tissue morphogenesis ascribes actomyosin contractility as the driving force, while
the extracellular matrix shapes tissues through differential stiffness. Our work
inverts this expectation. Hyaluronate pressure shaped by anisotropic tissue stiffness
may be a widespread mechanism for powering morphological change in organogenesis
and tissue engineering.
acknowledgement: We thank Ian Swinburne, Sandy Nandagopal, and Toru Kawanishi for
support, discussions, and reagents. We thank Vanessa Barone, Joseph Nasser, and
members of the Megason lab for useful comments on the manuscript and general feedback.
We are grateful to the Heisenberg and Knaut labs for transgenic fish. Diagrams on
the right in the graphical abstract were created using BioRender. This work was
supported by NIH R01DC015478 and NIH R01GM107733 to S.G.M. A.M. was supported by
Human Frontiers Science Program LTF and NIH K99HD098918.
article_processing_charge: No
article_type: original
author:
- first_name: Akankshi
full_name: Munjal, Akankshi
last_name: Munjal
- first_name: Edouard B
full_name: Hannezo, Edouard B
id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
last_name: Hannezo
orcid: 0000-0001-6005-1561
- first_name: Tony Y.C.
full_name: Tsai, Tony Y.C.
last_name: Tsai
- first_name: Timothy J.
full_name: Mitchison, Timothy J.
last_name: Mitchison
- first_name: Sean G.
full_name: Megason, Sean G.
last_name: Megason
citation:
ama: Munjal A, Hannezo EB, Tsai TYC, Mitchison TJ, Megason SG. Extracellular hyaluronate
pressure shaped by cellular tethers drives tissue morphogenesis. Cell.
2021;184(26):6313-6325.e18. doi:10.1016/j.cell.2021.11.025
apa: Munjal, A., Hannezo, E. B., Tsai, T. Y. C., Mitchison, T. J., & Megason,
S. G. (2021). Extracellular hyaluronate pressure shaped by cellular tethers drives
tissue morphogenesis. Cell. Elsevier ; Cell Press. https://doi.org/10.1016/j.cell.2021.11.025
chicago: Munjal, Akankshi, Edouard B Hannezo, Tony Y.C. Tsai, Timothy J. Mitchison,
and Sean G. Megason. “Extracellular Hyaluronate Pressure Shaped by Cellular Tethers
Drives Tissue Morphogenesis.” Cell. Elsevier ; Cell Press, 2021. https://doi.org/10.1016/j.cell.2021.11.025.
ieee: A. Munjal, E. B. Hannezo, T. Y. C. Tsai, T. J. Mitchison, and S. G. Megason,
“Extracellular hyaluronate pressure shaped by cellular tethers drives tissue morphogenesis,”
Cell, vol. 184, no. 26. Elsevier ; Cell Press, p. 6313–6325.e18, 2021.
ista: Munjal A, Hannezo EB, Tsai TYC, Mitchison TJ, Megason SG. 2021. Extracellular
hyaluronate pressure shaped by cellular tethers drives tissue morphogenesis. Cell.
184(26), 6313–6325.e18.
mla: Munjal, Akankshi, et al. “Extracellular Hyaluronate Pressure Shaped by Cellular
Tethers Drives Tissue Morphogenesis.” Cell, vol. 184, no. 26, Elsevier ;
Cell Press, 2021, p. 6313–6325.e18, doi:10.1016/j.cell.2021.11.025.
short: A. Munjal, E.B. Hannezo, T.Y.C. Tsai, T.J. Mitchison, S.G. Megason, Cell
184 (2021) 6313–6325.e18.
date_created: 2021-12-26T23:01:26Z
date_published: 2021-12-22T00:00:00Z
date_updated: 2023-08-17T06:28:25Z
day: '22'
department:
- _id: EdHa
doi: 10.1016/j.cell.2021.11.025
external_id:
isi:
- '000735387500002'
intvolume: ' 184'
isi: 1
issue: '26'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.biorxiv.org/content/10.1101/2020.09.28.316042
month: '12'
oa: 1
oa_version: Preprint
page: 6313-6325.e18
publication: Cell
publication_identifier:
eissn:
- 1097-4172
issn:
- 0092-8674
publication_status: published
publisher: Elsevier ; Cell Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Extracellular hyaluronate pressure shaped by cellular tethers drives tissue
morphogenesis
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 184
year: '2021'
...
---
_id: '10674'
abstract:
- lang: eng
text: 'In two-player games on graphs, the players move a token through a graph to
produce an infinite path, which determines the winner of the game. Such games
are central in formal methods since they model the interaction between a non-terminating
system and its environment. In bidding games the players bid for the right to
move the token: in each round, the players simultaneously submit bids, and the
higher bidder moves the token and pays the other player. Bidding games are known
to have a clean and elegant mathematical structure that relies on the ability
of the players to submit arbitrarily small bids. Many applications, however, require
a fixed granularity for the bids, which can represent, for example, the monetary
value expressed in cents. We study, for the first time, the combination of discrete-bidding
and infinite-duration games. Our most important result proves that these games
form a large determined subclass of concurrent games, where determinacy is the
strong property that there always exists exactly one player who can guarantee
winning the game. In particular, we show that, in contrast to non-discrete bidding
games, the mechanism with which tied bids are resolved plays an important role
in discrete-bidding games. We study several natural tie-breaking mechanisms and
show that, while some do not admit determinacy, most natural mechanisms imply
determinacy for every pair of initial budgets.'
acknowledgement: "This research was supported in part by the Austrian Science Fund
(FWF) under grants S11402-N23 (RiSE/SHiNE), Z211-N23 (Wittgenstein Award), and M
2369-N33 (Meitner fellowship).\r\n"
article_processing_charge: No
article_type: original
author:
- first_name: Milad
full_name: Aghajohari, Milad
last_name: Aghajohari
- first_name: Guy
full_name: Avni, Guy
id: 463C8BC2-F248-11E8-B48F-1D18A9856A87
last_name: Avni
orcid: 0000-0001-5588-8287
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000-0002-2985-7724
citation:
ama: Aghajohari M, Avni G, Henzinger TA. Determinacy in discrete-bidding infinite-duration
games. Logical Methods in Computer Science. 2021;17(1):10:1-10:23. doi:10.23638/LMCS-17(1:10)2021
apa: Aghajohari, M., Avni, G., & Henzinger, T. A. (2021). Determinacy in discrete-bidding
infinite-duration games. Logical Methods in Computer Science. International
Federation for Computational Logic. https://doi.org/10.23638/LMCS-17(1:10)2021
chicago: Aghajohari, Milad, Guy Avni, and Thomas A Henzinger. “Determinacy in Discrete-Bidding
Infinite-Duration Games.” Logical Methods in Computer Science. International
Federation for Computational Logic, 2021. https://doi.org/10.23638/LMCS-17(1:10)2021.
ieee: M. Aghajohari, G. Avni, and T. A. Henzinger, “Determinacy in discrete-bidding
infinite-duration games,” Logical Methods in Computer Science, vol. 17,
no. 1. International Federation for Computational Logic, p. 10:1-10:23, 2021.
ista: Aghajohari M, Avni G, Henzinger TA. 2021. Determinacy in discrete-bidding
infinite-duration games. Logical Methods in Computer Science. 17(1), 10:1-10:23.
mla: Aghajohari, Milad, et al. “Determinacy in Discrete-Bidding Infinite-Duration
Games.” Logical Methods in Computer Science, vol. 17, no. 1, International
Federation for Computational Logic, 2021, p. 10:1-10:23, doi:10.23638/LMCS-17(1:10)2021.
short: M. Aghajohari, G. Avni, T.A. Henzinger, Logical Methods in Computer Science
17 (2021) 10:1-10:23.
date_created: 2022-01-25T16:32:13Z
date_published: 2021-02-03T00:00:00Z
date_updated: 2023-08-17T06:56:42Z
day: '03'
ddc:
- '510'
department:
- _id: ToHe
doi: 10.23638/LMCS-17(1:10)2021
external_id:
arxiv:
- '1905.03588'
isi:
- '000658724600010'
file:
- access_level: open_access
checksum: b35586a50ed1ca8f44767de116d18d81
content_type: application/pdf
creator: alisjak
date_created: 2022-01-26T08:04:50Z
date_updated: 2022-01-26T08:04:50Z
file_id: '10690'
file_name: 2021_LMCS_AGHAJOHAR.pdf
file_size: 819878
relation: main_file
success: 1
file_date_updated: 2022-01-26T08:04:50Z
has_accepted_license: '1'
intvolume: ' 17'
isi: 1
issue: '1'
keyword:
- computer science
- computer science and game theory
- logic in computer science
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 10:1-10:23
project:
- _id: 264B3912-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: M02369
name: Formal Methods meets Algorithmic Game Theory
- _id: 25F2ACDE-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11402-N23
name: Rigorous Systems Engineering
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z211
name: The Wittgenstein Prize
publication: Logical Methods in Computer Science
publication_identifier:
eissn:
- 1860-5974
publication_status: published
publisher: International Federation for Computational Logic
quality_controlled: '1'
scopus_import: '1'
status: public
title: Determinacy in discrete-bidding infinite-duration games
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 17
year: '2021'
...
---
_id: '10609'
abstract:
- lang: eng
text: "We study Multi-party computation (MPC) in the setting of subversion, where
the adversary tampers with the machines of honest parties. Our goal is to construct
actively secure MPC protocols where parties are corrupted adaptively by an adversary
(as in the standard adaptive security setting), and in addition, honest parties’
machines are compromised.\r\nThe idea of reverse firewalls (RF) was introduced
at EUROCRYPT’15 by Mironov and Stephens-Davidowitz as an approach to protecting
protocols against corruption of honest parties’ devices. Intuitively, an RF for
a party P is an external entity that sits between P and the outside world
and whose scope is to sanitize P ’s incoming and outgoing messages in the face
of subversion of their computer. Mironov and Stephens-Davidowitz constructed a
protocol for passively-secure two-party computation. At CRYPTO’20, Chakraborty,
Dziembowski and Nielsen constructed a protocol for secure computation with firewalls
that improved on this result, both by extending it to multi-party computation
protocol, and considering active security in the presence of static corruptions.
In this paper, we initiate the study of RF for MPC in the adaptive setting. We
put forward a definition for adaptively secure MPC in the reverse firewall setting,
explore relationships among the security notions, and then construct reverse firewalls
for MPC in this stronger setting of adaptive security. We also resolve the open
question of Chakraborty, Dziembowski and Nielsen by removing the need for a trusted
setup in constructing RF for MPC. Towards this end, we construct reverse firewalls
for adaptively secure augmented coin tossing and adaptively secure zero-knowledge
protocols and obtain a constant round adaptively secure MPC protocol in the reverse
firewall setting without setup. Along the way, we propose a new multi-party adaptively
secure coin tossing protocol in the plain model, that is of independent interest."
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Suvradip
full_name: Chakraborty, Suvradip
id: B9CD0494-D033-11E9-B219-A439E6697425
last_name: Chakraborty
- first_name: Chaya
full_name: Ganesh, Chaya
last_name: Ganesh
- first_name: Mahak
full_name: Pancholi, Mahak
last_name: Pancholi
- first_name: Pratik
full_name: Sarkar, Pratik
last_name: Sarkar
citation:
ama: 'Chakraborty S, Ganesh C, Pancholi M, Sarkar P. Reverse firewalls for adaptively
secure MPC without setup. In: 27th International Conference on the Theory and
Application of Cryptology and Information Security. Vol 13091. Springer Nature;
2021:335-364. doi:10.1007/978-3-030-92075-3_12'
apa: 'Chakraborty, S., Ganesh, C., Pancholi, M., & Sarkar, P. (2021). Reverse
firewalls for adaptively secure MPC without setup. In 27th International Conference
on the Theory and Application of Cryptology and Information Security (Vol.
13091, pp. 335–364). Virtual, Singapore: Springer Nature. https://doi.org/10.1007/978-3-030-92075-3_12'
chicago: Chakraborty, Suvradip, Chaya Ganesh, Mahak Pancholi, and Pratik Sarkar.
“Reverse Firewalls for Adaptively Secure MPC without Setup.” In 27th International
Conference on the Theory and Application of Cryptology and Information Security,
13091:335–64. Springer Nature, 2021. https://doi.org/10.1007/978-3-030-92075-3_12.
ieee: S. Chakraborty, C. Ganesh, M. Pancholi, and P. Sarkar, “Reverse firewalls
for adaptively secure MPC without setup,” in 27th International Conference
on the Theory and Application of Cryptology and Information Security, Virtual,
Singapore, 2021, vol. 13091, pp. 335–364.
ista: 'Chakraborty S, Ganesh C, Pancholi M, Sarkar P. 2021. Reverse firewalls for
adaptively secure MPC without setup. 27th International Conference on the Theory
and Application of Cryptology and Information Security. ASIACRYPT: International
Conference on Cryptology in Asia, LNCS, vol. 13091, 335–364.'
mla: Chakraborty, Suvradip, et al. “Reverse Firewalls for Adaptively Secure MPC
without Setup.” 27th International Conference on the Theory and Application
of Cryptology and Information Security, vol. 13091, Springer Nature, 2021,
pp. 335–64, doi:10.1007/978-3-030-92075-3_12.
short: S. Chakraborty, C. Ganesh, M. Pancholi, P. Sarkar, in:, 27th International
Conference on the Theory and Application of Cryptology and Information Security,
Springer Nature, 2021, pp. 335–364.
conference:
end_date: 2021-12-10
location: Virtual, Singapore
name: 'ASIACRYPT: International Conference on Cryptology in Asia'
start_date: 2021-12-06
date_created: 2022-01-09T23:01:27Z
date_published: 2021-12-01T00:00:00Z
date_updated: 2023-08-17T06:34:41Z
day: '01'
department:
- _id: KrPi
doi: 10.1007/978-3-030-92075-3_12
ec_funded: 1
external_id:
isi:
- '000927876200012'
intvolume: ' 13091'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://eprint.iacr.org/2021/1262
month: '12'
oa: 1
oa_version: Preprint
page: 335-364
project:
- _id: 258AA5B2-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '682815'
name: Teaching Old Crypto New Tricks
publication: 27th International Conference on the Theory and Application of Cryptology
and Information Security
publication_identifier:
eisbn:
- 978-3-030-92075-3
eissn:
- 1611-3349
isbn:
- 978-3-030-92074-6
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Reverse firewalls for adaptively secure MPC without setup
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 13091
year: '2021'
...
---
_id: '10606'
abstract:
- lang: eng
text: Cell division orientation is thought to result from a competition between
cell geometry and polarity domains controlling the position of the mitotic spindle
during mitosis. Depending on the level of cell shape anisotropy or the strength
of the polarity domain, one dominates the other and determines the orientation
of the spindle. Whether and how such competition is also at work to determine
unequal cell division (UCD), producing daughter cells of different size, remains
unclear. Here, we show that cell geometry and polarity domains cooperate, rather
than compete, in positioning the cleavage plane during UCDs in early ascidian
embryos. We found that the UCDs and their orientation at the ascidian third cleavage
rely on the spindle tilting in an anisotropic cell shape, and cortical polarity
domains exerting different effects on spindle astral microtubules. By systematically
varying mitotic cell shape, we could modulate the effect of attractive and repulsive
polarity domains and consequently generate predicted daughter cell size asymmetries
and position. We therefore propose that the spindle position during UCD is set
by the combined activities of cell geometry and polarity domains, where cell geometry
modulates the effect of cortical polarity domain(s).
acknowledged_ssus:
- _id: NanoFab
- _id: Bio
acknowledgement: 'We thank members of the Heisenberg and McDougall groups for technical
advice and discussion. We are grateful to the Bioimaging and Nanofabrication facilities
of IST Austria and the Imaging Platform (PIM) and animal facility (CRB) of Institut
de la Mer de Villefranche (IMEV), which is supported by EMBRC-France, whose French
state funds are managed by the ANR within the Investments of the Future program
under reference ANR-10-INBS-0, for continuous support. This work was supported by
a collaborative grant from the French Government funding agency Agence National
de la Recherche to McDougall (ANR ''MorCell'': ANR-17-CE 13-0028) and the Austrian
Science Fund to Heisenberg (FWF: I 3601-B27).'
article_number: e75639
article_processing_charge: No
article_type: original
author:
- first_name: Benoit G
full_name: Godard, Benoit G
id: 33280250-F248-11E8-B48F-1D18A9856A87
last_name: Godard
- first_name: Remi
full_name: Dumollard, Remi
last_name: Dumollard
- first_name: Carl-Philipp J
full_name: Heisenberg, Carl-Philipp J
id: 39427864-F248-11E8-B48F-1D18A9856A87
last_name: Heisenberg
orcid: 0000-0002-0912-4566
- first_name: Alex
full_name: Mcdougall, Alex
last_name: Mcdougall
citation:
ama: Godard BG, Dumollard R, Heisenberg C-PJ, Mcdougall A. Combined effect of cell
geometry and polarity domains determines the orientation of unequal division.
eLife. 2021;10. doi:10.7554/eLife.75639
apa: Godard, B. G., Dumollard, R., Heisenberg, C.-P. J., & Mcdougall, A. (2021).
Combined effect of cell geometry and polarity domains determines the orientation
of unequal division. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.75639
chicago: Godard, Benoit G, Remi Dumollard, Carl-Philipp J Heisenberg, and Alex Mcdougall.
“Combined Effect of Cell Geometry and Polarity Domains Determines the Orientation
of Unequal Division.” ELife. eLife Sciences Publications, 2021. https://doi.org/10.7554/eLife.75639.
ieee: B. G. Godard, R. Dumollard, C.-P. J. Heisenberg, and A. Mcdougall, “Combined
effect of cell geometry and polarity domains determines the orientation of unequal
division,” eLife, vol. 10. eLife Sciences Publications, 2021.
ista: Godard BG, Dumollard R, Heisenberg C-PJ, Mcdougall A. 2021. Combined effect
of cell geometry and polarity domains determines the orientation of unequal division.
eLife. 10, e75639.
mla: Godard, Benoit G., et al. “Combined Effect of Cell Geometry and Polarity Domains
Determines the Orientation of Unequal Division.” ELife, vol. 10, e75639,
eLife Sciences Publications, 2021, doi:10.7554/eLife.75639.
short: B.G. Godard, R. Dumollard, C.-P.J. Heisenberg, A. Mcdougall, ELife 10 (2021).
date_created: 2022-01-09T23:01:26Z
date_published: 2021-12-21T00:00:00Z
date_updated: 2023-08-17T06:32:44Z
day: '21'
ddc:
- '570'
department:
- _id: CaHe
doi: 10.7554/eLife.75639
external_id:
isi:
- '000733610100001'
file:
- access_level: open_access
checksum: 759c7a873d554c48a6639e6350746ca6
content_type: application/pdf
creator: alisjak
date_created: 2022-01-10T09:40:37Z
date_updated: 2022-01-10T09:40:37Z
file_id: '10611'
file_name: 2021_eLife_Godard.pdf
file_size: 7769934
relation: main_file
success: 1
file_date_updated: 2022-01-10T09:40:37Z
has_accepted_license: '1'
intvolume: ' 10'
isi: 1
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: 2646861A-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I03601
name: Control of embryonic cleavage pattern
publication: eLife
publication_identifier:
eissn:
- 2050-084X
publication_status: published
publisher: eLife Sciences Publications
quality_controlled: '1'
scopus_import: '1'
status: public
title: Combined effect of cell geometry and polarity domains determines the orientation
of unequal division
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 10
year: '2021'
...
---
_id: '10607'
abstract:
- lang: eng
text: The evidence linking innate immunity mechanisms and neurodegenerative diseases
is growing, but the specific mechanisms are incompletely understood. Experimental
data suggest that microglial TLR4 mediates the uptake and clearance of α-synuclein
also termed synucleinophagy. The accumulation of misfolded α-synuclein throughout
the brain is central to Parkinson's disease (PD). The distribution and progression
of the pathology is often attributed to the propagation of α-synuclein. Here,
we apply a classical α-synuclein propagation model of prodromal PD in wild type
and TLR4 deficient mice to study the role of TLR4 in the progression of the disease.
Our data suggest that TLR4 deficiency facilitates the α-synuclein seed spreading
associated with reduced lysosomal activity of microglia. Three months after seed
inoculation, more pronounced proteinase K-resistant α-synuclein inclusion pathology
is observed in mice with TLR4 deficiency. The facilitated propagation of α-synuclein
is associated with early loss of dopamine transporter (DAT) signal in the striatum
and loss of dopaminergic neurons in substantia nigra pars compacta of TLR4 deficient
mice. These new results support TLR4 signaling as a putative target for disease
modification to slow the progression of PD and related disorders.
acknowledgement: This study was supported by grants of the Austrian Science Fund (FWF)
F4414 and W1206-08. Electron microscopy was performed at the Scientific Service
Units (SSU) of IST-Austria through resources provided by the Electron Microscopy
Facility.
article_processing_charge: No
article_type: original
author:
- first_name: Serena
full_name: Venezia, Serena
last_name: Venezia
- first_name: Walter
full_name: Kaufmann, Walter
id: 3F99E422-F248-11E8-B48F-1D18A9856A87
last_name: Kaufmann
orcid: 0000-0001-9735-5315
- first_name: Gregor K.
full_name: Wenning, Gregor K.
last_name: Wenning
- first_name: Nadia
full_name: Stefanova, Nadia
last_name: Stefanova
citation:
ama: Venezia S, Kaufmann W, Wenning GK, Stefanova N. Toll-like receptor 4 deficiency
facilitates α-synuclein propagation and neurodegeneration in a mouse model of
prodromal Parkinson’s disease. Parkinsonism & Related Disorders. 2021;91:59-65.
doi:10.1016/j.parkreldis.2021.09.007
apa: Venezia, S., Kaufmann, W., Wenning, G. K., & Stefanova, N. (2021). Toll-like
receptor 4 deficiency facilitates α-synuclein propagation and neurodegeneration
in a mouse model of prodromal Parkinson’s disease. Parkinsonism & Related
Disorders. Elsevier. https://doi.org/10.1016/j.parkreldis.2021.09.007
chicago: Venezia, Serena, Walter Kaufmann, Gregor K. Wenning, and Nadia Stefanova.
“Toll-like Receptor 4 Deficiency Facilitates α-Synuclein Propagation and Neurodegeneration
in a Mouse Model of Prodromal Parkinson’s Disease.” Parkinsonism & Related
Disorders. Elsevier, 2021. https://doi.org/10.1016/j.parkreldis.2021.09.007.
ieee: S. Venezia, W. Kaufmann, G. K. Wenning, and N. Stefanova, “Toll-like receptor
4 deficiency facilitates α-synuclein propagation and neurodegeneration in a mouse
model of prodromal Parkinson’s disease,” Parkinsonism & Related Disorders,
vol. 91. Elsevier, pp. 59–65, 2021.
ista: Venezia S, Kaufmann W, Wenning GK, Stefanova N. 2021. Toll-like receptor 4
deficiency facilitates α-synuclein propagation and neurodegeneration in a mouse
model of prodromal Parkinson’s disease. Parkinsonism & Related Disorders.
91, 59–65.
mla: Venezia, Serena, et al. “Toll-like Receptor 4 Deficiency Facilitates α-Synuclein
Propagation and Neurodegeneration in a Mouse Model of Prodromal Parkinson’s Disease.”
Parkinsonism & Related Disorders, vol. 91, Elsevier, 2021, pp. 59–65,
doi:10.1016/j.parkreldis.2021.09.007.
short: S. Venezia, W. Kaufmann, G.K. Wenning, N. Stefanova, Parkinsonism & Related
Disorders 91 (2021) 59–65.
date_created: 2022-01-09T23:01:26Z
date_published: 2021-10-01T00:00:00Z
date_updated: 2023-08-17T06:36:01Z
day: '01'
ddc:
- '610'
department:
- _id: EM-Fac
doi: 10.1016/j.parkreldis.2021.09.007
external_id:
isi:
- '000701142900012'
pmid:
- '34530328'
file:
- access_level: open_access
checksum: 360681585acb51e80d17c6b213c56b55
content_type: application/pdf
creator: alisjak
date_created: 2022-01-10T13:41:40Z
date_updated: 2022-01-10T13:41:40Z
file_id: '10612'
file_name: 2021_Parkinsonism_Venezia.pdf
file_size: 6848513
relation: main_file
success: 1
file_date_updated: 2022-01-10T13:41:40Z
has_accepted_license: '1'
intvolume: ' 91'
isi: 1
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: 59-65
pmid: 1
publication: Parkinsonism & Related Disorders
publication_identifier:
eissn:
- 1873-5126
issn:
- 1353-8020
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Toll-like receptor 4 deficiency facilitates α-synuclein propagation and neurodegeneration
in a mouse model of prodromal Parkinson's disease
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 91
year: '2021'
...
---
_id: '10628'
abstract:
- lang: eng
text: The surface states of 3D topological insulators in general have negligible
quantum oscillations (QOs) when the chemical potential is tuned to the Dirac points.
In contrast, we find that topological Kondo insulators (TKIs) can support surface
states with an arbitrarily large Fermi surface (FS) when the chemical potential
is pinned to the Dirac point. We illustrate that these FSs give rise to finite-frequency
QOs, which can become comparable to the extremal area of the unhybridized bulk
bands. We show that this occurs when the crystal symmetry is lowered from cubic
to tetragonal in a minimal two-orbital model. We label such surface modes as 'shadow
surface states'. Moreover, we show that the sufficient next-nearest neighbor out-of-plane
hybridization leading to shadow surface states can be self-consistently stabilized
for tetragonal TKIs. Consequently, shadow surface states provide an important
example of high-frequency QOs beyond the context of cubic TKIs.
acknowledgement: PG acknowledges support from National Science Foundation Awards No.
DMR-1824265 for this work. AG acknowledges support from the European Union's Horizon
2020 research and innovation program under the Marie Skłodowska-Curie Grant Agreement
No. 754411. EMN is supported by ASU startup grant. OE is in part supported by NSF-DMR-1904716.
article_number: '123042'
article_processing_charge: No
article_type: original
author:
- first_name: Areg
full_name: Ghazaryan, Areg
id: 4AF46FD6-F248-11E8-B48F-1D18A9856A87
last_name: Ghazaryan
orcid: 0000-0001-9666-3543
- first_name: Emilian M.
full_name: Nica, Emilian M.
last_name: Nica
- first_name: Onur
full_name: Erten, Onur
last_name: Erten
- first_name: Pouyan
full_name: Ghaemi, Pouyan
last_name: Ghaemi
citation:
ama: Ghazaryan A, Nica EM, Erten O, Ghaemi P. Shadow surface states in topological
Kondo insulators. New Journal of Physics. 2021;23(12). doi:10.1088/1367-2630/ac4124
apa: Ghazaryan, A., Nica, E. M., Erten, O., & Ghaemi, P. (2021). Shadow surface
states in topological Kondo insulators. New Journal of Physics. IOP Publishing.
https://doi.org/10.1088/1367-2630/ac4124
chicago: Ghazaryan, Areg, Emilian M. Nica, Onur Erten, and Pouyan Ghaemi. “Shadow
Surface States in Topological Kondo Insulators.” New Journal of Physics.
IOP Publishing, 2021. https://doi.org/10.1088/1367-2630/ac4124.
ieee: A. Ghazaryan, E. M. Nica, O. Erten, and P. Ghaemi, “Shadow surface states
in topological Kondo insulators,” New Journal of Physics, vol. 23, no.
12. IOP Publishing, 2021.
ista: Ghazaryan A, Nica EM, Erten O, Ghaemi P. 2021. Shadow surface states in topological
Kondo insulators. New Journal of Physics. 23(12), 123042.
mla: Ghazaryan, Areg, et al. “Shadow Surface States in Topological Kondo Insulators.”
New Journal of Physics, vol. 23, no. 12, 123042, IOP Publishing, 2021,
doi:10.1088/1367-2630/ac4124.
short: A. Ghazaryan, E.M. Nica, O. Erten, P. Ghaemi, New Journal of Physics 23 (2021).
date_created: 2022-01-16T23:01:28Z
date_published: 2021-12-23T00:00:00Z
date_updated: 2023-08-17T06:54:54Z
day: '23'
ddc:
- '530'
department:
- _id: MiLe
doi: 10.1088/1367-2630/ac4124
ec_funded: 1
external_id:
arxiv:
- '2012.11625'
isi:
- '000734063700001'
file:
- access_level: open_access
checksum: 0c3cb6816242fa8afd1cc87a5fe77821
content_type: application/pdf
creator: cchlebak
date_created: 2022-01-17T10:01:58Z
date_updated: 2022-01-17T10:01:58Z
file_id: '10632'
file_name: 2021_NewJourPhys_Ghazaryan.pdf
file_size: 2533102
relation: main_file
success: 1
file_date_updated: 2022-01-17T10:01:58Z
has_accepted_license: '1'
intvolume: ' 23'
isi: 1
issue: '12'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: New Journal of Physics
publication_identifier:
issn:
- 1367-2630
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: Shadow surface states in topological Kondo insulators
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 23
year: '2021'
...
---
_id: '10631'
abstract:
- lang: eng
text: We combine experimental and theoretical approaches to explore excited rotational
states of molecules embedded in helium nanodroplets using CS2 and I2 as examples.
Laser-induced nonadiabatic molecular alignment is employed to measure spectral
lines for rotational states extending beyond those initially populated at the
0.37 K droplet temperature. We construct a simple quantum-mechanical model, based
on a linear rotor coupled to a single-mode bosonic bath, to determine the rotational
energy structure in its entirety. The calculated and measured spectral lines are
in good agreement. We show that the effect of the surrounding superfluid on molecular
rotation can be rationalized by a single quantity, the angular momentum, transferred
from the molecule to the droplet.
acknowledgement: I.C. acknowledges the support by the European Union’s Horizon 2020
research and innovation programme under the Marie Sklodowska-Curie Grant Agreement
No. 665385. G.B. acknowledges support from the Austrian Science Fund (FWF), under
project No. M2461-N27. M.L. acknowledges support by the Austrian Science Fund (FWF),
under project No. P29902-N27, and by the European Research Council (ERC) Starting
Grant No. 801770 (ANGULON). H.S acknowledges support from the European Research
Council-AdG (Project No. 320459, DropletControl) and from The Villum Foundation
through a Villum Investigator grant no. 25886.
article_number: L061303
article_processing_charge: No
article_type: original
author:
- first_name: Igor
full_name: Cherepanov, Igor
id: 339C7E5A-F248-11E8-B48F-1D18A9856A87
last_name: Cherepanov
- first_name: Giacomo
full_name: Bighin, Giacomo
id: 4CA96FD4-F248-11E8-B48F-1D18A9856A87
last_name: Bighin
orcid: 0000-0001-8823-9777
- first_name: Constant A.
full_name: Schouder, Constant A.
last_name: Schouder
- first_name: Adam S.
full_name: Chatterley, Adam S.
last_name: Chatterley
- first_name: Simon H.
full_name: Albrechtsen, Simon H.
last_name: Albrechtsen
- first_name: Alberto Viñas
full_name: Muñoz, Alberto Viñas
last_name: Muñoz
- first_name: Lars
full_name: Christiansen, Lars
last_name: Christiansen
- first_name: Henrik
full_name: Stapelfeldt, Henrik
last_name: Stapelfeldt
- first_name: Mikhail
full_name: Lemeshko, Mikhail
id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
last_name: Lemeshko
orcid: 0000-0002-6990-7802
citation:
ama: Cherepanov I, Bighin G, Schouder CA, et al. Excited rotational states of molecules
in a superfluid. Physical Review A. 2021;104(6). doi:10.1103/PhysRevA.104.L061303
apa: Cherepanov, I., Bighin, G., Schouder, C. A., Chatterley, A. S., Albrechtsen,
S. H., Muñoz, A. V., … Lemeshko, M. (2021). Excited rotational states of molecules
in a superfluid. Physical Review A. American Physical Society. https://doi.org/10.1103/PhysRevA.104.L061303
chicago: Cherepanov, Igor, Giacomo Bighin, Constant A. Schouder, Adam S. Chatterley,
Simon H. Albrechtsen, Alberto Viñas Muñoz, Lars Christiansen, Henrik Stapelfeldt,
and Mikhail Lemeshko. “Excited Rotational States of Molecules in a Superfluid.”
Physical Review A. American Physical Society, 2021. https://doi.org/10.1103/PhysRevA.104.L061303.
ieee: I. Cherepanov et al., “Excited rotational states of molecules in a
superfluid,” Physical Review A, vol. 104, no. 6. American Physical Society,
2021.
ista: Cherepanov I, Bighin G, Schouder CA, Chatterley AS, Albrechtsen SH, Muñoz
AV, Christiansen L, Stapelfeldt H, Lemeshko M. 2021. Excited rotational states
of molecules in a superfluid. Physical Review A. 104(6), L061303.
mla: Cherepanov, Igor, et al. “Excited Rotational States of Molecules in a Superfluid.”
Physical Review A, vol. 104, no. 6, L061303, American Physical Society,
2021, doi:10.1103/PhysRevA.104.L061303.
short: I. Cherepanov, G. Bighin, C.A. Schouder, A.S. Chatterley, S.H. Albrechtsen,
A.V. Muñoz, L. Christiansen, H. Stapelfeldt, M. Lemeshko, Physical Review A 104
(2021).
date_created: 2022-01-16T23:01:29Z
date_published: 2021-12-30T00:00:00Z
date_updated: 2023-08-17T06:52:17Z
day: '30'
department:
- _id: MiLe
doi: 10.1103/PhysRevA.104.L061303
ec_funded: 1
external_id:
arxiv:
- '2107.00468'
isi:
- '000739618300001'
intvolume: ' 104'
isi: 1
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://128.84.4.18/abs/2107.00468
month: '12'
oa: 1
oa_version: Preprint
project:
- _id: 26031614-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P29902
name: Quantum rotations in the presence of a many-body environment
- _id: 2688CF98-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '801770'
name: 'Angulon: physics and applications of a new quasiparticle'
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '665385'
name: International IST Doctoral Program
- _id: 26986C82-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: M02641
name: A path-integral approach to composite impurities
publication: Physical Review A
publication_identifier:
eissn:
- 2469-9934
issn:
- 2469-9926
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Excited rotational states of molecules in a superfluid
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 104
year: '2021'
...
---
_id: '10597'
abstract:
- lang: eng
text: We thank Emmanuel Abbe and Min Ye for providing us the implementation of RPA
decoding. D. Fathollahi and M. Mondelli are partially supported by the 2019 Lopez-Loreta
Prize. N. Farsad is supported by Discovery Grant from the Natural Sciences and
Engineering Research Council of Canada (NSERC) and Canada Foundation for Innovation
(CFI), John R. Evans Leader Fund. S. A. Hashemi is supported by a Postdoctoral
Fellowship from NSERC.
article_processing_charge: No
author:
- first_name: Dorsa
full_name: Fathollahi, Dorsa
last_name: Fathollahi
- first_name: Nariman
full_name: Farsad, Nariman
last_name: Farsad
- first_name: Seyyed Ali
full_name: Hashemi, Seyyed Ali
last_name: Hashemi
- first_name: Marco
full_name: Mondelli, Marco
id: 27EB676C-8706-11E9-9510-7717E6697425
last_name: Mondelli
orcid: 0000-0002-3242-7020
citation:
ama: 'Fathollahi D, Farsad N, Hashemi SA, Mondelli M. Sparse multi-decoder recursive
projection aggregation for Reed-Muller codes. In: 2021 IEEE International Symposium
on Information Theory. Institute of Electrical and Electronics Engineers;
2021:1082-1087. doi:10.1109/isit45174.2021.9517887'
apa: 'Fathollahi, D., Farsad, N., Hashemi, S. A., & Mondelli, M. (2021). Sparse
multi-decoder recursive projection aggregation for Reed-Muller codes. In 2021
IEEE International Symposium on Information Theory (pp. 1082–1087). Virtual,
Melbourne, Australia: Institute of Electrical and Electronics Engineers. https://doi.org/10.1109/isit45174.2021.9517887'
chicago: Fathollahi, Dorsa, Nariman Farsad, Seyyed Ali Hashemi, and Marco Mondelli.
“Sparse Multi-Decoder Recursive Projection Aggregation for Reed-Muller Codes.”
In 2021 IEEE International Symposium on Information Theory, 1082–87. Institute
of Electrical and Electronics Engineers, 2021. https://doi.org/10.1109/isit45174.2021.9517887.
ieee: D. Fathollahi, N. Farsad, S. A. Hashemi, and M. Mondelli, “Sparse multi-decoder
recursive projection aggregation for Reed-Muller codes,” in 2021 IEEE International
Symposium on Information Theory, Virtual, Melbourne, Australia, 2021, pp.
1082–1087.
ista: 'Fathollahi D, Farsad N, Hashemi SA, Mondelli M. 2021. Sparse multi-decoder
recursive projection aggregation for Reed-Muller codes. 2021 IEEE International
Symposium on Information Theory. ISIT: International Symposium on Information
Theory, 1082–1087.'
mla: Fathollahi, Dorsa, et al. “Sparse Multi-Decoder Recursive Projection Aggregation
for Reed-Muller Codes.” 2021 IEEE International Symposium on Information Theory,
Institute of Electrical and Electronics Engineers, 2021, pp. 1082–87, doi:10.1109/isit45174.2021.9517887.
short: D. Fathollahi, N. Farsad, S.A. Hashemi, M. Mondelli, in:, 2021 IEEE International
Symposium on Information Theory, Institute of Electrical and Electronics Engineers,
2021, pp. 1082–1087.
conference:
end_date: 2021-07-20
location: Virtual, Melbourne, Australia
name: 'ISIT: International Symposium on Information Theory'
start_date: 2021-07-12
date_created: 2022-01-03T11:31:26Z
date_published: 2021-09-01T00:00:00Z
date_updated: 2023-08-17T06:32:06Z
day: '01'
department:
- _id: MaMo
doi: 10.1109/isit45174.2021.9517887
external_id:
arxiv:
- '2011.12882'
isi:
- '000701502201029'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2011.12882
month: '09'
oa: 1
oa_version: Preprint
page: 1082-1087
project:
- _id: 059876FA-7A3F-11EA-A408-12923DDC885E
name: Prix Lopez-Loretta 2019 - Marco Mondelli
publication: 2021 IEEE International Symposium on Information Theory
publication_identifier:
eisbn:
- 978-1-5386-8209-8
isbn:
- 978-1-5386-8210-4
publication_status: published
publisher: Institute of Electrical and Electronics Engineers
quality_controlled: '1'
scopus_import: '1'
status: public
title: Sparse multi-decoder recursive projection aggregation for Reed-Muller codes
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
year: '2021'
...
---
_id: '10666'
abstract:
- lang: eng
text: Adversarial training is an effective method to train deep learning models
that are resilient to norm-bounded perturbations, with the cost of nominal performance
drop. While adversarial training appears to enhance the robustness and safety
of a deep model deployed in open-world decision-critical applications, counterintuitively,
it induces undesired behaviors in robot learning settings. In this paper, we show
theoretically and experimentally that neural controllers obtained via adversarial
training are subjected to three types of defects, namely transient, systematic,
and conditional errors. We first generalize adversarial training to a safety-domain
optimization scheme allowing for more generic specifications. We then prove that
such a learning process tends to cause certain error profiles. We support our
theoretical results by a thorough experimental safety analysis in a robot-learning
task. Our results suggest that adversarial training is not yet ready for robot
learning.
acknowledgement: M.L. and T.A.H. are supported in part by the Austrian Science Fund
(FWF) under grant Z211-N23 (Wittgenstein Award). R.H. and D.R. are supported by
Boeing and R.G. by Horizon-2020 ECSEL Project grant no. 783163 (iDev40).
article_processing_charge: No
author:
- first_name: Mathias
full_name: Lechner, Mathias
id: 3DC22916-F248-11E8-B48F-1D18A9856A87
last_name: Lechner
- first_name: Ramin
full_name: Hasani, Ramin
last_name: Hasani
- first_name: Radu
full_name: Grosu, Radu
last_name: Grosu
- first_name: Daniela
full_name: Rus, Daniela
last_name: Rus
- first_name: Thomas A
full_name: Henzinger, Thomas A
id: 40876CD8-F248-11E8-B48F-1D18A9856A87
last_name: Henzinger
orcid: 0000-0002-2985-7724
citation:
ama: 'Lechner M, Hasani R, Grosu R, Rus D, Henzinger TA. Adversarial training is
not ready for robot learning. In: 2021 IEEE International Conference on Robotics
and Automation. ICRA. ; 2021:4140-4147. doi:10.1109/ICRA48506.2021.9561036'
apa: Lechner, M., Hasani, R., Grosu, R., Rus, D., & Henzinger, T. A. (2021).
Adversarial training is not ready for robot learning. In 2021 IEEE International
Conference on Robotics and Automation (pp. 4140–4147). Xi’an, China. https://doi.org/10.1109/ICRA48506.2021.9561036
chicago: Lechner, Mathias, Ramin Hasani, Radu Grosu, Daniela Rus, and Thomas A Henzinger.
“Adversarial Training Is Not Ready for Robot Learning.” In 2021 IEEE International
Conference on Robotics and Automation, 4140–47. ICRA, 2021. https://doi.org/10.1109/ICRA48506.2021.9561036.
ieee: M. Lechner, R. Hasani, R. Grosu, D. Rus, and T. A. Henzinger, “Adversarial
training is not ready for robot learning,” in 2021 IEEE International Conference
on Robotics and Automation, Xi’an, China, 2021, pp. 4140–4147.
ista: 'Lechner M, Hasani R, Grosu R, Rus D, Henzinger TA. 2021. Adversarial training
is not ready for robot learning. 2021 IEEE International Conference on Robotics
and Automation. ICRA: International Conference on Robotics and AutomationICRA,
4140–4147.'
mla: Lechner, Mathias, et al. “Adversarial Training Is Not Ready for Robot Learning.”
2021 IEEE International Conference on Robotics and Automation, 2021, pp.
4140–47, doi:10.1109/ICRA48506.2021.9561036.
short: M. Lechner, R. Hasani, R. Grosu, D. Rus, T.A. Henzinger, in:, 2021 IEEE International
Conference on Robotics and Automation, 2021, pp. 4140–4147.
conference:
end_date: 2021-06-05
location: Xi'an, China
name: 'ICRA: International Conference on Robotics and Automation'
start_date: 2021-05-30
date_created: 2022-01-25T15:44:54Z
date_published: 2021-01-01T00:00:00Z
date_updated: 2023-08-17T06:58:38Z
ddc:
- '000'
department:
- _id: GradSch
- _id: ToHe
doi: 10.1109/ICRA48506.2021.9561036
external_id:
arxiv:
- '2103.08187'
isi:
- '000765738803040'
has_accepted_license: '1'
isi: 1
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-nd/3.0/
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2103.08187
oa: 1
oa_version: None
page: 4140-4147
project:
- _id: 25F42A32-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z211
name: The Wittgenstein Prize
publication: 2021 IEEE International Conference on Robotics and Automation
publication_identifier:
eisbn:
- 978-1-7281-9077-8
eissn:
- 2577-087X
isbn:
- 978-1-7281-9078-5
issn:
- 1050-4729
publication_status: published
quality_controlled: '1'
related_material:
record:
- id: '11362'
relation: dissertation_contains
status: public
series_title: ICRA
status: public
title: Adversarial training is not ready for robot learning
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/3.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported (CC BY-NC-ND
3.0)
short: CC BY-NC-ND (3.0)
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
year: '2021'
...
---
_id: '10711'
abstract:
- lang: eng
text: In this paper, we investigate the distribution of the maximum of partial sums
of families of m -periodic complex-valued functions satisfying certain conditions.
We obtain precise uniform estimates for the distribution function of this maximum
in a near-optimal range. Our results apply to partial sums of Kloosterman sums
and other families of ℓ -adic trace functions, and are as strong as those obtained
by Bober, Goldmakher, Granville and Koukoulopoulos for character sums. In particular,
we improve on the recent work of the third author for Birch sums. However, unlike
character sums, we are able to construct families of m -periodic complex-valued
functions which satisfy our conditions, but for which the Pólya–Vinogradov inequality
is sharp.
acknowledgement: We would like to thank the anonymous referees for carefully reading
the paper and for their remarks and suggestions.
article_processing_charge: No
article_type: original
author:
- first_name: Pascal
full_name: Autissier, Pascal
last_name: Autissier
- first_name: Dante
full_name: Bonolis, Dante
id: 6A459894-5FDD-11E9-AF35-BB24E6697425
last_name: Bonolis
- first_name: Youness
full_name: Lamzouri, Youness
last_name: Lamzouri
citation:
ama: Autissier P, Bonolis D, Lamzouri Y. The distribution of the maximum of partial
sums of Kloosterman sums and other trace functions. Compositio Mathematica.
2021;157(7):1610-1651. doi:10.1112/s0010437x21007351
apa: Autissier, P., Bonolis, D., & Lamzouri, Y. (2021). The distribution of
the maximum of partial sums of Kloosterman sums and other trace functions. Compositio
Mathematica. Cambridge University Press. https://doi.org/10.1112/s0010437x21007351
chicago: Autissier, Pascal, Dante Bonolis, and Youness Lamzouri. “The Distribution
of the Maximum of Partial Sums of Kloosterman Sums and Other Trace Functions.”
Compositio Mathematica. Cambridge University Press, 2021. https://doi.org/10.1112/s0010437x21007351.
ieee: P. Autissier, D. Bonolis, and Y. Lamzouri, “The distribution of the maximum
of partial sums of Kloosterman sums and other trace functions,” Compositio
Mathematica, vol. 157, no. 7. Cambridge University Press, pp. 1610–1651, 2021.
ista: Autissier P, Bonolis D, Lamzouri Y. 2021. The distribution of the maximum
of partial sums of Kloosterman sums and other trace functions. Compositio Mathematica.
157(7), 1610–1651.
mla: Autissier, Pascal, et al. “The Distribution of the Maximum of Partial Sums
of Kloosterman Sums and Other Trace Functions.” Compositio Mathematica,
vol. 157, no. 7, Cambridge University Press, 2021, pp. 1610–51, doi:10.1112/s0010437x21007351.
short: P. Autissier, D. Bonolis, Y. Lamzouri, Compositio Mathematica 157 (2021)
1610–1651.
date_created: 2022-02-01T08:10:43Z
date_published: 2021-06-28T00:00:00Z
date_updated: 2023-08-17T06:59:16Z
day: '28'
department:
- _id: TiBr
doi: 10.1112/s0010437x21007351
external_id:
arxiv:
- '1909.03266'
isi:
- '000667289300001'
intvolume: ' 157'
isi: 1
issue: '7'
keyword:
- Algebra and Number Theory
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1909.03266
month: '06'
oa: 1
oa_version: Preprint
page: 1610-1651
publication: Compositio Mathematica
publication_identifier:
eissn:
- 1570-5846
issn:
- 0010-437X
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
status: public
title: The distribution of the maximum of partial sums of Kloosterman sums and other
trace functions
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 157
year: '2021'
...
---
_id: '10809'
abstract:
- lang: eng
text: Thermoelectric materials are engines that convert heat into an electrical
current. Intuitively, the efficiency of this process depends on how many electrons
(charge carriers) can move and how easily they do so, how much energy those moving
electrons transport, and how easily the temperature gradient is maintained. In
terms of material properties, an excellent thermoelectric material requires a
high electrical conductivity σ, a high Seebeck coefficient S (a measure of the
induced thermoelectric voltage as a function of temperature gradient), and a low
thermal conductivity κ. The challenge is that these three properties are strongly
interrelated in a conflicting manner (1). On page 722 of this issue, Roychowdhury
et al. (2) have found a way to partially break these ties in silver antimony telluride
(AgSbTe2) with the addition of cadmium (Cd) cations, which increase the ordering
in this inherently disordered thermoelectric material.
article_processing_charge: No
article_type: letter_note
author:
- first_name: Yu
full_name: Liu, Yu
id: 2A70014E-F248-11E8-B48F-1D18A9856A87
last_name: Liu
orcid: 0000-0001-7313-6740
- first_name: Maria
full_name: Ibáñez, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibáñez
orcid: 0000-0001-5013-2843
citation:
ama: Liu Y, Ibáñez M. Tidying up the mess. Science. 2021;371(6530):678-679.
doi:10.1126/science.abg0886
apa: Liu, Y., & Ibáñez, M. (2021). Tidying up the mess. Science. American
Association for the Advancement of Science. https://doi.org/10.1126/science.abg0886
chicago: Liu, Yu, and Maria Ibáñez. “Tidying up the Mess.” Science. American
Association for the Advancement of Science, 2021. https://doi.org/10.1126/science.abg0886.
ieee: Y. Liu and M. Ibáñez, “Tidying up the mess,” Science, vol. 371, no.
6530. American Association for the Advancement of Science, pp. 678–679, 2021.
ista: Liu Y, Ibáñez M. 2021. Tidying up the mess. Science. 371(6530), 678–679.
mla: Liu, Yu, and Maria Ibáñez. “Tidying up the Mess.” Science, vol. 371,
no. 6530, American Association for the Advancement of Science, 2021, pp. 678–79,
doi:10.1126/science.abg0886.
short: Y. Liu, M. Ibáñez, Science 371 (2021) 678–679.
date_created: 2022-03-03T09:51:48Z
date_published: 2021-02-12T00:00:00Z
date_updated: 2023-08-17T07:00:35Z
day: '12'
department:
- _id: MaIb
doi: 10.1126/science.abg0886
external_id:
isi:
- '000617551600027'
pmid:
- '33574201'
intvolume: ' 371'
isi: 1
issue: '6530'
keyword:
- multidisciplinary
language:
- iso: eng
month: '02'
oa_version: None
page: 678-679
pmid: 1
publication: Science
publication_identifier:
eissn:
- 1095-9203
issn:
- 0036-8075
publication_status: published
publisher: American Association for the Advancement of Science
quality_controlled: '1'
scopus_import: '1'
status: public
title: Tidying up the mess
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 371
year: '2021'
...
---
_id: '10858'
abstract:
- lang: eng
text: The cost-effective conversion of low-grade heat into electricity using thermoelectric
devices requires developing alternative materials and material processing technologies
able to reduce the currently high device manufacturing costs. In this direction,
thermoelectric materials that do not rely on rare or toxic elements such as tellurium
or lead need to be produced using high-throughput technologies not involving high
temperatures and long processes. Bi2Se3 is an obvious possible Te-free alternative
to Bi2Te3 for ambient temperature thermoelectric applications, but its performance
is still low for practical applications, and additional efforts toward finding
proper dopants are required. Here, we report a scalable method to produce Bi2Se3
nanosheets at low synthesis temperatures. We studied the influence of different
dopants on the thermoelectric properties of this material. Among the elements
tested, we demonstrated that Sn doping resulted in the best performance. Sn incorporation
resulted in a significant improvement to the Bi2Se3 Seebeck coefficient and a
reduction in the thermal conductivity in the direction of the hot-press axis,
resulting in an overall 60% improvement in the thermoelectric figure of merit
of Bi2Se3.
acknowledgement: "M.L., Y.Z., T.Z. and K.X. thank the China Scholarship Council for
their scholarship\r\nsupport. Y.L. acknowledges funding from the European Union’s
Horizon 2020 research and\r\ninnovation program under the Marie Sklodowska-Curie
grant agreement No. 754411. J.L. thanks the ICREA Academia program and projects
MICINN/FEDER RTI2018-093996-B-C31 and G.C. 2017 SGR 128. ICN2 acknowledges funding
from the Generalitat de Catalunya 2017 SGR 327 and the Spanish MINECO ENE2017-85087-C3."
article_number: '1827'
article_processing_charge: No
article_type: original
author:
- first_name: Mengyao
full_name: Li, Mengyao
last_name: Li
- first_name: Yu
full_name: Zhang, Yu
last_name: Zhang
- first_name: Ting
full_name: Zhang, Ting
last_name: Zhang
- first_name: Yong
full_name: Zuo, Yong
last_name: Zuo
- first_name: Ke
full_name: Xiao, Ke
last_name: Xiao
- first_name: Jordi
full_name: Arbiol, Jordi
last_name: Arbiol
- first_name: Jordi
full_name: Llorca, Jordi
last_name: Llorca
- first_name: Yu
full_name: Liu, Yu
id: 2A70014E-F248-11E8-B48F-1D18A9856A87
last_name: Liu
orcid: 0000-0001-7313-6740
- first_name: Andreu
full_name: Cabot, Andreu
last_name: Cabot
citation:
ama: Li M, Zhang Y, Zhang T, et al. Enhanced thermoelectric performance of n-type
Bi2Se3 nanosheets through Sn doping. Nanomaterials. 2021;11(7). doi:10.3390/nano11071827
apa: Li, M., Zhang, Y., Zhang, T., Zuo, Y., Xiao, K., Arbiol, J., … Cabot, A. (2021).
Enhanced thermoelectric performance of n-type Bi2Se3 nanosheets through Sn doping.
Nanomaterials. MDPI. https://doi.org/10.3390/nano11071827
chicago: Li, Mengyao, Yu Zhang, Ting Zhang, Yong Zuo, Ke Xiao, Jordi Arbiol, Jordi
Llorca, Yu Liu, and Andreu Cabot. “Enhanced Thermoelectric Performance of N-Type
Bi2Se3 Nanosheets through Sn Doping.” Nanomaterials. MDPI, 2021. https://doi.org/10.3390/nano11071827.
ieee: M. Li et al., “Enhanced thermoelectric performance of n-type Bi2Se3
nanosheets through Sn doping,” Nanomaterials, vol. 11, no. 7. MDPI, 2021.
ista: Li M, Zhang Y, Zhang T, Zuo Y, Xiao K, Arbiol J, Llorca J, Liu Y, Cabot A.
2021. Enhanced thermoelectric performance of n-type Bi2Se3 nanosheets through
Sn doping. Nanomaterials. 11(7), 1827.
mla: Li, Mengyao, et al. “Enhanced Thermoelectric Performance of N-Type Bi2Se3 Nanosheets
through Sn Doping.” Nanomaterials, vol. 11, no. 7, 1827, MDPI, 2021, doi:10.3390/nano11071827.
short: M. Li, Y. Zhang, T. Zhang, Y. Zuo, K. Xiao, J. Arbiol, J. Llorca, Y. Liu,
A. Cabot, Nanomaterials 11 (2021).
date_created: 2022-03-18T09:45:02Z
date_published: 2021-07-14T00:00:00Z
date_updated: 2023-08-17T07:08:30Z
day: '14'
ddc:
- '540'
department:
- _id: MaIb
doi: 10.3390/nano11071827
ec_funded: 1
external_id:
isi:
- '000676570000001'
file:
- access_level: open_access
checksum: f28a8b5cf80f5605828359bb398463b0
content_type: application/pdf
creator: dernst
date_created: 2022-03-18T09:53:15Z
date_updated: 2022-03-18T09:53:15Z
file_id: '10859'
file_name: 2021_Nanomaterials_Li.pdf
file_size: 4867547
relation: main_file
success: 1
file_date_updated: 2022-03-18T09:53:15Z
has_accepted_license: '1'
intvolume: ' 11'
isi: 1
issue: '7'
keyword:
- General Materials Science
- General Chemical Engineering
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Nanomaterials
publication_identifier:
issn:
- 2079-4991
publication_status: published
publisher: MDPI
quality_controlled: '1'
scopus_import: '1'
status: public
title: Enhanced thermoelectric performance of n-type Bi2Se3 nanosheets through Sn
doping
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 11
year: '2021'
...
---
_id: '10834'
abstract:
- lang: eng
text: Hematopoietic-specific protein 1 (Hem1) is an essential subunit of the WAVE
regulatory complex (WRC) in immune cells. WRC is crucial for Arp2/3 complex activation
and the protrusion of branched actin filament networks. Moreover, Hem1 loss of
function in immune cells causes autoimmune diseases in humans. Here, we show that
genetic removal of Hem1 in macrophages diminishes frequency and efficacy of phagocytosis
as well as phagocytic cup formation in addition to defects in lamellipodial protrusion
and migration. Moreover, Hem1-null macrophages displayed strong defects in cell
adhesion despite unaltered podosome formation and concomitant extracellular matrix
degradation. Specifically, dynamics of both adhesion and de-adhesion as well as
concomitant phosphorylation of paxillin and focal adhesion kinase (FAK) were significantly
compromised. Accordingly, disruption of WRC function in non-hematopoietic cells
coincided with both defects in adhesion turnover and altered FAK and paxillin
phosphorylation. Consistently, platelets exhibited reduced adhesion and diminished
integrin αIIbβ3 activation upon WRC removal. Interestingly, adhesion phenotypes,
but not lamellipodia formation, were partially rescued by small molecule activation
of FAK. A full rescue of the phenotype, including lamellipodia formation, required
not only the presence of WRCs but also their binding to and activation by Rac.
Collectively, our results uncover that WRC impacts on integrin-dependent processes
in a FAK-dependent manner, controlling formation and dismantling of adhesions,
relevant for properly grabbing onto extracellular surfaces and particles during
cell edge expansion, like in migration or phagocytosis.
acknowledgement: We are grateful to Silvia Prettin, Ina Schleicher, and Petra Hagendorff
for expert technical assistance; David Dettbarn for animal keeping and breeding;
and Lothar Gröbe and Maria Höxter for cell sorting. We also thank Werner Tegge for
peptides and Giorgio Scita for antibodies. This work was supported, in part, by
the Deutsche Forschungsgemeinschaft (DFG), Priority Programm SPP1150 (to T.E.B.S.,
K.R., and M. Sixt), and by DFG grant GRK2223/1 (to K.R.). T.E.B.S. acknowledges
support by the Helmholtz Society through HGF impulse fund W2/W3-066 and M. Schnoor
by the Mexican Council for Science and Technology (CONACyT, 284292 ), Fund SEP-Cinvestav
( 108 ), and the Royal Society, UK (Newton Advanced Fellowship, NAF/R1/180017 ).
article_processing_charge: No
article_type: original
author:
- first_name: Stephanie
full_name: Stahnke, Stephanie
last_name: Stahnke
- first_name: Hermann
full_name: Döring, Hermann
last_name: Döring
- first_name: Charly
full_name: Kusch, Charly
last_name: Kusch
- first_name: David J.J.
full_name: de Gorter, David J.J.
last_name: de Gorter
- first_name: Sebastian
full_name: Dütting, Sebastian
last_name: Dütting
- first_name: Aleks
full_name: Guledani, Aleks
last_name: Guledani
- first_name: Irina
full_name: Pleines, Irina
last_name: Pleines
- first_name: Michael
full_name: Schnoor, Michael
last_name: Schnoor
- first_name: Michael K
full_name: Sixt, Michael K
id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
last_name: Sixt
orcid: 0000-0002-6620-9179
- first_name: Robert
full_name: Geffers, Robert
last_name: Geffers
- first_name: Manfred
full_name: Rohde, Manfred
last_name: Rohde
- first_name: Mathias
full_name: Müsken, Mathias
last_name: Müsken
- first_name: Frieda
full_name: Kage, Frieda
last_name: Kage
- first_name: Anika
full_name: Steffen, Anika
last_name: Steffen
- first_name: Jan
full_name: Faix, Jan
last_name: Faix
- first_name: Bernhard
full_name: Nieswandt, Bernhard
last_name: Nieswandt
- first_name: Klemens
full_name: Rottner, Klemens
last_name: Rottner
- first_name: Theresia E.B.
full_name: Stradal, Theresia E.B.
last_name: Stradal
citation:
ama: Stahnke S, Döring H, Kusch C, et al. Loss of Hem1 disrupts macrophage function
and impacts migration, phagocytosis, and integrin-mediated adhesion. Current
Biology. 2021;31(10):2051-2064.e8. doi:10.1016/j.cub.2021.02.043
apa: Stahnke, S., Döring, H., Kusch, C., de Gorter, D. J. J., Dütting, S., Guledani,
A., … Stradal, T. E. B. (2021). Loss of Hem1 disrupts macrophage function and
impacts migration, phagocytosis, and integrin-mediated adhesion. Current Biology.
Elsevier. https://doi.org/10.1016/j.cub.2021.02.043
chicago: Stahnke, Stephanie, Hermann Döring, Charly Kusch, David J.J. de Gorter,
Sebastian Dütting, Aleks Guledani, Irina Pleines, et al. “Loss of Hem1 Disrupts
Macrophage Function and Impacts Migration, Phagocytosis, and Integrin-Mediated
Adhesion.” Current Biology. Elsevier, 2021. https://doi.org/10.1016/j.cub.2021.02.043.
ieee: S. Stahnke et al., “Loss of Hem1 disrupts macrophage function and impacts
migration, phagocytosis, and integrin-mediated adhesion,” Current Biology,
vol. 31, no. 10. Elsevier, p. 2051–2064.e8, 2021.
ista: Stahnke S, Döring H, Kusch C, de Gorter DJJ, Dütting S, Guledani A, Pleines
I, Schnoor M, Sixt MK, Geffers R, Rohde M, Müsken M, Kage F, Steffen A, Faix J,
Nieswandt B, Rottner K, Stradal TEB. 2021. Loss of Hem1 disrupts macrophage function
and impacts migration, phagocytosis, and integrin-mediated adhesion. Current Biology.
31(10), 2051–2064.e8.
mla: Stahnke, Stephanie, et al. “Loss of Hem1 Disrupts Macrophage Function and Impacts
Migration, Phagocytosis, and Integrin-Mediated Adhesion.” Current Biology,
vol. 31, no. 10, Elsevier, 2021, p. 2051–2064.e8, doi:10.1016/j.cub.2021.02.043.
short: S. Stahnke, H. Döring, C. Kusch, D.J.J. de Gorter, S. Dütting, A. Guledani,
I. Pleines, M. Schnoor, M.K. Sixt, R. Geffers, M. Rohde, M. Müsken, F. Kage, A.
Steffen, J. Faix, B. Nieswandt, K. Rottner, T.E.B. Stradal, Current Biology 31
(2021) 2051–2064.e8.
date_created: 2022-03-08T07:51:04Z
date_published: 2021-05-24T00:00:00Z
date_updated: 2023-08-17T07:01:14Z
day: '24'
department:
- _id: MiSi
doi: 10.1016/j.cub.2021.02.043
external_id:
isi:
- '000654652200002'
pmid:
- '33711252'
intvolume: ' 31'
isi: 1
issue: '10'
keyword:
- General Agricultural and Biological Sciences
- General Biochemistry
- Genetics and Molecular Biology
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1101/2020.03.24.005835
month: '05'
oa: 1
oa_version: Preprint
page: 2051-2064.e8
pmid: 1
publication: Current Biology
publication_identifier:
issn:
- 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Loss of Hem1 disrupts macrophage function and impacts migration, phagocytosis,
and integrin-mediated adhesion
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 31
year: '2021'
...
---
_id: '9935'
abstract:
- lang: eng
text: "We present a deterministic O(log log log n)-round low-space Massively Parallel
Computation (MPC) algorithm for the classical problem of (Δ+1)-coloring on n-vertex
graphs. In this model, every machine has sublinear local space of size n^φ for
any arbitrary constant φ \\in (0,1). Our algorithm works under the relaxed setting
where each machine is allowed to perform exponential local computations, while
respecting the n^φ space and bandwidth limitations.\r\n\r\nOur key technical contribution
is a novel derandomization of the ingenious (Δ+1)-coloring local algorithm by
Chang-Li-Pettie (STOC 2018, SIAM J. Comput. 2020). The Chang-Li-Pettie algorithm
runs in T_local =poly(loglog n) rounds, which sets the state-of-the-art randomized
round complexity for the problem in the local model. Our derandomization employs
a combination of tools, notably pseudorandom generators (PRG) and bounded-independence
hash functions.\r\n\r\nThe achieved round complexity of O(logloglog n) rounds
matches the bound of log(T_local ), which currently serves an upper bound barrier
for all known randomized algorithms for locally-checkable problems in this model.
Furthermore, no deterministic sublogarithmic low-space MPC algorithms for the
(Δ+1)-coloring problem have been known before."
acknowledgement: This work is partially supported by a Weizmann-UK Making Connections
Grant, the Centre for Discrete Mathematics and its Applications (DIMAP), IBM Faculty
Award, EPSRC award EP/V01305X/1, European Research Council (ERC) Grant No. 949083,
the Minerva foundation with funding from the Federal German Ministry for Education
and Research No. 713238, and the European Union’s Horizon 2020 programme under the
Marie Skłodowska-Curie grant agreement No 754411.
article_processing_charge: No
author:
- first_name: Artur
full_name: Czumaj, Artur
last_name: Czumaj
- first_name: Peter
full_name: Davies, Peter
id: 11396234-BB50-11E9-B24C-90FCE5697425
last_name: Davies
orcid: 0000-0002-5646-9524
- first_name: Merav
full_name: Parter, Merav
last_name: Parter
citation:
ama: 'Czumaj A, Davies P, Parter M. Improved deterministic (Δ+1) coloring in low-space
MPC. In: Proceedings of the 2021 ACM Symposium on Principles of Distributed
Computing. Association for Computing Machinery; 2021:469–479. doi:10.1145/3465084.3467937'
apa: 'Czumaj, A., Davies, P., & Parter, M. (2021). Improved deterministic (Δ+1)
coloring in low-space MPC. In Proceedings of the 2021 ACM Symposium on Principles
of Distributed Computing (pp. 469–479). Virtual, Italy: Association for Computing
Machinery. https://doi.org/10.1145/3465084.3467937'
chicago: Czumaj, Artur, Peter Davies, and Merav Parter. “Improved Deterministic
(Δ+1) Coloring in Low-Space MPC.” In Proceedings of the 2021 ACM Symposium
on Principles of Distributed Computing, 469–479. Association for Computing
Machinery, 2021. https://doi.org/10.1145/3465084.3467937.
ieee: A. Czumaj, P. Davies, and M. Parter, “Improved deterministic (Δ+1) coloring
in low-space MPC,” in Proceedings of the 2021 ACM Symposium on Principles of
Distributed Computing, Virtual, Italy, 2021, pp. 469–479.
ista: 'Czumaj A, Davies P, Parter M. 2021. Improved deterministic (Δ+1) coloring
in low-space MPC. Proceedings of the 2021 ACM Symposium on Principles of Distributed
Computing. PODC: Symposium on Principles of Distributed Computing, 469–479.'
mla: Czumaj, Artur, et al. “Improved Deterministic (Δ+1) Coloring in Low-Space MPC.”
Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing,
Association for Computing Machinery, 2021, pp. 469–479, doi:10.1145/3465084.3467937.
short: A. Czumaj, P. Davies, M. Parter, in:, Proceedings of the 2021 ACM Symposium
on Principles of Distributed Computing, Association for Computing Machinery, 2021,
pp. 469–479.
conference:
end_date: 2021-07-30
location: Virtual, Italy
name: 'PODC: Symposium on Principles of Distributed Computing'
start_date: 2021-07-26
date_created: 2021-08-17T18:14:15Z
date_published: 2021-07-21T00:00:00Z
date_updated: 2023-08-17T07:11:03Z
day: '21'
department:
- _id: DaAl
doi: 10.1145/3465084.3467937
ec_funded: 1
external_id:
isi:
- '000744439800048'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: http://wrap.warwick.ac.uk/153753
month: '07'
oa: 1
oa_version: Submitted Version
page: 469–479
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing
publication_identifier:
isbn:
- 978-1-4503-8548-0
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
status: public
title: Improved deterministic (Δ+1) coloring in low-space MPC
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
year: '2021'
...
---
_id: '10856'
abstract:
- lang: eng
text: "We study the properties of the maximal volume k-dimensional sections of the
n-dimensional cube [−1, 1]n. We obtain a first order necessary condition for a
k-dimensional subspace to be a local maximizer of the volume of such sections,
which we formulate in a geometric way. We estimate the length of the projection
of a vector of the standard basis of Rn onto a k-dimensional subspace that maximizes
the volume of the intersection. We \x1Cnd the optimal upper bound on the volume
of a planar section of the cube [−1, 1]n , n ≥ 2."
acknowledgement: "The authors acknowledge the support of the grant of the Russian
Government N 075-15-\r\n2019-1926. G.I.was supported also by the SwissNational Science
Foundation grant 200021-179133. The authors are very grateful to the anonymous reviewer
for valuable remarks."
article_processing_charge: No
article_type: original
author:
- first_name: Grigory
full_name: Ivanov, Grigory
id: 87744F66-5C6F-11EA-AFE0-D16B3DDC885E
last_name: Ivanov
- first_name: Igor
full_name: Tsiutsiurupa, Igor
last_name: Tsiutsiurupa
citation:
ama: Ivanov G, Tsiutsiurupa I. On the volume of sections of the cube. Analysis
and Geometry in Metric Spaces. 2021;9(1):1-18. doi:10.1515/agms-2020-0103
apa: Ivanov, G., & Tsiutsiurupa, I. (2021). On the volume of sections of the
cube. Analysis and Geometry in Metric Spaces. De Gruyter. https://doi.org/10.1515/agms-2020-0103
chicago: Ivanov, Grigory, and Igor Tsiutsiurupa. “On the Volume of Sections of the
Cube.” Analysis and Geometry in Metric Spaces. De Gruyter, 2021. https://doi.org/10.1515/agms-2020-0103.
ieee: G. Ivanov and I. Tsiutsiurupa, “On the volume of sections of the cube,” Analysis
and Geometry in Metric Spaces, vol. 9, no. 1. De Gruyter, pp. 1–18, 2021.
ista: Ivanov G, Tsiutsiurupa I. 2021. On the volume of sections of the cube. Analysis
and Geometry in Metric Spaces. 9(1), 1–18.
mla: Ivanov, Grigory, and Igor Tsiutsiurupa. “On the Volume of Sections of the Cube.”
Analysis and Geometry in Metric Spaces, vol. 9, no. 1, De Gruyter, 2021,
pp. 1–18, doi:10.1515/agms-2020-0103.
short: G. Ivanov, I. Tsiutsiurupa, Analysis and Geometry in Metric Spaces 9 (2021)
1–18.
date_created: 2022-03-18T09:25:14Z
date_published: 2021-01-29T00:00:00Z
date_updated: 2023-08-17T07:07:58Z
day: '29'
ddc:
- '510'
department:
- _id: UlWa
doi: 10.1515/agms-2020-0103
external_id:
arxiv:
- '2004.02674'
isi:
- '000734286800001'
file:
- access_level: open_access
checksum: 7e615ac8489f5eae580b6517debfdc53
content_type: application/pdf
creator: dernst
date_created: 2022-03-18T09:31:59Z
date_updated: 2022-03-18T09:31:59Z
file_id: '10857'
file_name: 2021_AnalysisMetricSpaces_Ivanov.pdf
file_size: 789801
relation: main_file
success: 1
file_date_updated: 2022-03-18T09:31:59Z
has_accepted_license: '1'
intvolume: ' 9'
isi: 1
issue: '1'
keyword:
- Applied Mathematics
- Geometry and Topology
- Analysis
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 1-18
publication: Analysis and Geometry in Metric Spaces
publication_identifier:
issn:
- 2299-3274
publication_status: published
publisher: De Gruyter
quality_controlled: '1'
scopus_import: '1'
status: public
title: On the volume of sections of the cube
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 9
year: '2021'
...
---
_id: '9933'
abstract:
- lang: eng
text: "In this paper, we study the power and limitations of component-stable algorithms
in the low-space model of Massively Parallel Computation (MPC). Recently Ghaffari,
Kuhn and Uitto (FOCS 2019) introduced the class of component-stable low-space
MPC algorithms, which are, informally, defined as algorithms for which the outputs
reported by the nodes in different connected components are required to be independent.
This very natural notion was introduced to capture most (if not all) of the known
efficient MPC algorithms to date, and it was the first general class of MPC algorithms
for which one can show non-trivial conditional lower bounds. In this paper we
enhance the framework of component-stable algorithms and investigate its effect
on the complexity of randomized and deterministic low-space MPC. Our key contributions
include: 1) We revise and formalize the lifting approach of Ghaffari, Kuhn and
Uitto. This requires a very delicate amendment of the notion of component stability,
which allows us to fill in gaps in the earlier arguments. 2) We also extend the
framework to obtain conditional lower bounds for deterministic algorithms and
fine-grained lower bounds that depend on the maximum degree Δ. 3) We demonstrate
a collection of natural graph problems for which non-component-stable algorithms
break the conditional lower bound obtained for component-stable algorithms. This
implies that, for both deterministic and randomized algorithms, component-stable
algorithms are conditionally weaker than the non-component-stable ones.\r\n\r\nAltogether
our results imply that component-stability might limit the computational power
of the low-space MPC model, paving the way for improved upper bounds that escape
the conditional lower bound setting of Ghaffari, Kuhn, and Uitto."
acknowledgement: This work is partially supported by a Weizmann-UK Making Connections
Grant, the Centre for Discrete Mathematics and its Applications (DIMAP), IBM Faculty
Award, EPSRC award EP/V01305X/1, European Research Council (ERC) Grant No. 949083,
the Minerva foundation with funding from the Federal German Ministry for Education
and Research No. 713238, and the European Union’s Horizon 2020 programme under the
Marie Skłodowska-Curie grant agreement No 754411.
article_processing_charge: No
author:
- first_name: Artur
full_name: Czumaj, Artur
last_name: Czumaj
- first_name: Peter
full_name: Davies, Peter
id: 11396234-BB50-11E9-B24C-90FCE5697425
last_name: Davies
orcid: 0000-0002-5646-9524
- first_name: Merav
full_name: Parter, Merav
last_name: Parter
citation:
ama: 'Czumaj A, Davies P, Parter M. Component stability in low-space massively parallel
computation. In: Proceedings of the 2021 ACM Symposium on Principles of Distributed
Computing. Association for Computing Machinery; 2021:481–491. doi:10.1145/3465084.3467903'
apa: 'Czumaj, A., Davies, P., & Parter, M. (2021). Component stability in low-space
massively parallel computation. In Proceedings of the 2021 ACM Symposium on
Principles of Distributed Computing (pp. 481–491). Virtual, Italy: Association
for Computing Machinery. https://doi.org/10.1145/3465084.3467903'
chicago: Czumaj, Artur, Peter Davies, and Merav Parter. “Component Stability in
Low-Space Massively Parallel Computation.” In Proceedings of the 2021 ACM Symposium
on Principles of Distributed Computing, 481–491. Association for Computing
Machinery, 2021. https://doi.org/10.1145/3465084.3467903.
ieee: A. Czumaj, P. Davies, and M. Parter, “Component stability in low-space massively
parallel computation,” in Proceedings of the 2021 ACM Symposium on Principles
of Distributed Computing, Virtual, Italy, 2021, pp. 481–491.
ista: 'Czumaj A, Davies P, Parter M. 2021. Component stability in low-space massively
parallel computation. Proceedings of the 2021 ACM Symposium on Principles of Distributed
Computing. PODC: Principles of Distributed Computing, 481–491.'
mla: Czumaj, Artur, et al. “Component Stability in Low-Space Massively Parallel
Computation.” Proceedings of the 2021 ACM Symposium on Principles of Distributed
Computing, Association for Computing Machinery, 2021, pp. 481–491, doi:10.1145/3465084.3467903.
short: A. Czumaj, P. Davies, M. Parter, in:, Proceedings of the 2021 ACM Symposium
on Principles of Distributed Computing, Association for Computing Machinery, 2021,
pp. 481–491.
conference:
end_date: 2021-07-30
location: Virtual, Italy
name: 'PODC: Principles of Distributed Computing'
start_date: 2021-07-26
date_created: 2021-08-17T18:11:16Z
date_published: 2021-07-21T00:00:00Z
date_updated: 2023-08-17T07:11:32Z
day: '21'
department:
- _id: DaAl
doi: 10.1145/3465084.3467903
ec_funded: 1
external_id:
arxiv:
- '2106.01880'
isi:
- '000744439800049'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2106.01880
month: '07'
oa: 1
oa_version: Submitted Version
page: 481–491
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing
publication_identifier:
isbn:
- '9781450385480'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
status: public
title: Component stability in low-space massively parallel computation
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
year: '2021'
...
---
_id: '9627'
abstract:
- lang: eng
text: "We compute the deficiency spaces of operators of the form \U0001D43B\U0001D434⊗̂
\U0001D43C+\U0001D43C⊗̂ \U0001D43B\U0001D435, for symmetric \U0001D43B\U0001D434
and self-adjoint \U0001D43B\U0001D435. This enables us to construct self-adjoint
extensions (if they exist) by means of von Neumann's theory. The structure of
the deficiency spaces for this case was asserted already in Ibort et al. [Boundary
dynamics driven entanglement, J. Phys. A: Math. Theor. 47(38) (2014) 385301],
but only proven under the restriction of \U0001D43B\U0001D435 having discrete,
non-degenerate spectrum."
acknowledgement: M. W. gratefully acknowledges financial support by the German Academic
Scholarship Foundation (Studienstiftung des deutschen Volkes). T.W. thanks PAO Gazprom
Neft, the Euler International Mathematical Institute in Saint Petersburg and ORISA
GmbH for their financial support in the form of scholarships during his Master's
and Bachelor's studies respectively. The authors want to thank Mark Malamud for
pointing out the reference [1] to them. This work was supported by the Ministry
of Science and Higher Education of the Russian Federation, agreement No 075-15-2019-1619.
article_processing_charge: No
article_type: original
author:
- first_name: Daniel
full_name: Lenz, Daniel
last_name: Lenz
- first_name: Timon
full_name: Weinmann, Timon
last_name: Weinmann
- first_name: Melchior
full_name: Wirth, Melchior
id: 88644358-0A0E-11EA-8FA5-49A33DDC885E
last_name: Wirth
orcid: 0000-0002-0519-4241
citation:
ama: Lenz D, Weinmann T, Wirth M. Self-adjoint extensions of bipartite Hamiltonians.
Proceedings of the Edinburgh Mathematical Society. 2021;64(3):443-447.
doi:10.1017/S0013091521000080
apa: Lenz, D., Weinmann, T., & Wirth, M. (2021). Self-adjoint extensions of
bipartite Hamiltonians. Proceedings of the Edinburgh Mathematical Society.
Cambridge University Press. https://doi.org/10.1017/S0013091521000080
chicago: Lenz, Daniel, Timon Weinmann, and Melchior Wirth. “Self-Adjoint Extensions
of Bipartite Hamiltonians.” Proceedings of the Edinburgh Mathematical Society.
Cambridge University Press, 2021. https://doi.org/10.1017/S0013091521000080.
ieee: D. Lenz, T. Weinmann, and M. Wirth, “Self-adjoint extensions of bipartite
Hamiltonians,” Proceedings of the Edinburgh Mathematical Society, vol.
64, no. 3. Cambridge University Press, pp. 443–447, 2021.
ista: Lenz D, Weinmann T, Wirth M. 2021. Self-adjoint extensions of bipartite Hamiltonians.
Proceedings of the Edinburgh Mathematical Society. 64(3), 443–447.
mla: Lenz, Daniel, et al. “Self-Adjoint Extensions of Bipartite Hamiltonians.” Proceedings
of the Edinburgh Mathematical Society, vol. 64, no. 3, Cambridge University
Press, 2021, pp. 443–47, doi:10.1017/S0013091521000080.
short: D. Lenz, T. Weinmann, M. Wirth, Proceedings of the Edinburgh Mathematical
Society 64 (2021) 443–447.
date_created: 2021-07-04T22:01:24Z
date_published: 2021-08-01T00:00:00Z
date_updated: 2023-08-17T07:12:05Z
day: '01'
department:
- _id: JaMa
doi: 10.1017/S0013091521000080
external_id:
arxiv:
- '1912.03670'
isi:
- '000721363700003'
intvolume: ' 64'
isi: 1
issue: '3'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1017/S0013091521000080
month: '08'
oa: 1
oa_version: Published Version
page: 443-447
publication: Proceedings of the Edinburgh Mathematical Society
publication_identifier:
eissn:
- 1464-3839
issn:
- 0013-0915
publication_status: published
publisher: Cambridge University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Self-adjoint extensions of bipartite Hamiltonians
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 64
year: '2021'
...
---
_id: '7901'
abstract:
- lang: eng
text: We derive rigorously the leading order of the correlation energy of a Fermi
gas in a scaling regime of high density and weak interaction. The result verifies
the prediction of the random-phase approximation. Our proof refines the method
of collective bosonization in three dimensions. We approximately diagonalize an
effective Hamiltonian describing approximately bosonic collective excitations
around the Hartree–Fock state, while showing that gapless and non-collective excitations
have only a negligible effect on the ground state energy.
acknowledgement: We thank Christian Hainzl for helpful discussions and a referee for
very careful reading of the paper and many helpful suggestions. NB and RS were supported
by the European Research Council (ERC) under the European Union’s Horizon 2020 research
and innovation programme (grant agreement No. 694227). Part of the research of NB
was conducted on the RZD18 Nice–Milan–Vienna–Moscow. NB thanks Elliott H. Lieb and
Peter Otte for explanations about the Luttinger model. PTN has received funding
from the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under
Germany’s Excellence Strategy (EXC-2111-390814868). MP acknowledges financial support
from the European Research Council (ERC) under the European Union’s Horizon 2020
research and innovation programme (ERC StG MaMBoQ, grant agreement No. 802901).
BS gratefully acknowledges financial support from the NCCR SwissMAP, from the Swiss
National Science Foundation through the Grant “Dynamical and energetic properties
of Bose-Einstein condensates” and from the European Research Council through the
ERC-AdG CLaQS (grant agreement No. 834782). All authors acknowledge support for
workshop participation from Mathematisches Forschungsinstitut Oberwolfach (Leibniz
Association). NB, PTN, BS, and RS acknowledge support for workshop participation
from Fondation des Treilles.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Niels P
full_name: Benedikter, Niels P
id: 3DE6C32A-F248-11E8-B48F-1D18A9856A87
last_name: Benedikter
orcid: 0000-0002-1071-6091
- first_name: Phan Thành
full_name: Nam, Phan Thành
last_name: Nam
- first_name: Marcello
full_name: Porta, Marcello
last_name: Porta
- first_name: Benjamin
full_name: Schlein, Benjamin
last_name: Schlein
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Benedikter NP, Nam PT, Porta M, Schlein B, Seiringer R. Correlation energy
of a weakly interacting Fermi gas. Inventiones Mathematicae. 2021;225:885-979.
doi:10.1007/s00222-021-01041-5
apa: Benedikter, N. P., Nam, P. T., Porta, M., Schlein, B., & Seiringer, R.
(2021). Correlation energy of a weakly interacting Fermi gas. Inventiones Mathematicae.
Springer. https://doi.org/10.1007/s00222-021-01041-5
chicago: Benedikter, Niels P, Phan Thành Nam, Marcello Porta, Benjamin Schlein,
and Robert Seiringer. “Correlation Energy of a Weakly Interacting Fermi Gas.”
Inventiones Mathematicae. Springer, 2021. https://doi.org/10.1007/s00222-021-01041-5.
ieee: N. P. Benedikter, P. T. Nam, M. Porta, B. Schlein, and R. Seiringer, “Correlation
energy of a weakly interacting Fermi gas,” Inventiones Mathematicae, vol.
225. Springer, pp. 885–979, 2021.
ista: Benedikter NP, Nam PT, Porta M, Schlein B, Seiringer R. 2021. Correlation
energy of a weakly interacting Fermi gas. Inventiones Mathematicae. 225, 885–979.
mla: Benedikter, Niels P., et al. “Correlation Energy of a Weakly Interacting Fermi
Gas.” Inventiones Mathematicae, vol. 225, Springer, 2021, pp. 885–979,
doi:10.1007/s00222-021-01041-5.
short: N.P. Benedikter, P.T. Nam, M. Porta, B. Schlein, R. Seiringer, Inventiones
Mathematicae 225 (2021) 885–979.
date_created: 2020-05-28T16:48:20Z
date_published: 2021-05-03T00:00:00Z
date_updated: 2023-08-21T06:30:30Z
day: '03'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s00222-021-01041-5
ec_funded: 1
external_id:
arxiv:
- '2005.08933'
isi:
- '000646573600001'
file:
- access_level: open_access
checksum: f38c79dfd828cdc7f49a34b37b83d376
content_type: application/pdf
creator: dernst
date_created: 2022-05-16T12:23:40Z
date_updated: 2022-05-16T12:23:40Z
file_id: '11386'
file_name: 2021_InventMath_Benedikter.pdf
file_size: 1089319
relation: main_file
success: 1
file_date_updated: 2022-05-16T12:23:40Z
has_accepted_license: '1'
intvolume: ' 225'
isi: 1
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 885-979
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '694227'
name: Analysis of quantum many-body systems
publication: Inventiones Mathematicae
publication_identifier:
eissn:
- 1432-1297
issn:
- 0020-9910
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
status: public
title: Correlation energy of a weakly interacting Fermi gas
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 225
year: '2021'
...
---
_id: '13455'
abstract:
- lang: eng
text: The majority of massive stars live in binary or multiple systems and will
interact with a companion during their lifetimes, which helps to explain the observed
diversity of core-collapse supernovae. Donor stars in binary systems can lose
most of their hydrogen-rich envelopes through mass transfer. As a result, not
only are the surface properties affected, but so is the core structure. However,
most calculations of the core-collapse properties of massive stars rely on single-star
models. We present a systematic study of the difference between the pre-supernova
structures of single stars and stars of the same initial mass (11–21 M⊙) that
have been stripped due to stable post-main-sequence mass transfer at solar metallicity.
We present the pre-supernova core composition with novel diagrams that give an
intuitive representation of the isotope distribution. As shown in previous studies,
at the edge of the carbon-oxygen core, the binary-stripped star models contain
an extended gradient of carbon, oxygen, and neon. This layer remains until core
collapse and is more extended in mass for higher initial stellar masses. It originates
from the receding of the convective helium core during core helium burning in
binary-stripped stars, which does not occur in single-star models. We find that
this same evolutionary phase leads to systematic differences in the final density
and nuclear energy generation profiles. Binary-stripped star models have systematically
higher total masses of carbon at the moment of core collapse compared to single-star
models, which likely results in systematically different supernova yields. In
about half of our models, the silicon-burning and oxygen-rich layers merge after
core silicon burning. We discuss the implications of our findings for the “explodability”,
supernova observations, and nucleosynthesis of these stars. Our models are publicly
available and can be readily used as input for detailed supernova simulations.
article_number: A58
article_processing_charge: No
article_type: original
author:
- first_name: E.
full_name: Laplace, E.
last_name: Laplace
- first_name: S.
full_name: Justham, S.
last_name: Justham
- first_name: M.
full_name: Renzo, M.
last_name: Renzo
- first_name: Ylva Louise Linsdotter
full_name: Götberg, Ylva Louise Linsdotter
id: d0648d0c-0f64-11ee-a2e0-dd0faa2e4f7d
last_name: Götberg
orcid: 0000-0002-6960-6911
- first_name: R.
full_name: Farmer, R.
last_name: Farmer
- first_name: D.
full_name: Vartanyan, D.
last_name: Vartanyan
- first_name: S. E.
full_name: de Mink, S. E.
last_name: de Mink
citation:
ama: 'Laplace E, Justham S, Renzo M, et al. Different to the core: The pre-supernova
structures of massive single and binary-stripped stars. Astronomy & Astrophysics.
2021;656. doi:10.1051/0004-6361/202140506'
apa: 'Laplace, E., Justham, S., Renzo, M., Götberg, Y. L. L., Farmer, R., Vartanyan,
D., & de Mink, S. E. (2021). Different to the core: The pre-supernova structures
of massive single and binary-stripped stars. Astronomy & Astrophysics.
EDP Sciences. https://doi.org/10.1051/0004-6361/202140506'
chicago: 'Laplace, E., S. Justham, M. Renzo, Ylva Louise Linsdotter Götberg, R.
Farmer, D. Vartanyan, and S. E. de Mink. “Different to the Core: The Pre-Supernova
Structures of Massive Single and Binary-Stripped Stars.” Astronomy & Astrophysics.
EDP Sciences, 2021. https://doi.org/10.1051/0004-6361/202140506.'
ieee: 'E. Laplace et al., “Different to the core: The pre-supernova structures
of massive single and binary-stripped stars,” Astronomy & Astrophysics,
vol. 656. EDP Sciences, 2021.'
ista: 'Laplace E, Justham S, Renzo M, Götberg YLL, Farmer R, Vartanyan D, de Mink
SE. 2021. Different to the core: The pre-supernova structures of massive single
and binary-stripped stars. Astronomy & Astrophysics. 656, A58.'
mla: 'Laplace, E., et al. “Different to the Core: The Pre-Supernova Structures of
Massive Single and Binary-Stripped Stars.” Astronomy & Astrophysics,
vol. 656, A58, EDP Sciences, 2021, doi:10.1051/0004-6361/202140506.'
short: E. Laplace, S. Justham, M. Renzo, Y.L.L. Götberg, R. Farmer, D. Vartanyan,
S.E. de Mink, Astronomy & Astrophysics 656 (2021).
date_created: 2023-08-03T10:11:09Z
date_published: 2021-12-02T00:00:00Z
date_updated: 2023-08-21T11:49:15Z
day: '02'
doi: 10.1051/0004-6361/202140506
external_id:
arxiv:
- '2102.05036'
intvolume: ' 656'
keyword:
- Space and Planetary Science
- Astronomy and Astrophysics
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1051/0004-6361/202140506
month: '12'
oa: 1
oa_version: Published Version
publication: Astronomy & Astrophysics
publication_identifier:
eissn:
- 1432-0746
issn:
- 0004-6361
publication_status: published
publisher: EDP Sciences
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Different to the core: The pre-supernova structures of massive single and
binary-stripped stars'
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 656
year: '2021'
...
---
_id: '10005'
abstract:
- lang: eng
text: We study systems of nonlinear partial differential equations of parabolic
type, in which the elliptic operator is replaced by the first-order divergence
operator acting on a flux function, which is related to the spatial gradient of
the unknown through an additional implicit equation. This setting, broad enough
in terms of applications, significantly expands the paradigm of nonlinear parabolic
problems. Formulating four conditions concerning the form of the implicit equation,
we first show that these conditions describe a maximal monotone p-coercive graph.
We then establish the global-in-time and large-data existence of a (weak) solution
and its uniqueness. To this end, we adopt and significantly generalize Minty’s
method of monotone mappings. A unified theory, containing several novel tools,
is developed in a way to be tractable from the point of view of numerical approximations.
acknowledgement: "M. Bulíček and J. Málek acknowledge the support of the project No.
18-12719S financed by the Czech\r\nScience foundation (GAČR). E. Maringová acknowledges
support from Charles University Research program \r\nUNCE/SCI/023, the grant SVV-2020-260583
by the Ministry of Education, Youth and Sports, Czech Republic\r\nand from the Austrian
Science Fund (FWF), grants P30000, W1245, and F65. M. Bulíček and J. Málek are\r\nmembers
of the Nečas Center for Mathematical Modelling.\r\n"
article_processing_charge: No
article_type: original
author:
- first_name: Miroslav
full_name: Bulíček, Miroslav
last_name: Bulíček
- first_name: Erika
full_name: Maringová, Erika
id: dbabca31-66eb-11eb-963a-fb9c22c880b4
last_name: Maringová
- first_name: Josef
full_name: Málek, Josef
last_name: Málek
citation:
ama: Bulíček M, Maringová E, Málek J. On nonlinear problems of parabolic type with
implicit constitutive equations involving flux. Mathematical Models and Methods
in Applied Sciences. 2021;31(09). doi:10.1142/S0218202521500457
apa: Bulíček, M., Maringová, E., & Málek, J. (2021). On nonlinear problems of
parabolic type with implicit constitutive equations involving flux. Mathematical
Models and Methods in Applied Sciences. World Scientific. https://doi.org/10.1142/S0218202521500457
chicago: Bulíček, Miroslav, Erika Maringová, and Josef Málek. “On Nonlinear Problems
of Parabolic Type with Implicit Constitutive Equations Involving Flux.” Mathematical
Models and Methods in Applied Sciences. World Scientific, 2021. https://doi.org/10.1142/S0218202521500457.
ieee: M. Bulíček, E. Maringová, and J. Málek, “On nonlinear problems of parabolic
type with implicit constitutive equations involving flux,” Mathematical Models
and Methods in Applied Sciences, vol. 31, no. 09. World Scientific, 2021.
ista: Bulíček M, Maringová E, Málek J. 2021. On nonlinear problems of parabolic
type with implicit constitutive equations involving flux. Mathematical Models
and Methods in Applied Sciences. 31(09).
mla: Bulíček, Miroslav, et al. “On Nonlinear Problems of Parabolic Type with Implicit
Constitutive Equations Involving Flux.” Mathematical Models and Methods in
Applied Sciences, vol. 31, no. 09, World Scientific, 2021, doi:10.1142/S0218202521500457.
short: M. Bulíček, E. Maringová, J. Málek, Mathematical Models and Methods in Applied
Sciences 31 (2021).
date_created: 2021-09-12T22:01:25Z
date_published: 2021-08-25T00:00:00Z
date_updated: 2023-09-04T11:43:45Z
day: '25'
department:
- _id: JuFi
doi: 10.1142/S0218202521500457
external_id:
arxiv:
- '2009.06917'
isi:
- '000722222900004'
intvolume: ' 31'
isi: 1
issue: '09'
keyword:
- Nonlinear parabolic systems
- implicit constitutive theory
- weak solutions
- existence
- uniqueness
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2009.06917
month: '08'
oa: 1
oa_version: Preprint
project:
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
grant_number: F6504
name: Taming Complexity in Partial Differential Systems
publication: Mathematical Models and Methods in Applied Sciences
publication_identifier:
eissn:
- 1793-6314
issn:
- 0218-2025
publication_status: published
publisher: World Scientific
quality_controlled: '1'
scopus_import: '1'
status: public
title: On nonlinear problems of parabolic type with implicit constitutive equations
involving flux
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 31
year: '2021'
...
---
_id: '10553'
abstract:
- lang: eng
text: The popularity of permissioned blockchain systems demands BFT SMR protocols
that are efficient under good network conditions (synchrony) and robust under
bad network conditions (asynchrony). The state-of-the-art partially synchronous
BFT SMR protocols provide optimal linear communication cost per decision under
synchrony and good leaders, but lose liveness under asynchrony. On the other hand,
the state-of-the-art asynchronous BFT SMR protocols are live even under asynchrony,
but always pay quadratic cost even under synchrony. In this paper, we propose
a BFT SMR protocol that achieves the best of both worlds -- optimal linear cost
per decision under good networks and leaders, optimal quadratic cost per decision
under bad networks, and remains always live.
article_processing_charge: No
author:
- first_name: Rati
full_name: Gelashvili, Rati
last_name: Gelashvili
- first_name: Eleftherios
full_name: Kokoris Kogias, Eleftherios
id: f5983044-d7ef-11ea-ac6d-fd1430a26d30
last_name: Kokoris Kogias
- first_name: Alexander
full_name: Spiegelman, Alexander
last_name: Spiegelman
- first_name: Zhuolun
full_name: Xiang, Zhuolun
last_name: Xiang
citation:
ama: 'Gelashvili R, Kokoris Kogias E, Spiegelman A, Xiang Z. Brief announcement:
Be prepared when network goes bad: An asynchronous view-change protocol. In: Proceedings
of the 2021 ACM Symposium on Principles of Distributed Computing. Association
for Computing Machinery; 2021:187-190. doi:10.1145/3465084.3467941'
apa: 'Gelashvili, R., Kokoris Kogias, E., Spiegelman, A., & Xiang, Z. (2021).
Brief announcement: Be prepared when network goes bad: An asynchronous view-change
protocol. In Proceedings of the 2021 ACM Symposium on Principles of Distributed
Computing (pp. 187–190). Virtual, Italy: Association for Computing Machinery.
https://doi.org/10.1145/3465084.3467941'
chicago: 'Gelashvili, Rati, Eleftherios Kokoris Kogias, Alexander Spiegelman, and
Zhuolun Xiang. “Brief Announcement: Be Prepared When Network Goes Bad: An Asynchronous
View-Change Protocol.” In Proceedings of the 2021 ACM Symposium on Principles
of Distributed Computing, 187–90. Association for Computing Machinery, 2021.
https://doi.org/10.1145/3465084.3467941.'
ieee: 'R. Gelashvili, E. Kokoris Kogias, A. Spiegelman, and Z. Xiang, “Brief announcement:
Be prepared when network goes bad: An asynchronous view-change protocol,” in Proceedings
of the 2021 ACM Symposium on Principles of Distributed Computing, Virtual,
Italy, 2021, pp. 187–190.'
ista: 'Gelashvili R, Kokoris Kogias E, Spiegelman A, Xiang Z. 2021. Brief announcement:
Be prepared when network goes bad: An asynchronous view-change protocol. Proceedings
of the 2021 ACM Symposium on Principles of Distributed Computing. PODC: Principles
of Distributed Computing, 187–190.'
mla: 'Gelashvili, Rati, et al. “Brief Announcement: Be Prepared When Network Goes
Bad: An Asynchronous View-Change Protocol.” Proceedings of the 2021 ACM Symposium
on Principles of Distributed Computing, Association for Computing Machinery,
2021, pp. 187–90, doi:10.1145/3465084.3467941.'
short: R. Gelashvili, E. Kokoris Kogias, A. Spiegelman, Z. Xiang, in:, Proceedings
of the 2021 ACM Symposium on Principles of Distributed Computing, Association
for Computing Machinery, 2021, pp. 187–190.
conference:
end_date: 2021-07-30
location: Virtual, Italy
name: 'PODC: Principles of Distributed Computing'
start_date: 2021-07-26
date_created: 2021-12-16T13:20:19Z
date_published: 2021-07-21T00:00:00Z
date_updated: 2023-09-04T11:42:10Z
day: '21'
department:
- _id: ElKo
doi: 10.1145/3465084.3467941
external_id:
arxiv:
- '2103.03181'
isi:
- '000744439800018'
isi: 1
keyword:
- optimal
- state machine replication
- fallback
- asynchrony
- byzantine faults
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2103.03181
month: '07'
oa: 1
oa_version: Preprint
page: 187-190
publication: Proceedings of the 2021 ACM Symposium on Principles of Distributed Computing
publication_identifier:
isbn:
- 9-781-4503-8548-0
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'Brief announcement: Be prepared when network goes bad: An asynchronous view-change
protocol'
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '9048'
abstract:
- lang: eng
text: The analogy between an equilibrium partition function and the return probability
in many-body unitary dynamics has led to the concept of dynamical quantum phase
transition (DQPT). DQPTs are defined by nonanalyticities in the return amplitude
and are present in many models. In some cases, DQPTs can be related to equilibrium
concepts, such as order parameters, yet their universal description is an open
question. In this Letter, we provide first steps toward a classification of DQPTs
by using a matrix product state description of unitary dynamics in the thermodynamic
limit. This allows us to distinguish the two limiting cases of “precession” and
“entanglement” DQPTs, which are illustrated using an analytical description in
the quantum Ising model. While precession DQPTs are characterized by a large entanglement
gap and are semiclassical in their nature, entanglement DQPTs occur near avoided
crossings in the entanglement spectrum and can be distinguished by a complex pattern
of nonlocal correlations. We demonstrate the existence of precession and entanglement
DQPTs beyond Ising models, discuss observables that can distinguish them, and
relate their interplay to complex DQPT phenomenology.
acknowledgement: "S. D. N. acknowledges funding from the Institute of Science and
Technology (IST) Austria and from the European Union’s Horizon 2020 Research and
Innovation Programme under the Marie Skłodowska-Curie Grant Agreement No. 754411.
A. M. and M. S. were supported by the European Research Council (ERC) under the
European Union’s Horizon 2020 Research and\r\nInnovation Programme (Grant Agreement
No. 850899)."
article_number: '040602'
article_processing_charge: Yes
article_type: original
author:
- first_name: Stefano
full_name: De Nicola, Stefano
id: 42832B76-F248-11E8-B48F-1D18A9856A87
last_name: De Nicola
orcid: 0000-0002-4842-6671
- first_name: Alexios
full_name: Michailidis, Alexios
id: 36EBAD38-F248-11E8-B48F-1D18A9856A87
last_name: Michailidis
orcid: 0000-0002-8443-1064
- first_name: Maksym
full_name: Serbyn, Maksym
id: 47809E7E-F248-11E8-B48F-1D18A9856A87
last_name: Serbyn
orcid: 0000-0002-2399-5827
citation:
ama: De Nicola S, Michailidis A, Serbyn M. Entanglement view of dynamical quantum
phase transitions. Physical Review Letters. 2021;126(4). doi:10.1103/physrevlett.126.040602
apa: De Nicola, S., Michailidis, A., & Serbyn, M. (2021). Entanglement view
of dynamical quantum phase transitions. Physical Review Letters. American
Physical Society. https://doi.org/10.1103/physrevlett.126.040602
chicago: De Nicola, Stefano, Alexios Michailidis, and Maksym Serbyn. “Entanglement
View of Dynamical Quantum Phase Transitions.” Physical Review Letters.
American Physical Society, 2021. https://doi.org/10.1103/physrevlett.126.040602.
ieee: S. De Nicola, A. Michailidis, and M. Serbyn, “Entanglement view of dynamical
quantum phase transitions,” Physical Review Letters, vol. 126, no. 4. American
Physical Society, 2021.
ista: De Nicola S, Michailidis A, Serbyn M. 2021. Entanglement view of dynamical
quantum phase transitions. Physical Review Letters. 126(4), 040602.
mla: De Nicola, Stefano, et al. “Entanglement View of Dynamical Quantum Phase Transitions.”
Physical Review Letters, vol. 126, no. 4, 040602, American Physical Society,
2021, doi:10.1103/physrevlett.126.040602.
short: S. De Nicola, A. Michailidis, M. Serbyn, Physical Review Letters 126 (2021).
date_created: 2021-02-01T09:20:00Z
date_published: 2021-01-29T00:00:00Z
date_updated: 2023-09-05T12:08:58Z
day: '29'
ddc:
- '530'
department:
- _id: MaSe
doi: 10.1103/physrevlett.126.040602
ec_funded: 1
external_id:
arxiv:
- '2008.04894'
isi:
- '000613148200001'
file:
- access_level: open_access
checksum: d9acbc502390ed7a97e631d23ae19ecd
content_type: application/pdf
creator: dernst
date_created: 2021-02-03T12:47:04Z
date_updated: 2021-02-03T12:47:04Z
file_id: '9074'
file_name: 2021_PhysicalRevLett_DeNicola.pdf
file_size: 398075
relation: main_file
success: 1
file_date_updated: 2021-02-03T12:47:04Z
has_accepted_license: '1'
intvolume: ' 126'
isi: 1
issue: '4'
keyword:
- General Physics and Astronomy
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: 23841C26-32DE-11EA-91FC-C7463DDC885E
call_identifier: H2020
grant_number: '850899'
name: 'Non-Ergodic Quantum Matter: Universality, Dynamics and Control'
publication: Physical Review Letters
publication_identifier:
eissn:
- 1079-7114
issn:
- 0031-9007
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
status: public
title: Entanglement view of dynamical quantum phase transitions
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 126
year: '2021'
...
---
_id: '9368'
abstract:
- lang: eng
text: The quality control system for messenger RNA (mRNA) is fundamental for cellular
activities in eukaryotes. To elucidate the molecular mechanism of 3'-Phosphoinositide-Dependent
Protein Kinase1 (PDK1), a master regulator that is essential throughout eukaryotic
growth and development, we employed a forward genetic approach to screen for suppressors
of the loss-of-function T-DNA insertion double mutant pdk1.1 pdk1.2 in Arabidopsis
thaliana. Notably, the severe growth attenuation of pdk1.1 pdk1.2 was rescued
by sop21 (suppressor of pdk1.1 pdk1.2), which harbours a loss-of-function mutation
in PELOTA1 (PEL1). PEL1 is a homologue of mammalian PELOTA and yeast (Saccharomyces
cerevisiae) DOM34p, which each form a heterodimeric complex with the GTPase HBS1
(HSP70 SUBFAMILY B SUPPRESSOR1, also called SUPERKILLER PROTEIN7, SKI7), a protein
that is responsible for ribosomal rescue and thereby assures the quality and fidelity
of mRNA molecules during translation. Genetic analysis further revealed that a
dysfunctional PEL1-HBS1 complex failed to degrade the T-DNA-disrupted PDK1 transcripts,
which were truncated but functional, and thus rescued the growth and developmental
defects of pdk1.1 pdk1.2. Our studies demonstrated the functionality of a homologous
PELOTA-HBS1 complex and identified its essential regulatory role in plants, providing
insights into the mechanism of mRNA quality control.
acknowledgement: 'We gratefully acknowledge the Arabidopsis Biological Resource Centre
(ABRC) for providing T-DNA insertional mutants, and Prof. Remko Offringa for sharing
published seeds. We thank Yuchuan Liu (Shanghai OE Biotech Co., Ltd) for help with
proteomics data analysis, Xixi Zhang (IST Austria) for providing the pDONR-P4P1r-mCherry
plasmid, and Yao Xiao (Technical University of Munich), Alexander Johnson (IST Austria)
and Hana Semeradova (IST Austria) for helpful discussions. The study was supported
by National Natural Science Foundation of China (NSFC, 31721001, 91954206, to H.-W.
X.), “Ten-Thousand Talent Program” (to H.-W. X.) and Collaborative Innovation Center
of Crop Stress Biology, Henan Province, and Austrian Science Fund (FWF): I 3630-B25
(to J. F.). S.T. was funded by a European Molecular Biology Organization (EMBO)
long-term postdoctoral fellowship (ALTF 723-2015).'
article_processing_charge: No
article_type: original
author:
- first_name: W
full_name: Kong, W
last_name: Kong
- first_name: Shutang
full_name: Tan, Shutang
id: 2DE75584-F248-11E8-B48F-1D18A9856A87
last_name: Tan
orcid: 0000-0002-0471-8285
- first_name: Q
full_name: Zhao, Q
last_name: Zhao
- first_name: DL
full_name: Lin, DL
last_name: Lin
- first_name: ZH
full_name: Xu, ZH
last_name: Xu
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: HW
full_name: Xue, HW
last_name: Xue
citation:
ama: Kong W, Tan S, Zhao Q, et al. mRNA surveillance complex PELOTA-HBS1 eegulates
phosphoinositide-sependent protein kinase1 and plant growth. Plant Physiology.
2021;186(4):2003-2020. doi:10.1093/plphys/kiab199
apa: Kong, W., Tan, S., Zhao, Q., Lin, D., Xu, Z., Friml, J., & Xue, H. (2021).
mRNA surveillance complex PELOTA-HBS1 eegulates phosphoinositide-sependent protein
kinase1 and plant growth. Plant Physiology. American Society of Plant Biologists.
https://doi.org/10.1093/plphys/kiab199
chicago: Kong, W, Shutang Tan, Q Zhao, DL Lin, ZH Xu, Jiří Friml, and HW Xue. “MRNA
Surveillance Complex PELOTA-HBS1 Eegulates Phosphoinositide-Sependent Protein
Kinase1 and Plant Growth.” Plant Physiology. American Society of Plant
Biologists, 2021. https://doi.org/10.1093/plphys/kiab199.
ieee: W. Kong et al., “mRNA surveillance complex PELOTA-HBS1 eegulates phosphoinositide-sependent
protein kinase1 and plant growth,” Plant Physiology, vol. 186, no. 4. American
Society of Plant Biologists, pp. 2003–2020, 2021.
ista: Kong W, Tan S, Zhao Q, Lin D, Xu Z, Friml J, Xue H. 2021. mRNA surveillance
complex PELOTA-HBS1 eegulates phosphoinositide-sependent protein kinase1 and plant
growth. Plant Physiology. 186(4), 2003–2020.
mla: Kong, W., et al. “MRNA Surveillance Complex PELOTA-HBS1 Eegulates Phosphoinositide-Sependent
Protein Kinase1 and Plant Growth.” Plant Physiology, vol. 186, no. 4, American
Society of Plant Biologists, 2021, pp. 2003–20, doi:10.1093/plphys/kiab199.
short: W. Kong, S. Tan, Q. Zhao, D. Lin, Z. Xu, J. Friml, H. Xue, Plant Physiology
186 (2021) 2003–2020.
date_created: 2021-05-03T13:28:20Z
date_published: 2021-04-30T00:00:00Z
date_updated: 2023-09-05T12:20:27Z
day: '30'
department:
- _id: JiFr
doi: 10.1093/plphys/kiab199
external_id:
isi:
- '000703922000025'
pmid:
- '33930167'
intvolume: ' 186'
isi: 1
issue: '4'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1093/plphys/kiab199
month: '04'
oa: 1
oa_version: Published Version
page: 2003-2020
pmid: 1
project:
- _id: 256FEF10-B435-11E9-9278-68D0E5697425
grant_number: 723-2015
name: Long Term Fellowship
- _id: 26538374-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I03630
name: Molecular mechanisms of endocytic cargo recognition in plants
publication: Plant Physiology
publication_identifier:
eissn:
- 1532-2548
issn:
- 0032-0889
publication_status: published
publisher: American Society of Plant Biologists
quality_controlled: '1'
status: public
title: mRNA surveillance complex PELOTA-HBS1 eegulates phosphoinositide-sependent
protein kinase1 and plant growth
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 186
year: '2021'
...
---
_id: '10860'
abstract:
- lang: eng
text: A tight frame is the orthogonal projection of some orthonormal basis of Rn
onto Rk. We show that a set of vectors is a tight frame if and only if the set
of all cross products of these vectors is a tight frame. We reformulate a range
of problems on the volume of projections (or sections) of regular polytopes in
terms of tight frames and write a first-order necessary condition for local extrema
of these problems. As applications, we prove new results for the problem of maximization
of the volume of zonotopes.
acknowledgement: The author was supported by the Swiss National Science Foundation
grant 200021_179133. The author acknowledges the financial support from the Ministry
of Education and Science of the Russian Federation in the framework of MegaGrant
no. 075-15-2019-1926.
article_processing_charge: No
article_type: original
author:
- first_name: Grigory
full_name: Ivanov, Grigory
id: 87744F66-5C6F-11EA-AFE0-D16B3DDC885E
last_name: Ivanov
citation:
ama: Ivanov G. Tight frames and related geometric problems. Canadian Mathematical
Bulletin. 2021;64(4):942-963. doi:10.4153/s000843952000096x
apa: Ivanov, G. (2021). Tight frames and related geometric problems. Canadian
Mathematical Bulletin. Canadian Mathematical Society. https://doi.org/10.4153/s000843952000096x
chicago: Ivanov, Grigory. “Tight Frames and Related Geometric Problems.” Canadian
Mathematical Bulletin. Canadian Mathematical Society, 2021. https://doi.org/10.4153/s000843952000096x.
ieee: G. Ivanov, “Tight frames and related geometric problems,” Canadian Mathematical
Bulletin, vol. 64, no. 4. Canadian Mathematical Society, pp. 942–963, 2021.
ista: Ivanov G. 2021. Tight frames and related geometric problems. Canadian Mathematical
Bulletin. 64(4), 942–963.
mla: Ivanov, Grigory. “Tight Frames and Related Geometric Problems.” Canadian
Mathematical Bulletin, vol. 64, no. 4, Canadian Mathematical Society, 2021,
pp. 942–63, doi:10.4153/s000843952000096x.
short: G. Ivanov, Canadian Mathematical Bulletin 64 (2021) 942–963.
date_created: 2022-03-18T09:55:59Z
date_published: 2021-12-18T00:00:00Z
date_updated: 2023-09-05T12:43:09Z
day: '18'
department:
- _id: UlWa
doi: 10.4153/s000843952000096x
external_id:
arxiv:
- '1804.10055'
isi:
- '000730165300021'
intvolume: ' 64'
isi: 1
issue: '4'
keyword:
- General Mathematics
- Tight frame
- Grassmannian
- zonotope
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1804.10055
month: '12'
oa: 1
oa_version: Preprint
page: 942-963
publication: Canadian Mathematical Bulletin
publication_identifier:
eissn:
- 1496-4287
issn:
- 0008-4395
publication_status: published
publisher: Canadian Mathematical Society
quality_controlled: '1'
scopus_import: '1'
status: public
title: Tight frames and related geometric problems
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 64
year: '2021'
...
---
_id: '9290'
abstract:
- lang: eng
text: Polar subcellular localization of the PIN exporters of the phytohormone auxin
is a key determinant of directional, intercellular auxin transport and thus a
central topic of both plant cell and developmental biology. Arabidopsis mutants
lacking PID, a kinase that phosphorylates PINs, or the MAB4/MEL proteins of unknown
molecular function display PIN polarity defects and phenocopy pin mutants, but
mechanistic insights into how these factors convey PIN polarity are missing. Here,
by combining protein biochemistry with quantitative live-cell imaging, we demonstrate
that PINs, MAB4/MELs, and AGC kinases interact in the same complex at the plasma
membrane. MAB4/MELs are recruited to the plasma membrane by the PINs and in concert
with the AGC kinases maintain PIN polarity through limiting lateral diffusion-based
escape of PINs from the polar domain. The PIN-MAB4/MEL-PID protein complex has
self-reinforcing properties thanks to positive feedback between AGC kinase-mediated
PIN phosphorylation and MAB4/MEL recruitment. We thus uncover the molecular mechanism
by which AGC kinases and MAB4/MEL proteins regulate PIN localization and plant
development.
acknowledged_ssus:
- _id: Bio
acknowledgement: We acknowledge Ben Scheres, Christian Luschnig, and Claus Schwechheimer
for sharing published material. We thank Monika Hrtyan and Dorota Jaworska at IST
Austria and Gerda Lamers and Ward de Winter at IBL Netherlands for technical assistance;
Corinna Hartinger, Jakub Hajný, Lesia Rodriguez, Mingyue Li, and Lindy Abas for
experimental support; and the Bioimaging Facility at IST Austria and the Bioimaging
Core at VIB for imaging support. We are grateful to Christian Luschnig, Lindy Abas,
and Roman Pleskot for valuable discussions. We also acknowledge the EMBO for supporting
M.G. with a long-term fellowship ( ALTF 1005-2019 ) during the finalization and
revision of this manuscript in the laboratory of B.D.R., and we thank R. Pierik
for allowing K.V.G. to work on this manuscript during a postdoc in his laboratory
at Utrecht University. This work was supported by grants from the European Research
Council under the European Union’s Seventh Framework Programme (ERC grant agreements
742985 to J.F., 714055 to B.D.R., and 803048 to M.F.), the Austrian Science Fund
(FWF; I 3630-B25 to J.F.), Chemical Sciences (partly) financed by the Dutch Research
Council (NWO-CW TOP 700.58.301 to R.O.), the Dutch Research Council (NWO-VICI 865.17.002
to R. Pierik), Grants-in-Aid from the Ministry of Education, Culture, Sports, Science
and Technology, Japan (KAKENHI grant 17K17595 to S.N.), the Ministry of Education,
Youth and Sports of the Czech Republic (MŠMT project NPUI-LO1417 ), and a China
Scholarship Council (to X.W.).
article_processing_charge: No
article_type: original
author:
- first_name: Matous
full_name: Glanc, Matous
id: 1AE1EA24-02D0-11E9-9BAA-DAF4881429F2
last_name: Glanc
orcid: 0000-0003-0619-7783
- first_name: K
full_name: Van Gelderen, K
last_name: Van Gelderen
- first_name: Lukas
full_name: Hörmayer, Lukas
id: 2EEE7A2A-F248-11E8-B48F-1D18A9856A87
last_name: Hörmayer
orcid: 0000-0001-8295-2926
- first_name: Shutang
full_name: Tan, Shutang
id: 2DE75584-F248-11E8-B48F-1D18A9856A87
last_name: Tan
orcid: 0000-0002-0471-8285
- first_name: S
full_name: Naramoto, S
last_name: Naramoto
- first_name: Xixi
full_name: Zhang, Xixi
id: 61A66458-47E9-11EA-85BA-8AEAAF14E49A
last_name: Zhang
orcid: 0000-0001-7048-4627
- first_name: David
full_name: Domjan, David
id: C684CD7A-257E-11EA-9B6F-D8588B4F947F
last_name: Domjan
orcid: 0000-0003-2267-106X
- first_name: L
full_name: Vcelarova, L
last_name: Vcelarova
- first_name: Robert
full_name: Hauschild, Robert
id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87
last_name: Hauschild
orcid: 0000-0001-9843-3522
- first_name: Alexander J
full_name: Johnson, Alexander J
id: 46A62C3A-F248-11E8-B48F-1D18A9856A87
last_name: Johnson
orcid: 0000-0002-2739-8843
- first_name: E
full_name: de Koning, E
last_name: de Koning
- first_name: M
full_name: van Dop, M
last_name: van Dop
- first_name: E
full_name: Rademacher, E
last_name: Rademacher
- first_name: S
full_name: Janson, S
last_name: Janson
- first_name: X
full_name: Wei, X
last_name: Wei
- first_name: Gergely
full_name: Molnar, Gergely
id: 34F1AF46-F248-11E8-B48F-1D18A9856A87
last_name: Molnar
- first_name: Matyas
full_name: Fendrych, Matyas
id: 43905548-F248-11E8-B48F-1D18A9856A87
last_name: Fendrych
orcid: 0000-0002-9767-8699
- first_name: B
full_name: De Rybel, B
last_name: De Rybel
- first_name: R
full_name: Offringa, R
last_name: Offringa
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
citation:
ama: Glanc M, Van Gelderen K, Hörmayer L, et al. AGC kinases and MAB4/MEL proteins
maintain PIN polarity by limiting lateral diffusion in plant cells. Current
Biology. 2021;31(9):1918-1930. doi:10.1016/j.cub.2021.02.028
apa: Glanc, M., Van Gelderen, K., Hörmayer, L., Tan, S., Naramoto, S., Zhang, X.,
… Friml, J. (2021). AGC kinases and MAB4/MEL proteins maintain PIN polarity by
limiting lateral diffusion in plant cells. Current Biology. Elsevier. https://doi.org/10.1016/j.cub.2021.02.028
chicago: Glanc, Matous, K Van Gelderen, Lukas Hörmayer, Shutang Tan, S Naramoto,
Xixi Zhang, David Domjan, et al. “AGC Kinases and MAB4/MEL Proteins Maintain PIN
Polarity by Limiting Lateral Diffusion in Plant Cells.” Current Biology.
Elsevier, 2021. https://doi.org/10.1016/j.cub.2021.02.028.
ieee: M. Glanc et al., “AGC kinases and MAB4/MEL proteins maintain PIN polarity
by limiting lateral diffusion in plant cells,” Current Biology, vol. 31,
no. 9. Elsevier, pp. 1918–1930, 2021.
ista: Glanc M, Van Gelderen K, Hörmayer L, Tan S, Naramoto S, Zhang X, Domjan D,
Vcelarova L, Hauschild R, Johnson AJ, de Koning E, van Dop M, Rademacher E, Janson
S, Wei X, Molnar G, Fendrych M, De Rybel B, Offringa R, Friml J. 2021. AGC kinases
and MAB4/MEL proteins maintain PIN polarity by limiting lateral diffusion in plant
cells. Current Biology. 31(9), 1918–1930.
mla: Glanc, Matous, et al. “AGC Kinases and MAB4/MEL Proteins Maintain PIN Polarity
by Limiting Lateral Diffusion in Plant Cells.” Current Biology, vol. 31,
no. 9, Elsevier, 2021, pp. 1918–30, doi:10.1016/j.cub.2021.02.028.
short: M. Glanc, K. Van Gelderen, L. Hörmayer, S. Tan, S. Naramoto, X. Zhang, D.
Domjan, L. Vcelarova, R. Hauschild, A.J. Johnson, E. de Koning, M. van Dop, E.
Rademacher, S. Janson, X. Wei, G. Molnar, M. Fendrych, B. De Rybel, R. Offringa,
J. Friml, Current Biology 31 (2021) 1918–1930.
date_created: 2021-03-26T12:09:33Z
date_published: 2021-03-10T00:00:00Z
date_updated: 2023-09-05T13:03:34Z
day: '10'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1016/j.cub.2021.02.028
ec_funded: 1
external_id:
isi:
- '000653077800004'
pmid:
- '33705718'
file:
- access_level: open_access
checksum: b1723040ecfd8c81194185472eb62546
content_type: application/pdf
creator: dernst
date_created: 2021-04-01T10:53:42Z
date_updated: 2021-04-01T10:53:42Z
file_id: '9303'
file_name: 2021_CurrentBiology_Glanc.pdf
file_size: 4324371
relation: main_file
success: 1
file_date_updated: 2021-04-01T10:53:42Z
has_accepted_license: '1'
intvolume: ' 31'
isi: 1
issue: '9'
language:
- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 1918-1930
pmid: 1
project:
- _id: 261099A6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '742985'
name: Tracing Evolution of Auxin Transport and Polarity in Plants
- _id: 26538374-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: I03630
name: Molecular mechanisms of endocytic cargo recognition in plants
publication: Current Biology
publication_identifier:
eissn:
- 1879-0445
issn:
- 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: AGC kinases and MAB4/MEL proteins maintain PIN polarity by limiting lateral
diffusion in plant cells
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 31
year: '2021'
...
---
_id: '8824'
abstract:
- lang: eng
text: Plants are able to orient their growth according to gravity, which ultimately
controls both shoot and root architecture.1 Gravitropism is a dynamic process
whereby gravistimulation induces the asymmetric distribution of the plant hormone
auxin, leading to asymmetric growth, organ bending, and subsequent reset of auxin
distribution back to the original pre-gravistimulation situation.1, 2, 3 Differential
auxin accumulation during the gravitropic response depends on the activity of
polarly localized PIN-FORMED (PIN) auxin-efflux carriers.1, 2, 3, 4 In particular,
the timing of this dynamic response is regulated by PIN2,5,6 but the underlying
molecular mechanisms are poorly understood. Here, we show that MEMBRANE ASSOCIATED
KINASE REGULATOR2 (MAKR2) controls the pace of the root gravitropic response.
We found that MAKR2 is required for the PIN2 asymmetry during gravitropism by
acting as a negative regulator of the cell-surface signaling mediated by the receptor-like
kinase TRANSMEMBRANE KINASE1 (TMK1).2,7, 8, 9, 10 Furthermore, we show that
the MAKR2 inhibitory effect on TMK1 signaling is antagonized by auxin itself,
which triggers rapid MAKR2 membrane dissociation in a TMK1-dependent manner. Our
findings suggest that the timing of the root gravitropic response is orchestrated
by the reversible inhibition of the TMK1 signaling pathway at the cell surface.
acknowledgement: "We thank the SiCE group for discussions and comments; S. Yalovsky,
B. Scheres, and the NASC/ABRC collection for providing transgenic Arabidopsis lines
and plasmids; L. Kalmbach and M. Barberon for the gift of pLOK180_pFR7m34GW; A.
Lacroix, J. Berger, and P. Bolland for plant care; and M. Fendrych for help with
microfluidics in the J.F. lab. We acknowledge\r\nthe contribution of the SFR Biosciences
(UMS3444/CNRS, US8/Inser m, ENS de Lyon, UCBL) facilities: C. Lionet, E. Chatre,
and J. Brocard at LBIPLATIM-MICROSCOPY for assistance with imaging, and V. GuegenChaignon
and A. Page at the Protein Science Facility (PSF) for assistance with protein purification
and mass spectrometry. Y.J. was funded by ERC\r\ngrant 3363360-APPL under FP/2007–2013.
Y.J. and Z.L.N. were funded by an ANR- and NSF-supported ERA-CAPS project (SICOPID:
ANR-17-CAPS0003-01/NSF PGRP IOS-1841917). A.I.C.-D. is funded by an ERC consolidator
grant (ERC-2015-CoG–683163) and BIO2016-78955 grant from the Spanish Ministry of
Economy and Competitiveness. Exchanges between the Y.J. and T.B. laboratories were
funded by Tournesol grant 35656NB. B.K.M. was\r\nfunded by the Omics@vib Marie Curie
COFUND and Research Foundation Flanders for a postdoctoral fellowship."
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: MM
full_name: Marquès-Bueno, MM
last_name: Marquès-Bueno
- first_name: L
full_name: Armengot, L
last_name: Armengot
- first_name: LC
full_name: Noack, LC
last_name: Noack
- first_name: J
full_name: Bareille, J
last_name: Bareille
- first_name: Lesia
full_name: Rodriguez Solovey, Lesia
id: 3922B506-F248-11E8-B48F-1D18A9856A87
last_name: Rodriguez Solovey
orcid: 0000-0002-7244-7237
- first_name: MP
full_name: Platre, MP
last_name: Platre
- first_name: V
full_name: Bayle, V
last_name: Bayle
- first_name: M
full_name: Liu, M
last_name: Liu
- first_name: D
full_name: Opdenacker, D
last_name: Opdenacker
- first_name: S
full_name: Vanneste, S
last_name: Vanneste
- first_name: BK
full_name: Möller, BK
last_name: Möller
- first_name: ZL
full_name: Nimchuk, ZL
last_name: Nimchuk
- first_name: T
full_name: Beeckman, T
last_name: Beeckman
- first_name: AI
full_name: Caño-Delgado, AI
last_name: Caño-Delgado
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Y
full_name: Jaillais, Y
last_name: Jaillais
citation:
ama: Marquès-Bueno M, Armengot L, Noack L, et al. Auxin-regulated reversible inhibition
of TMK1 signaling by MAKR2 modulates the dynamics of root gravitropism. Current
Biology. 2021;31(1). doi:10.1016/j.cub.2020.10.011
apa: Marquès-Bueno, M., Armengot, L., Noack, L., Bareille, J., Rodriguez Solovey,
L., Platre, M., … Jaillais, Y. (2021). Auxin-regulated reversible inhibition of
TMK1 signaling by MAKR2 modulates the dynamics of root gravitropism. Current
Biology. Elsevier. https://doi.org/10.1016/j.cub.2020.10.011
chicago: Marquès-Bueno, MM, L Armengot, LC Noack, J Bareille, Lesia Rodriguez Solovey,
MP Platre, V Bayle, et al. “Auxin-Regulated Reversible Inhibition of TMK1 Signaling
by MAKR2 Modulates the Dynamics of Root Gravitropism.” Current Biology.
Elsevier, 2021. https://doi.org/10.1016/j.cub.2020.10.011.
ieee: M. Marquès-Bueno et al., “Auxin-regulated reversible inhibition of
TMK1 signaling by MAKR2 modulates the dynamics of root gravitropism,” Current
Biology, vol. 31, no. 1. Elsevier, 2021.
ista: Marquès-Bueno M, Armengot L, Noack L, Bareille J, Rodriguez Solovey L, Platre
M, Bayle V, Liu M, Opdenacker D, Vanneste S, Möller B, Nimchuk Z, Beeckman T,
Caño-Delgado A, Friml J, Jaillais Y. 2021. Auxin-regulated reversible inhibition
of TMK1 signaling by MAKR2 modulates the dynamics of root gravitropism. Current
Biology. 31(1).
mla: Marquès-Bueno, MM, et al. “Auxin-Regulated Reversible Inhibition of TMK1 Signaling
by MAKR2 Modulates the Dynamics of Root Gravitropism.” Current Biology,
vol. 31, no. 1, Elsevier, 2021, doi:10.1016/j.cub.2020.10.011.
short: M. Marquès-Bueno, L. Armengot, L. Noack, J. Bareille, L. Rodriguez Solovey,
M. Platre, V. Bayle, M. Liu, D. Opdenacker, S. Vanneste, B. Möller, Z. Nimchuk,
T. Beeckman, A. Caño-Delgado, J. Friml, Y. Jaillais, Current Biology 31 (2021).
date_created: 2020-12-01T13:39:46Z
date_published: 2021-01-11T00:00:00Z
date_updated: 2023-09-05T13:03:15Z
day: '11'
ddc:
- '570'
department:
- _id: JiFr
doi: 10.1016/j.cub.2020.10.011
external_id:
isi:
- '000614361000039'
pmid:
- '33157019'
file:
- access_level: open_access
checksum: 30b3393d841fb2b1e2b22fb42b5c8fff
content_type: application/pdf
creator: dernst
date_created: 2021-02-04T11:37:50Z
date_updated: 2021-02-04T11:37:50Z
file_id: '9090'
file_name: 2021_CurrentBiology_MarquesBueno.pdf
file_size: 3458646
relation: main_file
success: 1
file_date_updated: 2021-02-04T11:37:50Z
has_accepted_license: '1'
intvolume: ' 31'
isi: 1
issue: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
pmid: 1
publication: Current Biology
publication_identifier:
eissn:
- 1879-0445
issn:
- 0960-9822
publication_status: published
publisher: Elsevier
quality_controlled: '1'
status: public
title: Auxin-regulated reversible inhibition of TMK1 signaling by MAKR2 modulates
the dynamics of root gravitropism
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 31
year: '2021'
...
---
_id: '9301'
abstract:
- lang: eng
text: Electrodepositing insulating lithium peroxide (Li2O2) is the key process during
discharge of aprotic Li–O2 batteries and determines rate, capacity, and reversibility.
Current understanding states that the partition between surface adsorbed and dissolved
lithium superoxide governs whether Li2O2 grows as a conformal surface film or
larger particles, leading to low or high capacities, respectively. However, better
understanding governing factors for Li2O2 packing density and capacity requires
structural sensitive in situ metrologies. Here, we establish in situ small- and
wide-angle X-ray scattering (SAXS/WAXS) as a suitable method to record the Li2O2
phase evolution with atomic to submicrometer resolution during cycling a custom-built
in situ Li–O2 cell. Combined with sophisticated data analysis, SAXS allows retrieving
rich quantitative structural information from complex multiphase systems. Surprisingly,
we find that features are absent that would point at a Li2O2 surface film formed
via two consecutive electron transfers, even in poorly solvating electrolytes
thought to be prototypical for surface growth. All scattering data can be modeled
by stacks of thin Li2O2 platelets potentially forming large toroidal particles.
Li2O2 solution growth is further justified by rotating ring-disk electrode measurements
and electron microscopy. Higher discharge overpotentials lead to smaller Li2O2
particles, but there is no transition to an electronically passivating, conformal
Li2O2 coating. Hence, mass transport of reactive species rather than electronic
transport through a Li2O2 film limits the discharge capacity. Provided that species
mobilities and carbon surface areas are high, this allows for high discharge capacities
even in weakly solvating electrolytes. The currently accepted Li–O2 reaction mechanism
ought to be reconsidered.
acknowledged_ssus:
- _id: EM-Fac
acknowledgement: S.A.F. and C.P. are indebted to the European Research Council under
the European Union's Horizon 2020 research and innovation program (Grant Agreement
No. 636069), the Austrian Federal Ministry of Science, Research and Economy, and
the Austrian Research Promotion Agency (Grant No. 845364). We acknowledge A. Zankel
and H. Schroettner for support with SEM measurements. C.P. thanks N. Kostoglou,
C. Koczwara, M. Hartmann, and M. Burian for discussions on gas sorption analysis,
C++ programming, Monte Carlo modeling, and in situ SAXS experiments, respectively.
We thank S. Stadlbauer for help with Karl Fischer titration, R. Riccò for gas sorption
measurements, and acknowledge Graz University of Technology for support through
the Lead Project LP-03. Likewise, the use of SOMAPP Lab, a core facility supported
by the Austrian Federal Ministry of Education, Science and Research, the Graz University
of Technology, the University of Graz, and Anton Paar GmbH is acknowledged. S.A.F.
is indebted to Institute of Science and Technology Austria (IST Austria) for support.
This research was supported by the Scientific Service Units of IST Austria through
resources provided by the Electron Microscopy Facility.
article_number: e2021893118
article_processing_charge: No
article_type: original
author:
- first_name: Christian
full_name: Prehal, Christian
last_name: Prehal
- first_name: Aleksej
full_name: Samojlov, Aleksej
last_name: Samojlov
- first_name: Manfred
full_name: Nachtnebel, Manfred
last_name: Nachtnebel
- first_name: Ludek
full_name: Lovicar, Ludek
id: 36DB3A20-F248-11E8-B48F-1D18A9856A87
last_name: Lovicar
orcid: 0000-0001-6206-4200
- first_name: Manfred
full_name: Kriechbaum, Manfred
last_name: Kriechbaum
- first_name: Heinz
full_name: Amenitsch, Heinz
last_name: Amenitsch
- first_name: Stefan Alexander
full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
citation:
ama: Prehal C, Samojlov A, Nachtnebel M, et al. In situ small-angle X-ray scattering
reveals solution phase discharge of Li–O2 batteries with weakly solvating electrolytes.
Proceedings of the National Academy of Sciences. 2021;118(14). doi:10.1073/pnas.2021893118
apa: Prehal, C., Samojlov, A., Nachtnebel, M., Lovicar, L., Kriechbaum, M., Amenitsch,
H., & Freunberger, S. A. (2021). In situ small-angle X-ray scattering reveals
solution phase discharge of Li–O2 batteries with weakly solvating electrolytes.
Proceedings of the National Academy of Sciences. National Academy of Sciences.
https://doi.org/10.1073/pnas.2021893118
chicago: Prehal, Christian, Aleksej Samojlov, Manfred Nachtnebel, Ludek Lovicar,
Manfred Kriechbaum, Heinz Amenitsch, and Stefan Alexander Freunberger. “In Situ
Small-Angle X-Ray Scattering Reveals Solution Phase Discharge of Li–O2 Batteries
with Weakly Solvating Electrolytes.” Proceedings of the National Academy of
Sciences. National Academy of Sciences, 2021. https://doi.org/10.1073/pnas.2021893118.
ieee: C. Prehal et al., “In situ small-angle X-ray scattering reveals solution
phase discharge of Li–O2 batteries with weakly solvating electrolytes,” Proceedings
of the National Academy of Sciences, vol. 118, no. 14. National Academy of
Sciences, 2021.
ista: Prehal C, Samojlov A, Nachtnebel M, Lovicar L, Kriechbaum M, Amenitsch H,
Freunberger SA. 2021. In situ small-angle X-ray scattering reveals solution phase
discharge of Li–O2 batteries with weakly solvating electrolytes. Proceedings of
the National Academy of Sciences. 118(14), e2021893118.
mla: Prehal, Christian, et al. “In Situ Small-Angle X-Ray Scattering Reveals Solution
Phase Discharge of Li–O2 Batteries with Weakly Solvating Electrolytes.” Proceedings
of the National Academy of Sciences, vol. 118, no. 14, e2021893118, National
Academy of Sciences, 2021, doi:10.1073/pnas.2021893118.
short: C. Prehal, A. Samojlov, M. Nachtnebel, L. Lovicar, M. Kriechbaum, H. Amenitsch,
S.A. Freunberger, Proceedings of the National Academy of Sciences 118 (2021).
date_created: 2021-03-31T07:00:01Z
date_published: 2021-04-06T00:00:00Z
date_updated: 2023-09-05T13:27:18Z
day: '06'
department:
- _id: StFr
- _id: EM-Fac
doi: 10.1073/pnas.2021893118
external_id:
isi:
- '000637398300050'
intvolume: ' 118'
isi: 1
issue: '14'
keyword:
- small-angle X-ray scattering
- oxygen reduction
- disproportionation
- Li-air battery
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.26434/chemrxiv.11447775
month: '04'
oa: 1
oa_version: Preprint
publication: Proceedings of the National Academy of Sciences
publication_identifier:
eissn:
- 1091-6490
issn:
- 0027-8424
publication_status: published
publisher: National Academy of Sciences
quality_controlled: '1'
status: public
title: In situ small-angle X-ray scattering reveals solution phase discharge of Li–O2
batteries with weakly solvating electrolytes
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 118
year: '2021'
...
---
_id: '9447'
abstract:
- lang: eng
text: 'Lithium bis(trifluoromethylsulfonyl)imide (LiTFSI) based water-in-salt electrolytes
(WiSEs) has recently emerged as a new promising class of electrolytes, primarily
owing to their wide electrochemical stability windows (~3–4 V), that by far exceed
the thermodynamic stability window of water (1.23 V). Upon increasing the salt
concentration towards superconcentration the onset of the oxygen evolution reaction
(OER) shifts more significantly than the hydrogen evolution reaction (HER) does.
The OER shift has been explained by the accumulation of hydrophobic anions blocking
water access to the electrode surface, hence by double layer theory. Here we demonstrate
that the processes during oxidation are much more complex, involving OER, carbon
and salt decomposition by OER intermediates, and salt precipitation upon local
oversaturation. The positive shift in the onset potential of oxidation currents
was elucidated by combining several advanced analysis techniques: rotating ring-disk
electrode voltammetry, online electrochemical mass spectrometry, and X-ray photoelectron
spectroscopy, using both dilute and superconcentrated electrolytes. The results
demonstrate the importance of reactive OER intermediates and surface films for
electrolyte and electrode stability and motivate further studies of the nature
of the electrode.'
article_number: '050550'
article_processing_charge: No
author:
- first_name: Marion
full_name: Maffre, Marion
last_name: Maffre
- first_name: Roza
full_name: Bouchal, Roza
last_name: Bouchal
- first_name: Stefan Alexander
full_name: Freunberger, Stefan Alexander
id: A8CA28E6-CE23-11E9-AD2D-EC27E6697425
last_name: Freunberger
orcid: 0000-0003-2902-5319
- first_name: Niklas
full_name: Lindahl, Niklas
last_name: Lindahl
- first_name: Patrik
full_name: Johansson, Patrik
last_name: Johansson
- first_name: Frédéric
full_name: Favier, Frédéric
last_name: Favier
- first_name: Olivier
full_name: Fontaine, Olivier
last_name: Fontaine
- first_name: Daniel
full_name: Bélanger, Daniel
last_name: Bélanger
citation:
ama: Maffre M, Bouchal R, Freunberger SA, et al. Investigation of electrochemical
and chemical processes occurring at positive potentials in “Water-in-Salt” electrolytes.
Journal of The Electrochemical Society. 2021;168(5). doi:10.1149/1945-7111/ac0300
apa: Maffre, M., Bouchal, R., Freunberger, S. A., Lindahl, N., Johansson, P., Favier,
F., … Bélanger, D. (2021). Investigation of electrochemical and chemical processes
occurring at positive potentials in “Water-in-Salt” electrolytes. Journal of
The Electrochemical Society. IOP Publishing. https://doi.org/10.1149/1945-7111/ac0300
chicago: Maffre, Marion, Roza Bouchal, Stefan Alexander Freunberger, Niklas Lindahl,
Patrik Johansson, Frédéric Favier, Olivier Fontaine, and Daniel Bélanger. “Investigation
of Electrochemical and Chemical Processes Occurring at Positive Potentials in
‘Water-in-Salt’ Electrolytes.” Journal of The Electrochemical Society.
IOP Publishing, 2021. https://doi.org/10.1149/1945-7111/ac0300.
ieee: M. Maffre et al., “Investigation of electrochemical and chemical processes
occurring at positive potentials in ‘Water-in-Salt’ electrolytes,” Journal
of The Electrochemical Society, vol. 168, no. 5. IOP Publishing, 2021.
ista: Maffre M, Bouchal R, Freunberger SA, Lindahl N, Johansson P, Favier F, Fontaine
O, Bélanger D. 2021. Investigation of electrochemical and chemical processes occurring
at positive potentials in “Water-in-Salt” electrolytes. Journal of The Electrochemical
Society. 168(5), 050550.
mla: Maffre, Marion, et al. “Investigation of Electrochemical and Chemical Processes
Occurring at Positive Potentials in ‘Water-in-Salt’ Electrolytes.” Journal
of The Electrochemical Society, vol. 168, no. 5, 050550, IOP Publishing, 2021,
doi:10.1149/1945-7111/ac0300.
short: M. Maffre, R. Bouchal, S.A. Freunberger, N. Lindahl, P. Johansson, F. Favier,
O. Fontaine, D. Bélanger, Journal of The Electrochemical Society 168 (2021).
date_created: 2021-06-03T09:58:38Z
date_published: 2021-05-01T00:00:00Z
date_updated: 2023-09-05T13:25:30Z
day: '01'
department:
- _id: StFr
doi: 10.1149/1945-7111/ac0300
external_id:
isi:
- '000657724200001'
intvolume: ' 168'
isi: 1
issue: '5'
keyword:
- Renewable Energy
- Sustainability and the Environment
- Electrochemistry
- Materials Chemistry
- Electronic
- Optical and Magnetic Materials
- Surfaces
- Coatings and Films
- Condensed Matter Physics
language:
- iso: eng
month: '05'
oa_version: None
publication: Journal of The Electrochemical Society
publication_identifier:
eissn:
- 1945-7111
issn:
- 0013-4651
publication_status: published
publisher: IOP Publishing
quality_controlled: '1'
status: public
title: Investigation of electrochemical and chemical processes occurring at positive
potentials in “Water-in-Salt” electrolytes
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 168
year: '2021'
...
---
_id: '9094'
abstract:
- lang: eng
text: Dendritic cells (DCs) are crucial for the priming of naive T cells and the
initiation of adaptive immunity. Priming is initiated at a heterologous cell–cell
contact, the immunological synapse (IS). While it is established that F-actin
dynamics regulates signaling at the T cell side of the contact, little is known
about the cytoskeletal contribution on the DC side. Here, we show that the DC
actin cytoskeleton is decisive for the formation of a multifocal synaptic structure,
which correlates with T cell priming efficiency. DC actin at the IS appears in
transient foci that are dynamized by the WAVE regulatory complex (WRC). The absence
of the WRC in DCs leads to stabilized contacts with T cells, caused by an increase
in ICAM1-integrin–mediated cell–cell adhesion. This results in lower numbers of
activated and proliferating T cells, demonstrating an important role for DC actin
in the regulation of immune synapse functionality.
article_number: e202006081
article_processing_charge: No
article_type: original
author:
- first_name: Alexander F
full_name: Leithner, Alexander F
id: 3B1B77E4-F248-11E8-B48F-1D18A9856A87
last_name: Leithner
orcid: 0000-0002-1073-744X
- first_name: LM
full_name: Altenburger, LM
last_name: Altenburger
- first_name: R
full_name: Hauschild, R
last_name: Hauschild
- first_name: Frank P
full_name: Assen, Frank P
id: 3A8E7F24-F248-11E8-B48F-1D18A9856A87
last_name: Assen
orcid: 0000-0003-3470-6119
- first_name: K
full_name: Rottner, K
last_name: Rottner
- first_name: Stradal
full_name: TEB, Stradal
last_name: TEB
- first_name: A
full_name: Diz-Muñoz, A
last_name: Diz-Muñoz
- first_name: JV
full_name: Stein, JV
last_name: Stein
- first_name: Michael K
full_name: Sixt, Michael K
id: 41E9FBEA-F248-11E8-B48F-1D18A9856A87
last_name: Sixt
orcid: 0000-0002-6620-9179
citation:
ama: Leithner AF, Altenburger L, Hauschild R, et al. Dendritic cell actin dynamics
control contact duration and priming efficiency at the immunological synapse.
Journal of Cell Biology. 2021;220(4). doi:10.1083/jcb.202006081
apa: Leithner, A. F., Altenburger, L., Hauschild, R., Assen, F. P., Rottner, K.,
TEB, S., … Sixt, M. K. (2021). Dendritic cell actin dynamics control contact duration
and priming efficiency at the immunological synapse. Journal of Cell Biology.
Rockefeller University Press. https://doi.org/10.1083/jcb.202006081
chicago: Leithner, Alexander F, LM Altenburger, R Hauschild, Frank P Assen, K Rottner,
Stradal TEB, A Diz-Muñoz, JV Stein, and Michael K Sixt. “Dendritic Cell Actin
Dynamics Control Contact Duration and Priming Efficiency at the Immunological
Synapse.” Journal of Cell Biology. Rockefeller University Press, 2021.
https://doi.org/10.1083/jcb.202006081.
ieee: A. F. Leithner et al., “Dendritic cell actin dynamics control contact
duration and priming efficiency at the immunological synapse,” Journal of Cell
Biology, vol. 220, no. 4. Rockefeller University Press, 2021.
ista: Leithner AF, Altenburger L, Hauschild R, Assen FP, Rottner K, TEB S, Diz-Muñoz
A, Stein J, Sixt MK. 2021. Dendritic cell actin dynamics control contact duration
and priming efficiency at the immunological synapse. Journal of Cell Biology.
220(4), e202006081.
mla: Leithner, Alexander F., et al. “Dendritic Cell Actin Dynamics Control Contact
Duration and Priming Efficiency at the Immunological Synapse.” Journal of Cell
Biology, vol. 220, no. 4, e202006081, Rockefeller University Press, 2021,
doi:10.1083/jcb.202006081.
short: A.F. Leithner, L. Altenburger, R. Hauschild, F.P. Assen, K. Rottner, S. TEB,
A. Diz-Muñoz, J. Stein, M.K. Sixt, Journal of Cell Biology 220 (2021).
date_created: 2021-02-05T10:08:04Z
date_published: 2021-04-05T00:00:00Z
date_updated: 2023-09-05T13:57:53Z
day: '05'
ddc:
- '570'
department:
- _id: MiSi
doi: 10.1083/jcb.202006081
external_id:
isi:
- '000626365700001'
pmid:
- '33533935'
file:
- access_level: open_access
checksum: 843ebc153847c8626e13c9c5ce71d533
content_type: application/pdf
creator: dernst
date_created: 2022-05-12T14:16:21Z
date_updated: 2022-05-12T14:16:21Z
file_id: '11367'
file_name: 2021_JournCellBiology_Leithner.pdf
file_size: 5102328
relation: main_file
success: 1
file_date_updated: 2022-05-12T14:16:21Z
has_accepted_license: '1'
intvolume: ' 220'
isi: 1
issue: '4'
language:
- iso: eng
license: https://creativecommons.org/licenses/by-nc-sa/4.0/
month: '04'
oa: 1
oa_version: Published Version
pmid: 1
publication: Journal of Cell Biology
publication_identifier:
eissn:
- 1540-8140
issn:
- 0021-9525
publication_status: published
publisher: Rockefeller University Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Dendritic cell actin dynamics control contact duration and priming efficiency
at the immunological synapse
tmp:
image: /images/cc_by_nc_sa.png
legal_code_url: https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC
BY-NC-SA 4.0)
short: CC BY-NC-SA (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 220
year: '2021'
...
---
_id: '9073'
abstract:
- lang: eng
text: The sensory and cognitive abilities of the mammalian neocortex are underpinned
by intricate columnar and laminar circuits formed from an array of diverse neuronal
populations. One approach to determining how interactions between these circuit
components give rise to complex behavior is to investigate the rules by which
cortical circuits are formed and acquire functionality during development. This
review summarizes recent research on the development of the neocortex, from genetic
determination in neural stem cells through to the dynamic role that specific neuronal
populations play in the earliest circuits of neocortex, and how they contribute
to emergent function and cognition. While many of these endeavors take advantage
of model systems, consideration will also be given to advances in our understanding
of activity in nascent human circuits. Such cross-species perspective is imperative
when investigating the mechanisms underlying the dysfunction of early neocortical
circuits in neurodevelopmental disorders, so that one can identify targets amenable
to therapeutic intervention.
acknowledgement: Work in the I.L.H.-O. laboratory was supported by European Research
Council Grant ERC-2015-CoG 681577 and German Research Foundation Ha 4466/10-1, Ha4466/11-1,
Ha4466/12-1, SPP 1665, and SFB 936B5. Work in the S.J.B.B. laboratory was supported
by Biotechnology and Biological Sciences Research Council BB/P003796/1, Medical
Research Council MR/K004387/1 and MR/T033320/1, Wellcome Trust 215199/Z/19/Z and
102386/Z/13/Z, and John Fell Fund. Work in the S.H. laboratory was supported by
European Research Council Grants ERC-2016-CoG 725780 LinPro and FWF SFB F78. This
work was supported by National Institutes of Health Grant NIMH 1R01MH110553 to N.V.D.M.G.
Work in the J.A.C. laboratory was supported by the Ludwig Family Foundation, Simons
Foundation SFARI Research Award, and National Institutes of Health/National Institute
of Mental Health R01 MH102365 and R01MH113852. The B.V. laboratory was supported
by Whitehall Foundation 2017-12-73, National Science Foundation 1736028, National
Institutes of Health, National Institute of General Medical Sciences R01GM134363-01,
and Halıcıoğlu Data Science Institute Fellowship. This work was supported by the
University of California San Diego School of Medicine.
article_processing_charge: No
article_type: original
author:
- first_name: Ileana L.
full_name: Hanganu-Opatz, Ileana L.
last_name: Hanganu-Opatz
- first_name: Simon J. B.
full_name: Butt, Simon J. B.
last_name: Butt
- first_name: Simon
full_name: Hippenmeyer, Simon
id: 37B36620-F248-11E8-B48F-1D18A9856A87
last_name: Hippenmeyer
orcid: 0000-0003-2279-1061
- first_name: Natalia V.
full_name: De Marco García, Natalia V.
last_name: De Marco García
- first_name: Jessica A.
full_name: Cardin, Jessica A.
last_name: Cardin
- first_name: Bradley
full_name: Voytek, Bradley
last_name: Voytek
- first_name: Alysson R.
full_name: Muotri, Alysson R.
last_name: Muotri
citation:
ama: Hanganu-Opatz IL, Butt SJB, Hippenmeyer S, et al. The logic of developing neocortical
circuits in health and disease. The Journal of Neuroscience. 2021;41(5):813-822.
doi:10.1523/jneurosci.1655-20.2020
apa: Hanganu-Opatz, I. L., Butt, S. J. B., Hippenmeyer, S., De Marco García, N.
V., Cardin, J. A., Voytek, B., & Muotri, A. R. (2021). The logic of developing
neocortical circuits in health and disease. The Journal of Neuroscience.
Society for Neuroscience. https://doi.org/10.1523/jneurosci.1655-20.2020
chicago: Hanganu-Opatz, Ileana L., Simon J. B. Butt, Simon Hippenmeyer, Natalia
V. De Marco García, Jessica A. Cardin, Bradley Voytek, and Alysson R. Muotri.
“The Logic of Developing Neocortical Circuits in Health and Disease.” The Journal
of Neuroscience. Society for Neuroscience, 2021. https://doi.org/10.1523/jneurosci.1655-20.2020.
ieee: I. L. Hanganu-Opatz et al., “The logic of developing neocortical circuits
in health and disease,” The Journal of Neuroscience, vol. 41, no. 5. Society
for Neuroscience, pp. 813–822, 2021.
ista: Hanganu-Opatz IL, Butt SJB, Hippenmeyer S, De Marco García NV, Cardin JA,
Voytek B, Muotri AR. 2021. The logic of developing neocortical circuits in health
and disease. The Journal of Neuroscience. 41(5), 813–822.
mla: Hanganu-Opatz, Ileana L., et al. “The Logic of Developing Neocortical Circuits
in Health and Disease.” The Journal of Neuroscience, vol. 41, no. 5, Society
for Neuroscience, 2021, pp. 813–22, doi:10.1523/jneurosci.1655-20.2020.
short: I.L. Hanganu-Opatz, S.J.B. Butt, S. Hippenmeyer, N.V. De Marco García, J.A.
Cardin, B. Voytek, A.R. Muotri, The Journal of Neuroscience 41 (2021) 813–822.
date_created: 2021-02-03T12:23:51Z
date_published: 2021-02-03T00:00:00Z
date_updated: 2023-09-05T14:03:17Z
day: '03'
ddc:
- '570'
department:
- _id: SiHi
doi: 10.1523/jneurosci.1655-20.2020
ec_funded: 1
external_id:
isi:
- '000616763400002'
pmid:
- '33431633'
file:
- access_level: open_access
checksum: 578fd7ed1a0aef74bce61bea2d987b33
content_type: application/pdf
creator: dernst
date_created: 2022-05-27T06:59:55Z
date_updated: 2022-05-27T06:59:55Z
file_id: '11414'
file_name: 2021_JourNeuroscience_Hanganu.pdf
file_size: 1031150
relation: main_file
success: 1
file_date_updated: 2022-05-27T06:59:55Z
has_accepted_license: '1'
intvolume: ' 41'
isi: 1
issue: '5'
keyword:
- General Neuroscience
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: 813-822
pmid: 1
project:
- _id: 260018B0-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '725780'
name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
- _id: 059F6AB4-7A3F-11EA-A408-12923DDC885E
grant_number: F07805
name: Molecular Mechanisms of Neural Stem Cell Lineage Progression
publication: The Journal of Neuroscience
publication_identifier:
eissn:
- 1529-2401
issn:
- 0270-6474
publication_status: published
publisher: Society for Neuroscience
quality_controlled: '1'
scopus_import: '1'
status: public
title: The logic of developing neocortical circuits in health and disease
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 41
year: '2021'
...
---
_id: '10211'
abstract:
- lang: eng
text: "We study the problem of recovering an unknown signal \U0001D465\U0001D465
given measurements obtained from a generalized linear model with a Gaussian sensing
matrix. Two popular solutions are based on a linear estimator \U0001D465\U0001D465^L
and a spectral estimator \U0001D465\U0001D465^s. The former is a data-dependent
linear combination of the columns of the measurement matrix, and its analysis
is quite simple. The latter is the principal eigenvector of a data-dependent matrix,
and a recent line of work has studied its performance. In this paper, we show
how to optimally combine \U0001D465\U0001D465^L and \U0001D465\U0001D465^s. At
the heart of our analysis is the exact characterization of the empirical joint
distribution of (\U0001D465\U0001D465,\U0001D465\U0001D465^L,\U0001D465\U0001D465^s)
in the high-dimensional limit. This allows us to compute the Bayes-optimal combination
of \U0001D465\U0001D465^L and \U0001D465\U0001D465^s, given the limiting distribution
of the signal \U0001D465\U0001D465. When the distribution of the signal is Gaussian,
then the Bayes-optimal combination has the form \U0001D703\U0001D465\U0001D465^L+\U0001D465\U0001D465^s
and we derive the optimal combination coefficient. In order to establish the limiting
distribution of (\U0001D465\U0001D465,\U0001D465\U0001D465^L,\U0001D465\U0001D465^s),
we design and analyze an approximate message passing algorithm whose iterates
give \U0001D465\U0001D465^L and approach \U0001D465\U0001D465^s. Numerical simulations
demonstrate the improvement of the proposed combination with respect to the two
methods considered separately."
acknowledgement: M. Mondelli would like to thank Andrea Montanari for helpful discussions.
All the authors would like to thank the anonymous reviewers for their helpful comments.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Marco
full_name: Mondelli, Marco
id: 27EB676C-8706-11E9-9510-7717E6697425
last_name: Mondelli
orcid: 0000-0002-3242-7020
- first_name: Christos
full_name: Thrampoulidis, Christos
last_name: Thrampoulidis
- first_name: Ramji
full_name: Venkataramanan, Ramji
last_name: Venkataramanan
citation:
ama: Mondelli M, Thrampoulidis C, Venkataramanan R. Optimal combination of linear
and spectral estimators for generalized linear models. Foundations of Computational
Mathematics. 2021. doi:10.1007/s10208-021-09531-x
apa: Mondelli, M., Thrampoulidis, C., & Venkataramanan, R. (2021). Optimal combination
of linear and spectral estimators for generalized linear models. Foundations
of Computational Mathematics. Springer. https://doi.org/10.1007/s10208-021-09531-x
chicago: Mondelli, Marco, Christos Thrampoulidis, and Ramji Venkataramanan. “Optimal
Combination of Linear and Spectral Estimators for Generalized Linear Models.”
Foundations of Computational Mathematics. Springer, 2021. https://doi.org/10.1007/s10208-021-09531-x.
ieee: M. Mondelli, C. Thrampoulidis, and R. Venkataramanan, “Optimal combination
of linear and spectral estimators for generalized linear models,” Foundations
of Computational Mathematics. Springer, 2021.
ista: Mondelli M, Thrampoulidis C, Venkataramanan R. 2021. Optimal combination of
linear and spectral estimators for generalized linear models. Foundations of Computational
Mathematics.
mla: Mondelli, Marco, et al. “Optimal Combination of Linear and Spectral Estimators
for Generalized Linear Models.” Foundations of Computational Mathematics,
Springer, 2021, doi:10.1007/s10208-021-09531-x.
short: M. Mondelli, C. Thrampoulidis, R. Venkataramanan, Foundations of Computational
Mathematics (2021).
date_created: 2021-11-03T10:59:08Z
date_published: 2021-08-17T00:00:00Z
date_updated: 2023-09-05T14:13:57Z
day: '17'
ddc:
- '510'
department:
- _id: MaMo
doi: 10.1007/s10208-021-09531-x
external_id:
arxiv:
- '2008.03326'
isi:
- '000685721000001'
file:
- access_level: open_access
checksum: 9ea12dd8045a0678000a3a59295221cb
content_type: application/pdf
creator: alisjak
date_created: 2021-12-13T15:47:54Z
date_updated: 2021-12-13T15:47:54Z
file_id: '10542'
file_name: 2021_Springer_Mondelli.pdf
file_size: 2305731
relation: main_file
success: 1
file_date_updated: 2021-12-13T15:47:54Z
has_accepted_license: '1'
isi: 1
keyword:
- Applied Mathematics
- Computational Theory and Mathematics
- Computational Mathematics
- Analysis
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
publication: Foundations of Computational Mathematics
publication_identifier:
eissn:
- 1615-3383
issn:
- 1615-3375
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
status: public
title: Optimal combination of linear and spectral estimators for generalized linear
models
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2021'
...
---
_id: '8940'
abstract:
- lang: eng
text: We quantise Whitney’s construction to prove the existence of a triangulation
for any C^2 manifold, so that we get an algorithm with explicit bounds. We also
give a new elementary proof, which is completely geometric.
acknowledgement: This work has been funded by the European Research Council under
the European Union’s ERC Grant Agreement Number 339025 GUDHI (Algorithmic Foundations
of Geometric Understanding in Higher Dimensions). The third author also received
funding from the European Union’s Horizon 2020 research and innovation programme
under the Marie Skłodowska-Curie Grant Agreement No. 754411. Open access funding
provided by the Institute of Science and Technology (IST Austria).
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Jean-Daniel
full_name: Boissonnat, Jean-Daniel
last_name: Boissonnat
- first_name: Siargey
full_name: Kachanovich, Siargey
last_name: Kachanovich
- first_name: Mathijs
full_name: Wintraecken, Mathijs
id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
last_name: Wintraecken
orcid: 0000-0002-7472-2220
citation:
ama: 'Boissonnat J-D, Kachanovich S, Wintraecken M. Triangulating submanifolds:
An elementary and quantified version of Whitney’s method. Discrete & Computational
Geometry. 2021;66(1):386-434. doi:10.1007/s00454-020-00250-8'
apa: 'Boissonnat, J.-D., Kachanovich, S., & Wintraecken, M. (2021). Triangulating
submanifolds: An elementary and quantified version of Whitney’s method. Discrete
& Computational Geometry. Springer Nature. https://doi.org/10.1007/s00454-020-00250-8'
chicago: 'Boissonnat, Jean-Daniel, Siargey Kachanovich, and Mathijs Wintraecken.
“Triangulating Submanifolds: An Elementary and Quantified Version of Whitney’s
Method.” Discrete & Computational Geometry. Springer Nature, 2021.
https://doi.org/10.1007/s00454-020-00250-8.'
ieee: 'J.-D. Boissonnat, S. Kachanovich, and M. Wintraecken, “Triangulating submanifolds:
An elementary and quantified version of Whitney’s method,” Discrete & Computational
Geometry, vol. 66, no. 1. Springer Nature, pp. 386–434, 2021.'
ista: 'Boissonnat J-D, Kachanovich S, Wintraecken M. 2021. Triangulating submanifolds:
An elementary and quantified version of Whitney’s method. Discrete & Computational
Geometry. 66(1), 386–434.'
mla: 'Boissonnat, Jean-Daniel, et al. “Triangulating Submanifolds: An Elementary
and Quantified Version of Whitney’s Method.” Discrete & Computational Geometry,
vol. 66, no. 1, Springer Nature, 2021, pp. 386–434, doi:10.1007/s00454-020-00250-8.'
short: J.-D. Boissonnat, S. Kachanovich, M. Wintraecken, Discrete & Computational
Geometry 66 (2021) 386–434.
date_created: 2020-12-12T11:07:02Z
date_published: 2021-07-01T00:00:00Z
date_updated: 2023-09-05T15:02:40Z
day: '01'
ddc:
- '516'
department:
- _id: HeEd
doi: 10.1007/s00454-020-00250-8
ec_funded: 1
external_id:
isi:
- '000597770300001'
file:
- access_level: open_access
checksum: c848986091e56699dc12de85adb1e39c
content_type: application/pdf
creator: kschuh
date_created: 2021-08-06T09:52:29Z
date_updated: 2021-08-06T09:52:29Z
file_id: '9795'
file_name: 2021_DescreteCompGeopmetry_Boissonnat.pdf
file_size: 983307
relation: main_file
success: 1
file_date_updated: 2021-08-06T09:52:29Z
has_accepted_license: '1'
intvolume: ' 66'
isi: 1
issue: '1'
keyword:
- Theoretical Computer Science
- Computational Theory and Mathematics
- Geometry and Topology
- Discrete Mathematics and Combinatorics
language:
- iso: eng
month: '07'
oa: 1
oa_version: Published Version
page: 386-434
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Discrete & Computational Geometry
publication_identifier:
eissn:
- 1432-0444
issn:
- 0179-5376
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: 'Triangulating submanifolds: An elementary and quantified version of Whitney’s
method'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 66
year: '2021'
...
---
_id: '9121'
abstract:
- lang: eng
text: "We show that the energy gap for the BCS gap equation is\r\nΞ=μ(8e−2+o(1))exp(π2μ−−√a)\r\nin
the low density limit μ→0. Together with the similar result for the critical temperature
by Hainzl and Seiringer (Lett Math Phys 84: 99–107, 2008), this shows that, in
the low density limit, the ratio of the energy gap and critical temperature is
a universal constant independent of the interaction potential V. The results hold
for a class of potentials with negative scattering length a and no bound states."
acknowledgement: "Most of this work was done as part of the author’s master’s thesis.
The author would like to thank Jan Philip Solovej for his supervision of this process.\r\nOpen
Access funding provided by Institute of Science and Technology (IST Austria)"
article_number: '20'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Asbjørn Bækgaard
full_name: Lauritsen, Asbjørn Bækgaard
id: e1a2682f-dc8d-11ea-abe3-81da9ac728f1
last_name: Lauritsen
orcid: 0000-0003-4476-2288
citation:
ama: Lauritsen AB. The BCS energy gap at low density. Letters in Mathematical
Physics. 2021;111. doi:10.1007/s11005-021-01358-5
apa: Lauritsen, A. B. (2021). The BCS energy gap at low density. Letters in Mathematical
Physics. Springer Nature. https://doi.org/10.1007/s11005-021-01358-5
chicago: Lauritsen, Asbjørn Bækgaard. “The BCS Energy Gap at Low Density.” Letters
in Mathematical Physics. Springer Nature, 2021. https://doi.org/10.1007/s11005-021-01358-5.
ieee: A. B. Lauritsen, “The BCS energy gap at low density,” Letters in Mathematical
Physics, vol. 111. Springer Nature, 2021.
ista: Lauritsen AB. 2021. The BCS energy gap at low density. Letters in Mathematical
Physics. 111, 20.
mla: Lauritsen, Asbjørn Bækgaard. “The BCS Energy Gap at Low Density.” Letters
in Mathematical Physics, vol. 111, 20, Springer Nature, 2021, doi:10.1007/s11005-021-01358-5.
short: A.B. Lauritsen, Letters in Mathematical Physics 111 (2021).
date_created: 2021-02-15T09:27:14Z
date_published: 2021-02-12T00:00:00Z
date_updated: 2023-09-05T15:17:16Z
day: '12'
ddc:
- '510'
department:
- _id: GradSch
doi: 10.1007/s11005-021-01358-5
external_id:
isi:
- '000617531900001'
file:
- access_level: open_access
checksum: eaf1b3ff5026f120f0929a5c417dc842
content_type: application/pdf
creator: dernst
date_created: 2021-02-15T09:31:07Z
date_updated: 2021-02-15T09:31:07Z
file_id: '9122'
file_name: 2021_LettersMathPhysics_Lauritsen.pdf
file_size: 329332
relation: main_file
success: 1
file_date_updated: 2021-02-15T09:31:07Z
has_accepted_license: '1'
intvolume: ' 111'
isi: 1
keyword:
- Mathematical Physics
- Statistical and Nonlinear Physics
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
project:
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
publication: Letters in Mathematical Physics
publication_identifier:
eissn:
- 1573-0530
issn:
- 0377-9017
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
status: public
title: The BCS energy gap at low density
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 111
year: '2021'
...
---
_id: '9234'
abstract:
- lang: eng
text: In this paper, we present two new inertial projection-type methods for solving
multivalued variational inequality problems in finite-dimensional spaces. We establish
the convergence of the sequence generated by these methods when the multivalued
mapping associated with the problem is only required to be locally bounded without
any monotonicity assumption. Furthermore, the inertial techniques that we employ
in this paper are quite different from the ones used in most papers. Moreover,
based on the weaker assumptions on the inertial factor in our methods, we derive
several special cases of our methods. Finally, we present some experimental results
to illustrate the profits that we gain by introducing the inertial extrapolation
steps.
acknowledgement: 'The authors sincerely thank the Editor-in-Chief and anonymous referees
for their careful reading, constructive comments and fruitful suggestions that help
improve the manuscript. The research of the first author is supported by the National
Research Foundation (NRF) South Africa (S& F-DSI/NRF Free Standing Postdoctoral
Fellowship; Grant Number: 120784). The first author also acknowledges the financial
support from DSI/NRF, South Africa Center of Excellence in Mathematical and Statistical
Sciences (CoE-MaSS) Postdoctoral Fellowship. The second author has received funding
from the European Research Council (ERC) under the European Union’s Seventh Framework
Program (FP7 - 2007-2013) (Grant agreement No. 616160). Open Access funding provided
by Institute of Science and Technology (IST Austria).'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Chinedu
full_name: Izuchukwu, Chinedu
last_name: Izuchukwu
- first_name: Yekini
full_name: Shehu, Yekini
id: 3FC7CB58-F248-11E8-B48F-1D18A9856A87
last_name: Shehu
orcid: 0000-0001-9224-7139
citation:
ama: Izuchukwu C, Shehu Y. New inertial projection methods for solving multivalued
variational inequality problems beyond monotonicity. Networks and Spatial Economics.
2021;21(2):291-323. doi:10.1007/s11067-021-09517-w
apa: Izuchukwu, C., & Shehu, Y. (2021). New inertial projection methods for
solving multivalued variational inequality problems beyond monotonicity. Networks
and Spatial Economics. Springer Nature. https://doi.org/10.1007/s11067-021-09517-w
chicago: Izuchukwu, Chinedu, and Yekini Shehu. “New Inertial Projection Methods
for Solving Multivalued Variational Inequality Problems beyond Monotonicity.”
Networks and Spatial Economics. Springer Nature, 2021. https://doi.org/10.1007/s11067-021-09517-w.
ieee: C. Izuchukwu and Y. Shehu, “New inertial projection methods for solving multivalued
variational inequality problems beyond monotonicity,” Networks and Spatial
Economics, vol. 21, no. 2. Springer Nature, pp. 291–323, 2021.
ista: Izuchukwu C, Shehu Y. 2021. New inertial projection methods for solving multivalued
variational inequality problems beyond monotonicity. Networks and Spatial Economics.
21(2), 291–323.
mla: Izuchukwu, Chinedu, and Yekini Shehu. “New Inertial Projection Methods for
Solving Multivalued Variational Inequality Problems beyond Monotonicity.” Networks
and Spatial Economics, vol. 21, no. 2, Springer Nature, 2021, pp. 291–323,
doi:10.1007/s11067-021-09517-w.
short: C. Izuchukwu, Y. Shehu, Networks and Spatial Economics 21 (2021) 291–323.
date_created: 2021-03-10T12:18:47Z
date_published: 2021-06-01T00:00:00Z
date_updated: 2023-09-05T15:32:32Z
day: '01'
ddc:
- '510'
department:
- _id: VlKo
doi: 10.1007/s11067-021-09517-w
ec_funded: 1
external_id:
isi:
- '000625002100001'
file:
- access_level: open_access
checksum: 22b4253a2e5da843622a2df713784b4c
content_type: application/pdf
creator: kschuh
date_created: 2021-08-11T12:44:16Z
date_updated: 2021-08-11T12:44:16Z
file_id: '9884'
file_name: 2021_NetworksSpatialEconomics_Shehu.pdf
file_size: 834964
relation: main_file
success: 1
file_date_updated: 2021-08-11T12:44:16Z
has_accepted_license: '1'
intvolume: ' 21'
isi: 1
issue: '2'
keyword:
- Computer Networks and Communications
- Software
- Artificial Intelligence
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 291-323
project:
- _id: 25FBA906-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '616160'
name: 'Discrete Optimization in Computer Vision: Theory and Practice'
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
publication: Networks and Spatial Economics
publication_identifier:
eissn:
- 1572-9427
issn:
- 1566-113X
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: New inertial projection methods for solving multivalued variational inequality
problems beyond monotonicity
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 21
year: '2021'
...
---
_id: '9111'
abstract:
- lang: eng
text: 'We study the probabilistic convergence between the mapper graph and the Reeb
graph of a topological space X equipped with a continuous function f:X→R. We first
give a categorification of the mapper graph and the Reeb graph by interpreting
them in terms of cosheaves and stratified covers of the real line R. We then introduce
a variant of the classic mapper graph of Singh et al. (in: Eurographics symposium
on point-based graphics, 2007), referred to as the enhanced mapper graph, and
demonstrate that such a construction approximates the Reeb graph of (X,f) when
it is applied to points randomly sampled from a probability density function concentrated
on (X,f). Our techniques are based on the interleaving distance of constructible
cosheaves and topological estimation via kernel density estimates. Following Munch
and Wang (In: 32nd international symposium on computational geometry, volume 51
of Leibniz international proceedings in informatics (LIPIcs), Dagstuhl, Germany,
pp 53:1–53:16, 2016), we first show that the mapper graph of (X,f), a constructible
R-space (with a fixed open cover), approximates the Reeb graph of the same space.
We then construct an isomorphism between the mapper of (X,f) to the mapper of
a super-level set of a probability density function concentrated on (X,f). Finally,
building on the approach of Bobrowski et al. (Bernoulli 23(1):288–328, 2017b),
we show that, with high probability, we can recover the mapper of the super-level
set given a sufficiently large sample. Our work is the first to consider the mapper
construction using the theory of cosheaves in a probabilistic setting. It is part
of an ongoing effort to combine sheaf theory, probability, and statistics, to
support topological data analysis with random data.'
acknowledgement: "AB was supported in part by the European Union’s Horizon 2020 research
and innovation\r\nprogramme under the Marie Sklodowska-Curie GrantAgreement No.
754411 and NSF IIS-1513616. OB was supported in part by the Israel Science Foundation,
Grant 1965/19. BW was supported in part by NSF IIS-1513616 and DBI-1661375. EM was
supported in part by NSF CMMI-1800466, DMS-1800446, and CCF-1907591.We would like
to thank the Institute for Mathematics and its Applications for hosting a workshop
titled Bridging Statistics and Sheaves in May 2018, where this work was conceived.\r\nOpen
Access funding provided by Institute of Science and Technology (IST Austria)."
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Adam
full_name: Brown, Adam
id: 70B7FDF6-608D-11E9-9333-8535E6697425
last_name: Brown
- first_name: Omer
full_name: Bobrowski, Omer
last_name: Bobrowski
- first_name: Elizabeth
full_name: Munch, Elizabeth
last_name: Munch
- first_name: Bei
full_name: Wang, Bei
last_name: Wang
citation:
ama: Brown A, Bobrowski O, Munch E, Wang B. Probabilistic convergence and stability
of random mapper graphs. Journal of Applied and Computational Topology.
2021;5(1):99-140. doi:10.1007/s41468-020-00063-x
apa: Brown, A., Bobrowski, O., Munch, E., & Wang, B. (2021). Probabilistic convergence
and stability of random mapper graphs. Journal of Applied and Computational
Topology. Springer Nature. https://doi.org/10.1007/s41468-020-00063-x
chicago: Brown, Adam, Omer Bobrowski, Elizabeth Munch, and Bei Wang. “Probabilistic
Convergence and Stability of Random Mapper Graphs.” Journal of Applied and
Computational Topology. Springer Nature, 2021. https://doi.org/10.1007/s41468-020-00063-x.
ieee: A. Brown, O. Bobrowski, E. Munch, and B. Wang, “Probabilistic convergence
and stability of random mapper graphs,” Journal of Applied and Computational
Topology, vol. 5, no. 1. Springer Nature, pp. 99–140, 2021.
ista: Brown A, Bobrowski O, Munch E, Wang B. 2021. Probabilistic convergence and
stability of random mapper graphs. Journal of Applied and Computational Topology.
5(1), 99–140.
mla: Brown, Adam, et al. “Probabilistic Convergence and Stability of Random Mapper
Graphs.” Journal of Applied and Computational Topology, vol. 5, no. 1,
Springer Nature, 2021, pp. 99–140, doi:10.1007/s41468-020-00063-x.
short: A. Brown, O. Bobrowski, E. Munch, B. Wang, Journal of Applied and Computational
Topology 5 (2021) 99–140.
date_created: 2021-02-11T14:41:02Z
date_published: 2021-03-01T00:00:00Z
date_updated: 2023-09-05T15:37:56Z
day: '01'
ddc:
- '510'
department:
- _id: HeEd
doi: 10.1007/s41468-020-00063-x
ec_funded: 1
external_id:
arxiv:
- '1909.03488'
file:
- access_level: open_access
checksum: 3f02e9d47c428484733da0f588a3c069
content_type: application/pdf
creator: dernst
date_created: 2021-02-11T14:43:59Z
date_updated: 2021-02-11T14:43:59Z
file_id: '9112'
file_name: 2020_JourApplCompTopology_Brown.pdf
file_size: 2090265
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success: 1
file_date_updated: 2021-02-11T14:43:59Z
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intvolume: ' 5'
issue: '1'
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- iso: eng
month: '03'
oa: 1
oa_version: Published Version
page: 99-140
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Journal of Applied and Computational Topology
publication_identifier:
eissn:
- 2367-1734
issn:
- 2367-1726
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Probabilistic convergence and stability of random mapper graphs
tmp:
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name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 5
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...
---
_id: '9252'
abstract:
- lang: eng
text: 'This paper analyses the conditions for local adaptation in a metapopulation
with infinitely many islands under a model of hard selection, where population
size depends on local fitness. Each island belongs to one of two distinct ecological
niches or habitats. Fitness is influenced by an additive trait which is under
habitat‐dependent directional selection. Our analysis is based on the diffusion
approximation and accounts for both genetic drift and demographic stochasticity.
By neglecting linkage disequilibria, it yields the joint distribution of allele
frequencies and population size on each island. We find that under hard selection,
the conditions for local adaptation in a rare habitat are more restrictive for
more polygenic traits: even moderate migration load per locus at very many loci
is sufficient for population sizes to decline. This further reduces the efficacy
of selection at individual loci due to increased drift and because smaller populations
are more prone to swamping due to migration, causing a positive feedback between
increasing maladaptation and declining population sizes. Our analysis also highlights
the importance of demographic stochasticity, which exacerbates the decline in
numbers of maladapted populations, leading to population collapse in the rare
habitat at significantly lower migration than predicted by deterministic arguments.'
acknowledgement: We thank the reviewers for their helpful comments, and also our colleagues,
for illuminating discussions over the long gestation of this paper.
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Eniko
full_name: Szep, Eniko
id: 485BB5A4-F248-11E8-B48F-1D18A9856A87
last_name: Szep
- first_name: Himani
full_name: Sachdeva, Himani
id: 42377A0A-F248-11E8-B48F-1D18A9856A87
last_name: Sachdeva
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
citation:
ama: 'Szep E, Sachdeva H, Barton NH. Polygenic local adaptation in metapopulations:
A stochastic eco‐evolutionary model. Evolution. 2021;75(5):1030-1045. doi:10.1111/evo.14210'
apa: 'Szep, E., Sachdeva, H., & Barton, N. H. (2021). Polygenic local adaptation
in metapopulations: A stochastic eco‐evolutionary model. Evolution. Wiley.
https://doi.org/10.1111/evo.14210'
chicago: 'Szep, Eniko, Himani Sachdeva, and Nicholas H Barton. “Polygenic Local
Adaptation in Metapopulations: A Stochastic Eco‐evolutionary Model.” Evolution.
Wiley, 2021. https://doi.org/10.1111/evo.14210.'
ieee: 'E. Szep, H. Sachdeva, and N. H. Barton, “Polygenic local adaptation in metapopulations:
A stochastic eco‐evolutionary model,” Evolution, vol. 75, no. 5. Wiley,
pp. 1030–1045, 2021.'
ista: 'Szep E, Sachdeva H, Barton NH. 2021. Polygenic local adaptation in metapopulations:
A stochastic eco‐evolutionary model. Evolution. 75(5), 1030–1045.'
mla: 'Szep, Eniko, et al. “Polygenic Local Adaptation in Metapopulations: A Stochastic
Eco‐evolutionary Model.” Evolution, vol. 75, no. 5, Wiley, 2021, pp. 1030–45,
doi:10.1111/evo.14210.'
short: E. Szep, H. Sachdeva, N.H. Barton, Evolution 75 (2021) 1030–1045.
date_created: 2021-03-20T08:22:10Z
date_published: 2021-05-01T00:00:00Z
date_updated: 2023-09-05T15:44:06Z
day: '01'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.1111/evo.14210
external_id:
isi:
- '000636966300001'
file:
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creator: kschuh
date_created: 2021-08-11T13:39:19Z
date_updated: 2021-08-11T13:39:19Z
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file_name: 2021_Evolution_Szep.pdf
file_size: 734102
relation: main_file
success: 1
file_date_updated: 2021-08-11T13:39:19Z
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intvolume: ' 75'
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keyword:
- Genetics
- Ecology
- Evolution
- Behavior and Systematics
- General Agricultural and Biological Sciences
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 1030-1045
publication: Evolution
publication_identifier:
eissn:
- 1558-5646
issn:
- 0014-3820
publication_status: published
publisher: Wiley
quality_controlled: '1'
related_material:
record:
- id: '13062'
relation: research_data
status: public
scopus_import: '1'
status: public
title: 'Polygenic local adaptation in metapopulations: A stochastic eco‐evolutionary
model'
tmp:
image: /images/cc_by_nc_nd.png
legal_code_url: https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode
name: Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International
(CC BY-NC-ND 4.0)
short: CC BY-NC-ND (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 75
year: '2021'
...
---
_id: '9374'
abstract:
- lang: eng
text: If there are no constraints on the process of speciation, then the number
of species might be expected to match the number of available niches and this
number might be indefinitely large. One possible constraint is the opportunity
for allopatric divergence. In 1981, Felsenstein used a simple and elegant model
to ask if there might also be genetic constraints. He showed that progress towards
speciation could be described by the build‐up of linkage disequilibrium among
divergently selected loci and between these loci and those contributing to other
forms of reproductive isolation. Therefore, speciation is opposed by recombination,
because it tends to break down linkage disequilibria. Felsenstein then introduced
a crucial distinction between “two‐allele” models, which are subject to this effect,
and “one‐allele” models, which are free from the recombination constraint. These
fundamentally important insights have been the foundation for both empirical and
theoretical studies of speciation ever since.
acknowledgement: RKB was funded by the Natural Environment Research Council (NE/P012272/1
& NE/P001610/1), the European Research Council (693030 BARRIERS), and the Swedish
Research Council (VR) (2018‐03695). MRS was funded by the National Science Foundation
(Grant No. DEB1939290).
article_processing_charge: No
article_type: original
author:
- first_name: Roger K.
full_name: Butlin, Roger K.
last_name: Butlin
- first_name: Maria R.
full_name: Servedio, Maria R.
last_name: Servedio
- first_name: Carole M.
full_name: Smadja, Carole M.
last_name: Smadja
- first_name: Claudia
full_name: Bank, Claudia
last_name: Bank
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
- first_name: Samuel M.
full_name: Flaxman, Samuel M.
last_name: Flaxman
- first_name: Tatiana
full_name: Giraud, Tatiana
last_name: Giraud
- first_name: Robin
full_name: Hopkins, Robin
last_name: Hopkins
- first_name: Erica L.
full_name: Larson, Erica L.
last_name: Larson
- first_name: Martine E.
full_name: Maan, Martine E.
last_name: Maan
- first_name: Joana
full_name: Meier, Joana
last_name: Meier
- first_name: Richard
full_name: Merrill, Richard
last_name: Merrill
- first_name: Mohamed A. F.
full_name: Noor, Mohamed A. F.
last_name: Noor
- first_name: Daniel
full_name: Ortiz‐Barrientos, Daniel
last_name: Ortiz‐Barrientos
- first_name: Anna
full_name: Qvarnström, Anna
last_name: Qvarnström
citation:
ama: Butlin RK, Servedio MR, Smadja CM, et al. Homage to Felsenstein 1981, or why
are there so few/many species? Evolution. 2021;75(5):978-988. doi:10.1111/evo.14235
apa: Butlin, R. K., Servedio, M. R., Smadja, C. M., Bank, C., Barton, N. H., Flaxman,
S. M., … Qvarnström, A. (2021). Homage to Felsenstein 1981, or why are there so
few/many species? Evolution. Wiley. https://doi.org/10.1111/evo.14235
chicago: Butlin, Roger K., Maria R. Servedio, Carole M. Smadja, Claudia Bank, Nicholas
H Barton, Samuel M. Flaxman, Tatiana Giraud, et al. “Homage to Felsenstein 1981,
or Why Are There so Few/Many Species?” Evolution. Wiley, 2021. https://doi.org/10.1111/evo.14235.
ieee: R. K. Butlin et al., “Homage to Felsenstein 1981, or why are there
so few/many species?,” Evolution, vol. 75, no. 5. Wiley, pp. 978–988, 2021.
ista: Butlin RK, Servedio MR, Smadja CM, Bank C, Barton NH, Flaxman SM, Giraud T,
Hopkins R, Larson EL, Maan ME, Meier J, Merrill R, Noor MAF, Ortiz‐Barrientos
D, Qvarnström A. 2021. Homage to Felsenstein 1981, or why are there so few/many
species? Evolution. 75(5), 978–988.
mla: Butlin, Roger K., et al. “Homage to Felsenstein 1981, or Why Are There so Few/Many
Species?” Evolution, vol. 75, no. 5, Wiley, 2021, pp. 978–88, doi:10.1111/evo.14235.
short: R.K. Butlin, M.R. Servedio, C.M. Smadja, C. Bank, N.H. Barton, S.M. Flaxman,
T. Giraud, R. Hopkins, E.L. Larson, M.E. Maan, J. Meier, R. Merrill, M.A.F. Noor,
D. Ortiz‐Barrientos, A. Qvarnström, Evolution 75 (2021) 978–988.
date_created: 2021-05-06T04:34:47Z
date_published: 2021-04-19T00:00:00Z
date_updated: 2023-09-05T15:44:33Z
day: '19'
department:
- _id: NiBa
doi: 10.1111/evo.14235
external_id:
isi:
- '000647224000001'
intvolume: ' 75'
isi: 1
issue: '5'
keyword:
- Genetics
- Ecology
- Evolution
- Behavior and Systematics
- General Agricultural and Biological Sciences
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://onlinelibrary.wiley.com/doi/10.1111/evo.14235
month: '04'
oa: 1
oa_version: Published Version
page: 978-988
publication: Evolution
publication_identifier:
eissn:
- 1558-5646
issn:
- 0014-3820
publication_status: published
publisher: Wiley
quality_controlled: '1'
status: public
title: Homage to Felsenstein 1981, or why are there so few/many species?
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 75
year: '2021'
...
---
_id: '13062'
abstract:
- lang: eng
text: 'This paper analyzes the conditions for local adaptation in a metapopulation
with infinitely many islands under a model of hard selection, where population
size depends on local fitness. Each island belongs to one of two distinct ecological
niches or habitats. Fitness is influenced by an additive trait which is under
habitat-dependent directional selection. Our analysis is based on the diffusion
approximation and accounts for both genetic drift and demographic stochasticity.
By neglecting linkage disequilibria, it yields the joint distribution of allele
frequencies and population size on each island. We find that under hard selection,
the conditions for local adaptation in a rare habitat are more restrictive for
more polygenic traits: even moderate migration load per locus at very many loci
is sufficient for population sizes to decline. This further reduces the efficacy
of selection at individual loci due to increased drift and because smaller populations
are more prone to swamping due to migration, causing a positive feedback between
increasing maladaptation and declining population sizes. Our analysis also highlights
the importance of demographic stochasticity, which exacerbates the decline in
numbers of maladapted populations, leading to population collapse in the rare
habitat at significantly lower migration than predicted by deterministic arguments.'
article_processing_charge: No
author:
- first_name: Eniko
full_name: Szep, Eniko
id: 485BB5A4-F248-11E8-B48F-1D18A9856A87
last_name: Szep
- first_name: Himani
full_name: Sachdeva, Himani
id: 42377A0A-F248-11E8-B48F-1D18A9856A87
last_name: Sachdeva
- first_name: Nicholas H
full_name: Barton, Nicholas H
id: 4880FE40-F248-11E8-B48F-1D18A9856A87
last_name: Barton
orcid: 0000-0002-8548-5240
citation:
ama: 'Szep E, Sachdeva H, Barton NH. Supplementary code for: Polygenic local adaptation
in metapopulations: A stochastic eco-evolutionary model. 2021. doi:10.5061/DRYAD.8GTHT76P1'
apa: 'Szep, E., Sachdeva, H., & Barton, N. H. (2021). Supplementary code for:
Polygenic local adaptation in metapopulations: A stochastic eco-evolutionary model.
Dryad. https://doi.org/10.5061/DRYAD.8GTHT76P1'
chicago: 'Szep, Eniko, Himani Sachdeva, and Nicholas H Barton. “Supplementary Code
for: Polygenic Local Adaptation in Metapopulations: A Stochastic Eco-Evolutionary
Model.” Dryad, 2021. https://doi.org/10.5061/DRYAD.8GTHT76P1.'
ieee: 'E. Szep, H. Sachdeva, and N. H. Barton, “Supplementary code for: Polygenic
local adaptation in metapopulations: A stochastic eco-evolutionary model.” Dryad,
2021.'
ista: 'Szep E, Sachdeva H, Barton NH. 2021. Supplementary code for: Polygenic local
adaptation in metapopulations: A stochastic eco-evolutionary model, Dryad, 10.5061/DRYAD.8GTHT76P1.'
mla: 'Szep, Eniko, et al. Supplementary Code for: Polygenic Local Adaptation
in Metapopulations: A Stochastic Eco-Evolutionary Model. Dryad, 2021, doi:10.5061/DRYAD.8GTHT76P1.'
short: E. Szep, H. Sachdeva, N.H. Barton, (2021).
date_created: 2023-05-23T16:17:02Z
date_published: 2021-03-02T00:00:00Z
date_updated: 2023-09-05T15:44:05Z
day: '02'
ddc:
- '570'
department:
- _id: NiBa
doi: 10.5061/DRYAD.8GTHT76P1
license: https://creativecommons.org/publicdomain/zero/1.0/
main_file_link:
- open_access: '1'
url: https://doi.org/10.5061/dryad.8gtht76p1
month: '03'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
record:
- id: '9252'
relation: used_in_publication
status: public
status: public
title: 'Supplementary code for: Polygenic local adaptation in metapopulations: A stochastic
eco-evolutionary model'
tmp:
image: /images/cc_0.png
legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
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short: CC0 (1.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '10838'
abstract:
- lang: eng
text: Combining hybrid zone analysis with genomic data is a promising approach to
understanding the genomic basis of adaptive divergence. It allows for the identification
of genomic regions underlying barriers to gene flow. It also provides insights
into spatial patterns of allele frequency change, informing about the interplay
between environmental factors, dispersal and selection. However, when only a single
hybrid zone is analysed, it is difficult to separate patterns generated by selection
from those resulting from chance. Therefore, it is beneficial to look for repeatable
patterns across replicate hybrid zones in the same system. We applied this approach
to the marine snail Littorina saxatilis, which contains two ecotypes, adapted
to wave-exposed rocks vs. high-predation boulder fields. The existence of numerous
hybrid zones between ecotypes offered the opportunity to test for the repeatability
of genomic architectures and spatial patterns of divergence. We sampled and phenotyped
snails from seven replicate hybrid zones on the Swedish west coast and genotyped
them for thousands of single nucleotide polymorphisms. Shell shape and size showed
parallel clines across all zones. Many genomic regions showing steep clines and/or
high differentiation were shared among hybrid zones, consistent with a common
evolutionary history and extensive gene flow between zones, and supporting the
importance of these regions for divergence. In particular, we found that several
large putative inversions contribute to divergence in all locations. Additionally,
we found evidence for consistent displacement of clines from the boulder–rock
transition. Our results demonstrate patterns of spatial variation that would not
be accessible without continuous spatial sampling, a large genomic data set and
replicate hybrid zones.
acknowledgement: "We thank everyone who helped with fieldwork, snail processing and
DNA extractions, particularly Laura Brettell, Mårten Duvetorp, Juan Galindo, Anne-Lise
Liabot, Mark Ravinet, Irena Senčić and Zuzanna Zagrodzka. We are also grateful to
Edinburgh Genomics for library preparation and sequencing, to Stuart Baird and Mark
Ravinet for helpful discussions, and to three anonymous reviewers for their constructive
comments. This work was supported by the Natural Environment Research Council (NE/K014021/1),
the European Research Council (AdG-693030-BARRIERS), Swedish Research Councils Formas
and Vetenskapsrådet through a Linnaeus grant to the Centre for Marine Evolutionary
Biology (217-2008-1719), the European Regional Development Fund (POCI-01-0145-FEDER-030628),
and the Fundação para a iência e a Tecnologia,\r\nPortugal (PTDC/BIA-EVL/\r\n30628/2017).
A.M.W. and R.F. were\r\nfunded by the European Union’s Horizon 2020 research and
innovation\r\nprogramme under Marie Skłodowska-Curie\r\ngrant agreements\r\nno.
754411/797747 and no. 706376, respectively."
article_processing_charge: No
article_type: original
author:
- first_name: Anja M
full_name: Westram, Anja M
id: 3C147470-F248-11E8-B48F-1D18A9856A87
last_name: Westram
orcid: 0000-0003-1050-4969
- first_name: Rui
full_name: Faria, Rui
last_name: Faria
- first_name: Kerstin
full_name: Johannesson, Kerstin
last_name: Johannesson
- first_name: Roger
full_name: Butlin, Roger
last_name: Butlin
citation:
ama: Westram AM, Faria R, Johannesson K, Butlin R. Using replicate hybrid zones
to understand the genomic basis of adaptive divergence. Molecular Ecology.
2021;30(15):3797-3814. doi:10.1111/mec.15861
apa: Westram, A. M., Faria, R., Johannesson, K., & Butlin, R. (2021). Using
replicate hybrid zones to understand the genomic basis of adaptive divergence.
Molecular Ecology. Wiley. https://doi.org/10.1111/mec.15861
chicago: Westram, Anja M, Rui Faria, Kerstin Johannesson, and Roger Butlin. “Using
Replicate Hybrid Zones to Understand the Genomic Basis of Adaptive Divergence.”
Molecular Ecology. Wiley, 2021. https://doi.org/10.1111/mec.15861.
ieee: A. M. Westram, R. Faria, K. Johannesson, and R. Butlin, “Using replicate hybrid
zones to understand the genomic basis of adaptive divergence,” Molecular Ecology,
vol. 30, no. 15. Wiley, pp. 3797–3814, 2021.
ista: Westram AM, Faria R, Johannesson K, Butlin R. 2021. Using replicate hybrid
zones to understand the genomic basis of adaptive divergence. Molecular Ecology.
30(15), 3797–3814.
mla: Westram, Anja M., et al. “Using Replicate Hybrid Zones to Understand the Genomic
Basis of Adaptive Divergence.” Molecular Ecology, vol. 30, no. 15, Wiley,
2021, pp. 3797–814, doi:10.1111/mec.15861.
short: A.M. Westram, R. Faria, K. Johannesson, R. Butlin, Molecular Ecology 30 (2021)
3797–3814.
date_created: 2022-03-08T11:28:32Z
date_published: 2021-08-01T00:00:00Z
date_updated: 2023-09-05T16:02:19Z
day: '01'
ddc:
- '570'
department:
- _id: BeVi
doi: 10.1111/mec.15861
external_id:
isi:
- '000669439700001'
pmid:
- '33638231'
file:
- access_level: open_access
checksum: d5611f243ceb63a0e091d6662ebd9cda
content_type: application/pdf
creator: dernst
date_created: 2022-03-08T11:31:30Z
date_updated: 2022-03-08T11:31:30Z
file_id: '10839'
file_name: 2021_MolecularEcology_Westram.pdf
file_size: 1726548
relation: main_file
success: 1
file_date_updated: 2022-03-08T11:31:30Z
has_accepted_license: '1'
intvolume: ' 30'
isi: 1
issue: '15'
keyword:
- Genetics
- Ecology
- Evolution
- Behavior and Systematics
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: 3797-3814
pmid: 1
publication: Molecular Ecology
publication_identifier:
eissn:
- 1365-294X
issn:
- 0962-1083
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Using replicate hybrid zones to understand the genomic basis of adaptive divergence
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 30
year: '2021'
...
---
_id: '9288'
abstract:
- lang: eng
text: "• The phenylpropanoid pathway serves a central role in plant metabolism,
providing numerous compounds involved in diverse physiological processes. Most
carbon entering the pathway is incorporated into lignin. Although several phenylpropanoid
pathway mutants show seedling growth arrest, the role for lignin in seedling growth
and development is unexplored.\r\n• We use complementary pharmacological and genetic
approaches to block CINNAMATE‐4‐HYDROXYLASE (C4H) functionality in Arabidopsis
seedlings and a set of molecular and biochemical techniques to investigate the
underlying phenotypes.\r\n• Blocking C4H resulted in reduced lateral rooting and
increased adventitious rooting apically in the hypocotyl. These phenotypes coincided
with an inhibition in auxin transport. The upstream accumulation in cis‐cinnamic
acid was found to likely cause polar auxin transport inhibition. Conversely, a
downstream depletion in lignin perturbed phloem‐mediated auxin transport. Restoring
lignin deposition effectively reestablished phloem transport and, accordingly,
auxin homeostasis.\r\n• Our results show that the accumulation of bioactive intermediates
and depletion in lignin jointly cause the aberrant phenotypes upon blocking C4H,
and demonstrate that proper deposition of lignin is essential for the establishment
of auxin distribution in seedlings. Our data position the phenylpropanoid pathway
and lignin in a new physiological framework, consolidating their importance in
plant growth and development."
article_processing_charge: No
article_type: original
author:
- first_name: I
full_name: El Houari, I
last_name: El Houari
- first_name: C
full_name: Van Beirs, C
last_name: Van Beirs
- first_name: HE
full_name: Arents, HE
last_name: Arents
- first_name: Huibin
full_name: Han, Huibin
id: 31435098-F248-11E8-B48F-1D18A9856A87
last_name: Han
- first_name: A
full_name: Chanoca, A
last_name: Chanoca
- first_name: D
full_name: Opdenacker, D
last_name: Opdenacker
- first_name: J
full_name: Pollier, J
last_name: Pollier
- first_name: V
full_name: Storme, V
last_name: Storme
- first_name: W
full_name: Steenackers, W
last_name: Steenackers
- first_name: M
full_name: Quareshy, M
last_name: Quareshy
- first_name: R
full_name: Napier, R
last_name: Napier
- first_name: T
full_name: Beeckman, T
last_name: Beeckman
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: B
full_name: De Rybel, B
last_name: De Rybel
- first_name: W
full_name: Boerjan, W
last_name: Boerjan
- first_name: B
full_name: Vanholme, B
last_name: Vanholme
citation:
ama: El Houari I, Van Beirs C, Arents H, et al. Seedling developmental defects upon
blocking CINNAMATE-4-HYDROXYLASE are caused by perturbations in auxin transport.
New Phytologist. 2021;230(6):2275-2291. doi:10.1111/nph.17349
apa: El Houari, I., Van Beirs, C., Arents, H., Han, H., Chanoca, A., Opdenacker,
D., … Vanholme, B. (2021). Seedling developmental defects upon blocking CINNAMATE-4-HYDROXYLASE
are caused by perturbations in auxin transport. New Phytologist. Wiley.
https://doi.org/10.1111/nph.17349
chicago: El Houari, I, C Van Beirs, HE Arents, Huibin Han, A Chanoca, D Opdenacker,
J Pollier, et al. “Seedling Developmental Defects upon Blocking CINNAMATE-4-HYDROXYLASE
Are Caused by Perturbations in Auxin Transport.” New Phytologist. Wiley,
2021. https://doi.org/10.1111/nph.17349.
ieee: I. El Houari et al., “Seedling developmental defects upon blocking
CINNAMATE-4-HYDROXYLASE are caused by perturbations in auxin transport,” New
Phytologist, vol. 230, no. 6. Wiley, pp. 2275–2291, 2021.
ista: El Houari I, Van Beirs C, Arents H, Han H, Chanoca A, Opdenacker D, Pollier
J, Storme V, Steenackers W, Quareshy M, Napier R, Beeckman T, Friml J, De Rybel
B, Boerjan W, Vanholme B. 2021. Seedling developmental defects upon blocking CINNAMATE-4-HYDROXYLASE
are caused by perturbations in auxin transport. New Phytologist. 230(6), 2275–2291.
mla: El Houari, I., et al. “Seedling Developmental Defects upon Blocking CINNAMATE-4-HYDROXYLASE
Are Caused by Perturbations in Auxin Transport.” New Phytologist, vol.
230, no. 6, Wiley, 2021, pp. 2275–91, doi:10.1111/nph.17349.
short: I. El Houari, C. Van Beirs, H. Arents, H. Han, A. Chanoca, D. Opdenacker,
J. Pollier, V. Storme, W. Steenackers, M. Quareshy, R. Napier, T. Beeckman, J.
Friml, B. De Rybel, W. Boerjan, B. Vanholme, New Phytologist 230 (2021) 2275–2291.
date_created: 2021-03-26T12:09:01Z
date_published: 2021-03-17T00:00:00Z
date_updated: 2023-09-05T15:46:55Z
day: '17'
department:
- _id: JiFr
doi: 10.1111/nph.17349
external_id:
isi:
- '000639552400001'
pmid:
- '33728703'
intvolume: ' 230'
isi: 1
issue: '6'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://biblio.ugent.be/publication/8703799/file/8703800.pdf
month: '03'
oa: 1
oa_version: Published Version
page: 2275-2291
pmid: 1
publication: New Phytologist
publication_identifier:
eissn:
- 1469-8137
issn:
- 0028-646x
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Seedling developmental defects upon blocking CINNAMATE-4-HYDROXYLASE are caused
by perturbations in auxin transport
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 230
year: '2021'
...
---
_id: '10836'
acknowledgement: This work was supported by the Austrian Science Fund (FWF) grants MCCA W1248-B30 and SFB F4606-B28 to EJJ. CP received a short-term
research fellowship of the European Federation of Immunological Societies (EFIS-IL) for a research visit at Biocruces Bizkaia Health Research Institute, Barakaldo, Spain. VKK received an EFIS-IL short-term research fellowship for a research visit at King’s College London. The
research was funded by the National Institute for Health Research (NIHR) Biomedical
Research Centre (BRC) based at Guy's and St Thomas' NHS Foundation Trust and King's
College London (IS-BRC-1215-20006) (SNK). The authors acknowledge support by the Medical Research Council
(MR/L023091/1) (SNK); Breast Cancer Now (147; KCL-BCN-Q3)(SNK); Cancer Research
UK (C30122/A11527; C30122/A15774) (SNK); Cancer Research UK King's Health Partners Centre at King's College London (C604/A25135) (SNK); CRUK/NIHR in England/DoH for Scotland, Wales and Northern Ireland Experimental Cancer Medicine Centre (C10355/A15587) (SNK). The views expressed are those of the author(s) and not necessarily those of the NHS, the NIHR or the Department of Health. Additionally, this work was funded by Instituto de Salud Carlos III through the project "PI16/01223" (Co-funded by European
Regional Development Fund; “A way to make Europe”) to FB and by the Department of Health, Basque Government through the project
“2019111031” to OZ. OZ is recipient of a Sara Borrell 2017 post-doctoral contract
“CD17/00128” funded by Instituto de Salud Carlos III (Co-funded by European Social
Fund; “Investing in your future”).
article_processing_charge: No
article_type: letter_note
author:
- first_name: Christina L.
full_name: Pranger, Christina L.
last_name: Pranger
- first_name: Judit
full_name: Fazekas-Singer, Judit
id: 36432834-F248-11E8-B48F-1D18A9856A87
last_name: Fazekas-Singer
orcid: 0000-0002-8777-3502
- first_name: Verena K.
full_name: Köhler, Verena K.
last_name: Köhler
- first_name: Isabella
full_name: Pali‐Schöll, Isabella
last_name: Pali‐Schöll
- first_name: Alessandro
full_name: Fiocchi, Alessandro
last_name: Fiocchi
- first_name: Sophia N.
full_name: Karagiannis, Sophia N.
last_name: Karagiannis
- first_name: Olatz
full_name: Zenarruzabeitia, Olatz
last_name: Zenarruzabeitia
- first_name: Francisco
full_name: Borrego, Francisco
last_name: Borrego
- first_name: Erika
full_name: Jensen‐Jarolim, Erika
last_name: Jensen‐Jarolim
citation:
ama: 'Pranger CL, Singer J, Köhler VK, et al. PIPE‐cloned human IgE and IgG4 antibodies:
New tools for investigating cow’s milk allergy and tolerance. Allergy.
2021;76(5):1553-1556. doi:10.1111/all.14604'
apa: 'Pranger, C. L., Singer, J., Köhler, V. K., Pali‐Schöll, I., Fiocchi, A., Karagiannis,
S. N., … Jensen‐Jarolim, E. (2021). PIPE‐cloned human IgE and IgG4 antibodies:
New tools for investigating cow’s milk allergy and tolerance. Allergy.
Wiley. https://doi.org/10.1111/all.14604'
chicago: 'Pranger, Christina L., Judit Singer, Verena K. Köhler, Isabella Pali‐Schöll,
Alessandro Fiocchi, Sophia N. Karagiannis, Olatz Zenarruzabeitia, Francisco Borrego,
and Erika Jensen‐Jarolim. “PIPE‐cloned Human IgE and IgG4 Antibodies: New Tools
for Investigating Cow’s Milk Allergy and Tolerance.” Allergy. Wiley, 2021.
https://doi.org/10.1111/all.14604.'
ieee: 'C. L. Pranger et al., “PIPE‐cloned human IgE and IgG4 antibodies:
New tools for investigating cow’s milk allergy and tolerance,” Allergy,
vol. 76, no. 5. Wiley, pp. 1553–1556, 2021.'
ista: 'Pranger CL, Singer J, Köhler VK, Pali‐Schöll I, Fiocchi A, Karagiannis SN,
Zenarruzabeitia O, Borrego F, Jensen‐Jarolim E. 2021. PIPE‐cloned human IgE and
IgG4 antibodies: New tools for investigating cow’s milk allergy and tolerance.
Allergy. 76(5), 1553–1556.'
mla: 'Pranger, Christina L., et al. “PIPE‐cloned Human IgE and IgG4 Antibodies:
New Tools for Investigating Cow’s Milk Allergy and Tolerance.” Allergy,
vol. 76, no. 5, Wiley, 2021, pp. 1553–56, doi:10.1111/all.14604.'
short: C.L. Pranger, J. Singer, V.K. Köhler, I. Pali‐Schöll, A. Fiocchi, S.N. Karagiannis,
O. Zenarruzabeitia, F. Borrego, E. Jensen‐Jarolim, Allergy 76 (2021) 1553–1556.
date_created: 2022-03-08T11:19:05Z
date_published: 2021-05-01T00:00:00Z
date_updated: 2023-09-05T15:58:53Z
day: '01'
ddc:
- '570'
department:
- _id: Bio
doi: 10.1111/all.14604
external_id:
isi:
- '000577708800001'
pmid:
- '32990982'
file:
- access_level: open_access
checksum: 9526f9554112fc027c9f7fa540c488cd
content_type: application/pdf
creator: dernst
date_created: 2022-03-08T11:23:16Z
date_updated: 2022-03-08T11:23:16Z
file_id: '10837'
file_name: 2021_Allergy_Pranger.pdf
file_size: 626081
relation: main_file
success: 1
file_date_updated: 2022-03-08T11:23:16Z
has_accepted_license: '1'
intvolume: ' 76'
isi: 1
issue: '5'
keyword:
- Immunology
- Immunology and Allergy
language:
- iso: eng
month: '05'
oa: 1
oa_version: Published Version
page: 1553-1556
pmid: 1
publication: Allergy
publication_identifier:
eissn:
- 1398-9995
issn:
- 0105-4538
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: 'PIPE‐cloned human IgE and IgG4 antibodies: New tools for investigating cow''s
milk allergy and tolerance'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 76
year: '2021'
...
---
_id: '8608'
abstract:
- lang: eng
text: To adapt to the diverse array of biotic and abiotic cues, plants have evolved
sophisticated mechanisms to sense changes in environmental conditions and modulate
their growth. Growth-promoting hormones and defence signalling fine tune plant
development antagonistically. During host-pathogen interactions, this defence-growth
trade-off is mediated by the counteractive effects of the defence hormone salicylic
acid (SA) and the growth hormone auxin. Here we revealed an underlying mechanism
of SA regulating auxin signalling by constraining the plasma membrane dynamics
of PIN2 auxin efflux transporter in Arabidopsis thaliana roots. The lateral diffusion
of PIN2 proteins is constrained by SA signalling, during which PIN2 proteins are
condensed into hyperclusters depending on REM1.2-mediated nanodomain compartmentalisation.
Furthermore, membrane nanodomain compartmentalisation by SA or Remorin (REM) assembly
significantly suppressed clathrin-mediated endocytosis. Consequently, SA-induced
heterogeneous surface condensation disrupted asymmetric auxin distribution and
the resultant gravitropic response. Our results demonstrated a defence-growth
trade-off mechanism by which SA signalling crosstalked with auxin transport by
concentrating membrane-resident PIN2 into heterogeneous compartments.
acknowledgement: This work was supported by the National Key Research andDevelopment
Programme of China (2017YFA0506100), theNational Natural Science Foundation of China
(31870170 and31701168), and the Fok Ying Tung Education Foundation(161027) to XC;
NTU startup grant (M4081533) and NIM/01/2016 (NTU, Singapore) to YM. We thank Lei
Shi andZhongquan Lin for microscopy assistance.
article_processing_charge: No
article_type: original
author:
- first_name: M
full_name: Ke, M
last_name: Ke
- first_name: Z
full_name: Ma, Z
last_name: Ma
- first_name: D
full_name: Wang, D
last_name: Wang
- first_name: Y
full_name: Sun, Y
last_name: Sun
- first_name: C
full_name: Wen, C
last_name: Wen
- first_name: D
full_name: Huang, D
last_name: Huang
- first_name: Z
full_name: Chen, Z
last_name: Chen
- first_name: L
full_name: Yang, L
last_name: Yang
- first_name: Shutang
full_name: Tan, Shutang
id: 2DE75584-F248-11E8-B48F-1D18A9856A87
last_name: Tan
orcid: 0000-0002-0471-8285
- first_name: R
full_name: Li, R
last_name: Li
- first_name: Jiří
full_name: Friml, Jiří
id: 4159519E-F248-11E8-B48F-1D18A9856A87
last_name: Friml
orcid: 0000-0002-8302-7596
- first_name: Y
full_name: Miao, Y
last_name: Miao
- first_name: X
full_name: Chen, X
last_name: Chen
citation:
ama: Ke M, Ma Z, Wang D, et al. Salicylic acid regulates PIN2 auxin transporter
hyper-clustering and root gravitropic growth via Remorin-dependent lipid nanodomain
organization in Arabidopsis thaliana. New Phytologist. 2021;229(2):963-978.
doi:10.1111/nph.16915
apa: Ke, M., Ma, Z., Wang, D., Sun, Y., Wen, C., Huang, D., … Chen, X. (2021). Salicylic
acid regulates PIN2 auxin transporter hyper-clustering and root gravitropic growth
via Remorin-dependent lipid nanodomain organization in Arabidopsis thaliana. New
Phytologist. Wiley. https://doi.org/10.1111/nph.16915
chicago: Ke, M, Z Ma, D Wang, Y Sun, C Wen, D Huang, Z Chen, et al. “Salicylic Acid
Regulates PIN2 Auxin Transporter Hyper-Clustering and Root Gravitropic Growth
via Remorin-Dependent Lipid Nanodomain Organization in Arabidopsis Thaliana.”
New Phytologist. Wiley, 2021. https://doi.org/10.1111/nph.16915.
ieee: M. Ke et al., “Salicylic acid regulates PIN2 auxin transporter hyper-clustering
and root gravitropic growth via Remorin-dependent lipid nanodomain organization
in Arabidopsis thaliana,” New Phytologist, vol. 229, no. 2. Wiley, pp.
963–978, 2021.
ista: Ke M, Ma Z, Wang D, Sun Y, Wen C, Huang D, Chen Z, Yang L, Tan S, Li R, Friml
J, Miao Y, Chen X. 2021. Salicylic acid regulates PIN2 auxin transporter hyper-clustering
and root gravitropic growth via Remorin-dependent lipid nanodomain organization
in Arabidopsis thaliana. New Phytologist. 229(2), 963–978.
mla: Ke, M., et al. “Salicylic Acid Regulates PIN2 Auxin Transporter Hyper-Clustering
and Root Gravitropic Growth via Remorin-Dependent Lipid Nanodomain Organization
in Arabidopsis Thaliana.” New Phytologist, vol. 229, no. 2, Wiley, 2021,
pp. 963–78, doi:10.1111/nph.16915.
short: M. Ke, Z. Ma, D. Wang, Y. Sun, C. Wen, D. Huang, Z. Chen, L. Yang, S. Tan,
R. Li, J. Friml, Y. Miao, X. Chen, New Phytologist 229 (2021) 963–978.
date_created: 2020-10-05T12:45:36Z
date_published: 2021-01-01T00:00:00Z
date_updated: 2023-09-05T16:06:24Z
day: '01'
ddc:
- '580'
department:
- _id: JiFr
doi: 10.1111/nph.16915
external_id:
isi:
- '000573568000001'
pmid:
- '32901934'
file:
- access_level: open_access
checksum: d36b6a8c6fafab66264e0d27114dae63
content_type: application/pdf
creator: dernst
date_created: 2021-02-04T09:53:16Z
date_updated: 2021-02-04T09:53:16Z
file_id: '9085'
file_name: 2021_NewPhytologist_Ke.pdf
file_size: 3674502
relation: main_file
success: 1
file_date_updated: 2021-02-04T09:53:16Z
has_accepted_license: '1'
intvolume: ' 229'
isi: 1
issue: '2'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: 963-978
pmid: 1
publication: New Phytologist
publication_identifier:
eissn:
- 1469-8137
issn:
- 0028-646x
publication_status: published
publisher: Wiley
quality_controlled: '1'
scopus_import: '1'
status: public
title: Salicylic acid regulates PIN2 auxin transporter hyper-clustering and root gravitropic
growth via Remorin-dependent lipid nanodomain organization in Arabidopsis thaliana
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 229
year: '2021'
...
---
_id: '7900'
abstract:
- lang: eng
text: Hartree–Fock theory has been justified as a mean-field approximation for fermionic
systems. However, it suffers from some defects in predicting physical properties,
making necessary a theory of quantum correlations. Recently, bosonization of many-body
correlations has been rigorously justified as an upper bound on the correlation
energy at high density with weak interactions. We review the bosonic approximation,
deriving an effective Hamiltonian. We then show that for systems with Coulomb
interaction this effective theory predicts collective excitations (plasmons) in
accordance with the random phase approximation of Bohm and Pines, and with experimental
observation.
article_number: '2060009'
article_processing_charge: No
article_type: original
author:
- first_name: Niels P
full_name: Benedikter, Niels P
id: 3DE6C32A-F248-11E8-B48F-1D18A9856A87
last_name: Benedikter
orcid: 0000-0002-1071-6091
citation:
ama: Benedikter NP. Bosonic collective excitations in Fermi gases. Reviews in
Mathematical Physics. 2021;33(1). doi:10.1142/s0129055x20600090
apa: Benedikter, N. P. (2021). Bosonic collective excitations in Fermi gases. Reviews
in Mathematical Physics. World Scientific. https://doi.org/10.1142/s0129055x20600090
chicago: Benedikter, Niels P. “Bosonic Collective Excitations in Fermi Gases.” Reviews
in Mathematical Physics. World Scientific, 2021. https://doi.org/10.1142/s0129055x20600090.
ieee: N. P. Benedikter, “Bosonic collective excitations in Fermi gases,” Reviews
in Mathematical Physics, vol. 33, no. 1. World Scientific, 2021.
ista: Benedikter NP. 2021. Bosonic collective excitations in Fermi gases. Reviews
in Mathematical Physics. 33(1), 2060009.
mla: Benedikter, Niels P. “Bosonic Collective Excitations in Fermi Gases.” Reviews
in Mathematical Physics, vol. 33, no. 1, 2060009, World Scientific, 2021,
doi:10.1142/s0129055x20600090.
short: N.P. Benedikter, Reviews in Mathematical Physics 33 (2021).
date_created: 2020-05-28T16:47:55Z
date_published: 2021-01-01T00:00:00Z
date_updated: 2023-09-05T16:07:40Z
day: '01'
department:
- _id: RoSe
doi: 10.1142/s0129055x20600090
ec_funded: 1
external_id:
arxiv:
- '1910.08190'
isi:
- '000613313200010'
intvolume: ' 33'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1910.08190
month: '01'
oa: 1
oa_version: Preprint
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '694227'
name: Analysis of quantum many-body systems
publication: Reviews in Mathematical Physics
publication_identifier:
eissn:
- 1793-6659
issn:
- 0129-055X
publication_status: published
publisher: World Scientific
quality_controlled: '1'
scopus_import: '1'
status: public
title: Bosonic collective excitations in Fermi gases
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 33
year: '2021'
...
---
_id: '10852'
abstract:
- lang: eng
text: ' We review old and new results on the Fröhlich polaron model. The discussion
includes the validity of the (classical) Pekar approximation in the strong coupling
limit, quantum corrections to this limit, as well as the divergence of the effective
polaron mass.'
acknowledgement: This work was supported by the European Research Council (ERC) under
the Euro-pean Union’s Horizon 2020 research and innovation programme (grant agreementNo.
694227).
article_number: '2060012'
article_processing_charge: No
article_type: original
author:
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Seiringer R. The polaron at strong coupling. Reviews in Mathematical Physics.
2021;33(01). doi:10.1142/s0129055x20600120
apa: Seiringer, R. (2021). The polaron at strong coupling. Reviews in Mathematical
Physics. World Scientific Publishing. https://doi.org/10.1142/s0129055x20600120
chicago: Seiringer, Robert. “The Polaron at Strong Coupling.” Reviews in Mathematical
Physics. World Scientific Publishing, 2021. https://doi.org/10.1142/s0129055x20600120.
ieee: R. Seiringer, “The polaron at strong coupling,” Reviews in Mathematical
Physics, vol. 33, no. 01. World Scientific Publishing, 2021.
ista: Seiringer R. 2021. The polaron at strong coupling. Reviews in Mathematical
Physics. 33(01), 2060012.
mla: Seiringer, Robert. “The Polaron at Strong Coupling.” Reviews in Mathematical
Physics, vol. 33, no. 01, 2060012, World Scientific Publishing, 2021, doi:10.1142/s0129055x20600120.
short: R. Seiringer, Reviews in Mathematical Physics 33 (2021).
date_created: 2022-03-18T08:11:34Z
date_published: 2021-02-01T00:00:00Z
date_updated: 2023-09-05T16:08:02Z
day: '01'
department:
- _id: RoSe
doi: 10.1142/s0129055x20600120
ec_funded: 1
external_id:
arxiv:
- '1912.12509'
isi:
- '000613313200013'
intvolume: ' 33'
isi: 1
issue: '01'
keyword:
- Mathematical Physics
- Statistical and Nonlinear Physics
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1912.12509
month: '02'
oa: 1
oa_version: Preprint
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '694227'
name: Analysis of quantum many-body systems
publication: Reviews in Mathematical Physics
publication_identifier:
eissn:
- 1793-6659
issn:
- 0129-055X
publication_status: published
publisher: World Scientific Publishing
quality_controlled: '1'
scopus_import: '1'
status: public
title: The polaron at strong coupling
type: journal_article
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 33
year: '2021'
...
---
_id: '9056'
abstract:
- lang: eng
text: "In this thesis we study persistence of multi-covers of Euclidean balls and
the geometric structures underlying their computation, in particular Delaunay
mosaics and Voronoi tessellations. The k-fold cover for some discrete input point
set consists of the space where at least k balls of radius r around the input
points overlap. Persistence is a notion that captures, in some sense, the topology
of the shape underlying the input. While persistence is usually computed for the
union of balls, the k-fold cover is of interest as it captures local density,\r\nand
thus might approximate the shape of the input better if the input data is noisy.
To compute persistence of these k-fold covers, we need a discretization that is
provided by higher-order Delaunay mosaics. We present and implement a simple and
efficient algorithm for the computation of higher-order Delaunay mosaics, and
use it to give experimental results for their combinatorial properties. The algorithm
makes use of a new geometric structure, the rhomboid tiling. It contains the higher-order
Delaunay mosaics as slices, and by introducing a filtration\r\nfunction on the
tiling, we also obtain higher-order α-shapes as slices. These allow us to compute
persistence of the multi-covers for varying radius r; the computation for varying
k is less straight-foward and involves the rhomboid tiling directly. We apply
our algorithms to experimental sphere packings to shed light on their structural
properties. Finally, inspired by periodic structures in packings and materials,
we propose and implement an algorithm for periodic Delaunay triangulations to
be integrated into the Computational Geometry Algorithms Library (CGAL), and discuss
the implications on persistence for periodic data sets."
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Georg F
full_name: Osang, Georg F
id: 464B40D6-F248-11E8-B48F-1D18A9856A87
last_name: Osang
orcid: 0000-0002-8882-5116
citation:
ama: Osang GF. Multi-cover persistence and Delaunay mosaics. 2021. doi:10.15479/AT:ISTA:9056
apa: Osang, G. F. (2021). Multi-cover persistence and Delaunay mosaics. Institute
of Science and Technology Austria, Klosterneuburg. https://doi.org/10.15479/AT:ISTA:9056
chicago: Osang, Georg F. “Multi-Cover Persistence and Delaunay Mosaics.” Institute
of Science and Technology Austria, 2021. https://doi.org/10.15479/AT:ISTA:9056.
ieee: G. F. Osang, “Multi-cover persistence and Delaunay mosaics,” Institute of
Science and Technology Austria, Klosterneuburg, 2021.
ista: 'Osang GF. 2021. Multi-cover persistence and Delaunay mosaics. Klosterneuburg:
Institute of Science and Technology Austria.'
mla: Osang, Georg F. Multi-Cover Persistence and Delaunay Mosaics. Institute
of Science and Technology Austria, 2021, doi:10.15479/AT:ISTA:9056.
short: G.F. Osang, Multi-Cover Persistence and Delaunay Mosaics, Institute of Science
and Technology Austria, 2021.
date_created: 2021-02-02T14:11:06Z
date_published: 2021-02-01T00:00:00Z
date_updated: 2023-09-07T13:29:01Z
day: '01'
ddc:
- '006'
- '514'
- '516'
degree_awarded: PhD
department:
- _id: HeEd
- _id: GradSch
doi: 10.15479/AT:ISTA:9056
file:
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creator: patrickd
date_created: 2021-02-02T14:09:25Z
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file_id: '9063'
file_name: thesis_source.zip
file_size: 13446994
relation: source_file
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checksum: 9cc8af266579a464385bbe2aff6af606
content_type: application/pdf
creator: patrickd
date_created: 2021-02-02T14:09:18Z
date_updated: 2021-02-02T14:09:18Z
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file_name: thesis_pdfA2b.pdf
file_size: 5210329
relation: main_file
success: 1
file_date_updated: 2021-02-03T10:37:28Z
has_accepted_license: '1'
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
page: '134'
place: Klosterneuburg
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '187'
relation: part_of_dissertation
status: public
- id: '8703'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
title: Multi-cover persistence and Delaunay mosaics
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2021'
...
---
_id: '9022'
abstract:
- lang: eng
text: "In the first part of the thesis we consider Hermitian random matrices. Firstly,
we consider sample covariance matrices XX∗ with X having independent identically
distributed (i.i.d.) centred entries. We prove a Central Limit Theorem for differences
of linear statistics of XX∗ and its minor after removing the first column of X.
Secondly, we consider Wigner-type matrices and prove that the eigenvalue statistics
near cusp singularities of the limiting density of states are universal and that
they form a Pearcey process. Since the limiting eigenvalue distribution admits
only square root (edge) and cubic root (cusp) singularities, this concludes the
third and last remaining case of the Wigner-Dyson-Mehta universality conjecture.
The main technical ingredients are an optimal local law at the cusp, and the proof
of the fast relaxation to equilibrium of the Dyson Brownian motion in the cusp
regime.\r\nIn the second part we consider non-Hermitian matrices X with centred
i.i.d. entries. We normalise the entries of X to have variance N −1. It is well
known that the empirical eigenvalue density converges to the uniform distribution
on the unit disk (circular law). In the first project, we prove universality of
the local eigenvalue statistics close to the edge of the spectrum. This is the
non-Hermitian analogue of the TracyWidom universality at the Hermitian edge. Technically
we analyse the evolution of the spectral distribution of X along the Ornstein-Uhlenbeck
flow for very long time\r\n(up to t = +∞). In the second project, we consider
linear statistics of eigenvalues for macroscopic test functions f in the Sobolev
space H2+ϵ and prove their convergence to the projection of the Gaussian Free
Field on the unit disk. We prove this result for non-Hermitian matrices with real
or complex entries. The main technical ingredients are: (i) local law for products
of two resolvents at different spectral parameters, (ii) analysis of correlated
Dyson Brownian motions.\r\nIn the third and final part we discuss the mathematically
rigorous application of supersymmetric techniques (SUSY ) to give a lower tail
estimate of the lowest singular value of X − z, with z ∈ C. More precisely, we
use superbosonisation formula to give an integral representation of the resolvent
of (X − z)(X − z)∗ which reduces to two and three contour integrals in the complex
and real case, respectively. The rigorous analysis of these integrals is quite
challenging since simple saddle point analysis cannot be applied (the main contribution
comes from a non-trivial manifold). Our result\r\nimproves classical smoothing
inequalities in the regime |z| ≈ 1; this result is essential to prove edge universality
for i.i.d. non-Hermitian matrices."
acknowledgement: I gratefully acknowledge the financial support from the European
Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie
Grant Agreement No. 665385 and my advisor’s ERC Advanced Grant No. 338804.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Giorgio
full_name: Cipolloni, Giorgio
id: 42198EFA-F248-11E8-B48F-1D18A9856A87
last_name: Cipolloni
orcid: 0000-0002-4901-7992
citation:
ama: Cipolloni G. Fluctuations in the spectrum of random matrices. 2021. doi:10.15479/AT:ISTA:9022
apa: Cipolloni, G. (2021). Fluctuations in the spectrum of random matrices.
Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:9022
chicago: Cipolloni, Giorgio. “Fluctuations in the Spectrum of Random Matrices.”
Institute of Science and Technology Austria, 2021. https://doi.org/10.15479/AT:ISTA:9022.
ieee: G. Cipolloni, “Fluctuations in the spectrum of random matrices,” Institute
of Science and Technology Austria, 2021.
ista: Cipolloni G. 2021. Fluctuations in the spectrum of random matrices. Institute
of Science and Technology Austria.
mla: Cipolloni, Giorgio. Fluctuations in the Spectrum of Random Matrices.
Institute of Science and Technology Austria, 2021, doi:10.15479/AT:ISTA:9022.
short: G. Cipolloni, Fluctuations in the Spectrum of Random Matrices, Institute
of Science and Technology Austria, 2021.
date_created: 2021-01-21T18:16:54Z
date_published: 2021-01-25T00:00:00Z
date_updated: 2023-09-07T13:29:32Z
day: '25'
ddc:
- '510'
degree_awarded: PhD
department:
- _id: GradSch
- _id: LaEr
doi: 10.15479/AT:ISTA:9022
ec_funded: 1
file:
- access_level: open_access
checksum: 5a93658a5f19478372523ee232887e2b
content_type: application/pdf
creator: gcipollo
date_created: 2021-01-25T14:19:03Z
date_updated: 2021-01-25T14:19:03Z
file_id: '9043'
file_name: thesis.pdf
file_size: 4127796
relation: main_file
success: 1
- access_level: closed
checksum: e8270eddfe6a988e92a53c88d1d19b8c
content_type: application/zip
creator: gcipollo
date_created: 2021-01-25T14:19:10Z
date_updated: 2021-01-25T14:19:10Z
file_id: '9044'
file_name: Thesis_files.zip
file_size: 12775206
relation: source_file
file_date_updated: 2021-01-25T14:19:10Z
has_accepted_license: '1'
language:
- iso: eng
month: '01'
oa: 1
oa_version: Published Version
page: '380'
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '665385'
name: International IST Doctoral Program
- _id: 258DCDE6-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '338804'
name: Random matrices, universality and disordered quantum systems
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
status: public
supervisor:
- first_name: László
full_name: Erdös, László
id: 4DBD5372-F248-11E8-B48F-1D18A9856A87
last_name: Erdös
orcid: 0000-0001-5366-9603
title: Fluctuations in the spectrum of random matrices
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2021'
...
---
_id: '9416'
abstract:
- lang: eng
text: 'We study the inductive bias of two-layer ReLU networks trained by gradient
flow. We identify a class of easy-to-learn (`orthogonally separable'') datasets,
and characterise the solution that ReLU networks trained on such datasets converge
to. Irrespective of network width, the solution turns out to be a combination
of two max-margin classifiers: one corresponding to the positive data subset and
one corresponding to the negative data subset. The proof is based on the recently
introduced concept of extremal sectors, for which we prove a number of properties
in the context of orthogonal separability. In particular, we prove stationarity
of activation patterns from some time onwards, which enables a reduction of the
ReLU network to an ensemble of linear subnetworks.'
article_processing_charge: No
author:
- first_name: Phuong
full_name: Bui Thi Mai, Phuong
id: 3EC6EE64-F248-11E8-B48F-1D18A9856A87
last_name: Bui Thi Mai
- first_name: Christoph
full_name: Lampert, Christoph
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
citation:
ama: 'Phuong M, Lampert C. The inductive bias of ReLU networks on orthogonally separable
data. In: 9th International Conference on Learning Representations. ; 2021.'
apa: Phuong, M., & Lampert, C. (2021). The inductive bias of ReLU networks on
orthogonally separable data. In 9th International Conference on Learning Representations.
Virtual.
chicago: Phuong, Mary, and Christoph Lampert. “The Inductive Bias of ReLU Networks
on Orthogonally Separable Data.” In 9th International Conference on Learning
Representations, 2021.
ieee: M. Phuong and C. Lampert, “The inductive bias of ReLU networks on orthogonally
separable data,” in 9th International Conference on Learning Representations,
Virtual, 2021.
ista: 'Phuong M, Lampert C. 2021. The inductive bias of ReLU networks on orthogonally
separable data. 9th International Conference on Learning Representations. ICLR:
International Conference on Learning Representations.'
mla: Phuong, Mary, and Christoph Lampert. “The Inductive Bias of ReLU Networks on
Orthogonally Separable Data.” 9th International Conference on Learning Representations,
2021.
short: M. Phuong, C. Lampert, in:, 9th International Conference on Learning Representations,
2021.
conference:
end_date: 2021-05-07
location: Virtual
name: ' ICLR: International Conference on Learning Representations'
start_date: 2021-05-03
date_created: 2021-05-24T11:16:46Z
date_published: 2021-05-01T00:00:00Z
date_updated: 2023-09-07T13:29:50Z
day: '01'
ddc:
- '000'
department:
- _id: GradSch
- _id: ChLa
file:
- access_level: open_access
checksum: f34ff17017527db5ba6927f817bdd125
content_type: application/pdf
creator: bphuong
date_created: 2021-05-24T11:15:57Z
date_updated: 2021-05-24T11:15:57Z
file_id: '9417'
file_name: iclr2021_conference.pdf
file_size: 502356
relation: main_file
file_date_updated: 2021-05-24T11:15:57Z
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://openreview.net/pdf?id=krz7T0xU9Z_
month: '05'
oa: 1
oa_version: Published Version
publication: 9th International Conference on Learning Representations
publication_status: published
quality_controlled: '1'
related_material:
record:
- id: '9418'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: The inductive bias of ReLU networks on orthogonally separable data
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '9225'
abstract:
- lang: eng
text: "The Landau–Pekar equations describe the dynamics of a strongly coupled polaron.\r\nHere,
we provide a class of initial data for which the associated effective Hamiltonian\r\nhas
a uniform spectral gap for all times. For such initial data, this allows us to
extend the\r\nresults on the adiabatic theorem for the Landau–Pekar equations
and their derivation\r\nfrom the Fröhlich model obtained in previous works to
larger times."
acknowledgement: Funding from the European Union’s Horizon 2020 research and innovation
programme under the ERC Grant Agreement No 694227 (D.F. and R.S.) and under the
Marie Skłodowska-Curie Grant Agreement No. 754411 (S.R.) is gratefully acknowledged.
Open Access funding provided by Institute of Science and Technology (IST Austria)
article_number: '19'
article_processing_charge: Yes (via OA deal)
article_type: original
author:
- first_name: Dario
full_name: Feliciangeli, Dario
id: 41A639AA-F248-11E8-B48F-1D18A9856A87
last_name: Feliciangeli
orcid: 0000-0003-0754-8530
- first_name: Simone Anna Elvira
full_name: Rademacher, Simone Anna Elvira
id: 856966FE-A408-11E9-977E-802DE6697425
last_name: Rademacher
orcid: 0000-0001-5059-4466
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: Feliciangeli D, Rademacher SAE, Seiringer R. Persistence of the spectral gap
for the Landau–Pekar equations. Letters in Mathematical Physics. 2021;111.
doi:10.1007/s11005-020-01350-5
apa: Feliciangeli, D., Rademacher, S. A. E., & Seiringer, R. (2021). Persistence
of the spectral gap for the Landau–Pekar equations. Letters in Mathematical
Physics. Springer Nature. https://doi.org/10.1007/s11005-020-01350-5
chicago: Feliciangeli, Dario, Simone Anna Elvira Rademacher, and Robert Seiringer.
“Persistence of the Spectral Gap for the Landau–Pekar Equations.” Letters in
Mathematical Physics. Springer Nature, 2021. https://doi.org/10.1007/s11005-020-01350-5.
ieee: D. Feliciangeli, S. A. E. Rademacher, and R. Seiringer, “Persistence of the
spectral gap for the Landau–Pekar equations,” Letters in Mathematical Physics,
vol. 111. Springer Nature, 2021.
ista: Feliciangeli D, Rademacher SAE, Seiringer R. 2021. Persistence of the spectral
gap for the Landau–Pekar equations. Letters in Mathematical Physics. 111, 19.
mla: Feliciangeli, Dario, et al. “Persistence of the Spectral Gap for the Landau–Pekar
Equations.” Letters in Mathematical Physics, vol. 111, 19, Springer Nature,
2021, doi:10.1007/s11005-020-01350-5.
short: D. Feliciangeli, S.A.E. Rademacher, R. Seiringer, Letters in Mathematical
Physics 111 (2021).
date_created: 2021-03-07T23:01:25Z
date_published: 2021-02-11T00:00:00Z
date_updated: 2023-09-07T13:30:11Z
day: '11'
ddc:
- '510'
department:
- _id: RoSe
doi: 10.1007/s11005-020-01350-5
ec_funded: 1
external_id:
isi:
- '000617195700001'
file:
- access_level: open_access
checksum: ffbfe1aad623bce7ff529c207e343b53
content_type: application/pdf
creator: dernst
date_created: 2021-03-09T11:44:34Z
date_updated: 2021-03-09T11:44:34Z
file_id: '9232'
file_name: 2021_LettersMathPhysics_Feliciangeli.pdf
file_size: 391205
relation: main_file
success: 1
file_date_updated: 2021-03-09T11:44:34Z
has_accepted_license: '1'
intvolume: ' 111'
isi: 1
language:
- iso: eng
month: '02'
oa: 1
oa_version: Published Version
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '694227'
name: Analysis of quantum many-body systems
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: B67AFEDC-15C9-11EA-A837-991A96BB2854
name: IST Austria Open Access Fund
publication: Letters in Mathematical Physics
publication_identifier:
eissn:
- '15730530'
issn:
- '03779017'
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
record:
- id: '9733'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Persistence of the spectral gap for the Landau–Pekar equations
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 111
year: '2021'
...
---
_id: '9787'
abstract:
- lang: eng
text: We investigate the Fröhlich polaron model on a three-dimensional torus, and
give a proof of the second-order quantum corrections to its ground-state energy
in the strong-coupling limit. Compared to previous work in the confined case,
the translational symmetry (and its breaking in the Pekar approximation) makes
the analysis substantially more challenging.
acknowledgement: "Funding from the European Union’s Horizon 2020 research and innovation
programme under the ERC grant agreement No 694227 is gratefully acknowledged. We
would also like to thank Rupert Frank for many helpful discussions, especially related
to the Gross coordinate transformation defined in Def. 4.1.\r\n"
article_number: '2101.12566'
article_processing_charge: No
author:
- first_name: Dario
full_name: Feliciangeli, Dario
id: 41A639AA-F248-11E8-B48F-1D18A9856A87
last_name: Feliciangeli
orcid: 0000-0003-0754-8530
- first_name: Robert
full_name: Seiringer, Robert
id: 4AFD0470-F248-11E8-B48F-1D18A9856A87
last_name: Seiringer
orcid: 0000-0002-6781-0521
citation:
ama: 'Feliciangeli D, Seiringer R. The strongly coupled polaron on the torus: Quantum
corrections to the Pekar asymptotics. arXiv.'
apa: 'Feliciangeli, D., & Seiringer, R. (n.d.). The strongly coupled polaron
on the torus: Quantum corrections to the Pekar asymptotics. arXiv.'
chicago: 'Feliciangeli, Dario, and Robert Seiringer. “The Strongly Coupled Polaron
on the Torus: Quantum Corrections to the Pekar Asymptotics.” ArXiv, n.d.'
ieee: 'D. Feliciangeli and R. Seiringer, “The strongly coupled polaron on the torus:
Quantum corrections to the Pekar asymptotics,” arXiv. .'
ista: 'Feliciangeli D, Seiringer R. The strongly coupled polaron on the torus: Quantum
corrections to the Pekar asymptotics. arXiv, 2101.12566.'
mla: 'Feliciangeli, Dario, and Robert Seiringer. “The Strongly Coupled Polaron on
the Torus: Quantum Corrections to the Pekar Asymptotics.” ArXiv, 2101.12566.'
short: D. Feliciangeli, R. Seiringer, ArXiv (n.d.).
date_created: 2021-08-06T08:25:57Z
date_published: 2021-02-01T00:00:00Z
date_updated: 2023-09-07T13:30:10Z
day: '01'
ddc:
- '510'
department:
- _id: RoSe
ec_funded: 1
external_id:
arxiv:
- '2101.12566'
has_accepted_license: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2101.12566
month: '02'
oa: 1
oa_version: Preprint
project:
- _id: 25C6DC12-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '694227'
name: Analysis of quantum many-body systems
publication: arXiv
publication_status: submitted
related_material:
record:
- id: '10224'
relation: later_version
status: public
- id: '9733'
relation: dissertation_contains
status: public
status: public
title: 'The strongly coupled polaron on the torus: Quantum corrections to the Pekar
asymptotics'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: preprint
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
year: '2021'
...
---
_id: '9987'
abstract:
- lang: eng
text: 'Stateless model checking (SMC) is one of the standard approaches to the verification
of concurrent programs. As scheduling non-determinism creates exponentially large
spaces of thread interleavings, SMC attempts to partition this space into equivalence
classes and explore only a few representatives from each class. The efficiency
of this approach depends on two factors: (a) the coarseness of the partitioning,
and (b) the time to generate representatives in each class. For this reason, the
search for coarse partitionings that are efficiently explorable is an active research
challenge. In this work we present RVF-SMC , a new SMC algorithm that uses a
novel reads-value-from (RVF) partitioning. Intuitively, two interleavings are
deemed equivalent if they agree on the value obtained in each read event, and
read events induce consistent causal orderings between them. The RVF partitioning
is provably coarser than recent approaches based on Mazurkiewicz and “reads-from”
partitionings. Our experimental evaluation reveals that RVF is quite often a very
effective equivalence, as the underlying partitioning is exponentially coarser
than other approaches. Moreover, RVF-SMC generates representatives very efficiently,
as the reduction in the partitioning is often met with significant speed-ups in
the model checking task.'
acknowledgement: The research was partially funded by the ERC CoG 863818 (ForM-SMArt)
and the Vienna Science and Technology Fund (WWTF) through project ICT15-003.
alternative_title:
- LNCS
article_processing_charge: Yes
author:
- first_name: Pratyush
full_name: Agarwal, Pratyush
last_name: Agarwal
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Shreya
full_name: Pathak, Shreya
last_name: Pathak
- first_name: Andreas
full_name: Pavlogiannis, Andreas
id: 49704004-F248-11E8-B48F-1D18A9856A87
last_name: Pavlogiannis
orcid: 0000-0002-8943-0722
- first_name: Viktor
full_name: Toman, Viktor
id: 3AF3DA7C-F248-11E8-B48F-1D18A9856A87
last_name: Toman
orcid: 0000-0001-9036-063X
citation:
ama: 'Agarwal P, Chatterjee K, Pathak S, Pavlogiannis A, Toman V. Stateless model
checking under a reads-value-from equivalence. In: 33rd International Conference
on Computer-Aided Verification . Vol 12759. Springer Nature; 2021:341-366.
doi:10.1007/978-3-030-81685-8_16'
apa: 'Agarwal, P., Chatterjee, K., Pathak, S., Pavlogiannis, A., & Toman, V.
(2021). Stateless model checking under a reads-value-from equivalence. In 33rd
International Conference on Computer-Aided Verification (Vol. 12759, pp.
341–366). Virtual: Springer Nature. https://doi.org/10.1007/978-3-030-81685-8_16'
chicago: Agarwal, Pratyush, Krishnendu Chatterjee, Shreya Pathak, Andreas Pavlogiannis,
and Viktor Toman. “Stateless Model Checking under a Reads-Value-from Equivalence.”
In 33rd International Conference on Computer-Aided Verification , 12759:341–66.
Springer Nature, 2021. https://doi.org/10.1007/978-3-030-81685-8_16.
ieee: P. Agarwal, K. Chatterjee, S. Pathak, A. Pavlogiannis, and V. Toman, “Stateless
model checking under a reads-value-from equivalence,” in 33rd International
Conference on Computer-Aided Verification , Virtual, 2021, vol. 12759, pp.
341–366.
ista: 'Agarwal P, Chatterjee K, Pathak S, Pavlogiannis A, Toman V. 2021. Stateless
model checking under a reads-value-from equivalence. 33rd International Conference
on Computer-Aided Verification . CAV: Computer Aided Verification , LNCS, vol.
12759, 341–366.'
mla: Agarwal, Pratyush, et al. “Stateless Model Checking under a Reads-Value-from
Equivalence.” 33rd International Conference on Computer-Aided Verification
, vol. 12759, Springer Nature, 2021, pp. 341–66, doi:10.1007/978-3-030-81685-8_16.
short: P. Agarwal, K. Chatterjee, S. Pathak, A. Pavlogiannis, V. Toman, in:, 33rd
International Conference on Computer-Aided Verification , Springer Nature, 2021,
pp. 341–366.
conference:
end_date: 2021-07-23
location: Virtual
name: 'CAV: Computer Aided Verification '
start_date: 2021-07-20
date_created: 2021-09-05T22:01:24Z
date_published: 2021-07-15T00:00:00Z
date_updated: 2023-09-07T13:30:27Z
day: '15'
ddc:
- '000'
department:
- _id: KrCh
doi: 10.1007/978-3-030-81685-8_16
ec_funded: 1
external_id:
arxiv:
- '2105.06424'
isi:
- '000698732400016'
file:
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checksum: 4b346e5fbaa8b9bdf107819c7b2aadee
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creator: dernst
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file_size: 1516756
relation: main_file
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isi: 1
language:
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month: '07'
oa: 1
oa_version: Published Version
page: 341-366
project:
- _id: 25892FC0-B435-11E9-9278-68D0E5697425
grant_number: ICT15-003
name: Efficient Algorithms for Computer Aided Verification
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
call_identifier: H2020
grant_number: '863818'
name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication: '33rd International Conference on Computer-Aided Verification '
publication_identifier:
eisbn:
- 978-3-030-81685-8
eissn:
- 1611-3349
isbn:
- 978-3-030-81684-1
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
record:
- id: '10199'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: Stateless model checking under a reads-value-from equivalence
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: '12759 '
year: '2021'
...
---
_id: '10007'
abstract:
- lang: eng
text: The present thesis is concerned with the derivation of weak-strong uniqueness
principles for curvature driven interface evolution problems not satisfying a
comparison principle. The specific examples being treated are two-phase Navier-Stokes
flow with surface tension, modeling the evolution of two incompressible, viscous
and immiscible fluids separated by a sharp interface, and multiphase mean curvature
flow, which serves as an idealized model for the motion of grain boundaries in
an annealing polycrystalline material. Our main results - obtained in joint works
with Julian Fischer, Tim Laux and Theresa M. Simon - state that prior to the formation
of geometric singularities due to topology changes, the weak solution concept
of Abels (Interfaces Free Bound. 9, 2007) to two-phase Navier-Stokes flow with
surface tension and the weak solution concept of Laux and Otto (Calc. Var. Partial
Differential Equations 55, 2016) to multiphase mean curvature flow (for networks
in R^2 or double bubbles in R^3) represents the unique solution to these interface
evolution problems within the class of classical solutions, respectively. To the
best of the author's knowledge, for interface evolution problems not admitting
a geometric comparison principle the derivation of a weak-strong uniqueness principle
represented an open problem, so that the works contained in the present thesis
constitute the first positive results in this direction. The key ingredient of
our approach consists of the introduction of a novel concept of relative entropies
for a class of curvature driven interface evolution problems, for which the associated
energy contains an interfacial contribution being proportional to the surface
area of the evolving (network of) interface(s). The interfacial part of the relative
entropy gives sufficient control on the interface error between a weak and a classical
solution, and its time evolution can be computed, at least in principle, for any
energy dissipating weak solution concept. A resulting stability estimate for the
relative entropy essentially entails the above mentioned weak-strong uniqueness
principles. The present thesis contains a detailed introduction to our relative
entropy approach, which in particular highlights potential applications to other
problems in curvature driven interface evolution not treated in this thesis.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Sebastian
full_name: Hensel, Sebastian
id: 4D23B7DA-F248-11E8-B48F-1D18A9856A87
last_name: Hensel
orcid: 0000-0001-7252-8072
citation:
ama: 'Hensel S. Curvature driven interface evolution: Uniqueness properties of weak
solution concepts. 2021. doi:10.15479/at:ista:10007'
apa: 'Hensel, S. (2021). Curvature driven interface evolution: Uniqueness properties
of weak solution concepts. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:10007'
chicago: 'Hensel, Sebastian. “Curvature Driven Interface Evolution: Uniqueness Properties
of Weak Solution Concepts.” Institute of Science and Technology Austria, 2021.
https://doi.org/10.15479/at:ista:10007.'
ieee: 'S. Hensel, “Curvature driven interface evolution: Uniqueness properties of
weak solution concepts,” Institute of Science and Technology Austria, 2021.'
ista: 'Hensel S. 2021. Curvature driven interface evolution: Uniqueness properties
of weak solution concepts. Institute of Science and Technology Austria.'
mla: 'Hensel, Sebastian. Curvature Driven Interface Evolution: Uniqueness Properties
of Weak Solution Concepts. Institute of Science and Technology Austria, 2021,
doi:10.15479/at:ista:10007.'
short: 'S. Hensel, Curvature Driven Interface Evolution: Uniqueness Properties of
Weak Solution Concepts, Institute of Science and Technology Austria, 2021.'
date_created: 2021-09-13T11:12:34Z
date_published: 2021-09-14T00:00:00Z
date_updated: 2023-09-07T13:30:45Z
day: '14'
ddc:
- '515'
degree_awarded: PhD
department:
- _id: GradSch
- _id: JuFi
doi: 10.15479/at:ista:10007
ec_funded: 1
file:
- access_level: closed
checksum: c8475faaf0b680b4971f638f1db16347
content_type: application/x-zip-compressed
creator: shensel
date_created: 2021-09-13T11:03:24Z
date_updated: 2021-09-15T14:37:30Z
file_id: '10008'
file_name: thesis_final_Hensel.zip
file_size: 15022154
relation: source_file
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checksum: 1a609937aa5275452822f45f2da17f07
content_type: application/pdf
creator: shensel
date_created: 2021-09-13T14:18:56Z
date_updated: 2021-09-14T09:52:47Z
file_id: '10014'
file_name: thesis_final_Hensel.pdf
file_size: 6583638
relation: main_file
file_date_updated: 2021-09-15T14:37:30Z
has_accepted_license: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
page: '300'
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '665385'
name: International IST Doctoral Program
- _id: 0aa76401-070f-11eb-9043-b5bb049fa26d
call_identifier: H2020
grant_number: '948819'
name: Bridging Scales in Random Materials
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '10012'
relation: part_of_dissertation
status: public
- id: '10013'
relation: part_of_dissertation
status: public
- id: '7489'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Julian L
full_name: Fischer, Julian L
id: 2C12A0B0-F248-11E8-B48F-1D18A9856A87
last_name: Fischer
orcid: 0000-0002-0479-558X
title: 'Curvature driven interface evolution: Uniqueness properties of weak solution
concepts'
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2021'
...
---
_id: '10191'
abstract:
- lang: eng
text: "In this work we solve the algorithmic problem of consistency verification
for the TSO and PSO memory models given a reads-from map, denoted VTSO-rf and
VPSO-rf, respectively. For an execution of n events over k threads and d variables,
we establish novel bounds that scale as nk+1 for TSO and as nk+1· min(nk2, 2k·
d) for PSO. Moreover, based on our solution to these problems, we develop an SMC
algorithm under TSO and PSO that uses the RF equivalence. The algorithm is exploration-optimal,
in the sense that it is guaranteed to explore each class of the RF partitioning
exactly once, and spends polynomial time per class when k is bounded. Finally,
we implement all our algorithms in the SMC tool Nidhugg, and perform a large number
of experiments over benchmarks from existing literature. Our experimental results
show that our algorithms for VTSO-rf and VPSO-rf provide significant scalability
improvements over standard alternatives. Moreover, when used for SMC, the RF partitioning
is often much coarser than the standard Shasha-Snir partitioning for TSO/PSO,
which yields a significant speedup in the model checking task.\r\n\r\n"
acknowledgement: "The research was partially funded by the ERC CoG 863818 (ForM-SMArt)
and the Vienna Science\r\nand Technology Fund (WWTF) through project ICT15-003."
article_number: '164'
article_processing_charge: No
article_type: original
author:
- first_name: Truc Lam
full_name: Bui, Truc Lam
last_name: Bui
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Tushar
full_name: Gautam, Tushar
last_name: Gautam
- first_name: Andreas
full_name: Pavlogiannis, Andreas
id: 49704004-F248-11E8-B48F-1D18A9856A87
last_name: Pavlogiannis
orcid: 0000-0002-8943-0722
- first_name: Viktor
full_name: Toman, Viktor
id: 3AF3DA7C-F248-11E8-B48F-1D18A9856A87
last_name: Toman
orcid: 0000-0001-9036-063X
citation:
ama: Bui TL, Chatterjee K, Gautam T, Pavlogiannis A, Toman V. The reads-from equivalence
for the TSO and PSO memory models. Proceedings of the ACM on Programming Languages.
2021;5(OOPSLA). doi:10.1145/3485541
apa: Bui, T. L., Chatterjee, K., Gautam, T., Pavlogiannis, A., & Toman, V. (2021).
The reads-from equivalence for the TSO and PSO memory models. Proceedings of
the ACM on Programming Languages. Association for Computing Machinery. https://doi.org/10.1145/3485541
chicago: Bui, Truc Lam, Krishnendu Chatterjee, Tushar Gautam, Andreas Pavlogiannis,
and Viktor Toman. “The Reads-from Equivalence for the TSO and PSO Memory Models.”
Proceedings of the ACM on Programming Languages. Association for Computing
Machinery, 2021. https://doi.org/10.1145/3485541.
ieee: T. L. Bui, K. Chatterjee, T. Gautam, A. Pavlogiannis, and V. Toman, “The reads-from
equivalence for the TSO and PSO memory models,” Proceedings of the ACM on Programming
Languages, vol. 5, no. OOPSLA. Association for Computing Machinery, 2021.
ista: Bui TL, Chatterjee K, Gautam T, Pavlogiannis A, Toman V. 2021. The reads-from
equivalence for the TSO and PSO memory models. Proceedings of the ACM on Programming
Languages. 5(OOPSLA), 164.
mla: Bui, Truc Lam, et al. “The Reads-from Equivalence for the TSO and PSO Memory
Models.” Proceedings of the ACM on Programming Languages, vol. 5, no. OOPSLA,
164, Association for Computing Machinery, 2021, doi:10.1145/3485541.
short: T.L. Bui, K. Chatterjee, T. Gautam, A. Pavlogiannis, V. Toman, Proceedings
of the ACM on Programming Languages 5 (2021).
date_created: 2021-10-27T15:05:34Z
date_published: 2021-10-15T00:00:00Z
date_updated: 2023-09-07T13:30:27Z
day: '15'
ddc:
- '000'
department:
- _id: GradSch
- _id: KrCh
doi: 10.1145/3485541
ec_funded: 1
external_id:
arxiv:
- '2011.11763'
file:
- access_level: open_access
checksum: 9d6dce7b611853c529bb7b1915ac579e
content_type: application/pdf
creator: cchlebak
date_created: 2021-11-04T07:24:48Z
date_updated: 2021-11-04T07:24:48Z
file_id: '10215'
file_name: 2021_ProcACMPL_Bui.pdf
file_size: 2903485
relation: main_file
success: 1
file_date_updated: 2021-11-04T07:24:48Z
has_accepted_license: '1'
intvolume: ' 5'
issue: OOPSLA
keyword:
- safety
- risk
- reliability and quality
- software
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
project:
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
call_identifier: H2020
grant_number: '863818'
name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
- _id: 25892FC0-B435-11E9-9278-68D0E5697425
grant_number: ICT15-003
name: Efficient Algorithms for Computer Aided Verification
publication: Proceedings of the ACM on Programming Languages
publication_identifier:
eissn:
- 2475-1421
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
related_material:
record:
- id: '10199'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: The reads-from equivalence for the TSO and PSO memory models
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 5
year: '2021'
...
---
_id: '10013'
abstract:
- lang: eng
text: We derive a weak-strong uniqueness principle for BV solutions to multiphase
mean curvature flow of triple line clusters in three dimensions. Our proof is
based on the explicit construction of a gradient-flow calibration in the sense
of the recent work of Fischer et al. [arXiv:2003.05478] for any such cluster.
This extends the two-dimensional construction to the three-dimensional case of
surfaces meeting along triple junctions.
acknowledgement: This project has received funding from the European Research Council
(ERC) under the European Union’s Horizon 2020 research and innovation programme
(grant agreement No 948819), and from the Deutsche Forschungsgemeinschaft (DFG,
German Research Foundation) under Germany’s Excellence Strategy – EXC-2047/1 – 390685813.
article_number: '2108.01733'
article_processing_charge: No
author:
- first_name: Sebastian
full_name: Hensel, Sebastian
id: 4D23B7DA-F248-11E8-B48F-1D18A9856A87
last_name: Hensel
orcid: 0000-0001-7252-8072
- first_name: Tim
full_name: Laux, Tim
last_name: Laux
citation:
ama: Hensel S, Laux T. Weak-strong uniqueness for the mean curvature flow of double
bubbles. arXiv. doi:10.48550/arXiv.2108.01733
apa: Hensel, S., & Laux, T. (n.d.). Weak-strong uniqueness for the mean curvature
flow of double bubbles. arXiv. https://doi.org/10.48550/arXiv.2108.01733
chicago: Hensel, Sebastian, and Tim Laux. “Weak-Strong Uniqueness for the Mean Curvature
Flow of Double Bubbles.” ArXiv, n.d. https://doi.org/10.48550/arXiv.2108.01733.
ieee: S. Hensel and T. Laux, “Weak-strong uniqueness for the mean curvature flow
of double bubbles,” arXiv. .
ista: Hensel S, Laux T. Weak-strong uniqueness for the mean curvature flow of double
bubbles. arXiv, 2108.01733.
mla: Hensel, Sebastian, and Tim Laux. “Weak-Strong Uniqueness for the Mean Curvature
Flow of Double Bubbles.” ArXiv, 2108.01733, doi:10.48550/arXiv.2108.01733.
short: S. Hensel, T. Laux, ArXiv (n.d.).
date_created: 2021-09-13T12:17:11Z
date_published: 2021-08-03T00:00:00Z
date_updated: 2023-09-07T13:30:45Z
day: '03'
department:
- _id: JuFi
doi: 10.48550/arXiv.2108.01733
ec_funded: 1
external_id:
arxiv:
- '2108.01733'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2108.01733
month: '08'
oa: 1
oa_version: Preprint
project:
- _id: 0aa76401-070f-11eb-9043-b5bb049fa26d
call_identifier: H2020
grant_number: '948819'
name: Bridging Scales in Random Materials
publication: arXiv
publication_status: submitted
related_material:
record:
- id: '13043'
relation: later_version
status: public
- id: '10007'
relation: dissertation_contains
status: public
status: public
title: Weak-strong uniqueness for the mean curvature flow of double bubbles
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '9928'
abstract:
- lang: eng
text: There are two elementary superconducting qubit types that derive directly
from the quantum harmonic oscillator. In one, the inductor is replaced by a nonlinear
Josephson junction to realize the widely used charge qubits with a compact phase
variable and a discrete charge wave function. In the other, the junction is added
in parallel, which gives rise to an extended phase variable, continuous wave functions,
and a rich energy-level structure due to the loop topology. While the corresponding
rf superconducting quantum interference device Hamiltonian was introduced as a
quadratic quasi-one-dimensional potential approximation to describe the fluxonium
qubit implemented with long Josephson-junction arrays, in this work we implement
it directly using a linear superinductor formed by a single uninterrupted aluminum
wire. We present a large variety of qubits, all stemming from the same circuit
but with drastically different characteristic energy scales. This includes flux
and fluxonium qubits but also the recently introduced quasicharge qubit with strongly
enhanced zero-point phase fluctuations and a heavily suppressed flux dispersion.
The use of a geometric inductor results in high reproducibility of the inductive
energy as guaranteed by top-down lithography—a key ingredient for intrinsically
protected superconducting qubits.
acknowledged_ssus:
- _id: NanoFab
- _id: M-Shop
acknowledgement: We thank W. Hughes for analytic and numerical modeling during the
early stages of this work, J. Koch for discussions and support with the scqubits
package, R. Sett, P. Zielinski, and L. Drmic for software development, and G. Katsaros
for equipment support, as well as the MIBA workshop and the Institute of Science
and Technology Austria nanofabrication facility. We thank I. Pop, S. Deleglise,
and E. Flurin for discussions. This work was supported by a NOMIS Foundation research
grant, the Austrian Science Fund (FWF) through BeyondC (F7105), and IST Austria.
M.P. is the recipient of a Pöttinger scholarship at IST Austria. E.R. is the recipient
of a DOC fellowship of the Austrian Academy of Sciences at IST Austria.
article_processing_charge: No
article_type: original
author:
- first_name: Matilda
full_name: Peruzzo, Matilda
id: 3F920B30-F248-11E8-B48F-1D18A9856A87
last_name: Peruzzo
orcid: 0000-0002-3415-4628
- first_name: Farid
full_name: Hassani, Farid
id: 2AED110C-F248-11E8-B48F-1D18A9856A87
last_name: Hassani
orcid: 0000-0001-6937-5773
- first_name: Gregory
full_name: Szep, Gregory
last_name: Szep
- first_name: Andrea
full_name: Trioni, Andrea
id: 42F71B44-F248-11E8-B48F-1D18A9856A87
last_name: Trioni
- first_name: Elena
full_name: Redchenko, Elena
id: 2C21D6E8-F248-11E8-B48F-1D18A9856A87
last_name: Redchenko
- first_name: Martin
full_name: Zemlicka, Martin
id: 2DCF8DE6-F248-11E8-B48F-1D18A9856A87
last_name: Zemlicka
- first_name: Johannes M
full_name: Fink, Johannes M
id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
last_name: Fink
orcid: 0000-0001-8112-028X
citation:
ama: 'Peruzzo M, Hassani F, Szep G, et al. Geometric superinductance qubits: Controlling
phase delocalization across a single Josephson junction. PRX Quantum. 2021;2(4):040341.
doi:10.1103/PRXQuantum.2.040341'
apa: 'Peruzzo, M., Hassani, F., Szep, G., Trioni, A., Redchenko, E., Zemlicka, M.,
& Fink, J. M. (2021). Geometric superinductance qubits: Controlling phase
delocalization across a single Josephson junction. PRX Quantum. American
Physical Society. https://doi.org/10.1103/PRXQuantum.2.040341'
chicago: 'Peruzzo, Matilda, Farid Hassani, Gregory Szep, Andrea Trioni, Elena Redchenko,
Martin Zemlicka, and Johannes M Fink. “Geometric Superinductance Qubits: Controlling
Phase Delocalization across a Single Josephson Junction.” PRX Quantum.
American Physical Society, 2021. https://doi.org/10.1103/PRXQuantum.2.040341.'
ieee: 'M. Peruzzo et al., “Geometric superinductance qubits: Controlling
phase delocalization across a single Josephson junction,” PRX Quantum,
vol. 2, no. 4. American Physical Society, p. 040341, 2021.'
ista: 'Peruzzo M, Hassani F, Szep G, Trioni A, Redchenko E, Zemlicka M, Fink JM.
2021. Geometric superinductance qubits: Controlling phase delocalization across
a single Josephson junction. PRX Quantum. 2(4), 040341.'
mla: 'Peruzzo, Matilda, et al. “Geometric Superinductance Qubits: Controlling Phase
Delocalization across a Single Josephson Junction.” PRX Quantum, vol. 2,
no. 4, American Physical Society, 2021, p. 040341, doi:10.1103/PRXQuantum.2.040341.'
short: M. Peruzzo, F. Hassani, G. Szep, A. Trioni, E. Redchenko, M. Zemlicka, J.M.
Fink, PRX Quantum 2 (2021) 040341.
date_created: 2021-08-17T08:14:18Z
date_published: 2021-11-24T00:00:00Z
date_updated: 2023-09-07T13:31:22Z
day: '24'
ddc:
- '530'
department:
- _id: JoFi
- _id: NanoFab
- _id: M-Shop
doi: 10.1103/PRXQuantum.2.040341
ec_funded: 1
external_id:
arxiv:
- '2106.05882'
isi:
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file_size: 4247422
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success: 1
file_date_updated: 2022-01-18T11:29:33Z
has_accepted_license: '1'
intvolume: ' 2'
isi: 1
issue: '4'
keyword:
- quantum physics
- mesoscale and nanoscale physics
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
page: '040341'
project:
- _id: 26927A52-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: F07105
name: Integrating superconducting quantum circuits
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '665385'
name: International IST Doctoral Program
- _id: 2622978C-B435-11E9-9278-68D0E5697425
name: Hybrid Semiconductor - Superconductor Quantum Devices
publication: PRX Quantum
publication_identifier:
eissn:
- 2691-3399
publication_status: published
publisher: American Physical Society
quality_controlled: '1'
related_material:
record:
- id: '13057'
relation: research_data
status: public
- id: '9920'
relation: dissertation_contains
status: public
scopus_import: '1'
status: public
title: 'Geometric superinductance qubits: Controlling phase delocalization across
a single Josephson junction'
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 2
year: '2021'
...
---
_id: '10030'
abstract:
- lang: eng
text: "This PhD thesis is primarily focused on the study of discrete transport problems,
introduced for the first time in the seminal works of Maas [Maa11] and Mielke
[Mie11] on finite state Markov chains and reaction-diffusion equations, respectively.
More in detail, my research focuses on the study of transport costs on graphs,
in particular the convergence and the stability of such problems in the discrete-to-continuum
limit. This thesis also includes some results concerning\r\nnon-commutative optimal
transport. The first chapter of this thesis consists of a general introduction
to the optimal transport problems, both in the discrete, the continuous, and the
non-commutative setting. Chapters 2 and 3 present the content of two works, obtained
in collaboration with Peter Gladbach, Eva Kopfer, and Jan Maas, where we have
been able to show the convergence of discrete transport costs on periodic graphs
to suitable continuous ones, which can be described by means of a homogenisation
result. We first focus on the particular case of quadratic costs on the real line
and then extending the result to more general costs in arbitrary dimension. Our
results are the first complete characterisation of limits of transport costs on
periodic graphs in arbitrary dimension which do not rely on any additional symmetry.
In Chapter 4 we turn our attention to one of the intriguing connection between
evolution equations and optimal transport, represented by the theory of gradient
flows. We show that discrete gradient flow structures associated to a finite volume
approximation of a certain class of diffusive equations (Fokker–Planck) is stable
in the limit of vanishing meshes, reproving the convergence of the scheme via
the method of evolutionary Γ-convergence and exploiting a more variational point
of view on the problem. This is based on a collaboration with Dominik Forkert
and Jan Maas. Chapter 5 represents a change of perspective, moving away from the
discrete world and reaching the non-commutative one. As in the discrete case,
we discuss how classical tools coming from the commutative optimal transport can
be translated into the setting of density matrices. In particular, in this final
chapter we present a non-commutative version of the Schrödinger problem (or entropic
regularised optimal transport problem) and discuss existence and characterisation
of minimisers, a duality result, and present a non-commutative version of the
well-known Sinkhorn algorithm to compute the above mentioned optimisers. This
is based on a joint work with Dario Feliciangeli and Augusto Gerolin. Finally,
Appendix A and B contain some additional material and discussions, with particular
attention to Harnack inequalities and the regularity of flows on discrete spaces."
acknowledged_ssus:
- _id: M-Shop
- _id: NanoFab
acknowledgement: The author gratefully acknowledges support by the Austrian Science
Fund (FWF), grants No W1245.
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Lorenzo
full_name: Portinale, Lorenzo
id: 30AD2CBC-F248-11E8-B48F-1D18A9856A87
last_name: Portinale
citation:
ama: Portinale L. Discrete-to-continuum limits of transport problems and gradient
flows in the space of measures. 2021. doi:10.15479/at:ista:10030
apa: Portinale, L. (2021). Discrete-to-continuum limits of transport problems
and gradient flows in the space of measures. Institute of Science and Technology
Austria. https://doi.org/10.15479/at:ista:10030
chicago: Portinale, Lorenzo. “Discrete-to-Continuum Limits of Transport Problems
and Gradient Flows in the Space of Measures.” Institute of Science and Technology
Austria, 2021. https://doi.org/10.15479/at:ista:10030.
ieee: L. Portinale, “Discrete-to-continuum limits of transport problems and gradient
flows in the space of measures,” Institute of Science and Technology Austria,
2021.
ista: Portinale L. 2021. Discrete-to-continuum limits of transport problems and
gradient flows in the space of measures. Institute of Science and Technology Austria.
mla: Portinale, Lorenzo. Discrete-to-Continuum Limits of Transport Problems and
Gradient Flows in the Space of Measures. Institute of Science and Technology
Austria, 2021, doi:10.15479/at:ista:10030.
short: L. Portinale, Discrete-to-Continuum Limits of Transport Problems and Gradient
Flows in the Space of Measures, Institute of Science and Technology Austria, 2021.
date_created: 2021-09-21T09:14:15Z
date_published: 2021-09-22T00:00:00Z
date_updated: 2023-09-07T13:31:06Z
day: '22'
ddc:
- '515'
degree_awarded: PhD
department:
- _id: GradSch
- _id: JaMa
doi: 10.15479/at:ista:10030
file:
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content_type: application/x-zip-compressed
creator: cchlebak
date_created: 2021-09-21T09:17:34Z
date_updated: 2022-03-10T12:14:42Z
file_id: '10032'
file_name: tex_and_pictures.zip
file_size: 3876668
relation: source_file
- access_level: open_access
checksum: 9789e9d967c853c1503ec7f307170279
content_type: application/pdf
creator: cchlebak
date_created: 2021-09-27T11:14:31Z
date_updated: 2021-09-27T11:14:31Z
file_id: '10047'
file_name: thesis_portinale_Final (1).pdf
file_size: 2532673
relation: main_file
file_date_updated: 2022-03-10T12:14:42Z
has_accepted_license: '1'
language:
- iso: eng
month: '09'
oa: 1
oa_version: Published Version
project:
- _id: 260788DE-B435-11E9-9278-68D0E5697425
call_identifier: FWF
name: Dissipation and Dispersion in Nonlinear Partial Differential Equations
- _id: fc31cba2-9c52-11eb-aca3-ff467d239cd2
grant_number: F6504
name: Taming Complexity in Partial Differential Systems
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '10022'
relation: part_of_dissertation
status: public
- id: '9792'
relation: part_of_dissertation
status: public
- id: '7573'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Jan
full_name: Maas, Jan
id: 4C5696CE-F248-11E8-B48F-1D18A9856A87
last_name: Maas
orcid: 0000-0002-0845-1338
title: Discrete-to-continuum limits of transport problems and gradient flows in the
space of measures
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2021'
...
---
_id: '9920'
abstract:
- lang: eng
text: 'This work is concerned with two fascinating circuit quantum electrodynamics
components, the Josephson junction and the geometric superinductor, and the interesting
experiments that can be done by combining the two. The Josephson junction has
revolutionized the field of superconducting circuits as a non-linear dissipation-less
circuit element and is used in almost all superconducting qubit implementations
since the 90s. On the other hand, the superinductor is a relatively new circuit
element introduced as a key component of the fluxonium qubit in 2009. This is
an inductor with characteristic impedance larger than the resistance quantum and
self-resonance frequency in the GHz regime. The combination of these two elements
can occur in two fundamental ways: in parallel and in series. When connected in
parallel the two create the fluxonium qubit, a loop with large inductance and
a rich energy spectrum reliant on quantum tunneling. On the other hand placing
the two elements in series aids with the measurement of the IV curve of a single
Josephson junction in a high impedance environment. In this limit theory predicts
that the junction will behave as its dual element: the phase-slip junction. While
the Josephson junction acts as a non-linear inductor the phase-slip junction has
the behavior of a non-linear capacitance and can be used to measure new Josephson
junction phenomena, namely Coulomb blockade of Cooper pairs and phase-locked Bloch
oscillations. The latter experiment allows for a direct link between frequency
and current which is an elusive connection in quantum metrology. This work introduces
the geometric superinductor, a superconducting circuit element where the high
inductance is due to the geometry rather than the material properties of the superconductor,
realized from a highly miniaturized superconducting planar coil. These structures
will be described and characterized as resonators and qubit inductors and progress
towards the measurement of phase-locked Bloch oscillations will be presented.'
acknowledged_ssus:
- _id: NanoFab
- _id: M-Shop
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Matilda
full_name: Peruzzo, Matilda
id: 3F920B30-F248-11E8-B48F-1D18A9856A87
last_name: Peruzzo
orcid: 0000-0002-3415-4628
citation:
ama: Peruzzo M. Geometric superinductors and their applications in circuit quantum
electrodynamics. 2021. doi:10.15479/at:ista:9920
apa: Peruzzo, M. (2021). Geometric superinductors and their applications in circuit
quantum electrodynamics. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:9920
chicago: Peruzzo, Matilda. “Geometric Superinductors and Their Applications in Circuit
Quantum Electrodynamics.” Institute of Science and Technology Austria, 2021. https://doi.org/10.15479/at:ista:9920.
ieee: M. Peruzzo, “Geometric superinductors and their applications in circuit quantum
electrodynamics,” Institute of Science and Technology Austria, 2021.
ista: Peruzzo M. 2021. Geometric superinductors and their applications in circuit
quantum electrodynamics. Institute of Science and Technology Austria.
mla: Peruzzo, Matilda. Geometric Superinductors and Their Applications in Circuit
Quantum Electrodynamics. Institute of Science and Technology Austria, 2021,
doi:10.15479/at:ista:9920.
short: M. Peruzzo, Geometric Superinductors and Their Applications in Circuit Quantum
Electrodynamics, Institute of Science and Technology Austria, 2021.
date_created: 2021-08-16T09:44:09Z
date_published: 2021-08-19T00:00:00Z
date_updated: 2023-09-07T13:31:22Z
day: '19'
ddc:
- '539'
degree_awarded: PhD
department:
- _id: GradSch
- _id: JoFi
doi: 10.15479/at:ista:9920
file:
- access_level: closed
checksum: 3cd1986efde5121d7581f6fcf9090da8
content_type: application/x-zip-compressed
creator: mperuzzo
date_created: 2021-08-16T09:33:21Z
date_updated: 2021-09-06T08:39:47Z
file_id: '9924'
file_name: GeometricSuperinductorsForCQED.zip
file_size: 151387283
relation: source_file
- access_level: open_access
checksum: 50928c621cdf0775d7a5906b9dc8602c
content_type: application/pdf
creator: mperuzzo
date_created: 2021-08-18T14:20:06Z
date_updated: 2021-09-06T08:39:47Z
file_id: '9939'
file_name: GeometricSuperinductorsAndTheirApplicationsIncQED-1b.pdf
file_size: 17596344
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checksum: 37f486aa1b622fe44af00d627ec13f6c
content_type: application/pdf
creator: mperuzzo
date_created: 2021-08-18T14:20:09Z
date_updated: 2021-09-06T08:39:47Z
description: Extra copy of the thesis as PDF/A-2b
file_id: '9940'
file_name: GeometricSuperinductorsAndTheirApplicationsIncQED-2b.pdf
file_size: 17592425
relation: other
file_date_updated: 2021-09-06T08:39:47Z
has_accepted_license: '1'
keyword:
- quantum computing
- superinductor
- quantum metrology
language:
- iso: eng
month: '08'
oa: 1
oa_version: Published Version
page: '149'
publication_identifier:
isbn:
- 978-3-99078-013-8
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '9928'
relation: part_of_dissertation
status: public
- id: '8755'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Johannes M
full_name: Fink, Johannes M
id: 4B591CBA-F248-11E8-B48F-1D18A9856A87
last_name: Fink
orcid: 0000-0001-8112-028X
title: Geometric superinductors and their applications in circuit quantum electrodynamics
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2021'
...
---
_id: '10432'
abstract:
- lang: eng
text: One key element behind the recent progress of machine learning has been the
ability to train machine learning models in large-scale distributed shared-memory
and message-passing environments. Most of these models are trained employing variants
of stochastic gradient descent (SGD) based optimization, but most methods involve
some type of consistency relaxation relative to sequential SGD, to mitigate its
large communication or synchronization costs at scale. In this paper, we introduce
a general consistency condition covering communication-reduced and asynchronous
distributed SGD implementations. Our framework, called elastic consistency, decouples
the system-specific aspects of the implementation from the SGD convergence requirements,
giving a general way to obtain convergence bounds for a wide variety of distributed
SGD methods used in practice. Elastic consistency can be used to re-derive or
improve several previous convergence bounds in message-passing and shared-memory
settings, but also to analyze new models and distribution schemes. As a direct
application, we propose and analyze a new synchronization-avoiding scheduling
scheme for distributed SGD, and show that it can be used to efficiently train
deep convolutional models for image classification.
acknowledgement: "We would like to thank Christopher De Sa for his feedback on an
earlier draft of this paper, as well as the anonymous AAAI reviewers for their useful
comments. This project has received\r\nfunding from the European Research Council
(ERC) under the European Union’s Horizon 2020 research and innovation programme
(grant agreement No 805223 ScaleML). Bapi\r\nChatterjee was supported by the European
Union’s Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie
grant agreement No. 754411 (ISTPlus)."
article_processing_charge: No
author:
- first_name: Giorgi
full_name: Nadiradze, Giorgi
id: 3279A00C-F248-11E8-B48F-1D18A9856A87
last_name: Nadiradze
orcid: 0000-0001-5634-0731
- first_name: Ilia
full_name: Markov, Ilia
id: D0CF4148-C985-11E9-8066-0BDEE5697425
last_name: Markov
- first_name: Bapi
full_name: Chatterjee, Bapi
id: 3C41A08A-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-2742-4028
- first_name: 'Vyacheslav '
full_name: 'Kungurtsev, Vyacheslav '
last_name: Kungurtsev
- first_name: Dan-Adrian
full_name: Alistarh, Dan-Adrian
id: 4A899BFC-F248-11E8-B48F-1D18A9856A87
last_name: Alistarh
orcid: 0000-0003-3650-940X
citation:
ama: 'Nadiradze G, Markov I, Chatterjee B, Kungurtsev V, Alistarh D-A. Elastic consistency:
A practical consistency model for distributed stochastic gradient descent. In:
Proceedings of the AAAI Conference on Artificial Intelligence. Vol 35.
; 2021:9037-9045.'
apa: 'Nadiradze, G., Markov, I., Chatterjee, B., Kungurtsev, V., & Alistarh,
D.-A. (2021). Elastic consistency: A practical consistency model for distributed
stochastic gradient descent. In Proceedings of the AAAI Conference on Artificial
Intelligence (Vol. 35, pp. 9037–9045). Virtual.'
chicago: 'Nadiradze, Giorgi, Ilia Markov, Bapi Chatterjee, Vyacheslav Kungurtsev,
and Dan-Adrian Alistarh. “Elastic Consistency: A Practical Consistency Model for
Distributed Stochastic Gradient Descent.” In Proceedings of the AAAI Conference
on Artificial Intelligence, 35:9037–45, 2021.'
ieee: 'G. Nadiradze, I. Markov, B. Chatterjee, V. Kungurtsev, and D.-A. Alistarh,
“Elastic consistency: A practical consistency model for distributed stochastic
gradient descent,” in Proceedings of the AAAI Conference on Artificial Intelligence,
Virtual, 2021, vol. 35, no. 10, pp. 9037–9045.'
ista: 'Nadiradze G, Markov I, Chatterjee B, Kungurtsev V, Alistarh D-A. 2021. Elastic
consistency: A practical consistency model for distributed stochastic gradient
descent. Proceedings of the AAAI Conference on Artificial Intelligence. AAAI:
Association for the Advancement of Artificial Intelligence vol. 35, 9037–9045.'
mla: 'Nadiradze, Giorgi, et al. “Elastic Consistency: A Practical Consistency Model
for Distributed Stochastic Gradient Descent.” Proceedings of the AAAI Conference
on Artificial Intelligence, vol. 35, no. 10, 2021, pp. 9037–45.'
short: G. Nadiradze, I. Markov, B. Chatterjee, V. Kungurtsev, D.-A. Alistarh, in:,
Proceedings of the AAAI Conference on Artificial Intelligence, 2021, pp. 9037–9045.
conference:
end_date: 2021-02-09
location: Virtual
name: 'AAAI: Association for the Advancement of Artificial Intelligence'
start_date: 2021-02-02
date_created: 2021-12-09T09:21:35Z
date_published: 2021-05-18T00:00:00Z
date_updated: 2023-09-07T13:31:39Z
day: '18'
department:
- _id: DaAl
ec_funded: 1
external_id:
arxiv:
- '2001.05918'
intvolume: ' 35'
issue: '10'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://ojs.aaai.org/index.php/AAAI/article/view/17092
month: '05'
oa: 1
oa_version: Published Version
page: 9037-9045
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '805223'
name: Elastic Coordination for Scalable Machine Learning
publication: Proceedings of the AAAI Conference on Artificial Intelligence
publication_status: published
quality_controlled: '1'
related_material:
record:
- id: '10429'
relation: dissertation_contains
status: public
status: public
title: 'Elastic consistency: A practical consistency model for distributed stochastic
gradient descent'
type: conference
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
volume: 35
year: '2021'
...
---
_id: '10041'
abstract:
- lang: eng
text: Yao’s garbling scheme is one of the most fundamental cryptographic constructions.
Lindell and Pinkas (Journal of Cryptograhy 2009) gave a formal proof of security
in the selective setting where the adversary chooses the challenge inputs before
seeing the garbled circuit assuming secure symmetric-key encryption (and hence
one-way functions). This was followed by results, both positive and negative,
concerning its security in the, stronger, adaptive setting. Applebaum et al. (Crypto
2013) showed that it cannot satisfy adaptive security as is, due to a simple incompressibility
argument. Jafargholi and Wichs (TCC 2017) considered a natural adaptation of Yao’s
scheme (where the output mapping is sent in the online phase, together with the
garbled input) that circumvents this negative result, and proved that it is adaptively
secure, at least for shallow circuits. In particular, they showed that for the
class of circuits of depth δ , the loss in security is at most exponential in δ
. The above results all concern the simulation-based notion of security. In this
work, we show that the upper bound of Jafargholi and Wichs is basically optimal
in a strong sense. As our main result, we show that there exists a family of Boolean
circuits, one for each depth δ∈N , such that any black-box reduction proving
the adaptive indistinguishability of the natural adaptation of Yao’s scheme from
any symmetric-key encryption has to lose a factor that is exponential in δ√
. Since indistinguishability is a weaker notion than simulation, our bound also
applies to adaptive simulation. To establish our results, we build on the recent
approach of Kamath et al. (Eprint 2021), which uses pebbling lower bounds in conjunction
with oracle separations to prove fine-grained lower bounds on loss in cryptographic
security.
acknowledgement: We would like to thank the anonymous reviewers of Crypto’21 whose
detailed comments helped us considerably improve the presentation of the paper.
alternative_title:
- LCNS
article_processing_charge: No
author:
- first_name: Chethan
full_name: Kamath Hosdurg, Chethan
id: 4BD3F30E-F248-11E8-B48F-1D18A9856A87
last_name: Kamath Hosdurg
- first_name: Karen
full_name: Klein, Karen
id: 3E83A2F8-F248-11E8-B48F-1D18A9856A87
last_name: Klein
- first_name: Krzysztof Z
full_name: Pietrzak, Krzysztof Z
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
- first_name: Daniel
full_name: Wichs, Daniel
last_name: Wichs
citation:
ama: 'Kamath Hosdurg C, Klein K, Pietrzak KZ, Wichs D. Limits on the Adaptive Security
of Yao’s Garbling. In: 41st Annual International Cryptology Conference, Part
II . Vol 12826. Cham: Springer Nature; 2021:486-515. doi:10.1007/978-3-030-84245-1_17'
apa: 'Kamath Hosdurg, C., Klein, K., Pietrzak, K. Z., & Wichs, D. (2021). Limits
on the Adaptive Security of Yao’s Garbling. In 41st Annual International Cryptology
Conference, Part II (Vol. 12826, pp. 486–515). Cham: Springer Nature. https://doi.org/10.1007/978-3-030-84245-1_17'
chicago: 'Kamath Hosdurg, Chethan, Karen Klein, Krzysztof Z Pietrzak, and Daniel
Wichs. “Limits on the Adaptive Security of Yao’s Garbling.” In 41st Annual
International Cryptology Conference, Part II , 12826:486–515. Cham: Springer
Nature, 2021. https://doi.org/10.1007/978-3-030-84245-1_17.'
ieee: C. Kamath Hosdurg, K. Klein, K. Z. Pietrzak, and D. Wichs, “Limits on the
Adaptive Security of Yao’s Garbling,” in 41st Annual International Cryptology
Conference, Part II , Virtual, 2021, vol. 12826, pp. 486–515.
ista: 'Kamath Hosdurg C, Klein K, Pietrzak KZ, Wichs D. 2021. Limits on the Adaptive
Security of Yao’s Garbling. 41st Annual International Cryptology Conference, Part
II . CRYPTO: Annual International Cryptology Conference, LCNS, vol. 12826, 486–515.'
mla: Kamath Hosdurg, Chethan, et al. “Limits on the Adaptive Security of Yao’s Garbling.”
41st Annual International Cryptology Conference, Part II , vol. 12826,
Springer Nature, 2021, pp. 486–515, doi:10.1007/978-3-030-84245-1_17.
short: C. Kamath Hosdurg, K. Klein, K.Z. Pietrzak, D. Wichs, in:, 41st Annual International
Cryptology Conference, Part II , Springer Nature, Cham, 2021, pp. 486–515.
conference:
end_date: 2021-08-20
location: Virtual
name: 'CRYPTO: Annual International Cryptology Conference'
start_date: 2021-08-16
date_created: 2021-09-23T14:06:15Z
date_published: 2021-08-11T00:00:00Z
date_updated: 2023-09-07T13:32:11Z
day: '11'
department:
- _id: KrPi
doi: 10.1007/978-3-030-84245-1_17
ec_funded: 1
intvolume: ' 12826'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://eprint.iacr.org/2021/945
month: '08'
oa: 1
oa_version: Preprint
page: 486-515
place: Cham
project:
- _id: 258AA5B2-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '682815'
name: Teaching Old Crypto New Tricks
publication: '41st Annual International Cryptology Conference, Part II '
publication_identifier:
eisbn:
- 978-3-030-84245-1
eissn:
- 1611-3349
isbn:
- 978-3-030-84244-4
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
record:
- id: '10035'
relation: dissertation_contains
status: public
status: public
title: Limits on the Adaptive Security of Yao’s Garbling
type: conference
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
volume: 12826
year: '2021'
...
---
_id: '10049'
abstract:
- lang: eng
text: While messaging systems with strong security guarantees are widely used in
practice, designing a protocol that scales efficiently to large groups and enjoys
similar security guarantees remains largely open. The two existing proposals to
date are ART (Cohn-Gordon et al., CCS18) and TreeKEM (IETF, The Messaging Layer
Security Protocol, draft). TreeKEM is the currently considered candidate by the
IETF MLS working group, but dynamic group operations (i.e. adding and removing
users) can cause efficiency issues. In this paper we formalize and analyze a variant
of TreeKEM which we term Tainted TreeKEM (TTKEM for short). The basic idea underlying
TTKEM was suggested by Millican (MLS mailing list, February 2018). This version
is more efficient than TreeKEM for some natural distributions of group operations,
we quantify this through simulations.Our second contribution is two security proofs
for TTKEM which establish post compromise and forward secrecy even against adaptive
attackers. The security loss (to the underlying PKE) in the Random Oracle Model
is a polynomial factor, and a quasipolynomial one in the Standard Model. Our proofs
can be adapted to TreeKEM as well. Before our work no security proof for any TreeKEM-like
protocol establishing tight security against an adversary who can adaptively choose
the sequence of operations was known. We also are the first to prove (or even
formalize) active security where the server can arbitrarily deviate from the protocol
specification. Proving fully active security – where also the users can arbitrarily
deviate – remains open.
acknowledgement: The first three authors contributed equally to this work. Funded
by the European Research Council (ERC) under the European Union’s Horizon2020 research
and innovation programme (682815-TOCNeT). Funded by the European Union’s Horizon
2020 research and innovation programme under the Marie Skłodowska-Curie Grant Agreement
No.665385.
article_processing_charge: No
author:
- first_name: Karen
full_name: Klein, Karen
id: 3E83A2F8-F248-11E8-B48F-1D18A9856A87
last_name: Klein
- first_name: Guillermo
full_name: Pascual Perez, Guillermo
id: 2D7ABD02-F248-11E8-B48F-1D18A9856A87
last_name: Pascual Perez
orcid: 0000-0001-8630-415X
- first_name: Michael
full_name: Walter, Michael
id: 488F98B0-F248-11E8-B48F-1D18A9856A87
last_name: Walter
orcid: 0000-0003-3186-2482
- first_name: Chethan
full_name: Kamath Hosdurg, Chethan
id: 4BD3F30E-F248-11E8-B48F-1D18A9856A87
last_name: Kamath Hosdurg
- first_name: Margarita
full_name: Capretto, Margarita
last_name: Capretto
- first_name: Miguel
full_name: Cueto Noval, Miguel
id: ffc563a3-f6e0-11ea-865d-e3cce03d17cc
last_name: Cueto Noval
- first_name: Ilia
full_name: Markov, Ilia
id: D0CF4148-C985-11E9-8066-0BDEE5697425
last_name: Markov
- first_name: Michelle X
full_name: Yeo, Michelle X
id: 2D82B818-F248-11E8-B48F-1D18A9856A87
last_name: Yeo
- first_name: Joel F
full_name: Alwen, Joel F
id: 2A8DFA8C-F248-11E8-B48F-1D18A9856A87
last_name: Alwen
- first_name: Krzysztof Z
full_name: Pietrzak, Krzysztof Z
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
citation:
ama: 'Klein K, Pascual Perez G, Walter M, et al. Keep the dirt: tainted TreeKEM,
adaptively and actively secure continuous group key agreement. In: 2021 IEEE
Symposium on Security and Privacy . IEEE; 2021:268-284. doi:10.1109/sp40001.2021.00035'
apa: 'Klein, K., Pascual Perez, G., Walter, M., Kamath Hosdurg, C., Capretto, M.,
Cueto Noval, M., … Pietrzak, K. Z. (2021). Keep the dirt: tainted TreeKEM, adaptively
and actively secure continuous group key agreement. In 2021 IEEE Symposium
on Security and Privacy (pp. 268–284). San Francisco, CA, United States:
IEEE. https://doi.org/10.1109/sp40001.2021.00035'
chicago: 'Klein, Karen, Guillermo Pascual Perez, Michael Walter, Chethan Kamath
Hosdurg, Margarita Capretto, Miguel Cueto Noval, Ilia Markov, Michelle X Yeo,
Joel F Alwen, and Krzysztof Z Pietrzak. “Keep the Dirt: Tainted TreeKEM, Adaptively
and Actively Secure Continuous Group Key Agreement.” In 2021 IEEE Symposium
on Security and Privacy , 268–84. IEEE, 2021. https://doi.org/10.1109/sp40001.2021.00035.'
ieee: 'K. Klein et al., “Keep the dirt: tainted TreeKEM, adaptively and actively
secure continuous group key agreement,” in 2021 IEEE Symposium on Security
and Privacy , San Francisco, CA, United States, 2021, pp. 268–284.'
ista: 'Klein K, Pascual Perez G, Walter M, Kamath Hosdurg C, Capretto M, Cueto Noval
M, Markov I, Yeo MX, Alwen JF, Pietrzak KZ. 2021. Keep the dirt: tainted TreeKEM,
adaptively and actively secure continuous group key agreement. 2021 IEEE Symposium
on Security and Privacy . SP: Symposium on Security and Privacy, 268–284.'
mla: 'Klein, Karen, et al. “Keep the Dirt: Tainted TreeKEM, Adaptively and Actively
Secure Continuous Group Key Agreement.” 2021 IEEE Symposium on Security and
Privacy , IEEE, 2021, pp. 268–84, doi:10.1109/sp40001.2021.00035.'
short: K. Klein, G. Pascual Perez, M. Walter, C. Kamath Hosdurg, M. Capretto, M.
Cueto Noval, I. Markov, M.X. Yeo, J.F. Alwen, K.Z. Pietrzak, in:, 2021 IEEE Symposium
on Security and Privacy , IEEE, 2021, pp. 268–284.
conference:
end_date: 2021-05-27
location: San Francisco, CA, United States
name: 'SP: Symposium on Security and Privacy'
start_date: 2021-05-24
date_created: 2021-09-27T13:46:27Z
date_published: 2021-08-26T00:00:00Z
date_updated: 2023-09-07T13:32:11Z
day: '26'
department:
- _id: KrPi
- _id: DaAl
doi: 10.1109/sp40001.2021.00035
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://eprint.iacr.org/2019/1489
month: '08'
oa: 1
oa_version: Preprint
page: 268-284
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '665385'
name: International IST Doctoral Program
- _id: 258AA5B2-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '682815'
name: Teaching Old Crypto New Tricks
publication: '2021 IEEE Symposium on Security and Privacy '
publication_status: published
publisher: IEEE
quality_controlled: '1'
related_material:
record:
- id: '10035'
relation: dissertation_contains
status: public
status: public
title: 'Keep the dirt: tainted TreeKEM, adaptively and actively secure continuous
group key agreement'
type: conference
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2021'
...
---
_id: '10044'
abstract:
- lang: eng
text: We show that Yao’s garbling scheme is adaptively indistinguishable for the
class of Boolean circuits of size S and treewidth w with only a S^O(w) loss in
security. For instance, circuits with constant treewidth are as a result adaptively
indistinguishable with only a polynomial loss. This (partially) complements a
negative result of Applebaum et al. (Crypto 2013), which showed (assuming one-way
functions) that Yao’s garbling scheme cannot be adaptively simulatable. As main
technical contributions, we introduce a new pebble game that abstracts out our
security reduction and then present a pebbling strategy for this game where the
number of pebbles used is roughly O(d w log(S)), d being the fan-out of the circuit.
The design of the strategy relies on separators, a graph-theoretic notion with
connections to circuit complexity.
acknowledgement: 'We would like to thank Daniel Wichs for helpful discussions on the
landscape of adaptive security of Yao’s garbling. '
article_number: 2021/926
article_processing_charge: No
author:
- first_name: Chethan
full_name: Kamath Hosdurg, Chethan
id: 4BD3F30E-F248-11E8-B48F-1D18A9856A87
last_name: Kamath Hosdurg
- first_name: Karen
full_name: Klein, Karen
id: 3E83A2F8-F248-11E8-B48F-1D18A9856A87
last_name: Klein
- first_name: Krzysztof Z
full_name: Pietrzak, Krzysztof Z
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
citation:
ama: 'Kamath Hosdurg C, Klein K, Pietrzak KZ. On treewidth, separators and Yao’s
garbling. In: 19th Theory of Cryptography Conference 2021. International
Association for Cryptologic Research; 2021.'
apa: 'Kamath Hosdurg, C., Klein, K., & Pietrzak, K. Z. (2021). On treewidth,
separators and Yao’s garbling. In 19th Theory of Cryptography Conference 2021.
Raleigh, NC, United States: International Association for Cryptologic Research.'
chicago: Kamath Hosdurg, Chethan, Karen Klein, and Krzysztof Z Pietrzak. “On Treewidth,
Separators and Yao’s Garbling.” In 19th Theory of Cryptography Conference 2021.
International Association for Cryptologic Research, 2021.
ieee: C. Kamath Hosdurg, K. Klein, and K. Z. Pietrzak, “On treewidth, separators
and Yao’s garbling,” in 19th Theory of Cryptography Conference 2021, Raleigh,
NC, United States, 2021.
ista: 'Kamath Hosdurg C, Klein K, Pietrzak KZ. 2021. On treewidth, separators and
Yao’s garbling. 19th Theory of Cryptography Conference 2021. TCC: Theory of Cryptography
Conference, 2021/926.'
mla: Kamath Hosdurg, Chethan, et al. “On Treewidth, Separators and Yao’s Garbling.”
19th Theory of Cryptography Conference 2021, 2021/926, International Association
for Cryptologic Research, 2021.
short: C. Kamath Hosdurg, K. Klein, K.Z. Pietrzak, in:, 19th Theory of Cryptography
Conference 2021, International Association for Cryptologic Research, 2021.
conference:
end_date: 2021-11-11
location: Raleigh, NC, United States
name: 'TCC: Theory of Cryptography Conference'
start_date: 2021-11-08
date_created: 2021-09-24T12:01:34Z
date_published: 2021-07-08T00:00:00Z
date_updated: 2023-09-07T13:32:11Z
day: '08'
department:
- _id: KrPi
ec_funded: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://eprint.iacr.org/2021/926
month: '07'
oa: 1
oa_version: Preprint
project:
- _id: 258AA5B2-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '682815'
name: Teaching Old Crypto New Tricks
publication: 19th Theory of Cryptography Conference 2021
publication_status: published
publisher: International Association for Cryptologic Research
quality_controlled: '1'
related_material:
record:
- id: '10409'
relation: later_version
status: public
- id: '10035'
relation: dissertation_contains
status: public
status: public
title: On treewidth, separators and Yao's garbling
type: conference
user_id: 8b945eb4-e2f2-11eb-945a-df72226e66a9
year: '2021'
...
---
_id: '10422'
abstract:
- lang: eng
text: Those who aim to devise new materials with desirable properties usually examine
present methods first. However, they will find out that some approaches can exist
only conceptually without high chances to become practically useful. It seems
that a numerical technique called automatic differentiation together with increasing
supply of computational accelerators will soon shift many methods of the material
design from the category ”unimaginable” to the category ”expensive but possible”.
Approach we suggest is not an exception. Our overall goal is to have an efficient
and generalizable approach allowing to solve inverse design problems. In this
thesis we scratch its surface. We consider jammed systems of identical particles.
And ask ourselves how the shape of those particles (or the parameters codifying
it) may affect mechanical properties of the system. An indispensable part of reaching
the answer is an appropriate particle parametrization. We come up with a simple,
yet generalizable and purposeful scheme for it. Using our generalizable shape
parameterization, we simulate the formation of a solid composed of pentagonal-like
particles and measure anisotropy in the resulting elastic response. Through automatic
differentiation techniques, we directly connect the shape parameters with the
elastic response. Interestingly, for our system we find that less isotropic particles
lead to a more isotropic elastic response. Together with other results known about
our method it seems that it can be successfully generalized for different inverse
design problems.
alternative_title:
- ISTA Master's Thesis
article_processing_charge: No
author:
- first_name: Anton
full_name: Piankov, Anton
id: 865E3C26-AA8C-11E9-A409-C4C4E5697425
last_name: Piankov
citation:
ama: Piankov A. Towards designer materials using customizable particle shape. 2021.
doi:10.15479/at:ista:10422
apa: Piankov, A. (2021). Towards designer materials using customizable particle
shape. Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:10422
chicago: Piankov, Anton. “Towards Designer Materials Using Customizable Particle
Shape.” Institute of Science and Technology Austria, 2021. https://doi.org/10.15479/at:ista:10422.
ieee: A. Piankov, “Towards designer materials using customizable particle shape,”
Institute of Science and Technology Austria, 2021.
ista: Piankov A. 2021. Towards designer materials using customizable particle shape.
Institute of Science and Technology Austria.
mla: Piankov, Anton. Towards Designer Materials Using Customizable Particle Shape.
Institute of Science and Technology Austria, 2021, doi:10.15479/at:ista:10422.
short: A. Piankov, Towards Designer Materials Using Customizable Particle Shape,
Institute of Science and Technology Austria, 2021.
date_created: 2021-12-07T10:48:06Z
date_published: 2021-12-07T00:00:00Z
date_updated: 2023-09-07T13:34:12Z
day: '07'
ddc:
- '530'
degree_awarded: MS
department:
- _id: GradSch
- _id: CaGo
doi: 10.15479/at:ista:10422
file:
- access_level: closed
checksum: 114e8f4b2c002c6c352416c12de2c695
content_type: application/x-zip-compressed
creator: cchlebak
date_created: 2021-12-07T11:13:52Z
date_updated: 2022-03-10T12:10:25Z
file_id: '10424'
file_name: Thesis.zip
file_size: 394018
relation: source_file
- access_level: closed
checksum: cd15ae991ced352a9959815f794e657c
content_type: application/vnd.openxmlformats-officedocument.wordprocessingml.document
creator: cchlebak
date_created: 2021-12-07T11:14:01Z
date_updated: 2022-03-10T12:10:25Z
file_id: '10425'
file_name: Preliminary_pages_Piankov.docx
file_size: 47638
relation: source_file
- access_level: open_access
checksum: e6899c798b75ba42fab9822bce309050
content_type: application/pdf
creator: cchlebak
date_created: 2021-12-07T11:20:35Z
date_updated: 2021-12-07T11:20:35Z
file_id: '10426'
file_name: 2021_Piankov_combined.pdf
file_size: 484965
relation: main_file
success: 1
file_date_updated: 2022-03-10T12:10:25Z
has_accepted_license: '1'
language:
- iso: eng
month: '12'
oa: 1
oa_version: Published Version
publication_identifier:
issn:
- 2791-4585
publication_status: published
publisher: Institute of Science and Technology Austria
status: public
supervisor:
- first_name: Carl Peter
full_name: Goodrich, Carl Peter
id: EB352CD2-F68A-11E9-89C5-A432E6697425
last_name: Goodrich
orcid: 0000-0002-1307-5074
title: Towards designer materials using customizable particle shape
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2021'
...
---
_id: '10803'
abstract:
- lang: eng
text: Given the abundance of applications of ranking in recent years, addressing
fairness concerns around automated ranking systems becomes necessary for increasing
the trust among end-users. Previous work on fair ranking has mostly focused on
application-specific fairness notions, often tailored to online advertising, and
it rarely considers learning as part of the process. In this work, we show how
to transfer numerous fairness notions from binary classification to a learning
to rank setting. Our formalism allows us to design methods for incorporating fairness
objectives with provable generalization guarantees. An extensive experimental
evaluation shows that our method can improve ranking fairness substantially with
no or only little loss of model quality.
article_number: '2102.05996'
article_processing_charge: No
author:
- first_name: Nikola H
full_name: Konstantinov, Nikola H
id: 4B9D76E4-F248-11E8-B48F-1D18A9856A87
last_name: Konstantinov
- first_name: Christoph
full_name: Lampert, Christoph
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0002-4561-241X
citation:
ama: Konstantinov NH, Lampert C. Fairness through regularization for learning to
rank. arXiv. doi:10.48550/arXiv.2102.05996
apa: Konstantinov, N. H., & Lampert, C. (n.d.). Fairness through regularization
for learning to rank. arXiv. https://doi.org/10.48550/arXiv.2102.05996
chicago: Konstantinov, Nikola H, and Christoph Lampert. “Fairness through Regularization
for Learning to Rank.” ArXiv, n.d. https://doi.org/10.48550/arXiv.2102.05996.
ieee: N. H. Konstantinov and C. Lampert, “Fairness through regularization for learning
to rank,” arXiv. .
ista: Konstantinov NH, Lampert C. Fairness through regularization for learning to
rank. arXiv, 2102.05996.
mla: Konstantinov, Nikola H., and Christoph Lampert. “Fairness through Regularization
for Learning to Rank.” ArXiv, 2102.05996, doi:10.48550/arXiv.2102.05996.
short: N.H. Konstantinov, C. Lampert, ArXiv (n.d.).
date_created: 2022-02-28T14:13:59Z
date_published: 2021-06-07T00:00:00Z
date_updated: 2023-09-07T13:42:08Z
day: '07'
department:
- _id: ChLa
doi: 10.48550/arXiv.2102.05996
external_id:
arxiv:
- '2102.05996'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2102.05996
month: '06'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
related_material:
record:
- id: '10799'
relation: dissertation_contains
status: public
status: public
title: Fairness through regularization for learning to rank
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '10762'
abstract:
- lang: eng
text: Methods inspired from machine learning have recently attracted great interest
in the computational study of quantum many-particle systems. So far, however,
it has proven challenging to deal with microscopic models in which the total number
of particles is not conserved. To address this issue, we propose a new variant
of neural network states, which we term neural coherent states. Taking the Fröhlich
impurity model as a case study, we show that neural coherent states can learn
the ground state of non-additive systems very well. In particular, we observe
substantial improvement over the standard coherent state estimates in the most
challenging intermediate coupling regime. Our approach is generic and does not
assume specific details of the system, suggesting wide applications.
acknowledgement: "We acknowledge fruitful discussions with Giacomo Bighin, Giammarco
Fabiani, Areg Ghazaryan, Christoph\r\nLampert, and Artem Volosniev at various stages
of this work. W.R. is a recipient of a DOC Fellowship of the\r\nAustrian Academy
of Sciences and has received funding from the EU Horizon 2020 programme under the
Marie\r\nSkłodowska-Curie Grant Agreement No. 665385. M. L. acknowledges support
by the European Research Council (ERC) Starting Grant No. 801770 (ANGULON). This
work is part of the Shell-NWO/FOM-initiative “Computational sciences for energy
research” of Shell and Chemical Sciences, Earth and Life Sciences, Physical Sciences,
FOM and STW."
article_processing_charge: No
author:
- first_name: Wojciech
full_name: Rzadkowski, Wojciech
id: 48C55298-F248-11E8-B48F-1D18A9856A87
last_name: Rzadkowski
orcid: 0000-0002-1106-4419
- first_name: Mikhail
full_name: Lemeshko, Mikhail
id: 37CB05FA-F248-11E8-B48F-1D18A9856A87
last_name: Lemeshko
orcid: 0000-0002-6990-7802
- first_name: Johan H.
full_name: Mentink, Johan H.
last_name: Mentink
citation:
ama: Rzadkowski W, Lemeshko M, Mentink JH. Artificial neural network states for
non-additive systems. arXiv. doi:10.48550/arXiv.2105.15193
apa: Rzadkowski, W., Lemeshko, M., & Mentink, J. H. (n.d.). Artificial neural
network states for non-additive systems. arXiv. https://doi.org/10.48550/arXiv.2105.15193
chicago: Rzadkowski, Wojciech, Mikhail Lemeshko, and Johan H. Mentink. “Artificial
Neural Network States for Non-Additive Systems.” ArXiv, n.d. https://doi.org/10.48550/arXiv.2105.15193.
ieee: W. Rzadkowski, M. Lemeshko, and J. H. Mentink, “Artificial neural network
states for non-additive systems,” arXiv. .
ista: Rzadkowski W, Lemeshko M, Mentink JH. Artificial neural network states for
non-additive systems. arXiv, 10.48550/arXiv.2105.15193.
mla: Rzadkowski, Wojciech, et al. “Artificial Neural Network States for Non-Additive
Systems.” ArXiv, doi:10.48550/arXiv.2105.15193.
short: W. Rzadkowski, M. Lemeshko, J.H. Mentink, ArXiv (n.d.).
date_created: 2022-02-17T11:18:57Z
date_published: 2021-05-31T00:00:00Z
date_updated: 2023-09-07T13:44:16Z
day: '31'
department:
- _id: MiLe
doi: 10.48550/arXiv.2105.15193
ec_funded: 1
external_id:
arxiv:
- '2105.15193'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2105.15193
month: '05'
oa: 1
oa_version: Preprint
page: '2105.15193'
project:
- _id: 2688CF98-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '801770'
name: 'Angulon: physics and applications of a new quasiparticle'
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '665385'
name: International IST Doctoral Program
publication: arXiv
publication_status: submitted
related_material:
record:
- id: '10759'
relation: dissertation_contains
status: public
status: public
title: Artificial neural network states for non-additive systems
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '9418'
abstract:
- lang: eng
text: "Deep learning is best known for its empirical success across a wide range
of applications\r\nspanning computer vision, natural language processing and speech.
Of equal significance,\r\nthough perhaps less known, are its ramifications for
learning theory: deep networks have\r\nbeen observed to perform surprisingly well
in the high-capacity regime, aka the overfitting\r\nor underspecified regime.
Classically, this regime on the far right of the bias-variance curve\r\nis associated
with poor generalisation; however, recent experiments with deep networks\r\nchallenge
this view.\r\n\r\nThis thesis is devoted to investigating various aspects of underspecification
in deep learning.\r\nFirst, we argue that deep learning models are underspecified
on two levels: a) any given\r\ntraining dataset can be fit by many different functions,
and b) any given function can be\r\nexpressed by many different parameter configurations.
We refer to the second kind of\r\nunderspecification as parameterisation redundancy
and we precisely characterise its extent.\r\nSecond, we characterise the implicit
criteria (the inductive bias) that guide learning in the\r\nunderspecified regime.
Specifically, we consider a nonlinear but tractable classification\r\nsetting,
and show that given the choice, neural networks learn classifiers with a large
margin.\r\nThird, we consider learning scenarios where the inductive bias is not
by itself sufficient to\r\ndeal with underspecification. We then study different
ways of ‘tightening the specification’: i)\r\nIn the setting of representation
learning with variational autoencoders, we propose a hand-\r\ncrafted regulariser
based on mutual information. ii) In the setting of binary classification, we\r\nconsider
soft-label (real-valued) supervision. We derive a generalisation bound for linear\r\nnetworks
supervised in this way and verify that soft labels facilitate fast learning. Finally,
we\r\nexplore an application of soft-label supervision to the training of multi-exit
models."
acknowledged_ssus:
- _id: ScienComp
- _id: CampIT
- _id: E-Lib
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Phuong
full_name: Bui Thi Mai, Phuong
id: 3EC6EE64-F248-11E8-B48F-1D18A9856A87
last_name: Bui Thi Mai
citation:
ama: Phuong M. Underspecification in deep learning. 2021. doi:10.15479/AT:ISTA:9418
apa: Phuong, M. (2021). Underspecification in deep learning. Institute of
Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:9418
chicago: Phuong, Mary. “Underspecification in Deep Learning.” Institute of Science
and Technology Austria, 2021. https://doi.org/10.15479/AT:ISTA:9418.
ieee: M. Phuong, “Underspecification in deep learning,” Institute of Science and
Technology Austria, 2021.
ista: Phuong M. 2021. Underspecification in deep learning. Institute of Science
and Technology Austria.
mla: Phuong, Mary. Underspecification in Deep Learning. Institute of Science
and Technology Austria, 2021, doi:10.15479/AT:ISTA:9418.
short: M. Phuong, Underspecification in Deep Learning, Institute of Science and
Technology Austria, 2021.
date_created: 2021-05-24T13:06:23Z
date_published: 2021-05-30T00:00:00Z
date_updated: 2023-09-08T11:11:12Z
day: '30'
ddc:
- '000'
degree_awarded: PhD
department:
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- _id: ChLa
doi: 10.15479/AT:ISTA:9418
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content_type: application/zip
creator: bphuong
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date_updated: 2021-05-24T11:56:02Z
file_id: '9420'
file_name: thesis.zip
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file_date_updated: 2021-05-24T11:56:02Z
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language:
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month: '05'
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oa_version: Published Version
page: '125'
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
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- id: '7435'
relation: part_of_dissertation
status: deleted
- id: '7481'
relation: part_of_dissertation
status: public
- id: '9416'
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status: public
- id: '7479'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Christoph
full_name: Lampert, Christoph
id: 40C20FD2-F248-11E8-B48F-1D18A9856A87
last_name: Lampert
orcid: 0000-0001-8622-7887
title: Underspecification in deep learning
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2021'
...
---
_id: '14278'
abstract:
- lang: eng
text: 'The Birkhoff conjecture says that the boundary of a strictly convex integrable
billiard table is necessarily an ellipse. In this article, we consider a stronger
notion of integrability, namely, integrability close to the boundary, and prove
a local version of this conjecture: a small perturbation of almost every ellipse
that preserves integrability near the boundary, is itself an ellipse. We apply
this result to study local spectral rigidity of ellipses using the connection
between the wave trace of the Laplacian and the dynamics near the boundary and
establish rigidity for almost all of them.'
article_number: '2111.12171'
article_processing_charge: No
author:
- first_name: Illya
full_name: Koval, Illya
id: 2eed1f3b-896a-11ed-bdf8-93c7c4bf159e
last_name: Koval
citation:
ama: Koval I. Local strong Birkhoff conjecture and local spectral rigidity of almost
every ellipse. arXiv. doi:10.48550/ARXIV.2111.12171
apa: Koval, I. (n.d.). Local strong Birkhoff conjecture and local spectral rigidity
of almost every ellipse. arXiv. https://doi.org/10.48550/ARXIV.2111.12171
chicago: Koval, Illya. “Local Strong Birkhoff Conjecture and Local Spectral Rigidity
of Almost Every Ellipse.” ArXiv, n.d. https://doi.org/10.48550/ARXIV.2111.12171.
ieee: I. Koval, “Local strong Birkhoff conjecture and local spectral rigidity of
almost every ellipse,” arXiv. .
ista: Koval I. Local strong Birkhoff conjecture and local spectral rigidity of almost
every ellipse. arXiv, 2111.12171.
mla: Koval, Illya. “Local Strong Birkhoff Conjecture and Local Spectral Rigidity
of Almost Every Ellipse.” ArXiv, 2111.12171, doi:10.48550/ARXIV.2111.12171.
short: I. Koval, ArXiv (n.d.).
date_created: 2023-09-06T08:35:43Z
date_published: 2021-11-23T00:00:00Z
date_updated: 2023-09-15T06:44:00Z
day: '23'
department:
- _id: GradSch
doi: 10.48550/ARXIV.2111.12171
external_id:
arxiv:
- '2111.12171'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.48550/arXiv.2111.12171
month: '11'
oa: 1
oa_version: Preprint
publication: arXiv
publication_status: submitted
status: public
title: Local strong Birkhoff conjecture and local spectral rigidity of almost every
ellipse
type: preprint
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '10199'
abstract:
- lang: eng
text: The design and verification of concurrent systems remains an open challenge
due to the non-determinism that arises from the inter-process communication. In
particular, concurrent programs are notoriously difficult both to be written correctly
and to be analyzed formally, as complex thread interaction has to be accounted
for. The difficulties are further exacerbated when concurrent programs get executed
on modern-day hardware, which contains various buffering and caching mechanisms
for efficiency reasons. This causes further subtle non-determinism, which can
often produce very unintuitive behavior of the concurrent programs. Model checking
is at the forefront of tackling the verification problem, where the task is to
decide, given as input a concurrent system and a desired property, whether the
system satisfies the property. The inherent state-space explosion problem in model
checking of concurrent systems causes naïve explicit methods not to scale, thus
more inventive methods are required. One such method is stateless model checking
(SMC), which explores in memory-efficient manner the program executions rather
than the states of the program. State-of-the-art SMC is typically coupled with
partial order reduction (POR) techniques, which argue that certain executions
provably produce identical system behavior, thus limiting the amount of executions
one needs to explore in order to cover all possible behaviors. Another method
to tackle the state-space explosion is symbolic model checking, where the considered
techniques operate on a succinct implicit representation of the input system rather
than explicitly accessing the system. In this thesis we present new techniques
for verification of concurrent systems. We present several novel POR methods for
SMC of concurrent programs under various models of semantics, some of which account
for write-buffering mechanisms. Additionally, we present novel algorithms for
symbolic model checking of finite-state concurrent systems, where the desired
property of the systems is to ensure a formally defined notion of fairness.
acknowledged_ssus:
- _id: SSU
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Viktor
full_name: Toman, Viktor
id: 3AF3DA7C-F248-11E8-B48F-1D18A9856A87
last_name: Toman
orcid: 0000-0001-9036-063X
citation:
ama: Toman V. Improved verification techniques for concurrent systems. 2021. doi:10.15479/at:ista:10199
apa: Toman, V. (2021). Improved verification techniques for concurrent systems.
Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:10199
chicago: Toman, Viktor. “Improved Verification Techniques for Concurrent Systems.”
Institute of Science and Technology Austria, 2021. https://doi.org/10.15479/at:ista:10199.
ieee: V. Toman, “Improved verification techniques for concurrent systems,” Institute
of Science and Technology Austria, 2021.
ista: Toman V. 2021. Improved verification techniques for concurrent systems. Institute
of Science and Technology Austria.
mla: Toman, Viktor. Improved Verification Techniques for Concurrent Systems.
Institute of Science and Technology Austria, 2021, doi:10.15479/at:ista:10199.
short: V. Toman, Improved Verification Techniques for Concurrent Systems, Institute
of Science and Technology Austria, 2021.
date_created: 2021-10-29T20:09:01Z
date_published: 2021-10-31T00:00:00Z
date_updated: 2023-09-19T09:59:54Z
day: '31'
ddc:
- '000'
degree_awarded: PhD
department:
- _id: GradSch
- _id: KrCh
doi: 10.15479/at:ista:10199
ec_funded: 1
file:
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checksum: 4f412a1ee60952221b499a4b1268df35
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creator: vtoman
date_created: 2021-11-08T14:12:22Z
date_updated: 2021-11-08T14:12:22Z
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content_type: application/zip
creator: vtoman
date_created: 2021-11-08T14:12:46Z
date_updated: 2021-11-09T09:00:50Z
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file_name: toman_thesis.zip
file_size: 8616056
relation: source_file
file_date_updated: 2021-11-09T09:00:50Z
has_accepted_license: '1'
keyword:
- concurrency
- verification
- model checking
language:
- iso: eng
month: '10'
oa: 1
oa_version: Published Version
page: '166'
project:
- _id: 2564DBCA-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '665385'
name: International IST Doctoral Program
- _id: 25F2ACDE-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S11402-N23
name: Rigorous Systems Engineering
- _id: 25892FC0-B435-11E9-9278-68D0E5697425
grant_number: ICT15-003
name: Efficient Algorithms for Computer Aided Verification
- _id: 0599E47C-7A3F-11EA-A408-12923DDC885E
call_identifier: H2020
grant_number: '863818'
name: 'Formal Methods for Stochastic Models: Algorithms and Applications'
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
related_material:
record:
- id: '10190'
relation: part_of_dissertation
status: public
- id: '10191'
relation: part_of_dissertation
status: public
- id: '9987'
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status: public
- id: '141'
relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
title: Improved verification techniques for concurrent systems
type: dissertation
user_id: c635000d-4b10-11ee-a964-aac5a93f6ac1
year: '2021'
...
---
_id: '8429'
abstract:
- lang: eng
text: We develop a Bayesian model (BayesRR-RC) that provides robust SNP-heritability
estimation, an alternative to marker discovery, and accurate genomic prediction,
taking 22 seconds per iteration to estimate 8.4 million SNP-effects and 78 SNP-heritability
parameters in the UK Biobank. We find that only ≤10% of the genetic variation
captured for height, body mass index, cardiovascular disease, and type 2 diabetes
is attributable to proximal regulatory regions within 10kb upstream of genes,
while 12-25% is attributed to coding regions, 32–44% to introns, and 22-28% to
distal 10-500kb upstream regions. Up to 24% of all cis and coding regions of each
chromosome are associated with each trait, with over 3,100 independent exonic
and intronic regions and over 5,400 independent regulatory regions having ≥95%
probability of contributing ≥0.001% to the genetic variance of these four traits.
Our open-source software (GMRM) provides a scalable alternative to current approaches
for biobank data.
acknowledgement: This project was funded by an SNSF Eccellenza Grant to MRR (PCEGP3-181181),
and by core funding from the Institute of Science and Technology Austria. We would
like to thank the participants of the cohort studies, and the Ecole Polytechnique
Federal Lausanne (EPFL) SCITAS for their excellent compute resources, their generosity
with their time and the kindness of their support. P.M.V. acknowledges funding from
the Australian National Health and Medical Research Council (1113400) and the Australian
Research Council (FL180100072). L.R. acknowledges funding from the Kjell & Märta
Beijer Foundation (Stockholm, Sweden). We also would like to acknowledge Simone
Rubinacci, Oliver Delanau, Alexander Terenin, Eleonora Porcu, and Mike Goddard for
their useful comments and suggestions.
article_number: '6972'
article_processing_charge: No
article_type: original
author:
- first_name: Marion
full_name: Patxot, Marion
last_name: Patxot
- first_name: Daniel
full_name: Trejo Banos, Daniel
last_name: Trejo Banos
- first_name: Athanasios
full_name: Kousathanas, Athanasios
last_name: Kousathanas
- first_name: Etienne J
full_name: Orliac, Etienne J
last_name: Orliac
- first_name: Sven E
full_name: Ojavee, Sven E
last_name: Ojavee
- first_name: Gerhard
full_name: Moser, Gerhard
last_name: Moser
- first_name: Julia
full_name: Sidorenko, Julia
last_name: Sidorenko
- first_name: Zoltan
full_name: Kutalik, Zoltan
last_name: Kutalik
- first_name: Reedik
full_name: Magi, Reedik
last_name: Magi
- first_name: Peter M
full_name: Visscher, Peter M
last_name: Visscher
- first_name: Lars
full_name: Ronnegard, Lars
last_name: Ronnegard
- first_name: Matthew Richard
full_name: Robinson, Matthew Richard
id: E5D42276-F5DA-11E9-8E24-6303E6697425
last_name: Robinson
orcid: 0000-0001-8982-8813
citation:
ama: Patxot M, Trejo Banos D, Kousathanas A, et al. Probabilistic inference of the
genetic architecture underlying functional enrichment of complex traits. Nature
Communications. 2021;12(1). doi:10.1038/s41467-021-27258-9
apa: Patxot, M., Trejo Banos, D., Kousathanas, A., Orliac, E. J., Ojavee, S. E.,
Moser, G., … Robinson, M. R. (2021). Probabilistic inference of the genetic architecture
underlying functional enrichment of complex traits. Nature Communications.
Springer Nature. https://doi.org/10.1038/s41467-021-27258-9
chicago: Patxot, Marion, Daniel Trejo Banos, Athanasios Kousathanas, Etienne J Orliac,
Sven E Ojavee, Gerhard Moser, Julia Sidorenko, et al. “Probabilistic Inference
of the Genetic Architecture Underlying Functional Enrichment of Complex Traits.”
Nature Communications. Springer Nature, 2021. https://doi.org/10.1038/s41467-021-27258-9.
ieee: M. Patxot et al., “Probabilistic inference of the genetic architecture
underlying functional enrichment of complex traits,” Nature Communications,
vol. 12, no. 1. Springer Nature, 2021.
ista: Patxot M, Trejo Banos D, Kousathanas A, Orliac EJ, Ojavee SE, Moser G, Sidorenko
J, Kutalik Z, Magi R, Visscher PM, Ronnegard L, Robinson MR. 2021. Probabilistic
inference of the genetic architecture underlying functional enrichment of complex
traits. Nature Communications. 12(1), 6972.
mla: Patxot, Marion, et al. “Probabilistic Inference of the Genetic Architecture
Underlying Functional Enrichment of Complex Traits.” Nature Communications,
vol. 12, no. 1, 6972, Springer Nature, 2021, doi:10.1038/s41467-021-27258-9.
short: M. Patxot, D. Trejo Banos, A. Kousathanas, E.J. Orliac, S.E. Ojavee, G. Moser,
J. Sidorenko, Z. Kutalik, R. Magi, P.M. Visscher, L. Ronnegard, M.R. Robinson,
Nature Communications 12 (2021).
date_created: 2020-09-17T10:52:38Z
date_published: 2021-11-30T00:00:00Z
date_updated: 2023-09-26T10:36:14Z
day: '30'
ddc:
- '610'
department:
- _id: MaRo
doi: 10.1038/s41467-021-27258-9
external_id:
isi:
- '000724450600023'
file:
- access_level: open_access
checksum: 384681be17aff902c149a48f52d13d4f
content_type: application/pdf
creator: cchlebak
date_created: 2021-12-06T07:47:11Z
date_updated: 2021-12-06T07:47:11Z
file_id: '10419'
file_name: 2021_NatComm_Paxtot.pdf
file_size: 6519771
relation: main_file
success: 1
file_date_updated: 2021-12-06T07:47:11Z
has_accepted_license: '1'
intvolume: ' 12'
isi: 1
issue: '1'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Published Version
publication: Nature Communications
publication_identifier:
eissn:
- 2041-1723
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
record:
- id: '13063'
relation: research_data
status: public
scopus_import: '1'
status: public
title: Probabilistic inference of the genetic architecture underlying functional enrichment
of complex traits
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: journal_article
user_id: 4359f0d1-fa6c-11eb-b949-802e58b17ae8
volume: 12
year: '2021'
...
---
_id: '10854'
abstract:
- lang: eng
text: "Consider a distributed task where the communication network is fixed but
the local inputs given to the nodes of the distributed system may change over
time. In this work, we explore the following question: if some of the local inputs
change, can an existing solution be updated efficiently, in a dynamic and distributed
manner?\r\nTo address this question, we define the batch dynamic CONGEST model
in which we are given a bandwidth-limited communication network and a dynamic
edge labelling defines the problem input. The task is to maintain a solution to
a graph problem on the labelled graph under batch changes. We investigate, when
a batch of alpha edge label changes arrive, - how much time as a function of alpha
we need to update an existing solution, and - how much information the nodes have
to keep in local memory between batches in order to update the solution quickly.\r\nOur
work lays the foundations for the theory of input-dynamic distributed network
algorithms. We give a general picture of the complexity landscape in this model,
design both universal algorithms and algorithms for concrete problems, and present
a general framework for lower bounds. The diverse time complexity of our model
spans from constant time, through time polynomial in alpha, and to alpha time,
which we show to be enough for any task."
acknowledgement: We thank Jukka Suomela for discussions. We also thank our shepherd
Mohammad Hajiesmaili and the reviewers for their time and suggestions on how to
improve the paper. This project has received funding from the European Research
Council (ERC) under the European Union’s Horizon 2020 research and innovation programme
(grant agreement No 805223 ScaleML), from the European Union’s Horizon 2020 research
and innovation programme under the Marie Skłodowska–Curie grant agreement No. 840605,
from the Vienna Science and Technology Fund (WWTF) project WHATIF, ICT19-045, 2020-2024,
and from the Austrian Science Fund (FWF) and netIDEE SCIENCE project P 33775-N.
article_processing_charge: No
author:
- first_name: Klaus-Tycho
full_name: Foerster, Klaus-Tycho
last_name: Foerster
- first_name: Janne
full_name: Korhonen, Janne
id: C5402D42-15BC-11E9-A202-CA2BE6697425
last_name: Korhonen
- first_name: Ami
full_name: Paz, Ami
last_name: Paz
- first_name: Joel
full_name: Rybicki, Joel
id: 334EFD2E-F248-11E8-B48F-1D18A9856A87
last_name: Rybicki
orcid: 0000-0002-6432-6646
- first_name: Stefan
full_name: Schmid, Stefan
last_name: Schmid
citation:
ama: 'Foerster K-T, Korhonen J, Paz A, Rybicki J, Schmid S. Input-dynamic distributed
algorithms for communication networks. In: Abstract Proceedings of the 2021
ACM SIGMETRICS / International Conference on Measurement and Modeling of Computer
Systems. Association for Computing Machinery; 2021:71-72. doi:10.1145/3410220.3453923'
apa: 'Foerster, K.-T., Korhonen, J., Paz, A., Rybicki, J., & Schmid, S. (2021).
Input-dynamic distributed algorithms for communication networks. In Abstract
Proceedings of the 2021 ACM SIGMETRICS / International Conference on Measurement
and Modeling of Computer Systems (pp. 71–72). Virtual, Online: Association
for Computing Machinery. https://doi.org/10.1145/3410220.3453923'
chicago: Foerster, Klaus-Tycho, Janne Korhonen, Ami Paz, Joel Rybicki, and Stefan
Schmid. “Input-Dynamic Distributed Algorithms for Communication Networks.” In
Abstract Proceedings of the 2021 ACM SIGMETRICS / International Conference
on Measurement and Modeling of Computer Systems, 71–72. Association for Computing
Machinery, 2021. https://doi.org/10.1145/3410220.3453923.
ieee: K.-T. Foerster, J. Korhonen, A. Paz, J. Rybicki, and S. Schmid, “Input-dynamic
distributed algorithms for communication networks,” in Abstract Proceedings
of the 2021 ACM SIGMETRICS / International Conference on Measurement and Modeling
of Computer Systems, Virtual, Online, 2021, pp. 71–72.
ista: 'Foerster K-T, Korhonen J, Paz A, Rybicki J, Schmid S. 2021. Input-dynamic
distributed algorithms for communication networks. Abstract Proceedings of the
2021 ACM SIGMETRICS / International Conference on Measurement and Modeling of
Computer Systems. SIGMETRICS: International Conference on Measurement and Modeling
of Computer Systems, 71–72.'
mla: Foerster, Klaus-Tycho, et al. “Input-Dynamic Distributed Algorithms for Communication
Networks.” Abstract Proceedings of the 2021 ACM SIGMETRICS / International
Conference on Measurement and Modeling of Computer Systems, Association for
Computing Machinery, 2021, pp. 71–72, doi:10.1145/3410220.3453923.
short: K.-T. Foerster, J. Korhonen, A. Paz, J. Rybicki, S. Schmid, in:, Abstract
Proceedings of the 2021 ACM SIGMETRICS / International Conference on Measurement
and Modeling of Computer Systems, Association for Computing Machinery, 2021, pp.
71–72.
conference:
end_date: 2021-06-18
location: Virtual, Online
name: 'SIGMETRICS: International Conference on Measurement and Modeling of Computer
Systems'
start_date: 2021-06-14
date_created: 2022-03-18T08:48:41Z
date_published: 2021-05-01T00:00:00Z
date_updated: 2023-09-26T10:40:55Z
day: '01'
department:
- _id: DaAl
doi: 10.1145/3410220.3453923
ec_funded: 1
external_id:
arxiv:
- '2005.07637'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2005.07637
month: '05'
oa: 1
oa_version: Preprint
page: 71-72
project:
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '805223'
name: Elastic Coordination for Scalable Machine Learning
- _id: 26A5D39A-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '840605'
name: Coordination in constrained and natural distributed systems
publication: Abstract Proceedings of the 2021 ACM SIGMETRICS / International Conference
on Measurement and Modeling of Computer Systems
publication_identifier:
isbn:
- '9781450380720'
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
related_material:
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- id: '10855'
relation: extended_version
status: public
scopus_import: '1'
status: public
title: Input-dynamic distributed algorithms for communication networks
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '10855'
abstract:
- lang: eng
text: 'Consider a distributed task where the communication network is fixed but
the local inputs given to the nodes of the distributed system may change over
time. In this work, we explore the following question: if some of the local inputs
change, can an existing solution be updated efficiently, in a dynamic and distributed
manner? To address this question, we define the batch dynamic \congest model in
which we are given a bandwidth-limited communication network and a dynamic edge
labelling defines the problem input. The task is to maintain a solution to a graph
problem on the labeled graph under batch changes. We investigate, when a batch
of α edge label changes arrive, \beginitemize \item how much time as a function
of α we need to update an existing solution, and \item how much information the
nodes have to keep in local memory between batches in order to update the solution
quickly. \enditemize Our work lays the foundations for the theory of input-dynamic
distributed network algorithms. We give a general picture of the complexity landscape
in this model, design both universal algorithms and algorithms for concrete problems,
and present a general framework for lower bounds. In particular, we derive non-trivial
upper bounds for two selected, contrasting problems: maintaining a minimum spanning
tree and detecting cliques.'
acknowledgement: "We thank Jukka Suomela for discussions. We also thank our shepherd
Mohammad Hajiesmaili\r\nand the reviewers for their time and suggestions on how
to improve the paper. This project\r\nhas received funding from the European Research
Council (ERC) under the European Union’s\r\nHorizon 2020 research and innovation
programme (grant agreement No 805223 ScaleML), from the European Union’s Horizon
2020 research and innovation programme under the Marie\r\nSk lodowska–Curie grant
agreement No. 840605, from the Vienna Science and Technology Fund (WWTF) project
WHATIF, ICT19-045, 2020-2024, and from the Austrian Science Fund (FWF) and netIDEE
SCIENCE project P 33775-N."
article_processing_charge: No
article_type: original
author:
- first_name: Klaus-Tycho
full_name: Foerster, Klaus-Tycho
last_name: Foerster
- first_name: Janne
full_name: Korhonen, Janne
id: C5402D42-15BC-11E9-A202-CA2BE6697425
last_name: Korhonen
- first_name: Ami
full_name: Paz, Ami
last_name: Paz
- first_name: Joel
full_name: Rybicki, Joel
id: 334EFD2E-F248-11E8-B48F-1D18A9856A87
last_name: Rybicki
orcid: 0000-0002-6432-6646
- first_name: Stefan
full_name: Schmid, Stefan
last_name: Schmid
citation:
ama: Foerster K-T, Korhonen J, Paz A, Rybicki J, Schmid S. Input-dynamic distributed
algorithms for communication networks. Proceedings of the ACM on Measurement
and Analysis of Computing Systems. 2021;5(1):1-33. doi:10.1145/3447384
apa: Foerster, K.-T., Korhonen, J., Paz, A., Rybicki, J., & Schmid, S. (2021).
Input-dynamic distributed algorithms for communication networks. Proceedings
of the ACM on Measurement and Analysis of Computing Systems. Association for
Computing Machinery. https://doi.org/10.1145/3447384
chicago: Foerster, Klaus-Tycho, Janne Korhonen, Ami Paz, Joel Rybicki, and Stefan
Schmid. “Input-Dynamic Distributed Algorithms for Communication Networks.” Proceedings
of the ACM on Measurement and Analysis of Computing Systems. Association for
Computing Machinery, 2021. https://doi.org/10.1145/3447384.
ieee: K.-T. Foerster, J. Korhonen, A. Paz, J. Rybicki, and S. Schmid, “Input-dynamic
distributed algorithms for communication networks,” Proceedings of the ACM
on Measurement and Analysis of Computing Systems, vol. 5, no. 1. Association
for Computing Machinery, pp. 1–33, 2021.
ista: Foerster K-T, Korhonen J, Paz A, Rybicki J, Schmid S. 2021. Input-dynamic
distributed algorithms for communication networks. Proceedings of the ACM on Measurement
and Analysis of Computing Systems. 5(1), 1–33.
mla: Foerster, Klaus-Tycho, et al. “Input-Dynamic Distributed Algorithms for Communication
Networks.” Proceedings of the ACM on Measurement and Analysis of Computing
Systems, vol. 5, no. 1, Association for Computing Machinery, 2021, pp. 1–33,
doi:10.1145/3447384.
short: K.-T. Foerster, J. Korhonen, A. Paz, J. Rybicki, S. Schmid, Proceedings of
the ACM on Measurement and Analysis of Computing Systems 5 (2021) 1–33.
date_created: 2022-03-18T09:10:27Z
date_published: 2021-03-01T00:00:00Z
date_updated: 2023-09-26T10:40:55Z
day: '01'
department:
- _id: DaAl
doi: 10.1145/3447384
ec_funded: 1
external_id:
arxiv:
- '2005.07637'
intvolume: ' 5'
issue: '1'
keyword:
- Computer Networks and Communications
- Hardware and Architecture
- Safety
- Risk
- Reliability and Quality
- Computer Science (miscellaneous)
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2005.07637
month: '03'
oa: 1
oa_version: Preprint
page: 1-33
project:
- _id: 26A5D39A-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '840605'
name: Coordination in constrained and natural distributed systems
- _id: 268A44D6-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '805223'
name: Elastic Coordination for Scalable Machine Learning
publication: Proceedings of the ACM on Measurement and Analysis of Computing Systems
publication_identifier:
issn:
- 2476-1249
publication_status: published
publisher: Association for Computing Machinery
quality_controlled: '1'
related_material:
record:
- id: '10854'
relation: shorter_version
status: public
scopus_import: '1'
status: public
title: Input-dynamic distributed algorithms for communication networks
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 5
year: '2021'
...
---
_id: '9293'
abstract:
- lang: eng
text: 'We consider planning problems for graphs, Markov Decision Processes (MDPs),
and games on graphs in an explicit state space. While graphs represent the most
basic planning model, MDPs represent interaction with nature and games on graphs
represent interaction with an adversarial environment. We consider two planning
problems with k different target sets: (a) the coverage problem asks whether there
is a plan for each individual target set; and (b) the sequential target reachability
problem asks whether the targets can be reached in a given sequence. For the coverage
problem, we present a linear-time algorithm for graphs, and quadratic conditional
lower bound for MDPs and games on graphs. For the sequential target problem, we
present a linear-time algorithm for graphs, a sub-quadratic algorithm for MDPs,
and a quadratic conditional lower bound for games on graphs. Our results with
conditional lower bounds, based on the boolean matrix multiplication (BMM) conjecture
and strong exponential time hypothesis (SETH), establish (i) model-separation
results showing that for the coverage problem MDPs and games on graphs are harder
than graphs, and for the sequential reachability problem games on graphs are harder
than MDPs and graphs; and (ii) problem-separation results showing that for MDPs
the coverage problem is harder than the sequential target problem.'
article_number: '103499'
article_processing_charge: No
article_type: original
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Wolfgang
full_name: Dvořák, Wolfgang
last_name: Dvořák
- first_name: Monika H
full_name: Henzinger, Monika H
id: 540c9bbd-f2de-11ec-812d-d04a5be85630
last_name: Henzinger
orcid: 0000-0002-5008-6530
- first_name: Alexander
full_name: Svozil, Alexander
last_name: Svozil
citation:
ama: Chatterjee K, Dvořák W, Henzinger MH, Svozil A. Algorithms and conditional
lower bounds for planning problems. Artificial Intelligence. 2021;297(8).
doi:10.1016/j.artint.2021.103499
apa: Chatterjee, K., Dvořák, W., Henzinger, M. H., & Svozil, A. (2021). Algorithms
and conditional lower bounds for planning problems. Artificial Intelligence.
Elsevier. https://doi.org/10.1016/j.artint.2021.103499
chicago: Chatterjee, Krishnendu, Wolfgang Dvořák, Monika H Henzinger, and Alexander
Svozil. “Algorithms and Conditional Lower Bounds for Planning Problems.” Artificial
Intelligence. Elsevier, 2021. https://doi.org/10.1016/j.artint.2021.103499.
ieee: K. Chatterjee, W. Dvořák, M. H. Henzinger, and A. Svozil, “Algorithms and
conditional lower bounds for planning problems,” Artificial Intelligence,
vol. 297, no. 8. Elsevier, 2021.
ista: Chatterjee K, Dvořák W, Henzinger MH, Svozil A. 2021. Algorithms and conditional
lower bounds for planning problems. Artificial Intelligence. 297(8), 103499.
mla: Chatterjee, Krishnendu, et al. “Algorithms and Conditional Lower Bounds for
Planning Problems.” Artificial Intelligence, vol. 297, no. 8, 103499, Elsevier,
2021, doi:10.1016/j.artint.2021.103499.
short: K. Chatterjee, W. Dvořák, M.H. Henzinger, A. Svozil, Artificial Intelligence
297 (2021).
date_created: 2021-03-28T22:01:40Z
date_published: 2021-03-16T00:00:00Z
date_updated: 2023-09-26T10:41:42Z
day: '16'
department:
- _id: KrCh
doi: 10.1016/j.artint.2021.103499
external_id:
arxiv:
- '1804.07031'
isi:
- '000657537500003'
intvolume: ' 297'
isi: 1
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1804.07031
month: '03'
oa: 1
oa_version: Preprint
publication: Artificial Intelligence
publication_identifier:
issn:
- 0004-3702
publication_status: published
publisher: Elsevier
quality_controlled: '1'
related_material:
record:
- id: '35'
relation: earlier_version
status: public
scopus_import: '1'
status: public
title: Algorithms and conditional lower bounds for planning problems
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 297
year: '2021'
...
---
_id: '13063'
abstract:
- lang: eng
text: We develop a Bayesian model (BayesRR-RC) that provides robust SNP-heritability
estimation, an alternative to marker discovery, and accurate genomic prediction,
taking 22 seconds per iteration to estimate 8.4 million SNP-effects and 78 SNP-heritability
parameters in the UK Biobank. We find that only $\leq$ 10\% of the genetic variation
captured for height, body mass index, cardiovascular disease, and type 2 diabetes
is attributable to proximal regulatory regions within 10kb upstream of genes,
while 12-25% is attributed to coding regions, 32-44% to introns, and 22-28% to
distal 10-500kb upstream regions. Up to 24% of all cis and coding regions of each
chromosome are associated with each trait, with over 3,100 independent exonic
and intronic regions and over 5,400 independent regulatory regions having >95%
probability of contributing >0.001% to the genetic variance of these four traits.
Our open-source software (GMRM) provides a scalable alternative to current approaches
for biobank data.
article_processing_charge: No
author:
- first_name: Matthew Richard
full_name: Robinson, Matthew Richard
id: E5D42276-F5DA-11E9-8E24-6303E6697425
last_name: Robinson
orcid: 0000-0001-8982-8813
citation:
ama: Robinson MR. Probabilistic inference of the genetic architecture of functional
enrichment of complex traits. 2021. doi:10.5061/dryad.sqv9s4n51
apa: Robinson, M. R. (2021). Probabilistic inference of the genetic architecture
of functional enrichment of complex traits. Dryad. https://doi.org/10.5061/dryad.sqv9s4n51
chicago: Robinson, Matthew Richard. “Probabilistic Inference of the Genetic Architecture
of Functional Enrichment of Complex Traits.” Dryad, 2021. https://doi.org/10.5061/dryad.sqv9s4n51.
ieee: M. R. Robinson, “Probabilistic inference of the genetic architecture of functional
enrichment of complex traits.” Dryad, 2021.
ista: Robinson MR. 2021. Probabilistic inference of the genetic architecture of
functional enrichment of complex traits, Dryad, 10.5061/dryad.sqv9s4n51.
mla: Robinson, Matthew Richard. Probabilistic Inference of the Genetic Architecture
of Functional Enrichment of Complex Traits. Dryad, 2021, doi:10.5061/dryad.sqv9s4n51.
short: M.R. Robinson, (2021).
date_created: 2023-05-23T16:20:16Z
date_published: 2021-11-04T00:00:00Z
date_updated: 2023-09-26T10:36:15Z
day: '04'
ddc:
- '570'
department:
- _id: MaRo
doi: 10.5061/dryad.sqv9s4n51
main_file_link:
- open_access: '1'
url: https://doi.org/10.5061/dryad.sqv9s4n51
month: '11'
oa: 1
oa_version: Published Version
publisher: Dryad
related_material:
link:
- relation: software
url: https://github.com/medical-genomics-group/gmrm
record:
- id: '8429'
relation: used_in_publication
status: public
status: public
title: Probabilistic inference of the genetic architecture of functional enrichment
of complex traits
tmp:
image: /images/cc_0.png
legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode
name: Creative Commons Public Domain Dedication (CC0 1.0)
short: CC0 (1.0)
type: research_data_reference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '9304'
abstract:
- lang: eng
text: The high processing cost, poor mechanical properties and moderate performance
of Bi2Te3–based alloys used in thermoelectric devices limit the cost-effectiveness
of this energy conversion technology. Towards solving these current challenges,
in the present work, we detail a low temperature solution-based approach to produce
Bi2Te3-Cu2-xTe nanocomposites with improved thermoelectric performance. Our approach
consists in combining proper ratios of colloidal nanoparticles and to consolidate
the resulting mixture into nanocomposites using a hot press. The transport properties
of the nanocomposites are characterized and compared with those of pure Bi2Te3
nanomaterials obtained following the same procedure. In contrast with most previous
works, the presence of Cu2-xTe nanodomains does not result in a significant reduction
of the lattice thermal conductivity of the reference Bi2Te3 nanomaterial, which
is already very low. However, the introduction of Cu2-xTe yields a nearly threefold
increase of the power factor associated to a simultaneous increase of the Seebeck
coefficient and electrical conductivity at temperatures above 400 K. Taking into
account the band alignment of the two materials, we rationalize this increase
by considering that Cu2-xTe nanostructures, with a relatively low electron affinity,
are able to inject electrons into Bi2Te3, enhancing in this way its electrical
conductivity. The simultaneous increase of the Seebeck coefficient is related
to the energy filtering of charge carriers at energy barriers within Bi2Te3 domains
associated with the accumulation of electrons in regions nearby a Cu2-xTe/Bi2Te3
heterojunction. Overall, with the incorporation of a proper amount of Cu2-xTe
nanoparticles, we demonstrate a 250% improvement of the thermoelectric figure
of merit of Bi2Te3.
acknowledgement: "This work was supported by the European Regional Development Funds
and by the Generalitat de Catalunya through the project 2017SGR1246. Y.Z, C.X, M.L,
K.X and X.H thank the China Scholarship Council for the scholarship support. MI
acknowledges financial support from IST Austria. YL acknowledges funding from the
European Union’s Horizon 2020 research and innovation program under the Marie Sklodowska-Curie
grant agreement No. 754411. ICN2\r\nacknowledges funding from Generalitat de Catalunya
2017 SGR 327 and the Spanish MINECO project ENE2017-85087-C3. ICN2 is supported
by the Severo Ochoa program from the Spanish MINECO (grant no. SEV-2017-0706) and
is funded by the CERCA Program/Generalitat de Catalunya. Part of the present work
has been performed in the framework of Universitat Autònoma de Barcelona Materials
Science PhD program."
article_number: '129374'
article_processing_charge: No
article_type: original
author:
- first_name: Yu
full_name: Zhang, Yu
last_name: Zhang
- first_name: Congcong
full_name: Xing, Congcong
last_name: Xing
- first_name: Yu
full_name: Liu, Yu
id: 2A70014E-F248-11E8-B48F-1D18A9856A87
last_name: Liu
orcid: 0000-0001-7313-6740
- first_name: Mengyao
full_name: Li, Mengyao
last_name: Li
- first_name: Ke
full_name: Xiao, Ke
last_name: Xiao
- first_name: Pablo
full_name: Guardia, Pablo
last_name: Guardia
- first_name: Seungho
full_name: Lee, Seungho
id: BB243B88-D767-11E9-B658-BC13E6697425
last_name: Lee
orcid: 0000-0002-6962-8598
- first_name: Xu
full_name: Han, Xu
last_name: Han
- first_name: Ahmad
full_name: Moghaddam, Ahmad
last_name: Moghaddam
- first_name: Joan J
full_name: Roa, Joan J
last_name: Roa
- first_name: Jordi
full_name: Arbiol, Jordi
last_name: Arbiol
- first_name: Maria
full_name: Ibáñez, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibáñez
orcid: 0000-0001-5013-2843
- first_name: Kai
full_name: Pan, Kai
last_name: Pan
- first_name: Mirko
full_name: Prato, Mirko
last_name: Prato
- first_name: Ying
full_name: Xie, Ying
last_name: Xie
- first_name: Andreu
full_name: Cabot, Andreu
last_name: Cabot
citation:
ama: Zhang Y, Xing C, Liu Y, et al. Influence of copper telluride nanodomains on
the transport properties of n-type bismuth telluride. Chemical Engineering
Journal. 2021;418(8). doi:10.1016/j.cej.2021.129374
apa: Zhang, Y., Xing, C., Liu, Y., Li, M., Xiao, K., Guardia, P., … Cabot, A. (2021).
Influence of copper telluride nanodomains on the transport properties of n-type
bismuth telluride. Chemical Engineering Journal. Elsevier. https://doi.org/10.1016/j.cej.2021.129374
chicago: Zhang, Yu, Congcong Xing, Yu Liu, Mengyao Li, Ke Xiao, Pablo Guardia, Seungho
Lee, et al. “Influence of Copper Telluride Nanodomains on the Transport Properties
of N-Type Bismuth Telluride.” Chemical Engineering Journal. Elsevier, 2021.
https://doi.org/10.1016/j.cej.2021.129374.
ieee: Y. Zhang et al., “Influence of copper telluride nanodomains on the
transport properties of n-type bismuth telluride,” Chemical Engineering Journal,
vol. 418, no. 8. Elsevier, 2021.
ista: Zhang Y, Xing C, Liu Y, Li M, Xiao K, Guardia P, Lee S, Han X, Moghaddam A,
Roa JJ, Arbiol J, Ibáñez M, Pan K, Prato M, Xie Y, Cabot A. 2021. Influence of
copper telluride nanodomains on the transport properties of n-type bismuth telluride.
Chemical Engineering Journal. 418(8), 129374.
mla: Zhang, Yu, et al. “Influence of Copper Telluride Nanodomains on the Transport
Properties of N-Type Bismuth Telluride.” Chemical Engineering Journal,
vol. 418, no. 8, 129374, Elsevier, 2021, doi:10.1016/j.cej.2021.129374.
short: Y. Zhang, C. Xing, Y. Liu, M. Li, K. Xiao, P. Guardia, S. Lee, X. Han, A.
Moghaddam, J.J. Roa, J. Arbiol, M. Ibáñez, K. Pan, M. Prato, Y. Xie, A. Cabot,
Chemical Engineering Journal 418 (2021).
date_created: 2021-04-04T22:01:20Z
date_published: 2021-08-15T00:00:00Z
date_updated: 2023-09-27T07:36:29Z
day: '15'
department:
- _id: MaIb
doi: 10.1016/j.cej.2021.129374
ec_funded: 1
external_id:
isi:
- '000655672000005'
intvolume: ' 418'
isi: 1
issue: '8'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://ddd.uab.cat/record/271949
month: '08'
oa: 1
oa_version: Submitted Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Chemical Engineering Journal
publication_identifier:
issn:
- 1385-8947
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Influence of copper telluride nanodomains on the transport properties of n-type
bismuth telluride
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 418
year: '2021'
...
---
_id: '9793'
abstract:
- lang: eng
text: Astrocytes extensively infiltrate the neuropil to regulate critical aspects
of synaptic development and function. This process is regulated by transcellular
interactions between astrocytes and neurons via cell adhesion molecules. How astrocytes
coordinate developmental processes among one another to parse out the synaptic
neuropil and form non-overlapping territories is unknown. Here we identify a molecular
mechanism regulating astrocyte-astrocyte interactions during development to coordinate
astrocyte morphogenesis and gap junction coupling. We show that hepaCAM, a disease-linked,
astrocyte-enriched cell adhesion molecule, regulates astrocyte competition for
territory and morphological complexity in the developing mouse cortex. Furthermore,
conditional deletion of Hepacam from developing astrocytes significantly impairs
gap junction coupling between astrocytes and disrupts the balance between synaptic
excitation and inhibition. Mutations in HEPACAM cause megalencephalic leukoencephalopathy
with subcortical cysts in humans. Therefore, our findings suggest that disruption
of astrocyte self-organization mechanisms could be an underlying cause of neural
pathology.
acknowledgement: This work was supported by the National Institutes of Health (R01
DA047258 and R01 NS102237 to C.E., F32 NS100392 to K.T.B.) and the Holland-Trice
Brain Research Award (to C.E.). K.T.B. was supported by postdoctoral fellowships
from the Foerster-Bernstein Family and The Hartwell Foundation. The Hippenmeyer
lab was supported by the European Research Council (ERC) under the European Union’s
Horizon 2020 research and innovations program (725780 LinPro) to S.H. R.E. was supported
by Ministerio de Ciencia y Tecnología (RTI2018-093493-B-I00). We thank the Duke
Light Microscopy Core Facility, the Duke Transgenic Mouse Facility, Dr. U. Schulte
for assistance with proteomic experiments, and Dr. D. Silver for critical review
of the manuscript. Cartoon elements of figure panels were created using BioRender.com.
article_processing_charge: No
article_type: original
author:
- first_name: Katherine T.
full_name: Baldwin, Katherine T.
last_name: Baldwin
- first_name: Christabel X.
full_name: Tan, Christabel X.
last_name: Tan
- first_name: Samuel T.
full_name: Strader, Samuel T.
last_name: Strader
- first_name: Changyu
full_name: Jiang, Changyu
last_name: Jiang
- first_name: Justin T.
full_name: Savage, Justin T.
last_name: Savage
- first_name: Xabier
full_name: Elorza-Vidal, Xabier
last_name: Elorza-Vidal
- first_name: Ximena
full_name: Contreras, Ximena
id: 475990FE-F248-11E8-B48F-1D18A9856A87
last_name: Contreras
- first_name: Thomas
full_name: Rülicke, Thomas
last_name: Rülicke
- first_name: Simon
full_name: Hippenmeyer, Simon
id: 37B36620-F248-11E8-B48F-1D18A9856A87
last_name: Hippenmeyer
orcid: 0000-0003-2279-1061
- first_name: Raúl
full_name: Estévez, Raúl
last_name: Estévez
- first_name: Ru-Rong
full_name: Ji, Ru-Rong
last_name: Ji
- first_name: Cagla
full_name: Eroglu, Cagla
last_name: Eroglu
citation:
ama: Baldwin KT, Tan CX, Strader ST, et al. HepaCAM controls astrocyte self-organization
and coupling. Neuron. 2021;109(15):2427-2442.e10. doi:10.1016/j.neuron.2021.05.025
apa: Baldwin, K. T., Tan, C. X., Strader, S. T., Jiang, C., Savage, J. T., Elorza-Vidal,
X., … Eroglu, C. (2021). HepaCAM controls astrocyte self-organization and coupling.
Neuron. Elsevier. https://doi.org/10.1016/j.neuron.2021.05.025
chicago: Baldwin, Katherine T., Christabel X. Tan, Samuel T. Strader, Changyu Jiang,
Justin T. Savage, Xabier Elorza-Vidal, Ximena Contreras, et al. “HepaCAM Controls
Astrocyte Self-Organization and Coupling.” Neuron. Elsevier, 2021. https://doi.org/10.1016/j.neuron.2021.05.025.
ieee: K. T. Baldwin et al., “HepaCAM controls astrocyte self-organization
and coupling,” Neuron, vol. 109, no. 15. Elsevier, p. 2427–2442.e10, 2021.
ista: Baldwin KT, Tan CX, Strader ST, Jiang C, Savage JT, Elorza-Vidal X, Contreras
X, Rülicke T, Hippenmeyer S, Estévez R, Ji R-R, Eroglu C. 2021. HepaCAM controls
astrocyte self-organization and coupling. Neuron. 109(15), 2427–2442.e10.
mla: Baldwin, Katherine T., et al. “HepaCAM Controls Astrocyte Self-Organization
and Coupling.” Neuron, vol. 109, no. 15, Elsevier, 2021, p. 2427–2442.e10,
doi:10.1016/j.neuron.2021.05.025.
short: K.T. Baldwin, C.X. Tan, S.T. Strader, C. Jiang, J.T. Savage, X. Elorza-Vidal,
X. Contreras, T. Rülicke, S. Hippenmeyer, R. Estévez, R.-R. Ji, C. Eroglu, Neuron
109 (2021) 2427–2442.e10.
date_created: 2021-08-06T09:08:25Z
date_published: 2021-08-04T00:00:00Z
date_updated: 2023-09-27T07:46:09Z
day: '04'
department:
- _id: SiHi
doi: 10.1016/j.neuron.2021.05.025
ec_funded: 1
external_id:
isi:
- '000692851900010'
pmid:
- '34171291'
intvolume: ' 109'
isi: 1
issue: '15'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1016/j.neuron.2021.05.025
month: '08'
oa: 1
oa_version: Published Version
page: 2427-2442.e10
pmid: 1
project:
- _id: 260018B0-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '725780'
name: Principles of Neural Stem Cell Lineage Progression in Cerebral Cortex Development
publication: Neuron
publication_identifier:
eissn:
- 1097-4199
issn:
- 0896-6273
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: HepaCAM controls astrocyte self-organization and coupling
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 109
year: '2021'
...
---
_id: '9305'
abstract:
- lang: eng
text: Copper chalcogenides are outstanding thermoelectric materials for applications
in the medium-high temperature range. Among different chalcogenides, while Cu2−xSe
is characterized by higher thermoelectric figures of merit, Cu2−xS provides advantages
in terms of low cost and element abundance. In the present work, we investigate
the effect of different dopants to enhance the Cu2−xS performance and also its
thermal stability. Among the tested options, Pb-doped Cu2−xS shows the highest
improvement in stability against sulfur volatilization. Additionally, Pb incorporation
allows tuning charge carrier concentration, which enables a significant improvement
of the power factor. We demonstrate here that the introduction of an optimal additive
amount of just 0.3% results in a threefold increase of the power factor in the
middle-temperature range (500–800 K) and a record dimensionless thermoelectric
figure of merit above 2 at 880 K.
acknowledgement: This work was supported by the European Regional Development Fund
and by the Spanish Ministerio de Economía y Competitividad through the project SEHTOP
(ENE2016-77798-C4-3-R). MI acknowledges financial support from IST Austria. YL acknowledges
funding from the European Union’s Horizon 2020 research and innovation program under
the Marie Sklodowska-Curie grant agreement No. 754411. YZ, CX, XW, KX and TZ thank
the China Scholarship Council for the scholarship support. ICN2 acknowledges funding
from Generalitat de Catalunya 2017 SGR 327 and the Spanish MINECO project ENE2017-85087-C3.
ICN2 is supported by the Severo Ochoa program from the Spanish MINECO (grant no.
SEV-2017-0706) and is funded by the CERCA program/Generalitat de Catalunya. Part
of the present work has been performed in the framework of Universitat Autònoma
de Barcelona Materials Science Ph.D. program. M.C.S. has received funding from the
European Union’s Horizon 2020 research and innovation programme under the Marie
Skłodowska-Curie grant agreement No. 754510 (PROBIST) and the Severo Ochoa programme.
P.G. acknowledges financial support from the Spanish government (MICIU) through
the RTI2018-102006-J-I00 project and the Catalan Agency of Competitiveness (ACCIO)
through the TecnioSpring+ Marie Sklodowska-Curie action TECSPR16-1-0082. YZ and
CX contributed equally to this work.
article_number: '105991'
article_processing_charge: No
article_type: original
author:
- first_name: Yu
full_name: Zhang, Yu
last_name: Zhang
- first_name: Congcong
full_name: Xing, Congcong
last_name: Xing
- first_name: Yu
full_name: Liu, Yu
id: 2A70014E-F248-11E8-B48F-1D18A9856A87
last_name: Liu
orcid: 0000-0001-7313-6740
- first_name: Maria Chiara
full_name: Spadaro, Maria Chiara
last_name: Spadaro
- first_name: Xiang
full_name: Wang, Xiang
last_name: Wang
- first_name: Mengyao
full_name: Li, Mengyao
last_name: Li
- first_name: Ke
full_name: Xiao, Ke
last_name: Xiao
- first_name: Ting
full_name: Zhang, Ting
last_name: Zhang
- first_name: Pablo
full_name: Guardia, Pablo
last_name: Guardia
- first_name: Khak Ho
full_name: Lim, Khak Ho
last_name: Lim
- first_name: Ahmad Ostovari
full_name: Moghaddam, Ahmad Ostovari
last_name: Moghaddam
- first_name: Jordi
full_name: Llorca, Jordi
last_name: Llorca
- first_name: Jordi
full_name: Arbiol, Jordi
last_name: Arbiol
- first_name: Maria
full_name: Ibáñez, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibáñez
orcid: 0000-0001-5013-2843
- first_name: Andreu
full_name: Cabot, Andreu
last_name: Cabot
citation:
ama: Zhang Y, Xing C, Liu Y, et al. Doping-mediated stabilization of copper vacancies
to promote thermoelectric properties of Cu2-xS. Nano Energy. 2021;85(7).
doi:10.1016/j.nanoen.2021.105991
apa: Zhang, Y., Xing, C., Liu, Y., Spadaro, M. C., Wang, X., Li, M., … Cabot, A.
(2021). Doping-mediated stabilization of copper vacancies to promote thermoelectric
properties of Cu2-xS. Nano Energy. Elsevier. https://doi.org/10.1016/j.nanoen.2021.105991
chicago: Zhang, Yu, Congcong Xing, Yu Liu, Maria Chiara Spadaro, Xiang Wang, Mengyao
Li, Ke Xiao, et al. “Doping-Mediated Stabilization of Copper Vacancies to Promote
Thermoelectric Properties of Cu2-XS.” Nano Energy. Elsevier, 2021. https://doi.org/10.1016/j.nanoen.2021.105991.
ieee: Y. Zhang et al., “Doping-mediated stabilization of copper vacancies
to promote thermoelectric properties of Cu2-xS,” Nano Energy, vol. 85,
no. 7. Elsevier, 2021.
ista: Zhang Y, Xing C, Liu Y, Spadaro MC, Wang X, Li M, Xiao K, Zhang T, Guardia
P, Lim KH, Moghaddam AO, Llorca J, Arbiol J, Ibáñez M, Cabot A. 2021. Doping-mediated
stabilization of copper vacancies to promote thermoelectric properties of Cu2-xS.
Nano Energy. 85(7), 105991.
mla: Zhang, Yu, et al. “Doping-Mediated Stabilization of Copper Vacancies to Promote
Thermoelectric Properties of Cu2-XS.” Nano Energy, vol. 85, no. 7, 105991,
Elsevier, 2021, doi:10.1016/j.nanoen.2021.105991.
short: Y. Zhang, C. Xing, Y. Liu, M.C. Spadaro, X. Wang, M. Li, K. Xiao, T. Zhang,
P. Guardia, K.H. Lim, A.O. Moghaddam, J. Llorca, J. Arbiol, M. Ibáñez, A. Cabot,
Nano Energy 85 (2021).
date_created: 2021-04-04T22:01:21Z
date_published: 2021-07-01T00:00:00Z
date_updated: 2023-09-27T07:41:00Z
day: '01'
department:
- _id: MaIb
doi: 10.1016/j.nanoen.2021.105991
ec_funded: 1
external_id:
isi:
- '000663442200004'
intvolume: ' 85'
isi: 1
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://ddd.uab.cat/record/271947
month: '07'
oa: 1
oa_version: Submitted Version
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: Nano Energy
publication_identifier:
issn:
- 2211-2855
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Doping-mediated stabilization of copper vacancies to promote thermoelectric
properties of Cu2-xS
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 85
year: '2021'
...
---
_id: '9212'
abstract:
- lang: eng
text: Plant fitness is largely dependent on the root, the underground organ, which,
besides its anchoring function, supplies the plant body with water and all nutrients
necessary for growth and development. To exploit the soil effectively, roots must
constantly integrate environmental signals and react through adjustment of growth
and development. Important components of the root management strategy involve
a rapid modulation of the root growth kinetics and growth direction, as well as
an increase of the root system radius through formation of lateral roots (LRs).
At the molecular level, such a fascinating growth and developmental flexibility
of root organ requires regulatory networks that guarantee stability of the developmental
program but also allows integration of various environmental inputs. The plant
hormone auxin is one of the principal endogenous regulators of root system architecture
by controlling primary root growth and formation of LR. In this review, we discuss
recent progress in understanding molecular networks where auxin is one of the
main players shaping the root system and acting as mediator between endogenous
cues and environmental factors.
acknowledgement: We apologize to all the authors whose scientific work could not be
cited and discussed because of space restrictions. We thank Dr. Inge Verstraeten
(ISTAustria) and Dr. Juan Carlos Montesinos-Lopez (ETH Zürich) for helpful suggestions.
This work was supported by the DOC Fellowship Programme of the Austrian Academy
of Sciences (25008) to C.A.
article_number: a039941
article_processing_charge: No
article_type: original
author:
- first_name: Nicola
full_name: Cavallari, Nicola
id: 457160E6-F248-11E8-B48F-1D18A9856A87
last_name: Cavallari
- first_name: Christina
full_name: Artner, Christina
id: 45DF286A-F248-11E8-B48F-1D18A9856A87
last_name: Artner
- first_name: Eva
full_name: Benková, Eva
id: 38F4F166-F248-11E8-B48F-1D18A9856A87
last_name: Benková
orcid: 0000-0002-8510-9739
citation:
ama: Cavallari N, Artner C, Benková E. Auxin-regulated lateral root organogenesis.
Cold Spring Harbor Perspectives in Biology. 2021;13(7). doi:10.1101/cshperspect.a039941
apa: Cavallari, N., Artner, C., & Benková, E. (2021). Auxin-regulated lateral
root organogenesis. Cold Spring Harbor Perspectives in Biology. Cold Spring
Harbor Laboratory Press. https://doi.org/10.1101/cshperspect.a039941
chicago: Cavallari, Nicola, Christina Artner, and Eva Benková. “Auxin-Regulated
Lateral Root Organogenesis.” Cold Spring Harbor Perspectives in Biology.
Cold Spring Harbor Laboratory Press, 2021. https://doi.org/10.1101/cshperspect.a039941.
ieee: N. Cavallari, C. Artner, and E. Benková, “Auxin-regulated lateral root organogenesis,”
Cold Spring Harbor Perspectives in Biology, vol. 13, no. 7. Cold Spring
Harbor Laboratory Press, 2021.
ista: Cavallari N, Artner C, Benková E. 2021. Auxin-regulated lateral root organogenesis.
Cold Spring Harbor Perspectives in Biology. 13(7), a039941.
mla: Cavallari, Nicola, et al. “Auxin-Regulated Lateral Root Organogenesis.” Cold
Spring Harbor Perspectives in Biology, vol. 13, no. 7, a039941, Cold Spring
Harbor Laboratory Press, 2021, doi:10.1101/cshperspect.a039941.
short: N. Cavallari, C. Artner, E. Benková, Cold Spring Harbor Perspectives in Biology
13 (2021).
date_created: 2021-03-01T10:08:32Z
date_published: 2021-07-01T00:00:00Z
date_updated: 2023-09-27T06:44:06Z
day: '01'
department:
- _id: EvBe
doi: 10.1101/cshperspect.a039941
external_id:
isi:
- '000692069100001'
pmid:
- '33558367'
intvolume: ' 13'
isi: 1
issue: '7'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1101/cshperspect.a039941
month: '07'
oa: 1
oa_version: Published Version
pmid: 1
project:
- _id: 2685A872-B435-11E9-9278-68D0E5697425
name: Hormonal regulation of plant adaptive responses to environmental signals
publication: Cold Spring Harbor Perspectives in Biology
publication_identifier:
issn:
- 1943-0264
publication_status: published
publisher: Cold Spring Harbor Laboratory Press
quality_controlled: '1'
scopus_import: '1'
status: public
title: Auxin-regulated lateral root organogenesis
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2021'
...
---
_id: '9953'
abstract:
- lang: eng
text: Chronic psychological stress is one of the most important triggers and environmental
risk factors for neuropsychiatric disorders. Chronic stress can influence all
organs via the secretion of stress hormones, including glucocorticoids by the
adrenal glands, which coordinate the stress response across the body. In the brain,
glucocorticoid receptors (GR) are expressed by various cell types including microglia,
which are its resident immune cells regulating stress-induced inflammatory processes.
To study the roles of microglial GR under normal homeostatic conditions and following
chronic stress, we generated a mouse model in which the GR gene is depleted in
microglia specifically at adulthood to prevent developmental confounds. We first
confirmed that microglia were depleted in GR in our model in males and females
among the cingulate cortex and the hippocampus, both stress-sensitive brain regions.
Then, cohorts of microglial-GR depleted and wild-type (WT) adult female mice were
housed for 3 weeks in a standard or stressful condition, using a chronic unpredictable
mild stress (CUMS) paradigm. CUMS induced stress-related behavior in both microglial-GR
depleted and WT animals as demonstrated by a decrease of both saccharine preference
and progressive ratio breakpoint. Nevertheless, the hippocampal microglial and
neural mechanisms underlying the adaptation to stress occurred differently between
the two genotypes. Upon CUMS exposure, microglial morphology was altered in the
WT controls, without any apparent effect in microglial-GR depleted mice. Furthermore,
in the standard environment condition, GR depleted-microglia showed increased
expression of pro-inflammatory genes, and genes involved in microglial homeostatic
functions (such as Trem2, Cx3cr1 and Mertk). On the contrary, in CUMS condition,
GR depleted-microglia showed reduced expression levels of pro-inflammatory genes
and increased neuroprotective as well as anti-inflammatory genes compared to WT-microglia.
Moreover, in microglial-GR depleted mice, but not in WT mice, CUMS led to a significant
reduction of CA1 long-term potentiation and paired-pulse ratio. Lastly, differences
in adult hippocampal neurogenesis were observed between the genotypes during normal
homeostatic conditions, with microglial-GR deficiency increasing the formation
of newborn neurons in the dentate gyrus subgranular zone independently from stress
exposure. Together, these findings indicate that, although the deletion of microglial
GR did not prevent the animal’s ability to respond to stress, it contributed to
modulating hippocampal functions in both standard and stressful conditions, notably
by shaping the microglial response to chronic stress.
acknowledgement: We acknowledge that Université Laval stands on the traditional and
unceded land of the Huron-Wendat peoples; and that the University of Victoria exists
on the territory of the Lekwungen peoples and that the Songhees, Esquimalt and WSÁNEÆ
peoples have relationships to this land. We thank Emmanuel Planel for the access
to the epifluorescence microscope and Julie-Christine Lévesque at the Bioimaging
Platform of CRCHU de Québec-Université Laval for technical assistance. We also thank
the Centre for Advanced Materials and Related Technology for the access to the confocal
microscope with Airyscan. K.P. was supported by a doctoral scholarship from Fonds
de Recherche du Québec – Santé (FRQS), an excellence award from Fondation du CHU
de Québec, as well as from Centre Thématique de Recherche en Neurosciences and from
Fondation Famille-Choquette. K.B. was supported by excellence scholarships from
Université Laval and Fondation du CHU de Québec. S.G. is supported by FIRC-AIRC
fellowship for Italy 22329/2018 and by Pilot ARISLA NKINALS 2019. C.W.H. and J.C.S.
were supported by postdoctoral fellowships from FRQS. This study was funded by a
Natural Sciences and Engineering Research Council of Canada (NSERC) Discovery grant
(RGPIN-2014-05308) awarded to M.E.T., by ERANET neuron 2017 MicroSynDep to M.E.T.
and I.B., and by the Italian Ministry of Health, grant RF-2018-12367249 to I.B,
by PRIN 2017, AIRC 2019 and Ministero della Salute RF2018 to C.L. M.E.T. is a Tier
II Canada Research Chair in Neurobiology of Aging and Cognition.
article_processing_charge: No
article_type: original
author:
- first_name: Katherine
full_name: Picard, Katherine
last_name: Picard
- first_name: Kanchan
full_name: Bisht, Kanchan
last_name: Bisht
- first_name: Silvia
full_name: Poggini, Silvia
last_name: Poggini
- first_name: Stefano
full_name: Garofalo, Stefano
last_name: Garofalo
- first_name: Maria Teresa
full_name: Golia, Maria Teresa
last_name: Golia
- first_name: Bernadette
full_name: Basilico, Bernadette
id: 36035796-5ACA-11E9-A75E-7AF2E5697425
last_name: Basilico
orcid: 0000-0003-1843-3173
- first_name: Fatima
full_name: Abdallah, Fatima
last_name: Abdallah
- first_name: Naomi
full_name: Ciano Albanese, Naomi
last_name: Ciano Albanese
- first_name: Irmgard
full_name: Amrein, Irmgard
last_name: Amrein
- first_name: Nathalie
full_name: Vernoux, Nathalie
last_name: Vernoux
- first_name: Kaushik
full_name: Sharma, Kaushik
last_name: Sharma
- first_name: Chin Wai
full_name: Hui, Chin Wai
last_name: Hui
- first_name: Julie
full_name: C. Savage, Julie
last_name: C. Savage
- first_name: Cristina
full_name: Limatola, Cristina
last_name: Limatola
- first_name: Davide
full_name: Ragozzino, Davide
last_name: Ragozzino
- first_name: Laura
full_name: Maggi, Laura
last_name: Maggi
- first_name: Igor
full_name: Branchi, Igor
last_name: Branchi
- first_name: Marie Ève
full_name: Tremblay, Marie Ève
last_name: Tremblay
citation:
ama: Picard K, Bisht K, Poggini S, et al. Microglial-glucocorticoid receptor depletion
alters the response of hippocampal microglia and neurons in a chronic unpredictable
mild stress paradigm in female mice. Brain, Behavior, and Immunity. 2021;97:423-439.
doi:10.1016/j.bbi.2021.07.022
apa: Picard, K., Bisht, K., Poggini, S., Garofalo, S., Golia, M. T., Basilico, B.,
… Tremblay, M. È. (2021). Microglial-glucocorticoid receptor depletion alters
the response of hippocampal microglia and neurons in a chronic unpredictable mild
stress paradigm in female mice. Brain, Behavior, and Immunity. Elsevier.
https://doi.org/10.1016/j.bbi.2021.07.022
chicago: Picard, Katherine, Kanchan Bisht, Silvia Poggini, Stefano Garofalo, Maria
Teresa Golia, Bernadette Basilico, Fatima Abdallah, et al. “Microglial-Glucocorticoid
Receptor Depletion Alters the Response of Hippocampal Microglia and Neurons in
a Chronic Unpredictable Mild Stress Paradigm in Female Mice.” Brain, Behavior,
and Immunity. Elsevier, 2021. https://doi.org/10.1016/j.bbi.2021.07.022.
ieee: K. Picard et al., “Microglial-glucocorticoid receptor depletion alters
the response of hippocampal microglia and neurons in a chronic unpredictable mild
stress paradigm in female mice,” Brain, Behavior, and Immunity, vol. 97.
Elsevier, pp. 423–439, 2021.
ista: Picard K, Bisht K, Poggini S, Garofalo S, Golia MT, Basilico B, Abdallah F,
Ciano Albanese N, Amrein I, Vernoux N, Sharma K, Hui CW, C. Savage J, Limatola
C, Ragozzino D, Maggi L, Branchi I, Tremblay MÈ. 2021. Microglial-glucocorticoid
receptor depletion alters the response of hippocampal microglia and neurons in
a chronic unpredictable mild stress paradigm in female mice. Brain, Behavior,
and Immunity. 97, 423–439.
mla: Picard, Katherine, et al. “Microglial-Glucocorticoid Receptor Depletion Alters
the Response of Hippocampal Microglia and Neurons in a Chronic Unpredictable Mild
Stress Paradigm in Female Mice.” Brain, Behavior, and Immunity, vol. 97,
Elsevier, 2021, pp. 423–39, doi:10.1016/j.bbi.2021.07.022.
short: K. Picard, K. Bisht, S. Poggini, S. Garofalo, M.T. Golia, B. Basilico, F.
Abdallah, N. Ciano Albanese, I. Amrein, N. Vernoux, K. Sharma, C.W. Hui, J. C.
Savage, C. Limatola, D. Ragozzino, L. Maggi, I. Branchi, M.È. Tremblay, Brain,
Behavior, and Immunity 97 (2021) 423–439.
date_created: 2021-08-22T22:01:21Z
date_published: 2021-10-01T00:00:00Z
date_updated: 2023-10-03T09:49:18Z
day: '01'
department:
- _id: GaNo
doi: 10.1016/j.bbi.2021.07.022
external_id:
isi:
- '000702878400007'
pmid:
- '34343616'
intvolume: ' 97'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://www.zora.uzh.ch/id/eprint/208855/1/ZORA208855.pdf
month: '10'
oa: 1
oa_version: Submitted Version
page: 423-439
pmid: 1
publication: Brain, Behavior, and Immunity
publication_identifier:
issn:
- 0889-1591
publication_status: published
publisher: Elsevier
quality_controlled: '1'
scopus_import: '1'
status: public
title: Microglial-glucocorticoid receptor depletion alters the response of hippocampal
microglia and neurons in a chronic unpredictable mild stress paradigm in female
mice
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 97
year: '2021'
...
---
_id: '10327'
abstract:
- lang: eng
text: Composite materials offer numerous advantages in a wide range of applications,
including thermoelectrics. Here, semiconductor–metal composites are produced by
just blending nanoparticles of a sulfide semiconductor obtained in aqueous solution
and at room temperature with a metallic Cu powder. The obtained blend is annealed
in a reducing atmosphere and afterward consolidated into dense polycrystalline
pellets through spark plasma sintering (SPS). We observe that, during the annealing
process, the presence of metallic copper activates a partial reduction of the
PbS, resulting in the formation of PbS–Pb–CuxS composites. The presence of metallic
lead during the SPS process habilitates the liquid-phase sintering of the composite.
Besides, by comparing the transport properties of PbS, the PbS–Pb–CuxS composites,
and PbS–CuxS composites obtained by blending PbS and CuxS nanoparticles, we demonstrate
that the presence of metallic lead decisively contributes to a strong increase
of the charge carrier concentration through spillover of charge carriers enabled
by the low work function of lead. The increase in charge carrier concentration
translates into much higher electrical conductivities and moderately lower Seebeck
coefficients. These properties translate into power factors up to 2.1 mW m–1 K–2
at ambient temperature, well above those of PbS and PbS + CuxS. Additionally,
the presence of multiple phases in the final composite results in a notable decrease
in the lattice thermal conductivity. Overall, the introduction of metallic copper
in the initial blend results in a significant improvement of the thermoelectric
performance of PbS, reaching a dimensionless thermoelectric figure of merit ZT
= 1.1 at 750 K, which represents about a 400% increase over bare PbS. Besides,
an average ZTave = 0.72 in the temperature range 320–773 K is demonstrated.
acknowledgement: This work was supported by the European Regional Development Funds.
M.L., Y.Z., X.H., and K.X. thank the China Scholarship Council for scholarship support.
M. I. has been financially supported by IST Austria and the Werner Siemens Foundation.
Y.L. acknowledges funding from the European Union’s Horizon 2020 research and innovation
program under the Marie Sklodowska-Curie grant agreement No. 754411. J.L. is a Serra
Húnter fellow and is grateful to ICREA Academia program and projects MICINN/FEDER
RTI2018-093996-B-C31 and GC 2017 SGR 128. ICN2 acknowledges funding from Generalitat
de Catalunya 2017 SGR 327 and the Spanish MINECO project NANOGEN (PID2020-116093RB-C43).
ICN2 was supported by the Severo Ochoa program from Spanish MINECO (grant no. SEV-2017-0706)
and was funded by the CERCA Programme/Generalitat de Catalunya. X.H. thanks China
Scholarship Council for scholarship support (201804910551). Part of the present
work was performed in the framework of Universitat Autònoma de Barcelona Materials
Science Ph.D. program.
article_processing_charge: No
article_type: original
author:
- first_name: Mengyao
full_name: Li, Mengyao
last_name: Li
- first_name: Yu
full_name: Liu, Yu
id: 2A70014E-F248-11E8-B48F-1D18A9856A87
last_name: Liu
orcid: 0000-0001-7313-6740
- first_name: Yu
full_name: Zhang, Yu
last_name: Zhang
- first_name: Xu
full_name: Han, Xu
last_name: Han
- first_name: Ke
full_name: Xiao, Ke
last_name: Xiao
- first_name: Mehran
full_name: Nabahat, Mehran
last_name: Nabahat
- first_name: Jordi
full_name: Arbiol, Jordi
last_name: Arbiol
- first_name: Jordi
full_name: Llorca, Jordi
last_name: Llorca
- first_name: Maria
full_name: Ibáñez, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibáñez
orcid: 0000-0001-5013-2843
- first_name: Andreu
full_name: Cabot, Andreu
last_name: Cabot
citation:
ama: Li M, Liu Y, Zhang Y, et al. PbS–Pb–CuxS composites for thermoelectric application.
ACS Applied Materials and Interfaces. 2021;13(43):51373–51382. doi:10.1021/acsami.1c15609
apa: Li, M., Liu, Y., Zhang, Y., Han, X., Xiao, K., Nabahat, M., … Cabot, A. (2021).
PbS–Pb–CuxS composites for thermoelectric application. ACS Applied Materials
and Interfaces. American Chemical Society . https://doi.org/10.1021/acsami.1c15609
chicago: Li, Mengyao, Yu Liu, Yu Zhang, Xu Han, Ke Xiao, Mehran Nabahat, Jordi Arbiol,
Jordi Llorca, Maria Ibáñez, and Andreu Cabot. “PbS–Pb–CuxS Composites for Thermoelectric
Application.” ACS Applied Materials and Interfaces. American Chemical Society
, 2021. https://doi.org/10.1021/acsami.1c15609.
ieee: M. Li et al., “PbS–Pb–CuxS composites for thermoelectric application,”
ACS Applied Materials and Interfaces, vol. 13, no. 43. American Chemical
Society , pp. 51373–51382, 2021.
ista: Li M, Liu Y, Zhang Y, Han X, Xiao K, Nabahat M, Arbiol J, Llorca J, Ibáñez
M, Cabot A. 2021. PbS–Pb–CuxS composites for thermoelectric application. ACS Applied
Materials and Interfaces. 13(43), 51373–51382.
mla: Li, Mengyao, et al. “PbS–Pb–CuxS Composites for Thermoelectric Application.”
ACS Applied Materials and Interfaces, vol. 13, no. 43, American Chemical
Society , 2021, pp. 51373–51382, doi:10.1021/acsami.1c15609.
short: M. Li, Y. Liu, Y. Zhang, X. Han, K. Xiao, M. Nabahat, J. Arbiol, J. Llorca,
M. Ibáñez, A. Cabot, ACS Applied Materials and Interfaces 13 (2021) 51373–51382.
date_created: 2021-11-21T23:01:30Z
date_published: 2021-10-19T00:00:00Z
date_updated: 2023-10-03T09:55:33Z
day: '19'
department:
- _id: MaIb
doi: 10.1021/acsami.1c15609
ec_funded: 1
external_id:
isi:
- '000715852100070'
pmid:
- '34665616'
intvolume: ' 13'
isi: 1
issue: '43'
keyword:
- CuxS
- PbS
- energy conversion
- nanocomposite
- nanoparticle
- solution synthesis
- thermoelectric
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://upcommons.upc.edu/bitstream/2117/363528/1/Pb%20mengyao.pdf
month: '10'
oa: 1
oa_version: Submitted Version
page: 51373–51382
pmid: 1
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
- _id: 9B8F7476-BA93-11EA-9121-9846C619BF3A
name: 'HighTE: The Werner Siemens Laboratory for the High Throughput Discovery of
Semiconductors for Waste Heat Recovery'
publication: ACS Applied Materials and Interfaces
publication_identifier:
eissn:
- 1944-8252
issn:
- 1944-8244
publication_status: published
publisher: 'American Chemical Society '
quality_controlled: '1'
scopus_import: '1'
status: public
title: PbS–Pb–CuxS composites for thermoelectric application
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 13
year: '2021'
...
---
_id: '9235'
abstract:
- lang: eng
text: Cu2–xS has become one of the most promising thermoelectric materials for application
in the middle-high temperature range. Its advantages include the abundance, low
cost, and safety of its elements and a high performance at relatively elevated
temperatures. However, stability issues limit its operation current and temperature,
thus calling for the optimization of the material performance in the middle temperature
range. Here, we present a synthetic protocol for large scale production of covellite
CuS nanoparticles at ambient temperature and atmosphere, and using water as a
solvent. The crystal phase and stoichiometry of the particles are afterward tuned
through an annealing process at a moderate temperature under inert or reducing
atmosphere. While annealing under argon results in Cu1.8S nanopowder with a rhombohedral
crystal phase, annealing in an atmosphere containing hydrogen leads to tetragonal
Cu1.96S. High temperature X-ray diffraction analysis shows the material annealed
in argon to transform to the cubic phase at ca. 400 K, while the material annealed
in the presence of hydrogen undergoes two phase transitions, first to hexagonal
and then to the cubic structure. The annealing atmosphere, temperature, and time
allow adjustment of the density of copper vacancies and thus tuning of the charge
carrier concentration and material transport properties. In this direction, the
material annealed under Ar is characterized by higher electrical conductivities
but lower Seebeck coefficients than the material annealed in the presence of hydrogen.
By optimizing the charge carrier concentration through the annealing time, Cu2–xS
with record figures of merit in the middle temperature range, up to 1.41 at 710
K, is obtained. We finally demonstrate that this strategy, based on a low-cost
and scalable solution synthesis process, is also suitable for the production of
high performance Cu2–xS layers using high throughput and cost-effective printing
technologies.
acknowledgement: This work was supported by the European Regional Development Funds.
M.Y.L., X.H., T.Z., and K.X. thank the China Scholarship Council for scholarship
support. M.I. acknowledges financial support from IST Austria. J.L. acknowledges
support from the National Natural Science Foundation of China (No. 22008091), the
funding for scientific research startup of Jiangsu University (No. 19JDG044), and
Jiangsu Provincial Program for High-Level Innovative and Entrepreneurial Talents
Introduction. J.L. is a Serra Húnter fellow and is grateful to the ICREA Academia
program and projects MICINN/FEDER RTI2018-093996-B-C31 and GC 2017 SGR 128. ICN2
acknowledges funding from Generalitat de Catalunya 2017 SGR 327 and the Spanish
MINECO ENE2017-85087-C3. ICN2 is supported by the Severo Ochoa program from Spanish
MINECO (Grant No. SEV-2017-0706) and is funded by the CERCA Programme/Generalitat
de Catalunya. Part of the present work has been performed in the framework of Universitat
Autònoma de Barcelona Materials Science PhD program. T.Z. has received funding from
the CSC-UAB PhD scholarship program.
article_processing_charge: No
article_type: original
author:
- first_name: Mengyao
full_name: Li, Mengyao
last_name: Li
- first_name: Yu
full_name: Liu, Yu
id: 2A70014E-F248-11E8-B48F-1D18A9856A87
last_name: Liu
orcid: 0000-0001-7313-6740
- first_name: Yu
full_name: Zhang, Yu
last_name: Zhang
- first_name: Xu
full_name: Han, Xu
last_name: Han
- first_name: Ting
full_name: Zhang, Ting
last_name: Zhang
- first_name: Yong
full_name: Zuo, Yong
last_name: Zuo
- first_name: Chenyang
full_name: Xie, Chenyang
last_name: Xie
- first_name: Ke
full_name: Xiao, Ke
last_name: Xiao
- first_name: Jordi
full_name: Arbiol, Jordi
last_name: Arbiol
- first_name: Jordi
full_name: Llorca, Jordi
last_name: Llorca
- first_name: Maria
full_name: Ibáñez, Maria
id: 43C61214-F248-11E8-B48F-1D18A9856A87
last_name: Ibáñez
orcid: 0000-0001-5013-2843
- first_name: Junfeng
full_name: Liu, Junfeng
last_name: Liu
- first_name: Andreu
full_name: Cabot, Andreu
last_name: Cabot
citation:
ama: Li M, Liu Y, Zhang Y, et al. Effect of the annealing atmosphere on crystal
phase and thermoelectric properties of copper sulfide. ACS Nano. 2021;15(3):4967–4978.
doi:10.1021/acsnano.0c09866
apa: Li, M., Liu, Y., Zhang, Y., Han, X., Zhang, T., Zuo, Y., … Cabot, A. (2021).
Effect of the annealing atmosphere on crystal phase and thermoelectric properties
of copper sulfide. ACS Nano. American Chemical Society . https://doi.org/10.1021/acsnano.0c09866
chicago: Li, Mengyao, Yu Liu, Yu Zhang, Xu Han, Ting Zhang, Yong Zuo, Chenyang Xie,
et al. “Effect of the Annealing Atmosphere on Crystal Phase and Thermoelectric
Properties of Copper Sulfide.” ACS Nano. American Chemical Society , 2021.
https://doi.org/10.1021/acsnano.0c09866.
ieee: M. Li et al., “Effect of the annealing atmosphere on crystal phase
and thermoelectric properties of copper sulfide,” ACS Nano, vol. 15, no.
3. American Chemical Society , pp. 4967–4978, 2021.
ista: Li M, Liu Y, Zhang Y, Han X, Zhang T, Zuo Y, Xie C, Xiao K, Arbiol J, Llorca
J, Ibáñez M, Liu J, Cabot A. 2021. Effect of the annealing atmosphere on crystal
phase and thermoelectric properties of copper sulfide. ACS Nano. 15(3), 4967–4978.
mla: Li, Mengyao, et al. “Effect of the Annealing Atmosphere on Crystal Phase and
Thermoelectric Properties of Copper Sulfide.” ACS Nano, vol. 15, no. 3,
American Chemical Society , 2021, pp. 4967–4978, doi:10.1021/acsnano.0c09866.
short: M. Li, Y. Liu, Y. Zhang, X. Han, T. Zhang, Y. Zuo, C. Xie, K. Xiao, J. Arbiol,
J. Llorca, M. Ibáñez, J. Liu, A. Cabot, ACS Nano 15 (2021) 4967–4978.
date_created: 2021-03-10T20:12:45Z
date_published: 2021-03-01T00:00:00Z
date_updated: 2023-10-03T09:59:55Z
day: '01'
department:
- _id: MaIb
doi: 10.1021/acsnano.0c09866
external_id:
isi:
- '000634569100106'
pmid:
- '33645986'
intvolume: ' 15'
isi: 1
issue: '3'
keyword:
- General Engineering
- General Physics and Astronomy
- General Materials Science
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://upcommons.upc.edu/bitstream/handle/2117/363528/Pb%20mengyao.pdf?sequence=1&isAllowed=y
month: '03'
oa: 1
oa_version: Submitted Version
page: 4967–4978
pmid: 1
publication: ACS Nano
publication_identifier:
eissn:
- 1936-086X
issn:
- 1936-0851
publication_status: published
publisher: 'American Chemical Society '
quality_controlled: '1'
scopus_import: '1'
status: public
title: Effect of the annealing atmosphere on crystal phase and thermoelectric properties
of copper sulfide
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 15
year: '2021'
...
---
_id: '10204'
abstract:
- lang: eng
text: Two common representations of close packings of identical spheres consisting
of hexagonal layers, called Barlow stackings, appear abundantly in minerals and
metals. These motifs, however, occupy an identical portion of space and bear identical
first-order topological signatures as measured by persistent homology. Here we
present a novel method based on k-fold covers that unambiguously distinguishes
between these patterns. Moreover, our approach provides topological evidence that
the FCC motif is the more stable of the two in the context of evolving experimental
sphere packings during the transition from disordered to an ordered state. We
conclude that our approach can be generalised to distinguish between various Barlow
stackings manifested in minerals and metals.
acknowledgement: MS acknowledges the support by Australian Research Council funding
through the ARC Training Centre for M3D Innovation (IC180100008). MS thanks M. Hanifpour
and N. Francois for their input and valuable discussions. This project has received
funding from the European Research Council (ERC) under the European Union's Horizon
2020 research and innovation programme, grant no. 788183 and from the Wittgenstein
Prize, Austrian Science Fund (FWF), grant no. Z 342-N31.
article_processing_charge: No
article_type: original
author:
- first_name: Georg F
full_name: Osang, Georg F
id: 464B40D6-F248-11E8-B48F-1D18A9856A87
last_name: Osang
orcid: 0000-0002-8882-5116
- first_name: Herbert
full_name: Edelsbrunner, Herbert
id: 3FB178DA-F248-11E8-B48F-1D18A9856A87
last_name: Edelsbrunner
orcid: 0000-0002-9823-6833
- first_name: Mohammad
full_name: Saadatfar, Mohammad
last_name: Saadatfar
citation:
ama: Osang GF, Edelsbrunner H, Saadatfar M. Topological signatures and stability
of hexagonal close packing and Barlow stackings. Soft Matter. 2021;17(40):9107-9115.
doi:10.1039/d1sm00774b
apa: Osang, G. F., Edelsbrunner, H., & Saadatfar, M. (2021). Topological signatures
and stability of hexagonal close packing and Barlow stackings. Soft Matter.
Royal Society of Chemistry . https://doi.org/10.1039/d1sm00774b
chicago: Osang, Georg F, Herbert Edelsbrunner, and Mohammad Saadatfar. “Topological
Signatures and Stability of Hexagonal Close Packing and Barlow Stackings.” Soft
Matter. Royal Society of Chemistry , 2021. https://doi.org/10.1039/d1sm00774b.
ieee: G. F. Osang, H. Edelsbrunner, and M. Saadatfar, “Topological signatures and
stability of hexagonal close packing and Barlow stackings,” Soft Matter,
vol. 17, no. 40. Royal Society of Chemistry , pp. 9107–9115, 2021.
ista: Osang GF, Edelsbrunner H, Saadatfar M. 2021. Topological signatures and stability
of hexagonal close packing and Barlow stackings. Soft Matter. 17(40), 9107–9115.
mla: Osang, Georg F., et al. “Topological Signatures and Stability of Hexagonal
Close Packing and Barlow Stackings.” Soft Matter, vol. 17, no. 40, Royal
Society of Chemistry , 2021, pp. 9107–15, doi:10.1039/d1sm00774b.
short: G.F. Osang, H. Edelsbrunner, M. Saadatfar, Soft Matter 17 (2021) 9107–9115.
date_created: 2021-10-31T23:01:30Z
date_published: 2021-10-20T00:00:00Z
date_updated: 2023-10-03T09:24:27Z
day: '20'
ddc:
- '540'
department:
- _id: HeEd
doi: 10.1039/d1sm00774b
ec_funded: 1
external_id:
isi:
- '000700090000001'
pmid:
- '34569592'
file:
- access_level: open_access
checksum: b4da0c420530295e61b153960f6cb350
content_type: application/pdf
creator: dernst
date_created: 2023-10-03T09:21:42Z
date_updated: 2023-10-03T09:21:42Z
file_id: '14385'
file_name: 2021_SoftMatter_acceptedversion_Osang.pdf
file_size: 4678788
relation: main_file
success: 1
file_date_updated: 2023-10-03T09:21:42Z
has_accepted_license: '1'
intvolume: ' 17'
isi: 1
issue: '40'
language:
- iso: eng
month: '10'
oa: 1
oa_version: Submitted Version
page: 9107-9115
pmid: 1
project:
- _id: 266A2E9E-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '788183'
name: Alpha Shape Theory Extended
- _id: 268116B8-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: Z00342
name: The Wittgenstein Prize
publication: Soft Matter
publication_identifier:
eissn:
- 1744-6848
issn:
- 1744-683X
publication_status: published
publisher: 'Royal Society of Chemistry '
quality_controlled: '1'
scopus_import: '1'
status: public
title: Topological signatures and stability of hexagonal close packing and Barlow
stackings
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2021'
...
---
_id: '9464'
abstract:
- lang: eng
text: We firstly introduce the self-assembled growth of highly uniform Ge quantum
wires with controllable position, distance and length on patterned Si (001) substrates.
We then present the electrically tunable strong spin-orbit coupling, the first
Ge hole spin qubit and ultrafast operation of hole spin qubit in the Ge/Si quantum
wires.
acknowledgement: This work was supported by the National Key R&D Program of China
(Grant No. 2016YFA0301700) and the ERC Starting Grant no. 335497.
article_number: '9420817'
article_processing_charge: No
author:
- first_name: Fei
full_name: Gao, Fei
last_name: Gao
- first_name: Jie Yin
full_name: Zhang, Jie Yin
last_name: Zhang
- first_name: Jian Huan
full_name: Wang, Jian Huan
last_name: Wang
- first_name: Ming
full_name: Ming, Ming
last_name: Ming
- first_name: Tina
full_name: Wang, Tina
last_name: Wang
- first_name: Jian Jun
full_name: Zhang, Jian Jun
last_name: Zhang
- first_name: Hannes
full_name: Watzinger, Hannes
id: 35DF8E50-F248-11E8-B48F-1D18A9856A87
last_name: Watzinger
- first_name: Josip
full_name: Kukucka, Josip
id: 3F5D8856-F248-11E8-B48F-1D18A9856A87
last_name: Kukucka
- first_name: Lada
full_name: Vukušić, Lada
id: 31E9F056-F248-11E8-B48F-1D18A9856A87
last_name: Vukušić
orcid: 0000-0003-2424-8636
- first_name: Georgios
full_name: Katsaros, Georgios
id: 38DB5788-F248-11E8-B48F-1D18A9856A87
last_name: Katsaros
orcid: 0000-0001-8342-202X
- first_name: Ke
full_name: Wang, Ke
last_name: Wang
- first_name: Gang
full_name: Xu, Gang
last_name: Xu
- first_name: Hai Ou
full_name: Li, Hai Ou
last_name: Li
- first_name: Guo Ping
full_name: Guo, Guo Ping
last_name: Guo
citation:
ama: 'Gao F, Zhang JY, Wang JH, et al. Ge/Si quantum wires for quantum computing.
In: 2021 5th IEEE Electron Devices Technology and Manufacturing Conference,
EDTM 2021. IEEE; 2021. doi:10.1109/EDTM50988.2021.9420817'
apa: 'Gao, F., Zhang, J. Y., Wang, J. H., Ming, M., Wang, T., Zhang, J. J., … Guo,
G. P. (2021). Ge/Si quantum wires for quantum computing. In 2021 5th IEEE Electron
Devices Technology and Manufacturing Conference, EDTM 2021. Virtual, Online:
IEEE. https://doi.org/10.1109/EDTM50988.2021.9420817'
chicago: Gao, Fei, Jie Yin Zhang, Jian Huan Wang, Ming Ming, Tina Wang, Jian Jun
Zhang, Hannes Watzinger, et al. “Ge/Si Quantum Wires for Quantum Computing.” In
2021 5th IEEE Electron Devices Technology and Manufacturing Conference, EDTM
2021. IEEE, 2021. https://doi.org/10.1109/EDTM50988.2021.9420817.
ieee: F. Gao et al., “Ge/Si quantum wires for quantum computing,” in 2021
5th IEEE Electron Devices Technology and Manufacturing Conference, EDTM 2021,
Virtual, Online, 2021.
ista: 'Gao F, Zhang JY, Wang JH, Ming M, Wang T, Zhang JJ, Watzinger H, Kukucka
J, Vukušić L, Katsaros G, Wang K, Xu G, Li HO, Guo GP. 2021. Ge/Si quantum wires
for quantum computing. 2021 5th IEEE Electron Devices Technology and Manufacturing
Conference, EDTM 2021. EDTM: IEEE Electron Devices Technology and Manufacturing
Conference, 9420817.'
mla: Gao, Fei, et al. “Ge/Si Quantum Wires for Quantum Computing.” 2021 5th IEEE
Electron Devices Technology and Manufacturing Conference, EDTM 2021, 9420817,
IEEE, 2021, doi:10.1109/EDTM50988.2021.9420817.
short: F. Gao, J.Y. Zhang, J.H. Wang, M. Ming, T. Wang, J.J. Zhang, H. Watzinger,
J. Kukucka, L. Vukušić, G. Katsaros, K. Wang, G. Xu, H.O. Li, G.P. Guo, in:, 2021
5th IEEE Electron Devices Technology and Manufacturing Conference, EDTM 2021,
IEEE, 2021.
conference:
end_date: 2021-04-11
location: Virtual, Online
name: 'EDTM: IEEE Electron Devices Technology and Manufacturing Conference'
start_date: 2021-04-08
date_created: 2021-06-06T22:01:29Z
date_published: 2021-04-08T00:00:00Z
date_updated: 2023-10-03T12:51:59Z
day: '08'
department:
- _id: GeKa
doi: 10.1109/EDTM50988.2021.9420817
ec_funded: 1
external_id:
isi:
- '000675595800006'
isi: 1
language:
- iso: eng
month: '04'
oa_version: None
project:
- _id: 25517E86-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '335497'
name: Towards Spin qubits and Majorana fermions in Germanium selfassembled hut-wires
publication: 2021 5th IEEE Electron Devices Technology and Manufacturing Conference,
EDTM 2021
publication_identifier:
isbn:
- '9781728181769'
publication_status: published
publisher: IEEE
quality_controlled: '1'
scopus_import: '1'
status: public
title: Ge/Si quantum wires for quantum computing
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '9605'
abstract:
- lang: eng
text: 'Given a finite set A ⊂ ℝ^d, let Cov_{r,k} denote the set of all points within
distance r to at least k points of A. Allowing r and k to vary, we obtain a 2-parameter
family of spaces that grow larger when r increases or k decreases, called the
multicover bifiltration. Motivated by the problem of computing the homology of
this bifiltration, we introduce two closely related combinatorial bifiltrations,
one polyhedral and the other simplicial, which are both topologically equivalent
to the multicover bifiltration and far smaller than a Čech-based model considered
in prior work of Sheehy. Our polyhedral construction is a bifiltration of the
rhomboid tiling of Edelsbrunner and Osang, and can be efficiently computed using
a variant of an algorithm given by these authors as well. Using an implementation
for dimension 2 and 3, we provide experimental results. Our simplicial construction
is useful for understanding the polyhedral construction and proving its correctness. '
acknowledgement: The authors want to thank the reviewers for many helpful comments
and suggestions.
alternative_title:
- LIPIcs
article_number: '27'
article_processing_charge: No
author:
- first_name: René
full_name: Corbet, René
last_name: Corbet
- first_name: Michael
full_name: Kerber, Michael
last_name: Kerber
- first_name: Michael
full_name: Lesnick, Michael
last_name: Lesnick
- first_name: Georg F
full_name: Osang, Georg F
id: 464B40D6-F248-11E8-B48F-1D18A9856A87
last_name: Osang
orcid: 0000-0002-8882-5116
citation:
ama: 'Corbet R, Kerber M, Lesnick M, Osang GF. Computing the multicover bifiltration.
In: Leibniz International Proceedings in Informatics. Vol 189. Schloss
Dagstuhl - Leibniz-Zentrum für Informatik; 2021. doi:10.4230/LIPIcs.SoCG.2021.27'
apa: 'Corbet, R., Kerber, M., Lesnick, M., & Osang, G. F. (2021). Computing
the multicover bifiltration. In Leibniz International Proceedings in Informatics
(Vol. 189). Online: Schloss Dagstuhl - Leibniz-Zentrum für Informatik. https://doi.org/10.4230/LIPIcs.SoCG.2021.27'
chicago: Corbet, René, Michael Kerber, Michael Lesnick, and Georg F Osang. “Computing
the Multicover Bifiltration.” In Leibniz International Proceedings in Informatics,
Vol. 189. Schloss Dagstuhl - Leibniz-Zentrum für Informatik, 2021. https://doi.org/10.4230/LIPIcs.SoCG.2021.27.
ieee: R. Corbet, M. Kerber, M. Lesnick, and G. F. Osang, “Computing the multicover
bifiltration,” in Leibniz International Proceedings in Informatics, Online,
2021, vol. 189.
ista: 'Corbet R, Kerber M, Lesnick M, Osang GF. 2021. Computing the multicover bifiltration.
Leibniz International Proceedings in Informatics. SoCG: International Symposium
on Computational Geometry, LIPIcs, vol. 189, 27.'
mla: Corbet, René, et al. “Computing the Multicover Bifiltration.” Leibniz International
Proceedings in Informatics, vol. 189, 27, Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2021, doi:10.4230/LIPIcs.SoCG.2021.27.
short: R. Corbet, M. Kerber, M. Lesnick, G.F. Osang, in:, Leibniz International
Proceedings in Informatics, Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
2021.
conference:
end_date: 2021-06-11
location: Online
name: 'SoCG: International Symposium on Computational Geometry'
start_date: 2021-06-07
date_created: 2021-06-27T22:01:49Z
date_published: 2021-06-02T00:00:00Z
date_updated: 2023-10-04T12:03:39Z
day: '02'
ddc:
- '516'
department:
- _id: HeEd
doi: 10.4230/LIPIcs.SoCG.2021.27
external_id:
arxiv:
- '2103.07823'
file:
- access_level: open_access
checksum: 0de217501e7ba8b267d58deed0d51761
content_type: application/pdf
creator: cziletti
date_created: 2021-06-28T12:40:47Z
date_updated: 2021-06-28T12:40:47Z
file_id: '9610'
file_name: 2021_LIPIcs_Corbet.pdf
file_size: '1367983'
relation: main_file
success: 1
file_date_updated: 2021-06-28T12:40:47Z
has_accepted_license: '1'
intvolume: ' 189'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
publication: Leibniz International Proceedings in Informatics
publication_identifier:
isbn:
- '9783959771849'
issn:
- '18688969'
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
related_material:
link:
- relation: extended_version
url: https://arxiv.org/abs/2103.07823
record:
- id: '12709'
relation: later_version
status: public
scopus_import: '1'
status: public
title: Computing the multicover bifiltration
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 189
year: '2021'
...
---
_id: '9441'
abstract:
- lang: eng
text: "Isomanifolds are the generalization of isosurfaces to arbitrary dimension
and codimension, i.e. submanifolds of ℝ^d defined as the zero set of some multivariate
multivalued smooth function f: ℝ^d → ℝ^{d-n}, where n is the intrinsic dimension
of the manifold. A natural way to approximate a smooth isomanifold M is to consider
its Piecewise-Linear (PL) approximation M̂ based on a triangulation \U0001D4AF
of the ambient space ℝ^d. In this paper, we describe a simple algorithm to trace
isomanifolds from a given starting point. The algorithm works for arbitrary dimensions
n and d, and any precision D. Our main result is that, when f (or M) has bounded
complexity, the complexity of the algorithm is polynomial in d and δ = 1/D (and
unavoidably exponential in n). Since it is known that for δ = Ω (d^{2.5}), M̂
is O(D²)-close and isotopic to M, our algorithm produces a faithful PL-approximation
of isomanifolds of bounded complexity in time polynomial in d. Combining this
algorithm with dimensionality reduction techniques, the dependency on d in the
size of M̂ can be completely removed with high probability. We also show that
the algorithm can handle isomanifolds with boundary and, more generally, isostratifolds.
The algorithm for isomanifolds with boundary has been implemented and experimental
results are reported, showing that it is practical and can handle cases that are
far ahead of the state-of-the-art. "
acknowledgement: We thank Dominique Attali, Guilherme de Fonseca, Arijit Ghosh, Vincent
Pilaud and Aurélien Alvarez for their comments and suggestions. We also acknowledge
the reviewers.
alternative_title:
- LIPIcs
article_processing_charge: No
author:
- first_name: Jean-Daniel
full_name: Boissonnat, Jean-Daniel
last_name: Boissonnat
- first_name: Siargey
full_name: Kachanovich, Siargey
last_name: Kachanovich
- first_name: Mathijs
full_name: Wintraecken, Mathijs
id: 307CFBC8-F248-11E8-B48F-1D18A9856A87
last_name: Wintraecken
orcid: 0000-0002-7472-2220
citation:
ama: 'Boissonnat J-D, Kachanovich S, Wintraecken M. Tracing isomanifolds in Rd in
time polynomial in d using Coxeter-Freudenthal-Kuhn triangulations. In: 37th
International Symposium on Computational Geometry (SoCG 2021). Vol 189. Leibniz
International Proceedings in Informatics (LIPIcs). Dagstuhl, Germany: Schloss
Dagstuhl - Leibniz-Zentrum für Informatik; 2021:17:1-17:16. doi:10.4230/LIPIcs.SoCG.2021.17'
apa: 'Boissonnat, J.-D., Kachanovich, S., & Wintraecken, M. (2021). Tracing
isomanifolds in Rd in time polynomial in d using Coxeter-Freudenthal-Kuhn triangulations.
In 37th International Symposium on Computational Geometry (SoCG 2021) (Vol.
189, p. 17:1-17:16). Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für
Informatik. https://doi.org/10.4230/LIPIcs.SoCG.2021.17'
chicago: 'Boissonnat, Jean-Daniel, Siargey Kachanovich, and Mathijs Wintraecken.
“Tracing Isomanifolds in Rd in Time Polynomial in d Using Coxeter-Freudenthal-Kuhn
Triangulations.” In 37th International Symposium on Computational Geometry
(SoCG 2021), 189:17:1-17:16. Leibniz International Proceedings in Informatics
(LIPIcs). Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik,
2021. https://doi.org/10.4230/LIPIcs.SoCG.2021.17.'
ieee: J.-D. Boissonnat, S. Kachanovich, and M. Wintraecken, “Tracing isomanifolds
in Rd in time polynomial in d using Coxeter-Freudenthal-Kuhn triangulations,”
in 37th International Symposium on Computational Geometry (SoCG 2021),
Virtual, 2021, vol. 189, p. 17:1-17:16.
ista: 'Boissonnat J-D, Kachanovich S, Wintraecken M. 2021. Tracing isomanifolds
in Rd in time polynomial in d using Coxeter-Freudenthal-Kuhn triangulations. 37th
International Symposium on Computational Geometry (SoCG 2021). SoCG: Symposium
on Computational GeometryLeibniz International Proceedings in Informatics (LIPIcs),
LIPIcs, vol. 189, 17:1-17:16.'
mla: Boissonnat, Jean-Daniel, et al. “Tracing Isomanifolds in Rd in Time Polynomial
in d Using Coxeter-Freudenthal-Kuhn Triangulations.” 37th International Symposium
on Computational Geometry (SoCG 2021), vol. 189, Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, 2021, p. 17:1-17:16, doi:10.4230/LIPIcs.SoCG.2021.17.
short: J.-D. Boissonnat, S. Kachanovich, M. Wintraecken, in:, 37th International
Symposium on Computational Geometry (SoCG 2021), Schloss Dagstuhl - Leibniz-Zentrum
für Informatik, Dagstuhl, Germany, 2021, p. 17:1-17:16.
conference:
end_date: 2021-06-11
location: Virtual
name: 'SoCG: Symposium on Computational Geometry'
start_date: 2021-06-07
date_created: 2021-06-02T10:10:55Z
date_published: 2021-06-02T00:00:00Z
date_updated: 2023-10-10T07:34:34Z
day: '02'
ddc:
- '005'
- '516'
- '514'
department:
- _id: HeEd
doi: 10.4230/LIPIcs.SoCG.2021.17
ec_funded: 1
file:
- access_level: open_access
checksum: c322aa48d5d35a35877896cc565705b6
content_type: application/pdf
creator: mwintrae
date_created: 2021-06-02T10:22:33Z
date_updated: 2021-06-02T10:22:33Z
file_id: '9442'
file_name: LIPIcs-SoCG-2021-17.pdf
file_size: 1972902
relation: main_file
success: 1
file_date_updated: 2021-06-02T10:22:33Z
has_accepted_license: '1'
intvolume: ' 189'
language:
- iso: eng
month: '06'
oa: 1
oa_version: Published Version
page: 17:1-17:16
place: Dagstuhl, Germany
project:
- _id: 260C2330-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '754411'
name: ISTplus - Postdoctoral Fellowships
publication: 37th International Symposium on Computational Geometry (SoCG 2021)
publication_identifier:
isbn:
- 978-3-95977-184-9
issn:
- 1868-8969
publication_status: published
publisher: Schloss Dagstuhl - Leibniz-Zentrum für Informatik
quality_controlled: '1'
related_material:
record:
- id: '12960'
relation: later_version
status: public
series_title: Leibniz International Proceedings in Informatics (LIPIcs)
status: public
title: Tracing isomanifolds in Rd in time polynomial in d using Coxeter-Freudenthal-Kuhn
triangulations
tmp:
image: /images/cc_by.png
legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode
name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)
short: CC BY (4.0)
type: conference
user_id: D865714E-FA4E-11E9-B85B-F5C5E5697425
volume: 189
year: '2021'
...
---
_id: '9393'
abstract:
- lang: eng
text: "We consider the core algorithmic problems related to verification of systems
with respect to three classical quantitative properties, namely, the mean-payoff,
the ratio, and the minimum initial credit for energy property. The algorithmic
problem given a graph and a quantitative property asks to compute the optimal
value (the infimum value over all traces) from every node of the graph. We consider
graphs with bounded treewidth—a class that contains the control flow graphs of
most programs. Let n denote the number of nodes of a graph, m the number of edges
(for bounded treewidth \U0001D45A=\U0001D442(\U0001D45B)) and W the largest absolute
value of the weights. Our main theoretical results are as follows. First, for
the minimum initial credit problem we show that (1) for general graphs the problem
can be solved in \U0001D442(\U0001D45B2⋅\U0001D45A) time and the associated decision
problem in \U0001D442(\U0001D45B⋅\U0001D45A) time, improving the previous known
\U0001D442(\U0001D45B3⋅\U0001D45A⋅log(\U0001D45B⋅\U0001D44A)) and \U0001D442(\U0001D45B2⋅\U0001D45A)
bounds, respectively; and (2) for bounded treewidth graphs we present an algorithm
that requires \U0001D442(\U0001D45B⋅log\U0001D45B) time. Second, for bounded treewidth
graphs we present an algorithm that approximates the mean-payoff value within
a factor of 1+\U0001D716 in time \U0001D442(\U0001D45B⋅log(\U0001D45B/\U0001D716))
as compared to the classical exact algorithms on general graphs that require quadratic
time. Third, for the ratio property we present an algorithm that for bounded treewidth
graphs works in time \U0001D442(\U0001D45B⋅log(|\U0001D44E⋅\U0001D44F|))=\U0001D442(\U0001D45B⋅log(\U0001D45B⋅\U0001D44A)),
when the output is \U0001D44E\U0001D44F, as compared to the previously best known
algorithm on general graphs with running time \U0001D442(\U0001D45B2⋅log(\U0001D45B⋅\U0001D44A)).
We have implemented some of our algorithms and show that they present a significant
speedup on standard benchmarks."
acknowledgement: 'The research was partly supported by Austrian Science Fund (FWF)
Grant No P23499- N23, FWF NFN Grant No S11407-N23 (RiSE/SHiNE), ERC Start Grant
(279307: Graph Games), and Microsoft faculty fellows award.'
article_processing_charge: No
article_type: original
author:
- first_name: Krishnendu
full_name: Chatterjee, Krishnendu
id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87
last_name: Chatterjee
orcid: 0000-0002-4561-241X
- first_name: Rasmus
full_name: Ibsen-Jensen, Rasmus
id: 3B699956-F248-11E8-B48F-1D18A9856A87
last_name: Ibsen-Jensen
orcid: 0000-0003-4783-0389
- first_name: Andreas
full_name: Pavlogiannis, Andreas
id: 49704004-F248-11E8-B48F-1D18A9856A87
last_name: Pavlogiannis
orcid: 0000-0002-8943-0722
citation:
ama: Chatterjee K, Ibsen-Jensen R, Pavlogiannis A. Faster algorithms for quantitative
verification in bounded treewidth graphs. Formal Methods in System Design.
2021;57:401-428. doi:10.1007/s10703-021-00373-5
apa: Chatterjee, K., Ibsen-Jensen, R., & Pavlogiannis, A. (2021). Faster algorithms
for quantitative verification in bounded treewidth graphs. Formal Methods in
System Design. Springer. https://doi.org/10.1007/s10703-021-00373-5
chicago: Chatterjee, Krishnendu, Rasmus Ibsen-Jensen, and Andreas Pavlogiannis.
“Faster Algorithms for Quantitative Verification in Bounded Treewidth Graphs.”
Formal Methods in System Design. Springer, 2021. https://doi.org/10.1007/s10703-021-00373-5.
ieee: K. Chatterjee, R. Ibsen-Jensen, and A. Pavlogiannis, “Faster algorithms for
quantitative verification in bounded treewidth graphs,” Formal Methods in System
Design, vol. 57. Springer, pp. 401–428, 2021.
ista: Chatterjee K, Ibsen-Jensen R, Pavlogiannis A. 2021. Faster algorithms for
quantitative verification in bounded treewidth graphs. Formal Methods in System
Design. 57, 401–428.
mla: Chatterjee, Krishnendu, et al. “Faster Algorithms for Quantitative Verification
in Bounded Treewidth Graphs.” Formal Methods in System Design, vol. 57,
Springer, 2021, pp. 401–28, doi:10.1007/s10703-021-00373-5.
short: K. Chatterjee, R. Ibsen-Jensen, A. Pavlogiannis, Formal Methods in System
Design 57 (2021) 401–428.
date_created: 2021-05-16T22:01:47Z
date_published: 2021-09-01T00:00:00Z
date_updated: 2023-10-10T11:13:20Z
day: '01'
department:
- _id: KrCh
doi: 10.1007/s10703-021-00373-5
ec_funded: 1
external_id:
arxiv:
- '1504.07384'
isi:
- '000645490300001'
intvolume: ' 57'
isi: 1
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/1504.07384
month: '09'
oa: 1
oa_version: Preprint
page: 401-428
project:
- _id: 2584A770-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P 23499-N23
name: Modern Graph Algorithmic Techniques in Formal Verification
- _id: 25832EC2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: S 11407_N23
name: Rigorous Systems Engineering
- _id: 2581B60A-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '279307'
name: 'Quantitative Graph Games: Theory and Applications'
- _id: 2587B514-B435-11E9-9278-68D0E5697425
name: Microsoft Research Faculty Fellowship
publication: Formal Methods in System Design
publication_identifier:
eissn:
- 1572-8102
issn:
- 0925-9856
publication_status: published
publisher: Springer
quality_controlled: '1'
scopus_import: '1'
status: public
title: Faster algorithms for quantitative verification in bounded treewidth graphs
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 57
year: '2021'
...
---
_id: '9227'
abstract:
- lang: eng
text: In the multiway cut problem we are given a weighted undirected graph G=(V,E) and
a set T⊆V of k terminals. The goal is to find a minimum weight set of edges E′⊆E with
the property that by removing E′ from G all the terminals become disconnected.
In this paper we present a simple local search approximation algorithm for the
multiway cut problem with approximation ratio 2−2k . We present an experimental
evaluation of the performance of our local search algorithm and show that it greatly
outperforms the isolation heuristic of Dalhaus et al. and it has similar performance
as the much more complex algorithms of Calinescu et al., Sharma and Vondrak, and
Buchbinder et al. which have the currently best known approximation ratios for
this problem.
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Andrew
full_name: Bloch-Hansen, Andrew
last_name: Bloch-Hansen
- first_name: Nasim
full_name: Samei, Nasim
id: C1531CAE-36E9-11EA-845F-33AA3DDC885E
last_name: Samei
- first_name: Roberto
full_name: Solis-Oba, Roberto
last_name: Solis-Oba
citation:
ama: 'Bloch-Hansen A, Samei N, Solis-Oba R. Experimental evaluation of a local search
approximation algorithm for the multiway cut problem. In: Conference on Algorithms
and Discrete Applied Mathematics. Vol 12601. Springer Nature; 2021:346-358.
doi:10.1007/978-3-030-67899-9_28'
apa: 'Bloch-Hansen, A., Samei, N., & Solis-Oba, R. (2021). Experimental evaluation
of a local search approximation algorithm for the multiway cut problem. In Conference
on Algorithms and Discrete Applied Mathematics (Vol. 12601, pp. 346–358).
Rupnagar, India: Springer Nature. https://doi.org/10.1007/978-3-030-67899-9_28'
chicago: Bloch-Hansen, Andrew, Nasim Samei, and Roberto Solis-Oba. “Experimental
Evaluation of a Local Search Approximation Algorithm for the Multiway Cut Problem.”
In Conference on Algorithms and Discrete Applied Mathematics, 12601:346–58.
Springer Nature, 2021. https://doi.org/10.1007/978-3-030-67899-9_28.
ieee: A. Bloch-Hansen, N. Samei, and R. Solis-Oba, “Experimental evaluation of a
local search approximation algorithm for the multiway cut problem,” in Conference
on Algorithms and Discrete Applied Mathematics, Rupnagar, India, 2021, vol.
12601, pp. 346–358.
ista: 'Bloch-Hansen A, Samei N, Solis-Oba R. 2021. Experimental evaluation of a
local search approximation algorithm for the multiway cut problem. Conference
on Algorithms and Discrete Applied Mathematics. CALDAM: Conference on Algorithms
and Discrete Applied Mathematics, LNCS, vol. 12601, 346–358.'
mla: Bloch-Hansen, Andrew, et al. “Experimental Evaluation of a Local Search Approximation
Algorithm for the Multiway Cut Problem.” Conference on Algorithms and Discrete
Applied Mathematics, vol. 12601, Springer Nature, 2021, pp. 346–58, doi:10.1007/978-3-030-67899-9_28.
short: A. Bloch-Hansen, N. Samei, R. Solis-Oba, in:, Conference on Algorithms and
Discrete Applied Mathematics, Springer Nature, 2021, pp. 346–358.
conference:
end_date: 2021-02-13
location: Rupnagar, India
name: 'CALDAM: Conference on Algorithms and Discrete Applied Mathematics'
start_date: 2021-02-11
date_created: 2021-03-07T23:01:25Z
date_published: 2021-01-28T00:00:00Z
date_updated: 2023-10-10T09:29:08Z
day: '28'
department:
- _id: VlKo
doi: 10.1007/978-3-030-67899-9_28
intvolume: ' 12601'
language:
- iso: eng
month: '01'
oa_version: None
page: 346-358
publication: Conference on Algorithms and Discrete Applied Mathematics
publication_identifier:
eissn:
- 1611-3349
isbn:
- '9783030678982'
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: Experimental evaluation of a local search approximation algorithm for the multiway
cut problem
type: conference
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 12601
year: '2021'
...
---
_id: '8817'
abstract:
- lang: eng
text: The paper introduces an inertial extragradient subgradient method with self-adaptive
step sizes for solving equilibrium problems in real Hilbert spaces. Weak convergence
of the proposed method is obtained under the condition that the bifunction is
pseudomonotone and Lipchitz continuous. Linear convergence is also given when
the bifunction is strongly pseudomonotone and Lipchitz continuous. Numerical implementations
and comparisons with other related inertial methods are given using test problems
including a real-world application to Nash–Cournot oligopolistic electricity market
equilibrium model.
acknowledgement: The authors are grateful to the two referees and the Associate Editor
for their comments and suggestions which have improved the earlier version of the
paper greatly. The project of Yekini Shehu has received funding from the European
Research Council (ERC) under the European Union’s Seventh Framework Program (FP7
- 2007-2013) (Grant agreement No. 616160).
article_processing_charge: No
article_type: original
author:
- first_name: Yekini
full_name: Shehu, Yekini
id: 3FC7CB58-F248-11E8-B48F-1D18A9856A87
last_name: Shehu
orcid: 0000-0001-9224-7139
- first_name: Olaniyi S.
full_name: Iyiola, Olaniyi S.
last_name: Iyiola
- first_name: Duong Viet
full_name: Thong, Duong Viet
last_name: Thong
- first_name: Nguyen Thi Cam
full_name: Van, Nguyen Thi Cam
last_name: Van
citation:
ama: Shehu Y, Iyiola OS, Thong DV, Van NTC. An inertial subgradient extragradient
algorithm extended to pseudomonotone equilibrium problems. Mathematical Methods
of Operations Research. 2021;93(2):213-242. doi:10.1007/s00186-020-00730-w
apa: Shehu, Y., Iyiola, O. S., Thong, D. V., & Van, N. T. C. (2021). An inertial
subgradient extragradient algorithm extended to pseudomonotone equilibrium problems.
Mathematical Methods of Operations Research. Springer Nature. https://doi.org/10.1007/s00186-020-00730-w
chicago: Shehu, Yekini, Olaniyi S. Iyiola, Duong Viet Thong, and Nguyen Thi Cam
Van. “An Inertial Subgradient Extragradient Algorithm Extended to Pseudomonotone
Equilibrium Problems.” Mathematical Methods of Operations Research. Springer
Nature, 2021. https://doi.org/10.1007/s00186-020-00730-w.
ieee: Y. Shehu, O. S. Iyiola, D. V. Thong, and N. T. C. Van, “An inertial subgradient
extragradient algorithm extended to pseudomonotone equilibrium problems,” Mathematical
Methods of Operations Research, vol. 93, no. 2. Springer Nature, pp. 213–242,
2021.
ista: Shehu Y, Iyiola OS, Thong DV, Van NTC. 2021. An inertial subgradient extragradient
algorithm extended to pseudomonotone equilibrium problems. Mathematical Methods
of Operations Research. 93(2), 213–242.
mla: Shehu, Yekini, et al. “An Inertial Subgradient Extragradient Algorithm Extended
to Pseudomonotone Equilibrium Problems.” Mathematical Methods of Operations
Research, vol. 93, no. 2, Springer Nature, 2021, pp. 213–42, doi:10.1007/s00186-020-00730-w.
short: Y. Shehu, O.S. Iyiola, D.V. Thong, N.T.C. Van, Mathematical Methods of Operations
Research 93 (2021) 213–242.
date_created: 2020-11-29T23:01:18Z
date_published: 2021-04-01T00:00:00Z
date_updated: 2023-10-10T09:30:23Z
day: '01'
department:
- _id: VlKo
doi: 10.1007/s00186-020-00730-w
ec_funded: 1
external_id:
isi:
- '000590497300001'
intvolume: ' 93'
isi: 1
issue: '2'
language:
- iso: eng
month: '04'
oa_version: None
page: 213-242
project:
- _id: 25FBA906-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '616160'
name: 'Discrete Optimization in Computer Vision: Theory and Practice'
publication: Mathematical Methods of Operations Research
publication_identifier:
eissn:
- 1432-5217
issn:
- 1432-2994
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: An inertial subgradient extragradient algorithm extended to pseudomonotone
equilibrium problems
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 93
year: '2021'
...
---
_id: '9315'
abstract:
- lang: eng
text: We consider inertial iteration methods for Fermat–Weber location problem and
primal–dual three-operator splitting in real Hilbert spaces. To do these, we first
obtain weak convergence analysis and nonasymptotic O(1/n) convergence rate of
the inertial Krasnoselskii–Mann iteration for fixed point of nonexpansive operators
in infinite dimensional real Hilbert spaces under some seemingly easy to implement
conditions on the iterative parameters. One of our contributions is that the convergence
analysis and rate of convergence results are obtained using conditions which appear
not complicated and restrictive as assumed in other previous related results in
the literature. We then show that Fermat–Weber location problem and primal–dual
three-operator splitting are special cases of fixed point problem of nonexpansive
mapping and consequently obtain the convergence analysis of inertial iteration
methods for Fermat–Weber location problem and primal–dual three-operator splitting
in real Hilbert spaces. Some numerical implementations are drawn from primal–dual
three-operator splitting to support the theoretical analysis.
acknowledgement: The research of this author is supported by the Postdoctoral Fellowship
from Institute of Science and Technology (IST), Austria.
article_number: '75'
article_processing_charge: No
article_type: original
author:
- first_name: Olaniyi S.
full_name: Iyiola, Olaniyi S.
last_name: Iyiola
- first_name: Yekini
full_name: Shehu, Yekini
id: 3FC7CB58-F248-11E8-B48F-1D18A9856A87
last_name: Shehu
orcid: 0000-0001-9224-7139
citation:
ama: Iyiola OS, Shehu Y. New convergence results for inertial Krasnoselskii–Mann
iterations in Hilbert spaces with applications. Results in Mathematics.
2021;76(2). doi:10.1007/s00025-021-01381-x
apa: Iyiola, O. S., & Shehu, Y. (2021). New convergence results for inertial
Krasnoselskii–Mann iterations in Hilbert spaces with applications. Results
in Mathematics. Springer Nature. https://doi.org/10.1007/s00025-021-01381-x
chicago: Iyiola, Olaniyi S., and Yekini Shehu. “New Convergence Results for Inertial
Krasnoselskii–Mann Iterations in Hilbert Spaces with Applications.” Results
in Mathematics. Springer Nature, 2021. https://doi.org/10.1007/s00025-021-01381-x.
ieee: O. S. Iyiola and Y. Shehu, “New convergence results for inertial Krasnoselskii–Mann
iterations in Hilbert spaces with applications,” Results in Mathematics,
vol. 76, no. 2. Springer Nature, 2021.
ista: Iyiola OS, Shehu Y. 2021. New convergence results for inertial Krasnoselskii–Mann
iterations in Hilbert spaces with applications. Results in Mathematics. 76(2),
75.
mla: Iyiola, Olaniyi S., and Yekini Shehu. “New Convergence Results for Inertial
Krasnoselskii–Mann Iterations in Hilbert Spaces with Applications.” Results
in Mathematics, vol. 76, no. 2, 75, Springer Nature, 2021, doi:10.1007/s00025-021-01381-x.
short: O.S. Iyiola, Y. Shehu, Results in Mathematics 76 (2021).
date_created: 2021-04-11T22:01:14Z
date_published: 2021-03-25T00:00:00Z
date_updated: 2023-10-10T09:47:33Z
day: '25'
department:
- _id: VlKo
doi: 10.1007/s00025-021-01381-x
external_id:
isi:
- '000632917700001'
intvolume: ' 76'
isi: 1
issue: '2'
language:
- iso: eng
month: '03'
oa_version: None
publication: Results in Mathematics
publication_identifier:
eissn:
- 1420-9012
issn:
- 1422-6383
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
scopus_import: '1'
status: public
title: New convergence results for inertial Krasnoselskii–Mann iterations in Hilbert
spaces with applications
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 76
year: '2021'
...
---
_id: '9365'
abstract:
- lang: eng
text: In this paper, we propose a new iterative method with alternated inertial
step for solving split common null point problem in real Hilbert spaces. We obtain
weak convergence of the proposed iterative algorithm. Furthermore, we introduce
the notion of bounded linear regularity property for the split common null point
problem and obtain the linear convergence property for the new algorithm under
some mild assumptions. Finally, we provide some numerical examples to demonstrate
the performance and efficiency of the proposed method.
acknowledgement: The second author has received funding from the European Research
Council (ERC) under the European Union's Seventh Framework Program (FP7-2007-2013)
(Grant agreement No. 616160).
article_processing_charge: No
article_type: original
author:
- first_name: Ferdinard U.
full_name: Ogbuisi, Ferdinard U.
last_name: Ogbuisi
- first_name: Yekini
full_name: Shehu, Yekini
id: 3FC7CB58-F248-11E8-B48F-1D18A9856A87
last_name: Shehu
orcid: 0000-0001-9224-7139
- first_name: Jen Chih
full_name: Yao, Jen Chih
last_name: Yao
citation:
ama: Ogbuisi FU, Shehu Y, Yao JC. Convergence analysis of new inertial method for
the split common null point problem. Optimization. 2021. doi:10.1080/02331934.2021.1914035
apa: Ogbuisi, F. U., Shehu, Y., & Yao, J. C. (2021). Convergence analysis of
new inertial method for the split common null point problem. Optimization.
Taylor and Francis. https://doi.org/10.1080/02331934.2021.1914035
chicago: Ogbuisi, Ferdinard U., Yekini Shehu, and Jen Chih Yao. “Convergence Analysis
of New Inertial Method for the Split Common Null Point Problem.” Optimization.
Taylor and Francis, 2021. https://doi.org/10.1080/02331934.2021.1914035.
ieee: F. U. Ogbuisi, Y. Shehu, and J. C. Yao, “Convergence analysis of new inertial
method for the split common null point problem,” Optimization. Taylor and
Francis, 2021.
ista: Ogbuisi FU, Shehu Y, Yao JC. 2021. Convergence analysis of new inertial method
for the split common null point problem. Optimization.
mla: Ogbuisi, Ferdinard U., et al. “Convergence Analysis of New Inertial Method
for the Split Common Null Point Problem.” Optimization, Taylor and Francis,
2021, doi:10.1080/02331934.2021.1914035.
short: F.U. Ogbuisi, Y. Shehu, J.C. Yao, Optimization (2021).
date_created: 2021-05-02T22:01:29Z
date_published: 2021-04-14T00:00:00Z
date_updated: 2023-10-10T09:48:41Z
day: '14'
department:
- _id: VlKo
doi: 10.1080/02331934.2021.1914035
ec_funded: 1
external_id:
isi:
- '000640109300001'
isi: 1
language:
- iso: eng
month: '04'
oa_version: None
project:
- _id: 25FBA906-B435-11E9-9278-68D0E5697425
call_identifier: FP7
grant_number: '616160'
name: 'Discrete Optimization in Computer Vision: Theory and Practice'
publication: Optimization
publication_identifier:
eissn:
- 1029-4945
issn:
- 0233-1934
publication_status: published
publisher: Taylor and Francis
quality_controlled: '1'
scopus_import: '1'
status: public
title: Convergence analysis of new inertial method for the split common null point
problem
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
year: '2021'
...
---
_id: '10365'
abstract:
- lang: eng
text: The early development of many organisms involves the folding of cell monolayers,
but this behaviour is difficult to reproduce in vitro; therefore, both mechanistic
causes and effects of local curvature remain unclear. Here we study epithelial
cell monolayers on corrugated hydrogels engineered into wavy patterns, examining
how concave and convex curvatures affect cellular and nuclear shape. We find that
substrate curvature affects monolayer thickness, which is larger in valleys than
crests. We show that this feature generically arises in a vertex model, leading
to the hypothesis that cells may sense curvature by modifying the thickness of
the tissue. We find that local curvature also affects nuclear morphology and positioning,
which we explain by extending the vertex model to take into account membrane–nucleus
interactions, encoding thickness modulation in changes to nuclear deformation
and position. We propose that curvature governs the spatial distribution of yes-associated
proteins via nuclear shape and density changes. We show that curvature also induces
significant variations in lamins, chromatin condensation and cell proliferation
rate in folded epithelial tissues. Together, this work identifies active cell
mechanics and nuclear mechanoadaptation as the key players of the mechanistic
regulation of epithelia to substrate curvature.
acknowledgement: S.G. acknowledges funding from FEDER Prostem Research Project no.
1510614 (Wallonia DG06), F.R.S.-FNRS Epiforce Research Project no. T.0092.21 and
Interreg MAT(T)ISSE project, which is financially supported by Interreg France-Wallonie-Vlaanderen
(Fonds Européen de Développement Régional, FEDER-ERDF). This project was supported
by the European Research Council under the European Union’s Horizon 2020 Research
and Innovation Programme grant agreement 851288 (to E.H.), and by the Austrian Science
Fund (FWF) (P 31639; to E.H.). L.R.M. acknowledges funding from the Agence National
de la Recherche (ANR), as part of the ‘Investments d’Avenir’ Programme (I-SITE ULNE/ANR-16-IDEX-0004
ULNE). This work benefited from ANR-10-EQPX-04-01 and FEDER 12001407 grants to F.L.
W.D.V. is supported by the Research Foundation Flanders (FWO 1516619N, FWO GOO5819N,
FWO I003420N, FWO IRI I000321N) and is member of the Research Excellence Consortium
µNEURO at the University of Antwerp. M.L. is financially supported by FRIA (F.R.S.-FNRS).
M.S. is a Senior Research Associate of the Fund for Scientific Research (F.R.S.-FNRS)
and acknowledges EOS grant no. 30650939 (PRECISION). Sketches in Figs. 1a and 5e
and Extended Data Fig. 9 were drawn by C. Levicek.
article_processing_charge: No
article_type: original
author:
- first_name: Marine
full_name: Luciano, Marine
last_name: Luciano
- first_name: Shi-lei
full_name: Xue, Shi-lei
id: 31D2C804-F248-11E8-B48F-1D18A9856A87
last_name: Xue
- first_name: Winnok H.
full_name: De Vos, Winnok H.
last_name: De Vos
- first_name: Lorena
full_name: Redondo-Morata, Lorena
last_name: Redondo-Morata
- first_name: Mathieu
full_name: Surin, Mathieu
last_name: Surin
- first_name: Frank
full_name: Lafont, Frank
last_name: Lafont
- first_name: Edouard B
full_name: Hannezo, Edouard B
id: 3A9DB764-F248-11E8-B48F-1D18A9856A87
last_name: Hannezo
orcid: 0000-0001-6005-1561
- first_name: Sylvain
full_name: Gabriele, Sylvain
last_name: Gabriele
citation:
ama: Luciano M, Xue S, De Vos WH, et al. Cell monolayers sense curvature by exploiting
active mechanics and nuclear mechanoadaptation. Nature Physics. 2021;17(12):1382–1390.
doi:10.1038/s41567-021-01374-1
apa: Luciano, M., Xue, S., De Vos, W. H., Redondo-Morata, L., Surin, M., Lafont,
F., … Gabriele, S. (2021). Cell monolayers sense curvature by exploiting active
mechanics and nuclear mechanoadaptation. Nature Physics. Springer Nature.
https://doi.org/10.1038/s41567-021-01374-1
chicago: Luciano, Marine, Shi-lei Xue, Winnok H. De Vos, Lorena Redondo-Morata,
Mathieu Surin, Frank Lafont, Edouard B Hannezo, and Sylvain Gabriele. “Cell Monolayers
Sense Curvature by Exploiting Active Mechanics and Nuclear Mechanoadaptation.”
Nature Physics. Springer Nature, 2021. https://doi.org/10.1038/s41567-021-01374-1.
ieee: M. Luciano et al., “Cell monolayers sense curvature by exploiting active
mechanics and nuclear mechanoadaptation,” Nature Physics, vol. 17, no.
12. Springer Nature, pp. 1382–1390, 2021.
ista: Luciano M, Xue S, De Vos WH, Redondo-Morata L, Surin M, Lafont F, Hannezo
EB, Gabriele S. 2021. Cell monolayers sense curvature by exploiting active mechanics
and nuclear mechanoadaptation. Nature Physics. 17(12), 1382–1390.
mla: Luciano, Marine, et al. “Cell Monolayers Sense Curvature by Exploiting Active
Mechanics and Nuclear Mechanoadaptation.” Nature Physics, vol. 17, no.
12, Springer Nature, 2021, pp. 1382–1390, doi:10.1038/s41567-021-01374-1.
short: M. Luciano, S. Xue, W.H. De Vos, L. Redondo-Morata, M. Surin, F. Lafont,
E.B. Hannezo, S. Gabriele, Nature Physics 17 (2021) 1382–1390.
date_created: 2021-11-28T23:01:29Z
date_published: 2021-11-18T00:00:00Z
date_updated: 2023-10-16T06:31:54Z
day: '18'
ddc:
- '530'
department:
- _id: EdHa
doi: 10.1038/s41567-021-01374-1
ec_funded: 1
external_id:
isi:
- '000720204300004'
file:
- access_level: open_access
checksum: 5d6d76750a71d7cb632bb15417c38ef7
content_type: application/pdf
creator: channezo
date_created: 2023-10-11T09:31:43Z
date_updated: 2023-10-11T09:31:43Z
file_id: '14420'
file_name: 50145_4_merged_1630498627.pdf
file_size: 40285498
relation: main_file
success: 1
file_date_updated: 2023-10-11T09:31:43Z
has_accepted_license: '1'
intvolume: ' 17'
isi: 1
issue: '12'
language:
- iso: eng
month: '11'
oa: 1
oa_version: Submitted Version
page: 1382–1390
project:
- _id: 05943252-7A3F-11EA-A408-12923DDC885E
call_identifier: H2020
grant_number: '851288'
name: Design Principles of Branching Morphogenesis
- _id: 268294B6-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P31639
name: Active mechano-chemical description of the cell cytoskeleton
publication: Nature Physics
publication_identifier:
eissn:
- 1745-2481
issn:
- 1745-2473
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
related_material:
link:
- description: News on IST Webpage
relation: press_release
url: https://ist.ac.at/en/news/how-cells-feel-curvature/
scopus_import: '1'
status: public
title: Cell monolayers sense curvature by exploiting active mechanics and nuclear
mechanoadaptation
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2021'
...
---
_id: '9298'
abstract:
- lang: eng
text: 'In 2008, we published the first set of guidelines for standardizing research
in autophagy. Since then, this topic has received increasing attention, and many
scientists have entered the field. Our knowledge base and relevant new technologies
have also been expanding. Thus, it is important to formulate on a regular basis
updated guidelines for monitoring autophagy in different organisms. Despite numerous
reviews, there continues to be confusion regarding acceptable methods to evaluate
autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines
for investigators to select and interpret methods to examine autophagy and related
processes, and for reviewers to provide realistic and reasonable critiques of
reports that are focused on these processes. These guidelines are not meant to
be a dogmatic set of rules, because the appropriateness of any assay largely depends
on the question being asked and the system being used. Moreover, no individual
assay is perfect for every situation, calling for the use of multiple techniques
to properly monitor autophagy in each experimental setting. Finally, several core
components of the autophagy machinery have been implicated in distinct autophagic
processes (canonical and noncanonical autophagy), implying that genetic approaches
to block autophagy should rely on targeting two or more autophagy-related genes
that ideally participate in distinct steps of the pathway. Along similar lines,
because multiple proteins involved in autophagy also regulate other cellular pathways
including apoptosis, not all of them can be used as a specific marker for bona
fide autophagic responses. Here, we critically discuss current methods of assessing
autophagy and the information they can, or cannot, provide. Our ultimate goal
is to encourage intellectual and technical innovation in the field. '
acknowledgement: This work was supported by the National Institute of General Medical
Sciences [GM131919]. Due to space and other limitations, it is not possible to include
all other sources of financial support.
article_processing_charge: No
article_type: review
author:
- first_name: Daniel J.
full_name: Klionsky, Daniel J.
last_name: Klionsky
- first_name: Amal Kamal
full_name: Abdel-Aziz, Amal Kamal
last_name: Abdel-Aziz
- first_name: Sara
full_name: Abdelfatah, Sara
last_name: Abdelfatah
- first_name: Mahmoud
full_name: Abdellatif, Mahmoud
last_name: Abdellatif
- first_name: Asghar
full_name: Abdoli, Asghar
last_name: Abdoli
- first_name: Steffen
full_name: Abel, Steffen
last_name: Abel
- first_name: Hagai
full_name: Abeliovich, Hagai
last_name: Abeliovich
- first_name: Marie H.
full_name: Abildgaard, Marie H.
last_name: Abildgaard
- first_name: Yakubu Princely
full_name: Abudu, Yakubu Princely
last_name: Abudu
- first_name: Abraham
full_name: Acevedo-Arozena, Abraham
last_name: Acevedo-Arozena
- first_name: Iannis E.
full_name: Adamopoulos, Iannis E.
last_name: Adamopoulos
- first_name: Khosrow
full_name: Adeli, Khosrow
last_name: Adeli
- first_name: Timon E.
full_name: Adolph, Timon E.
last_name: Adolph
- first_name: Annagrazia
full_name: Adornetto, Annagrazia
last_name: Adornetto
- first_name: Elma
full_name: Aflaki, Elma
last_name: Aflaki
- first_name: Galila
full_name: Agam, Galila
last_name: Agam
- first_name: Anupam
full_name: Agarwal, Anupam
last_name: Agarwal
- first_name: Bharat B.
full_name: Aggarwal, Bharat B.
last_name: Aggarwal
- first_name: Maria
full_name: Agnello, Maria
last_name: Agnello
- first_name: Patrizia
full_name: Agostinis, Patrizia
last_name: Agostinis
- first_name: Javed N.
full_name: Agrewala, Javed N.
last_name: Agrewala
- first_name: Alexander
full_name: Agrotis, Alexander
last_name: Agrotis
- first_name: Patricia V.
full_name: Aguilar, Patricia V.
last_name: Aguilar
- first_name: S. Tariq
full_name: Ahmad, S. Tariq
last_name: Ahmad
- first_name: Zubair M.
full_name: Ahmed, Zubair M.
last_name: Ahmed
- first_name: Ulises
full_name: Ahumada-Castro, Ulises
last_name: Ahumada-Castro
- first_name: Sonja
full_name: Aits, Sonja
last_name: Aits
- first_name: Shu
full_name: Aizawa, Shu
last_name: Aizawa
- first_name: Yunus
full_name: Akkoc, Yunus
last_name: Akkoc
- first_name: Tonia
full_name: Akoumianaki, Tonia
last_name: Akoumianaki
- first_name: Hafize Aysin
full_name: Akpinar, Hafize Aysin
last_name: Akpinar
- first_name: Ahmed M.
full_name: Al-Abd, Ahmed M.
last_name: Al-Abd
- first_name: Lina
full_name: Al-Akra, Lina
last_name: Al-Akra
- first_name: Abeer
full_name: Al-Gharaibeh, Abeer
last_name: Al-Gharaibeh
- first_name: Moulay A.
full_name: Alaoui-Jamali, Moulay A.
last_name: Alaoui-Jamali
- first_name: Simon
full_name: Alberti, Simon
last_name: Alberti
- first_name: Elísabet
full_name: Alcocer-Gómez, Elísabet
last_name: Alcocer-Gómez
- first_name: Cristiano
full_name: Alessandri, Cristiano
last_name: Alessandri
- first_name: Muhammad
full_name: Ali, Muhammad
last_name: Ali
- first_name: M. Abdul
full_name: Alim Al-Bari, M. Abdul
last_name: Alim Al-Bari
- first_name: Saeb
full_name: Aliwaini, Saeb
last_name: Aliwaini
- first_name: Javad
full_name: Alizadeh, Javad
last_name: Alizadeh
- first_name: Eugènia
full_name: Almacellas, Eugènia
last_name: Almacellas
- first_name: Alexandru
full_name: Almasan, Alexandru
last_name: Almasan
- first_name: Alicia
full_name: Alonso, Alicia
last_name: Alonso
- first_name: Guillermo D.
full_name: Alonso, Guillermo D.
last_name: Alonso
- first_name: Nihal
full_name: Altan-Bonnet, Nihal
last_name: Altan-Bonnet
- first_name: Dario C.
full_name: Altieri, Dario C.
last_name: Altieri
- first_name: Élida M.C.
full_name: Álvarez, Élida M.C.
last_name: Álvarez
- first_name: Sara
full_name: Alves, Sara
last_name: Alves
- first_name: Cristine
full_name: Alves Da Costa, Cristine
last_name: Alves Da Costa
- first_name: Mazen M.
full_name: Alzaharna, Mazen M.
last_name: Alzaharna
- first_name: Marialaura
full_name: Amadio, Marialaura
last_name: Amadio
- first_name: Consuelo
full_name: Amantini, Consuelo
last_name: Amantini
- first_name: Cristina
full_name: Amaral, Cristina
last_name: Amaral
- first_name: Susanna
full_name: Ambrosio, Susanna
last_name: Ambrosio
- first_name: Amal O.
full_name: Amer, Amal O.
last_name: Amer
- first_name: Veena
full_name: Ammanathan, Veena
last_name: Ammanathan
- first_name: Zhenyi
full_name: An, Zhenyi
last_name: An
- first_name: Stig U.
full_name: Andersen, Stig U.
last_name: Andersen
- first_name: Shaida A.
full_name: Andrabi, Shaida A.
last_name: Andrabi
- first_name: Magaiver
full_name: Andrade-Silva, Magaiver
last_name: Andrade-Silva
- first_name: Allen M.
full_name: Andres, Allen M.
last_name: Andres
- first_name: Sabrina
full_name: Angelini, Sabrina
last_name: Angelini
- first_name: David
full_name: Ann, David
last_name: Ann
- first_name: Uche C.
full_name: Anozie, Uche C.
last_name: Anozie
- first_name: Mohammad Y.
full_name: Ansari, Mohammad Y.
last_name: Ansari
- first_name: Pedro
full_name: Antas, Pedro
last_name: Antas
- first_name: Adam
full_name: Antebi, Adam
last_name: Antebi
- first_name: Zuriñe
full_name: Antón, Zuriñe
last_name: Antón
- first_name: Tahira
full_name: Anwar, Tahira
last_name: Anwar
- first_name: Lionel
full_name: Apetoh, Lionel
last_name: Apetoh
- first_name: Nadezda
full_name: Apostolova, Nadezda
last_name: Apostolova
- first_name: Toshiyuki
full_name: Araki, Toshiyuki
last_name: Araki
- first_name: Yasuhiro
full_name: Araki, Yasuhiro
last_name: Araki
- first_name: Kohei
full_name: Arasaki, Kohei
last_name: Arasaki
- first_name: Wagner L.
full_name: Araújo, Wagner L.
last_name: Araújo
- first_name: Jun
full_name: Araya, Jun
last_name: Araya
- first_name: Catherine
full_name: Arden, Catherine
last_name: Arden
- first_name: Maria Angeles
full_name: Arévalo, Maria Angeles
last_name: Arévalo
- first_name: Sandro
full_name: Arguelles, Sandro
last_name: Arguelles
- first_name: Esperanza
full_name: Arias, Esperanza
last_name: Arias
- first_name: Jyothi
full_name: Arikkath, Jyothi
last_name: Arikkath
- first_name: Hirokazu
full_name: Arimoto, Hirokazu
last_name: Arimoto
- first_name: Aileen R.
full_name: Ariosa, Aileen R.
last_name: Ariosa
- first_name: Darius
full_name: Armstrong-James, Darius
last_name: Armstrong-James
- first_name: Laetitia
full_name: Arnauné-Pelloquin, Laetitia
last_name: Arnauné-Pelloquin
- first_name: Angeles
full_name: Aroca, Angeles
last_name: Aroca
- first_name: Daniela S.
full_name: Arroyo, Daniela S.
last_name: Arroyo
- first_name: Ivica
full_name: Arsov, Ivica
last_name: Arsov
- first_name: Rubén
full_name: Artero, Rubén
last_name: Artero
- first_name: Dalia Maria Lucia
full_name: Asaro, Dalia Maria Lucia
last_name: Asaro
- first_name: Michael
full_name: Aschner, Michael
last_name: Aschner
- first_name: Milad
full_name: Ashrafizadeh, Milad
last_name: Ashrafizadeh
- first_name: Osnat
full_name: Ashur-Fabian, Osnat
last_name: Ashur-Fabian
- first_name: Atanas G.
full_name: Atanasov, Atanas G.
last_name: Atanasov
- first_name: Alicia K.
full_name: Au, Alicia K.
last_name: Au
- first_name: Patrick
full_name: Auberger, Patrick
last_name: Auberger
- first_name: Holger W.
full_name: Auner, Holger W.
last_name: Auner
- first_name: Laure
full_name: Aurelian, Laure
last_name: Aurelian
- first_name: Riccardo
full_name: Autelli, Riccardo
last_name: Autelli
- first_name: Laura
full_name: Avagliano, Laura
last_name: Avagliano
- first_name: Yenniffer
full_name: Ávalos, Yenniffer
last_name: Ávalos
- first_name: Sanja
full_name: Aveic, Sanja
last_name: Aveic
- first_name: Célia Alexandra
full_name: Aveleira, Célia Alexandra
last_name: Aveleira
- first_name: Tamar
full_name: Avin-Wittenberg, Tamar
last_name: Avin-Wittenberg
- first_name: Yucel
full_name: Aydin, Yucel
last_name: Aydin
- first_name: Scott
full_name: Ayton, Scott
last_name: Ayton
- first_name: Srinivas
full_name: Ayyadevara, Srinivas
last_name: Ayyadevara
- first_name: Maria
full_name: Azzopardi, Maria
last_name: Azzopardi
- first_name: Misuzu
full_name: Baba, Misuzu
last_name: Baba
- first_name: Jonathan M.
full_name: Backer, Jonathan M.
last_name: Backer
- first_name: Steven K.
full_name: Backues, Steven K.
last_name: Backues
- first_name: Dong Hun
full_name: Bae, Dong Hun
last_name: Bae
- first_name: Ok Nam
full_name: Bae, Ok Nam
last_name: Bae
- first_name: Soo Han
full_name: Bae, Soo Han
last_name: Bae
- first_name: Eric H.
full_name: Baehrecke, Eric H.
last_name: Baehrecke
- first_name: Ahruem
full_name: Baek, Ahruem
last_name: Baek
- first_name: Seung Hoon
full_name: Baek, Seung Hoon
last_name: Baek
- first_name: Sung Hee
full_name: Baek, Sung Hee
last_name: Baek
- first_name: Giacinto
full_name: Bagetta, Giacinto
last_name: Bagetta
- first_name: Agnieszka
full_name: Bagniewska-Zadworna, Agnieszka
last_name: Bagniewska-Zadworna
- first_name: Hua
full_name: Bai, Hua
last_name: Bai
- first_name: Jie
full_name: Bai, Jie
last_name: Bai
- first_name: Xiyuan
full_name: Bai, Xiyuan
last_name: Bai
- first_name: Yidong
full_name: Bai, Yidong
last_name: Bai
- first_name: Nandadulal
full_name: Bairagi, Nandadulal
last_name: Bairagi
- first_name: Shounak
full_name: Baksi, Shounak
last_name: Baksi
- first_name: Teresa
full_name: Balbi, Teresa
last_name: Balbi
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full_name: Canonico, Barbara
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full_name: Casanova, Magali
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last_name: Casas
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full_name: Hwang, Seungmin
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full_name: Ikeda, Fumiyo
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last_name: Imagawa
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last_name: Imai
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full_name: Ito, Daisuke
last_name: Ito
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last_name: Jacomin
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last_name: Jean
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last_name: Jin
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last_name: Jin
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full_name: Jin, Si
last_name: Jin
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full_name: Ju, Jeong Sun
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full_name: Ju, Jingfang
last_name: Ju
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last_name: Juárez
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full_name: Judith, Delphine
last_name: Judith
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full_name: Juhász, Gábor
last_name: Juhász
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full_name: Jun, Youngsoo
last_name: Jun
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full_name: Jung, Chang Hwa
last_name: Jung
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full_name: Jung, Sung Chul
last_name: Jung
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full_name: Jung, Yong Keun
last_name: Jung
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full_name: Jungbluth, Heinz
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full_name: Jungverdorben, Johannes
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full_name: Just, Steffen
last_name: Just
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full_name: Kaarniranta, Kai
last_name: Kaarniranta
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full_name: Kaasik, Allen
last_name: Kaasik
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full_name: Kabuta, Tomohiro
last_name: Kabuta
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full_name: Kaganovich, Daniel
last_name: Kaganovich
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full_name: Kahana, Alon
last_name: Kahana
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full_name: Kain, Renate
last_name: Kain
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full_name: Kaludercic, Nina
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full_name: Kalvari, Ioanna
last_name: Kalvari
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full_name: Kanamori, Hiromitsu
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full_name: Kanasaki, Keizo
last_name: Kanasaki
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last_name: Kang
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full_name: Kang, Rui
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full_name: Kang, Sang Sun
last_name: Kang
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full_name: Kanki, Tomotake
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full_name: Kawasaki, Kiyoshi
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last_name: Kenific
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last_name: Khalil
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last_name: Khambu
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full_name: Khandelwal, Vinoth Kumar Megraj
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last_name: Kim
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last_name: Kim
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full_name: Hyung-Ryong Kim, Unknown
last_name: Hyung-Ryong Kim
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full_name: Kim, Jeong Hun
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Z.Y. Zhou, Z. Zhou, B. Zhu, C. Zhu, G.Q. Zhu, H. Zhu, H. Zhu, H. Zhu, W.G. Zhu,
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date_created: 2021-03-28T22:01:44Z
date_published: 2021-02-08T00:00:00Z
date_updated: 2023-10-16T09:43:56Z
day: '08'
department:
- _id: JiFr
- _id: CaHe
doi: 10.1080/15548627.2020.1797280
external_id:
isi:
- '000636121800001'
pmid:
- '33634751'
intvolume: ' 17'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://doi.org/10.1080/15548627.2020.1797280
month: '02'
oa: 1
oa_version: Published Version
page: 1-382
pmid: 1
publication: Autophagy
publication_identifier:
eissn:
- 1554-8635
issn:
- 1554-8627
publication_status: published
publisher: Taylor & Francis
quality_controlled: '1'
scopus_import: '1'
status: public
title: Guidelines for the use and interpretation of assays for monitoring autophagy
(4th edition)
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 17
year: '2021'
...
---
_id: '8742'
abstract:
- lang: eng
text: We develop a version of Ekedahl’s geometric sieve for integral quadratic forms
of rank at least five. As one ranges over the zeros of such quadratic forms, we
use the sieve to compute the density of coprime values of polynomials, and furthermore,
to address a question about local solubility in families of varieties parameterised
by the zeros.
article_processing_charge: No
article_type: original
author:
- first_name: Timothy D
full_name: Browning, Timothy D
id: 35827D50-F248-11E8-B48F-1D18A9856A87
last_name: Browning
orcid: 0000-0002-8314-0177
- first_name: Roger
full_name: Heath-Brown, Roger
last_name: Heath-Brown
citation:
ama: Browning TD, Heath-Brown R. The geometric sieve for quadrics. Forum Mathematicum.
2021;33(1):147-165. doi:10.1515/forum-2020-0074
apa: Browning, T. D., & Heath-Brown, R. (2021). The geometric sieve for quadrics.
Forum Mathematicum. De Gruyter. https://doi.org/10.1515/forum-2020-0074
chicago: Browning, Timothy D, and Roger Heath-Brown. “The Geometric Sieve for Quadrics.”
Forum Mathematicum. De Gruyter, 2021. https://doi.org/10.1515/forum-2020-0074.
ieee: T. D. Browning and R. Heath-Brown, “The geometric sieve for quadrics,” Forum
Mathematicum, vol. 33, no. 1. De Gruyter, pp. 147–165, 2021.
ista: Browning TD, Heath-Brown R. 2021. The geometric sieve for quadrics. Forum
Mathematicum. 33(1), 147–165.
mla: Browning, Timothy D., and Roger Heath-Brown. “The Geometric Sieve for Quadrics.”
Forum Mathematicum, vol. 33, no. 1, De Gruyter, 2021, pp. 147–65, doi:10.1515/forum-2020-0074.
short: T.D. Browning, R. Heath-Brown, Forum Mathematicum 33 (2021) 147–165.
date_created: 2020-11-08T23:01:25Z
date_published: 2021-01-01T00:00:00Z
date_updated: 2023-10-17T07:39:01Z
day: '01'
department:
- _id: TiBr
doi: 10.1515/forum-2020-0074
external_id:
arxiv:
- '2003.09593'
isi:
- '000604750900008'
intvolume: ' 33'
isi: 1
issue: '1'
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://arxiv.org/abs/2003.09593
month: '01'
oa: 1
oa_version: Preprint
page: 147-165
project:
- _id: 26AEDAB2-B435-11E9-9278-68D0E5697425
call_identifier: FWF
grant_number: P32428
name: New frontiers of the Manin conjecture
publication: Forum Mathematicum
publication_identifier:
eissn:
- 1435-5337
issn:
- 0933-7741
publication_status: published
publisher: De Gruyter
quality_controlled: '1'
scopus_import: '1'
status: public
title: The geometric sieve for quadrics
type: journal_article
user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87
volume: 33
year: '2021'
...
---
_id: '10035'
abstract:
- lang: eng
text: 'Many security definitions come in two flavors: a stronger “adaptive” flavor,
where the adversary can arbitrarily make various choices during the course of
the attack, and a weaker “selective” flavor where the adversary must commit to
some or all of their choices a-priori. For example, in the context of identity-based
encryption, selective security requires the adversary to decide on the identity
of the attacked party at the very beginning of the game whereas adaptive security
allows the attacker to first see the master public key and some secret keys before
making this choice. Often, it appears to be much easier to achieve selective security
than it is to achieve adaptive security. A series of several recent works shows
how to cleverly achieve adaptive security in several such scenarios including
generalized selective decryption [Pan07][FJP15], constrained PRFs [FKPR14], and
Yao’s garbled circuits [JW16]. Although the above works expressed vague intuition
that they share a common technique, the connection was never made precise. In
this work we present a new framework (published at Crypto ’17 [JKK+17a]) that
connects all of these works and allows us to present them in a unified and simplified
fashion. Having the framework in place, we show how to achieve adaptive security
for proxy re-encryption schemes (published at PKC ’19 [FKKP19]) and provide the
first adaptive security proofs for continuous group key agreement protocols (published
at S&P ’21 [KPW+21]). Questioning optimality of our framework, we then show that
currently used proof techniques cannot lead to significantly better security guarantees
for "graph-building" games (published at TCC ’21 [KKPW21a]). These games cover
generalized selective decryption, as well as the security of prominent constructions
for constrained PRFs, continuous group key agreement, and proxy re-encryption.
Finally, we revisit the adaptive security of Yao’s garbled circuits and extend
the analysis of Jafargholi and Wichs in two directions: While they prove adaptive
security only for a modified construction with increased online complexity, we
provide the first positive results for the original construction by Yao (published
at TCC ’21 [KKP21a]). On the negative side, we prove that the results of Jafargholi
and Wichs are essentially optimal by showing that no black-box reduction can provide
a significantly better security bound (published at Crypto ’21 [KKPW21c]).'
acknowledgement: "I want to acknowledge the funding by the European Research Council
(ERC) under the European Union’s Horizon 2020 research and innovation programme
(682815 - TOCNeT).\r\n"
alternative_title:
- ISTA Thesis
article_processing_charge: No
author:
- first_name: Karen
full_name: Klein, Karen
id: 3E83A2F8-F248-11E8-B48F-1D18A9856A87
last_name: Klein
citation:
ama: Klein K. On the adaptive security of graph-based games. 2021. doi:10.15479/at:ista:10035
apa: Klein, K. (2021). On the adaptive security of graph-based games. Institute
of Science and Technology Austria. https://doi.org/10.15479/at:ista:10035
chicago: Klein, Karen. “On the Adaptive Security of Graph-Based Games.” Institute
of Science and Technology Austria, 2021. https://doi.org/10.15479/at:ista:10035.
ieee: K. Klein, “On the adaptive security of graph-based games,” Institute of Science
and Technology Austria, 2021.
ista: Klein K. 2021. On the adaptive security of graph-based games. Institute of
Science and Technology Austria.
mla: Klein, Karen. On the Adaptive Security of Graph-Based Games. Institute
of Science and Technology Austria, 2021, doi:10.15479/at:ista:10035.
short: K. Klein, On the Adaptive Security of Graph-Based Games, Institute of Science
and Technology Austria, 2021.
date_created: 2021-09-23T07:31:44Z
date_published: 2021-09-23T00:00:00Z
date_updated: 2023-10-17T09:24:07Z
day: '23'
ddc:
- '519'
degree_awarded: PhD
department:
- _id: GradSch
- _id: KrPi
doi: 10.15479/at:ista:10035
ec_funded: 1
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file_id: '10085'
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month: '09'
oa: 1
oa_version: Published Version
page: '276'
project:
- _id: 258AA5B2-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '682815'
name: Teaching Old Crypto New Tricks
publication_identifier:
issn:
- 2663-337X
publication_status: published
publisher: Institute of Science and Technology Austria
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relation: part_of_dissertation
status: public
status: public
supervisor:
- first_name: Krzysztof Z
full_name: Pietrzak, Krzysztof Z
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
title: On the adaptive security of graph-based games
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...
---
_id: '10410'
abstract:
- lang: eng
text: The security of cryptographic primitives and protocols against adversaries
that are allowed to make adaptive choices (e.g., which parties to corrupt or which
queries to make) is notoriously difficult to establish. A broad theoretical framework
was introduced by Jafargholi et al. [Crypto’17] for this purpose. In this paper
we initiate the study of lower bounds on loss in adaptive security for certain
cryptographic protocols considered in the framework. We prove lower bounds that
almost match the upper bounds (proven using the framework) for proxy re-encryption,
prefix-constrained PRFs and generalized selective decryption, a security game
that captures the security of certain group messaging and broadcast encryption
schemes. Those primitives have in common that their security game involves an
underlying graph that can be adaptively built by the adversary. Some of our lower
bounds only apply to a restricted class of black-box reductions which we term
“oblivious” (the existing upper bounds are of this restricted type), some apply
to the broader but still restricted class of non-rewinding reductions, while our
lower bound for proxy re-encryption applies to all black-box reductions. The fact
that some of our lower bounds seem to crucially rely on obliviousness or at least
a non-rewinding reduction hints to the exciting possibility that the existing
upper bounds can be improved by using more sophisticated reductions. Our main
conceptual contribution is a two-player multi-stage game called the Builder-Pebbler
Game. We can translate bounds on the winning probabilities for various instantiations
of this game into cryptographic lower bounds for the above-mentioned primitives
using oracle separation techniques.
acknowledgement: C. Kamath—Supported by Azrieli International Postdoctoral Fellowship.
Most of the work was done while the author was at Northeastern University and Charles
University, funded by the IARPA grant IARPA/2019-19-020700009 and project PRIMUS/17/SCI/9,
respectively. K. Klein—Supported in part by ERC CoG grant 724307. Most of the work
was done while the author was at IST Austria funded by the European Research Council
(ERC) under the European Union’s Horizon 2020 research and innovation programme
(682815 - TOCNeT). K. Pietrzak—Funded by the European Research Council (ERC) under
the European Union’s Horizon 2020 research and innovation programme (682815 - TOCNeT).
alternative_title:
- LNCS
article_processing_charge: No
author:
- first_name: Chethan
full_name: Kamath Hosdurg, Chethan
id: 4BD3F30E-F248-11E8-B48F-1D18A9856A87
last_name: Kamath Hosdurg
- first_name: Karen
full_name: Klein, Karen
id: 3E83A2F8-F248-11E8-B48F-1D18A9856A87
last_name: Klein
- first_name: Krzysztof Z
full_name: Pietrzak, Krzysztof Z
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
- first_name: Michael
full_name: Walter, Michael
id: 488F98B0-F248-11E8-B48F-1D18A9856A87
last_name: Walter
orcid: 0000-0003-3186-2482
citation:
ama: 'Kamath Hosdurg C, Klein K, Pietrzak KZ, Walter M. The cost of adaptivity in
security games on graphs. In: 19th International Conference. Vol 13043.
Springer Nature; 2021:550-581. doi:10.1007/978-3-030-90453-1_19'
apa: 'Kamath Hosdurg, C., Klein, K., Pietrzak, K. Z., & Walter, M. (2021). The
cost of adaptivity in security games on graphs. In 19th International Conference
(Vol. 13043, pp. 550–581). Raleigh, NC, United States: Springer Nature. https://doi.org/10.1007/978-3-030-90453-1_19'
chicago: Kamath Hosdurg, Chethan, Karen Klein, Krzysztof Z Pietrzak, and Michael
Walter. “The Cost of Adaptivity in Security Games on Graphs.” In 19th International
Conference, 13043:550–81. Springer Nature, 2021. https://doi.org/10.1007/978-3-030-90453-1_19.
ieee: C. Kamath Hosdurg, K. Klein, K. Z. Pietrzak, and M. Walter, “The cost of adaptivity
in security games on graphs,” in 19th International Conference, Raleigh,
NC, United States, 2021, vol. 13043, pp. 550–581.
ista: 'Kamath Hosdurg C, Klein K, Pietrzak KZ, Walter M. 2021. The cost of adaptivity
in security games on graphs. 19th International Conference. TCC: Theory of Cryptography,
LNCS, vol. 13043, 550–581.'
mla: Kamath Hosdurg, Chethan, et al. “The Cost of Adaptivity in Security Games on
Graphs.” 19th International Conference, vol. 13043, Springer Nature, 2021,
pp. 550–81, doi:10.1007/978-3-030-90453-1_19.
short: C. Kamath Hosdurg, K. Klein, K.Z. Pietrzak, M. Walter, in:, 19th International
Conference, Springer Nature, 2021, pp. 550–581.
conference:
end_date: 2021-11-11
location: Raleigh, NC, United States
name: 'TCC: Theory of Cryptography'
start_date: 2021-11-08
date_created: 2021-12-05T23:01:43Z
date_published: 2021-11-04T00:00:00Z
date_updated: 2023-10-17T09:24:07Z
day: '04'
department:
- _id: KrPi
doi: 10.1007/978-3-030-90453-1_19
ec_funded: 1
external_id:
isi:
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intvolume: ' 13043'
isi: 1
language:
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url: https://ia.cr/2021/059
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oa: 1
oa_version: Preprint
page: 550-581
project:
- _id: 258AA5B2-B435-11E9-9278-68D0E5697425
call_identifier: H2020
grant_number: '682815'
name: Teaching Old Crypto New Tricks
publication: 19th International Conference
publication_identifier:
eissn:
- 1611-3349
isbn:
- 9-783-0309-0452-4
issn:
- 0302-9743
publication_status: published
publisher: Springer Nature
quality_controlled: '1'
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title: The cost of adaptivity in security games on graphs
type: conference
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volume: 13043
year: '2021'
...
---
_id: '10048'
abstract:
- lang: eng
text: "The security of cryptographic primitives and protocols against adversaries
that are allowed to make adaptive choices (e.g., which parties to corrupt or which
queries to make) is notoriously difficult to establish. A broad theoretical\r\nframework
was introduced by Jafargholi et al. [Crypto’17] for this purpose. In this paper
we initiate the study of lower bounds on loss in adaptive security for certain
cryptographic protocols considered in the framework. We prove lower\r\nbounds
that almost match the upper bounds (proven using the framework) for proxy re-encryption,
prefix-constrained PRFs and generalized selective decryption, a security game
that captures the security of certain group messaging and\r\nbroadcast encryption
schemes. Those primitives have in common that their security game involves an
underlying graph that can be adaptively built by the adversary. Some of our lower
bounds only apply to a restricted class of black-box reductions which we term
“oblivious” (the existing upper bounds are of this restricted type), some apply
to the broader but still restricted class of non-rewinding reductions, while our
lower bound for proxy re-encryption applies to all black-box reductions. The fact
that some of our lower bounds seem to crucially rely on obliviousness or at least
a non-rewinding reduction hints to the exciting possibility that the existing
upper bounds can be improved by using more sophisticated reductions. Our main
conceptual contribution is a two-player multi-stage game called the Builder-Pebbler
Game. We can translate bounds on the winning probabilities for various instantiations
of this game into cryptographic lower bounds for the above-mentioned primitives
using oracle separation techniques.\r\n"
article_processing_charge: No
author:
- first_name: Chethan
full_name: Kamath Hosdurg, Chethan
id: 4BD3F30E-F248-11E8-B48F-1D18A9856A87
last_name: Kamath Hosdurg
- first_name: Karen
full_name: Klein, Karen
id: 3E83A2F8-F248-11E8-B48F-1D18A9856A87
last_name: Klein
- first_name: Krzysztof Z
full_name: Pietrzak, Krzysztof Z
id: 3E04A7AA-F248-11E8-B48F-1D18A9856A87
last_name: Pietrzak
orcid: 0000-0002-9139-1654
- first_name: Michael
full_name: Walter, Michael
id: 488F98B0-F248-11E8-B48F-1D18A9856A87
last_name: Walter
orcid: 0000-0003-3186-2482
citation:
ama: 'Kamath Hosdurg C, Klein K, Pietrzak KZ, Walter M. The cost of adaptivity in
security games on graphs. In: 19th Theory of Cryptography Conference 2021.
International Association for Cryptologic Research; 2021.'
apa: 'Kamath Hosdurg, C., Klein, K., Pietrzak, K. Z., & Walter, M. (2021). The
cost of adaptivity in security games on graphs. In 19th Theory of Cryptography
Conference 2021. Raleigh, NC, United States: International Association for
Cryptologic Research.'
chicago: Kamath Hosdurg, Chethan, Karen Klein, Krzysztof Z Pietrzak, and Michael
Walter. “The Cost of Adaptivity in Security Games on Graphs.” In 19th Theory
of Cryptography Conference 2021. International Association for Cryptologic
Research, 2021.
ieee: C. Kamath Hosdurg, K. Klein, K. Z. Pietrzak, and M. Walter, “The cost of adaptivity
in security games on graphs,” in 19th Theory of Cryptography Conference 2021,
Raleigh, NC, United States, 2021.
ista: 'Kamath Hosdurg C, Klein K, Pietrzak KZ, Walter M. 2021. The cost of adaptivity
in security games on graphs. 19th Theory of Cryptography Conference 2021. TCC:
Theory of Cryptography Conference.'
mla: Kamath Hosdurg, Chethan, et al. “The Cost of Adaptivity in Security Games on
Graphs.” 19th Theory of Cryptography Conference 2021, International Association
for Cryptologic Research, 2021.
short: C. Kamath Hosdurg, K. Klein, K.Z. Pietrzak, M. Walter, in:, 19th Theory of
Cryptography Conference 2021, International Association for Cryptologic Research,
2021.
conference:
end_date: 2021-11-11
location: Raleigh, NC, United States
name: 'TCC: Theory of Cryptography Conference'
start_date: 2021-11-08
date_created: 2021-09-27T12:52:05Z
date_published: 2021-07-08T00:00:00Z
date_updated: 2023-10-17T09:24:08Z
day: '08'
department:
- _id: KrPi
language:
- iso: eng
main_file_link:
- open_access: '1'
url: https://ia.cr/2021/059
month: '07'
oa: 1
oa_version: Preprint
publication: 19th Theory of Cryptography Conference 2021
publication_status: published
publisher: International Association for Cryptologic Research
quality_controlled: '1'
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type: conference
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...