[{"tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"oa":1,"citation":{"ama":"Villányi M. Emerald Austrian Publications 2013-2017. 2018. doi:10.15479/AT:ISTA:89","ista":"Villányi M. 2018. Emerald Austrian Publications 2013-2017, Institute of Science and Technology Austria, 10.15479/AT:ISTA:89.","ieee":"M. Villányi, “Emerald Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018.","apa":"Villányi, M. (2018). Emerald Austrian Publications 2013-2017. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:89","mla":"Villányi, Márton. Emerald Austrian Publications 2013-2017. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:89.","short":"M. Villányi, (2018).","chicago":"Villányi, Márton. “Emerald Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:89."},"doi":"10.15479/AT:ISTA:89","date_published":"2018-01-16T00:00:00Z","keyword":["Publication analysis","Bibliography","Open Access"],"article_processing_charge":"No","has_accepted_license":"1","day":"16","month":"01","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"5577","year":"2018","department":[{"_id":"E-Lib"}],"publisher":"Institute of Science and Technology Austria","title":"Emerald Austrian Publications 2013-2017","status":"public","ddc":["020"],"related_material":{"record":[{"relation":"part_of_dissertation","status":"public","id":"278"}]},"author":[{"orcid":"0000-0001-8126-0426","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","last_name":"Villányi","first_name":"Márton","full_name":"Villányi, Márton"}],"file":[{"file_name":"IST-2018-89-v1+1_Emerald_Austrian_Publications_2013-2017.zip","access_level":"open_access","file_size":222011,"content_type":"application/zip","creator":"system","relation":"main_file","file_id":"5604","date_created":"2018-12-12T13:02:39Z","date_updated":"2020-07-14T12:47:06Z","checksum":"786b599abfae6c355dee87835f414549"}],"oa_version":"Submitted Version","date_updated":"2024-02-21T13:41:32Z","date_created":"2018-12-12T12:31:37Z","type":"research_data","datarep_id":"89","file_date_updated":"2020-07-14T12:47:06Z","abstract":[{"text":"Data on Austrian open access publication output at Emerald from 2013-2017 including data analysis.","lang":"ger"}],"license":"https://creativecommons.org/publicdomain/zero/1.0/"},{"keyword":["Publication analysis","Bibliography","Open Access"],"day":"16","month":"01","has_accepted_license":"1","article_processing_charge":"No","tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"oa":1,"citation":{"chicago":"Villányi, Márton. “IOP Austrian Publications 2012-2015.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:90.","short":"M. Villányi, (2018).","mla":"Villányi, Márton. IOP Austrian Publications 2012-2015. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:90.","apa":"Villányi, M. (2018). IOP Austrian Publications 2012-2015. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:90","ieee":"M. Villányi, “IOP Austrian Publications 2012-2015.” Institute of Science and Technology Austria, 2018.","ista":"Villányi M. 2018. IOP Austrian Publications 2012-2015, Institute of Science and Technology Austria, 10.15479/AT:ISTA:90.","ama":"Villányi M. IOP Austrian Publications 2012-2015. 2018. doi:10.15479/AT:ISTA:90"},"doi":"10.15479/AT:ISTA:90","date_published":"2018-01-16T00:00:00Z","datarep_id":"90","type":"research_data","abstract":[{"lang":"ger","text":"Data on Austrian open access publication output at IOP from 2012-2015 including data analysis."}],"file_date_updated":"2020-07-14T12:47:06Z","year":"2018","_id":"5578","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["020"],"status":"public","title":"IOP Austrian Publications 2012-2015","publisher":"Institute of Science and Technology Austria","department":[{"_id":"E-Lib"}],"author":[{"id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8126-0426","first_name":"Márton","last_name":"Villányi","full_name":"Villányi, Márton"}],"related_material":{"record":[{"id":"278","relation":"part_of_dissertation","status":"public"}]},"date_updated":"2024-02-21T13:42:36Z","date_created":"2018-12-12T12:31:38Z","oa_version":"Submitted Version","file":[{"checksum":"a4f1bf041ccd4c35912e2d595b0c2883","date_updated":"2020-07-14T12:47:06Z","date_created":"2018-12-12T13:03:06Z","relation":"main_file","file_id":"5624","file_size":237067,"content_type":"application/zip","creator":"system","access_level":"open_access","file_name":"IST-2018-90-v1+1_IOP_Austrian_Publications_2012-2015.zip"}]},{"article_processing_charge":"No","has_accepted_license":"1","day":"16","month":"01","keyword":["Publication analysis","Bibliography","Open Access"],"date_published":"2018-01-16T00:00:00Z","doi":"10.15479/AT:ISTA:86","tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"oa":1,"citation":{"ama":"Villányi M. Data Check IOP Scopus vs. Publisher. 2018. doi:10.15479/AT:ISTA:86","ieee":"M. Villányi, “Data Check IOP Scopus vs. Publisher.” Institute of Science and Technology Austria, 2018.","apa":"Villányi, M. (2018). Data Check IOP Scopus vs. Publisher. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:86","ista":"Villányi M. 2018. Data Check IOP Scopus vs. Publisher, Institute of Science and Technology Austria, 10.15479/AT:ISTA:86.","short":"M. Villányi, (2018).","mla":"Villányi, Márton. Data Check IOP Scopus vs. Publisher. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:86.","chicago":"Villányi, Márton. “Data Check IOP Scopus vs. Publisher.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:86."},"file_date_updated":"2020-07-14T12:47:05Z","abstract":[{"lang":"ger","text":"Comparison of Scopus' and publisher's data on Austrian publication output at IOP. "}],"type":"research_data","datarep_id":"86","oa_version":"Submitted Version","file":[{"checksum":"c7a61147bd15cb4ae45878d270628c06","date_created":"2018-12-12T13:05:14Z","date_updated":"2020-07-14T12:47:05Z","file_id":"5642","relation":"main_file","creator":"system","file_size":12283857,"content_type":"application/zip","access_level":"open_access","file_name":"IST-2018-86-v1+1_Data_Check_IOP_Scopus_vs._Publisher.zip"}],"date_created":"2018-12-12T12:31:37Z","date_updated":"2024-02-21T13:42:21Z","related_material":{"record":[{"relation":"part_of_dissertation","status":"public","id":"278"}]},"author":[{"full_name":"Villányi, Márton","last_name":"Villányi","first_name":"Márton","orcid":"0000-0001-8126-0426","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87"}],"publisher":"Institute of Science and Technology Austria","department":[{"_id":"E-Lib"}],"status":"public","title":"Data Check IOP Scopus vs. Publisher","ddc":["020"],"user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"5574","year":"2018"},{"_id":"278","year":"2018","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"E-Lib"}],"publisher":"Universität Wien","status":"public","title":"Lizenzverträge mit Open-Access-Komponenten an österreichischen Bibliotheken","publication_status":"published","related_material":{"record":[{"id":"5577","relation":"dissertation_contains","status":"public"},{"status":"public","relation":"dissertation_contains","id":"5574"},{"relation":"dissertation_contains","status":"public","id":"5578"},{"status":"public","relation":"dissertation_contains","id":"5579"},{"status":"public","relation":"dissertation_contains","id":"5576"},{"relation":"dissertation_contains","status":"public","id":"5575"},{"relation":"dissertation_contains","status":"public","id":"5582"},{"id":"5581","status":"public","relation":"dissertation_contains"},{"status":"public","relation":"dissertation_contains","id":"5580"}]},"author":[{"full_name":"Villányi, Márton","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8126-0426","first_name":"Márton","last_name":"Villányi"}],"oa_version":"Published Version","date_updated":"2024-02-21T13:44:07Z","date_created":"2018-12-11T11:45:34Z","type":"dissertation","publist_id":"7624","abstract":[{"text":"Consortial subscription contracts regulate the digital access to publications between publishers and scientific libraries. However, since a couple of years the tendency towards a freely accessible publishing (Open Access) intensifies. As a consequence of this trend the contractual relationship between licensor and licensee is gradually changing as well: More and more contracts exercise influence on open access publishing. The present study attempts to compare Austrian examples of consortial licence contracts, which include components of open access. It describes the difference between pure subscription contracts and differing innovative deals including open access components. Thereby it becomes obvious that for the evaluation of this licence contracts new methods are needed. An essential new element of such analyses is the evaluation of the open access publication numbers. So this study tries to carry out such publication analyses for Austrian open access deals focusing on quantitative questions: How does the number of publications evolve? How does the open access share change? Publications reports of the publishers and database queries from Scopus form the data basis. The analysis of the data points out that differing approaches of contracts result in highly divergent results: Particular deals can prioritize a saving in costs or else the increase of the open access rate. It is to be assumed that within the following years further numerous open access deals will be negotiated. The finding of this study shall provide guidance.","lang":"eng"}],"main_file_link":[{"open_access":"1","url":"http://othes.univie.ac.at/51113/"}],"oa":1,"citation":{"apa":"Villányi, M. (2018). Lizenzverträge mit Open-Access-Komponenten an österreichischen Bibliotheken. Universität Wien.","ieee":"M. Villányi, “Lizenzverträge mit Open-Access-Komponenten an österreichischen Bibliotheken,” Universität Wien, 2018.","ista":"Villányi M. 2018. Lizenzverträge mit Open-Access-Komponenten an österreichischen Bibliotheken. Universität Wien.","ama":"Villányi M. Lizenzverträge mit Open-Access-Komponenten an österreichischen Bibliotheken. 2018.","chicago":"Villányi, Márton. “Lizenzverträge mit Open-Access-Komponenten an österreichischen Bibliotheken.” Universität Wien, 2018.","short":"M. Villányi, Lizenzverträge mit Open-Access-Komponenten an österreichischen Bibliotheken, Universität Wien, 2018.","mla":"Villányi, Márton. Lizenzverträge mit Open-Access-Komponenten an österreichischen Bibliotheken. Universität Wien, 2018."},"page":"94","date_published":"2018-04-06T00:00:00Z","language":[{"iso":"ger"}],"supervisor":[{"full_name":"Kromp, Brigitte","last_name":"Kromp","first_name":"Brigitte"}],"month":"04","day":"06"},{"month":"11","day":"07","article_processing_charge":"No","has_accepted_license":"1","keyword":["FLIM","FRET","fluorescence lifetime imaging"],"date_published":"2018-11-07T00:00:00Z","doi":"10.15479/AT:ISTA:0113","citation":{"mla":"Hauschild, Robert. Fluorescence Lifetime Analysis of FLIM X16 TCSPC Data. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:0113.","short":"R. Hauschild, (2018).","chicago":"Hauschild, Robert. “Fluorescence Lifetime Analysis of FLIM X16 TCSPC Data.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:0113.","ama":"Hauschild R. Fluorescence lifetime analysis of FLIM X16 TCSPC data. 2018. doi:10.15479/AT:ISTA:0113","ista":"Hauschild R. 2018. Fluorescence lifetime analysis of FLIM X16 TCSPC data, Institute of Science and Technology Austria, 10.15479/AT:ISTA:0113.","apa":"Hauschild, R. (2018). Fluorescence lifetime analysis of FLIM X16 TCSPC data. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:0113","ieee":"R. Hauschild, “Fluorescence lifetime analysis of FLIM X16 TCSPC data.” Institute of Science and Technology Austria, 2018."},"tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"oa":1,"file_date_updated":"2020-07-14T12:47:08Z","abstract":[{"lang":"eng","text":"Script to perform a simple exponential lifetime fit of a ROI on time stacks acquired with a FLIM X16 TCSPC detector (+example data)"}],"datarep_id":"113","type":"research_data","author":[{"full_name":"Hauschild, Robert","last_name":"Hauschild","first_name":"Robert","orcid":"0000-0001-9843-3522","id":"4E01D6B4-F248-11E8-B48F-1D18A9856A87"}],"date_created":"2018-12-12T12:31:41Z","date_updated":"2024-02-21T13:44:21Z","oa_version":"Published Version","file":[{"file_size":47866557,"content_type":"application/x-zip-compressed","creator":"rhauschild","file_name":"IST-2018-113-v1+1_FLIMX16TCSPCLifeTimeFit.zip","access_level":"open_access","date_updated":"2020-07-14T12:47:08Z","date_created":"2019-04-11T18:15:01Z","checksum":"a4e160054c9114600624cf89a925fd7d","relation":"main_file","file_id":"6296"}],"_id":"5588","year":"2018","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","ddc":["570"],"status":"public","title":"Fluorescence lifetime analysis of FLIM X16 TCSPC data","publisher":"Institute of Science and Technology Austria","department":[{"_id":"Bio"}]},{"file_date_updated":"2020-07-14T12:47:07Z","abstract":[{"lang":"eng","text":"Data on Austrian open access publication output at Taylor&Francis from 2013-2017 including data analysis."}],"datarep_id":"94","type":"research_data","author":[{"full_name":"Villányi, Márton","orcid":"0000-0001-8126-0426","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","last_name":"Villányi","first_name":"Márton"}],"related_material":{"record":[{"id":"278","status":"public","relation":"part_of_dissertation"}]},"date_updated":"2024-02-21T13:43:41Z","date_created":"2018-12-12T12:31:39Z","oa_version":"Submitted Version","file":[{"creator":"system","content_type":"application/zip","file_size":2552326,"file_name":"IST-2018-94-v1+1_Taylor_Francis_Austrian_Publications_2013-2017.zip","access_level":"open_access","date_created":"2018-12-12T13:02:59Z","date_updated":"2020-07-14T12:47:07Z","checksum":"3e000daf15d7eb9a47b234f3d20dd4b8","file_id":"5617","relation":"main_file"}],"year":"2018","_id":"5582","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","status":"public","ddc":["020"],"title":"Taylor&Francis Austrian Publications 2013-2017","department":[{"_id":"E-Lib"}],"publisher":"Institute of Science and Technology Austria","month":"01","day":"16","has_accepted_license":"1","article_processing_charge":"No","keyword":["Publication analysis","Bibliography","Open Access"],"date_published":"2018-01-16T00:00:00Z","doi":"10.15479/AT:ISTA:94","citation":{"short":"M. Villányi, (2018).","mla":"Villányi, Márton. Taylor&Francis Austrian Publications 2013-2017. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:94.","chicago":"Villányi, Márton. “Taylor&Francis Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:94.","ama":"Villányi M. Taylor&Francis Austrian Publications 2013-2017. 2018. doi:10.15479/AT:ISTA:94","apa":"Villányi, M. (2018). Taylor&Francis Austrian Publications 2013-2017. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:94","ieee":"M. Villányi, “Taylor&Francis Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018.","ista":"Villányi M. 2018. Taylor&Francis Austrian Publications 2013-2017, Institute of Science and Technology Austria, 10.15479/AT:ISTA:94."},"tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"oa":1},{"publisher":"Institute of Science and Technology Austria","department":[{"_id":"E-Lib"}],"ddc":["020"],"status":"public","title":"Springer Austrian Publications 2013-2016","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"5581","year":"2018","file":[{"access_level":"open_access","file_name":"IST-2018-93-v1+1_Springer_Austrian_Publications_2013-2016.zip","file_size":304018,"content_type":"application/zip","creator":"system","relation":"main_file","file_id":"5646","checksum":"7cc8274975162a99ea4681dc344b927d","date_updated":"2020-07-14T12:47:06Z","date_created":"2018-12-12T13:05:20Z"}],"oa_version":"Submitted Version","date_updated":"2024-02-21T13:43:53Z","date_created":"2018-12-12T12:31:39Z","related_material":{"record":[{"status":"public","relation":"part_of_dissertation","id":"278"}]},"author":[{"last_name":"Villányi","first_name":"Márton","orcid":"0000-0001-8126-0426","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","full_name":"Villányi, Márton"}],"type":"research_data","datarep_id":"93","abstract":[{"lang":"ger","text":"Data on Austrian open access publication output at Springer from 2013-2016 including data analysis."}],"file_date_updated":"2020-07-14T12:47:06Z","citation":{"chicago":"Villányi, Márton. “Springer Austrian Publications 2013-2016.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:93.","mla":"Villányi, Márton. Springer Austrian Publications 2013-2016. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:93.","short":"M. Villányi, (2018).","ista":"Villányi M. 2018. Springer Austrian Publications 2013-2016, Institute of Science and Technology Austria, 10.15479/AT:ISTA:93.","ieee":"M. Villányi, “Springer Austrian Publications 2013-2016.” Institute of Science and Technology Austria, 2018.","apa":"Villányi, M. (2018). Springer Austrian Publications 2013-2016. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:93","ama":"Villányi M. Springer Austrian Publications 2013-2016. 2018. doi:10.15479/AT:ISTA:93"},"tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"oa":1,"doi":"10.15479/AT:ISTA:93","date_published":"2018-01-16T00:00:00Z","keyword":["Publication analysis","Bibliography","Open Access"],"has_accepted_license":"1","article_processing_charge":"No","month":"01","day":"16"},{"tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"oa":1,"citation":{"mla":"Villányi, Márton. SAGE Austrian Publications 2013-2017. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:92.","short":"M. Villányi, (2018).","chicago":"Villányi, Márton. “SAGE Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:92.","ama":"Villányi M. SAGE Austrian Publications 2013-2017. 2018. doi:10.15479/AT:ISTA:92","ista":"Villányi M. 2018. SAGE Austrian Publications 2013-2017, Institute of Science and Technology Austria, 10.15479/AT:ISTA:92.","ieee":"M. Villányi, “SAGE Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018.","apa":"Villányi, M. (2018). SAGE Austrian Publications 2013-2017. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:92"},"doi":"10.15479/AT:ISTA:92","date_published":"2018-01-16T00:00:00Z","keyword":["Publication analysis","Bibliography","Open Access"],"has_accepted_license":"1","article_processing_charge":"No","month":"01","day":"16","publisher":"Institute of Science and Technology Austria","department":[{"_id":"E-Lib"}],"title":"SAGE Austrian Publications 2013-2017","status":"public","ddc":["020"],"year":"2018","_id":"5580","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","file":[{"date_updated":"2020-07-14T12:47:06Z","date_created":"2018-12-12T13:03:01Z","checksum":"1ed83efc33aab2fc5dbe5ffe95de5c2b","file_id":"5619","relation":"main_file","creator":"system","content_type":"application/zip","file_size":724017,"file_name":"IST-2018-92-v1+1_SAGE_Austrian_Publications_2013-2017.zip","access_level":"open_access"}],"oa_version":"Submitted Version","date_updated":"2024-02-21T13:44:07Z","date_created":"2018-12-12T12:31:38Z","related_material":{"record":[{"relation":"part_of_dissertation","status":"public","id":"278"}]},"author":[{"id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8126-0426","first_name":"Márton","last_name":"Villányi","full_name":"Villányi, Márton"}],"type":"research_data","datarep_id":"92","abstract":[{"text":"Data on Austrian open access publication output at SAGE from 2013-2017 including data analysis.","lang":"ger"}],"file_date_updated":"2020-07-14T12:47:06Z"},{"month":"01","day":"16","has_accepted_license":"1","article_processing_charge":"No","keyword":["Publication analysis","Bibliography","Open Access"],"doi":"10.15479/AT:ISTA:91","date_published":"2018-01-16T00:00:00Z","tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"oa":1,"citation":{"ieee":"M. Villányi, “RSC Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018.","apa":"Villányi, M. (2018). RSC Austrian Publications 2013-2017. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:91","ista":"Villányi M. 2018. RSC Austrian Publications 2013-2017, Institute of Science and Technology Austria, 10.15479/AT:ISTA:91.","ama":"Villányi M. RSC Austrian Publications 2013-2017. 2018. doi:10.15479/AT:ISTA:91","chicago":"Villányi, Márton. “RSC Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:91.","short":"M. Villányi, (2018).","mla":"Villányi, Márton. RSC Austrian Publications 2013-2017. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:91."},"abstract":[{"lang":"eng","text":"Data on Austrian open access publication output at RSC from 2013-2017 including data analysis."}],"file_date_updated":"2020-07-14T12:47:06Z","datarep_id":"91","type":"research_data","date_updated":"2024-02-21T13:42:53Z","date_created":"2018-12-12T12:31:38Z","file":[{"relation":"main_file","file_id":"5605","checksum":"2a73efc5f94f8deb00e2b08c3dff8547","date_created":"2018-12-12T13:02:40Z","date_updated":"2020-07-14T12:47:06Z","access_level":"open_access","file_name":"IST-2018-91-v1+1_RSC_Austrian__Publications_2013-2017.zip","file_size":791408,"content_type":"application/zip","creator":"system"}],"oa_version":"Submitted Version","author":[{"full_name":"Villányi, Márton","orcid":"0000-0001-8126-0426","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","last_name":"Villányi","first_name":"Márton"}],"related_material":{"record":[{"id":"278","status":"public","relation":"part_of_dissertation"}]},"title":"RSC Austrian Publications 2013-2017","status":"public","ddc":["020"],"department":[{"_id":"E-Lib"}],"publisher":"Institute of Science and Technology Austria","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"5579","year":"2018"},{"keyword":["Publication analysis","Bibliography","Open Access"],"day":"16","month":"01","article_processing_charge":"No","has_accepted_license":"1","tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"oa":1,"citation":{"chicago":"Villányi, Márton. “Data Check T&F Scopus vs. FWF.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:88.","short":"M. Villányi, (2018).","mla":"Villányi, Márton. Data Check T&F Scopus vs. FWF. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:88.","apa":"Villányi, M. (2018). Data Check T&F Scopus vs. FWF. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:88","ieee":"M. Villányi, “Data Check T&F Scopus vs. FWF.” Institute of Science and Technology Austria, 2018.","ista":"Villányi M. 2018. Data Check T&F Scopus vs. FWF, Institute of Science and Technology Austria, 10.15479/AT:ISTA:88.","ama":"Villányi M. Data Check T&F Scopus vs. FWF. 2018. doi:10.15479/AT:ISTA:88"},"doi":"10.15479/AT:ISTA:88","date_published":"2018-01-16T00:00:00Z","datarep_id":"88","type":"research_data","file_date_updated":"2020-07-14T12:47:05Z","abstract":[{"lang":"ger","text":"Comparison of Scopus' and FWF's data on Austrian publication output at T&F."}],"ddc":["020"],"status":"public","title":"Data Check T&F Scopus vs. FWF","publisher":"Institute of Science and Technology Austria","department":[{"_id":"E-Lib"}],"_id":"5576","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2018","date_updated":"2024-02-21T13:43:10Z","date_created":"2018-12-12T12:31:37Z","oa_version":"Submitted Version","file":[{"date_updated":"2020-07-14T12:47:05Z","date_created":"2018-12-12T13:02:32Z","checksum":"a887246c2b41b98df90ccbc1d62b4487","file_id":"5598","relation":"main_file","creator":"system","content_type":"application/zip","file_size":741195,"file_name":"IST-2018-88-v1+1_Data_Check_T_F_Scopus_vs._FWF.zip","access_level":"open_access"}],"author":[{"id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-8126-0426","first_name":"Márton","last_name":"Villányi","full_name":"Villányi, Márton"}],"related_material":{"record":[{"relation":"part_of_dissertation","status":"public","id":"278"}]}},{"datarep_id":"87","type":"research_data","abstract":[{"text":"Comparison of Scopus' and FWF's data on Austrian publication output at RSC. ","lang":"ger"}],"file_date_updated":"2020-07-14T12:47:05Z","status":"public","title":"Data Check RSC Scopus vs. FWF","ddc":["020"],"department":[{"_id":"E-Lib"}],"publisher":"Institute of Science and Technology Austria","_id":"5575","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","year":"2018","date_updated":"2024-02-21T13:43:25Z","date_created":"2018-12-12T12:31:37Z","file":[{"file_id":"5610","relation":"main_file","date_created":"2018-12-12T13:02:44Z","date_updated":"2020-07-14T12:47:05Z","checksum":"563cc5266c0bac354007873c92be777b","file_name":"IST-2018-87-v1+1_Data_Check_RSC_Scopus_vs._FWF.zip","access_level":"open_access","creator":"system","file_size":277078,"content_type":"application/zip"}],"oa_version":"Submitted Version","author":[{"full_name":"Villányi, Márton","orcid":"0000-0001-8126-0426","id":"3FFCCD3A-F248-11E8-B48F-1D18A9856A87","last_name":"Villányi","first_name":"Márton"}],"related_material":{"record":[{"id":"278","status":"public","relation":"part_of_dissertation"}]},"keyword":["Publication analysis","Bibliography","Open Access"],"day":"16","month":"01","has_accepted_license":"1","article_processing_charge":"No","citation":{"ama":"Villányi M. Data Check RSC Scopus vs. FWF. 2018. doi:10.15479/AT:ISTA:87","ista":"Villányi M. 2018. Data Check RSC Scopus vs. FWF, Institute of Science and Technology Austria, 10.15479/AT:ISTA:87.","apa":"Villányi, M. (2018). Data Check RSC Scopus vs. FWF. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:87","ieee":"M. Villányi, “Data Check RSC Scopus vs. FWF.” Institute of Science and Technology Austria, 2018.","mla":"Villányi, Márton. Data Check RSC Scopus vs. FWF. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:87.","short":"M. Villányi, (2018).","chicago":"Villányi, Márton. “Data Check RSC Scopus vs. FWF.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:87."},"tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"oa":1,"date_published":"2018-01-16T00:00:00Z","doi":"10.15479/AT:ISTA:87"},{"oa_version":"Published Version","file":[{"relation":"main_file","file_id":"5974","checksum":"3026f94d235219e15514505fdbadf34e","date_created":"2019-02-13T11:07:15Z","date_updated":"2020-07-14T12:45:53Z","access_level":"open_access","file_name":"2018_Plos_Botella_Soler.pdf","file_size":3460786,"content_type":"application/pdf","creator":"dernst"}],"user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","_id":"292","ddc":["570"],"title":"Nonlinear decoding of a complex movie from the mammalian retina","status":"public","intvolume":" 14","abstract":[{"text":"Retina is a paradigmatic system for studying sensory encoding: the transformation of light into spiking activity of ganglion cells. The inverse problem, where stimulus is reconstructed from spikes, has received less attention, especially for complex stimuli that should be reconstructed “pixel-by-pixel”. We recorded around a hundred neurons from a dense patch in a rat retina and decoded movies of multiple small randomly-moving discs. We constructed nonlinear (kernelized and neural network) decoders that improved significantly over linear results. An important contribution to this was the ability of nonlinear decoders to reliably separate between neural responses driven by locally fluctuating light signals, and responses at locally constant light driven by spontaneous-like activity. This improvement crucially depended on the precise, non-Poisson temporal structure of individual spike trains, which originated in the spike-history dependence of neural responses. We propose a general principle by which downstream circuitry could discriminate between spontaneous and stimulus-driven activity based solely on higher-order statistical structure in the incoming spike trains.","lang":"eng"}],"issue":"5","type":"journal_article","date_published":"2018-05-10T00:00:00Z","publication":"PLoS Computational Biology","citation":{"mla":"Botella Soler, Vicente, et al. “Nonlinear Decoding of a Complex Movie from the Mammalian Retina.” PLoS Computational Biology, vol. 14, no. 5, e1006057, Public Library of Science, 2018, doi:10.1371/journal.pcbi.1006057.","short":"V. Botella Soler, S. Deny, G.S. Martius, O. Marre, G. Tkačik, PLoS Computational Biology 14 (2018).","chicago":"Botella Soler, Vicente, Stephane Deny, Georg S Martius, Olivier Marre, and Gašper Tkačik. “Nonlinear Decoding of a Complex Movie from the Mammalian Retina.” PLoS Computational Biology. Public Library of Science, 2018. https://doi.org/10.1371/journal.pcbi.1006057.","ama":"Botella Soler V, Deny S, Martius GS, Marre O, Tkačik G. Nonlinear decoding of a complex movie from the mammalian retina. PLoS Computational Biology. 2018;14(5). doi:10.1371/journal.pcbi.1006057","ista":"Botella Soler V, Deny S, Martius GS, Marre O, Tkačik G. 2018. Nonlinear decoding of a complex movie from the mammalian retina. PLoS Computational Biology. 14(5), e1006057.","apa":"Botella Soler, V., Deny, S., Martius, G. S., Marre, O., & Tkačik, G. (2018). Nonlinear decoding of a complex movie from the mammalian retina. PLoS Computational Biology. Public Library of Science. https://doi.org/10.1371/journal.pcbi.1006057","ieee":"V. Botella Soler, S. Deny, G. S. Martius, O. Marre, and G. Tkačik, “Nonlinear decoding of a complex movie from the mammalian retina,” PLoS Computational Biology, vol. 14, no. 5. Public Library of Science, 2018."},"article_type":"original","day":"10","has_accepted_license":"1","article_processing_charge":"Yes","scopus_import":"1","author":[{"last_name":"Botella Soler","first_name":"Vicent","orcid":"0000-0002-8790-1914","id":"421234E8-F248-11E8-B48F-1D18A9856A87","full_name":"Botella Soler, Vicent"},{"full_name":"Deny, Stephane","first_name":"Stephane","last_name":"Deny"},{"first_name":"Georg S","last_name":"Martius","full_name":"Martius, Georg S"},{"full_name":"Marre, Olivier","first_name":"Olivier","last_name":"Marre"},{"full_name":"Tkacik, Gasper","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-6699-1455","first_name":"Gasper","last_name":"Tkacik"}],"related_material":{"link":[{"url":"https://ist.ac.at/en/news/video-of-moving-discs-reconstructed-from-rat-retinal-neuron-signals/","relation":"press_release","description":"News on IST Homepage"}],"record":[{"status":"public","relation":"research_data","id":"5584"}]},"date_created":"2018-12-11T11:45:39Z","date_updated":"2024-02-21T13:45:25Z","volume":14,"year":"2018","publication_status":"published","publisher":"Public Library of Science","department":[{"_id":"GaTk"}],"file_date_updated":"2020-07-14T12:45:53Z","ec_funded":1,"license":"https://creativecommons.org/licenses/by/4.0/","article_number":"e1006057","doi":"10.1371/journal.pcbi.1006057","language":[{"iso":"eng"}],"external_id":{"isi":["000434012100002"]},"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"oa":1,"isi":1,"quality_controlled":"1","project":[{"name":"Human Brain Project Specific Grant Agreement 1 (HBP SGA 1)","call_identifier":"H2020","_id":"25CBA828-B435-11E9-9278-68D0E5697425","grant_number":"720270"},{"call_identifier":"FWF","name":"Sensitivity to higher-order statistics in natural scenes","_id":"254D1A94-B435-11E9-9278-68D0E5697425","grant_number":"P 25651-N26"}],"month":"05"},{"has_accepted_license":"1","article_processing_charge":"Yes (in subscription journal)","day":"06","scopus_import":"1","date_published":"2018-04-06T00:00:00Z","citation":{"ista":"Nikolic N, Bergmiller T, Vandervelde A, Albanese T, Gelens L, Moll I. 2018. Autoregulation of mazEF expression underlies growth heterogeneity in bacterial populations. Nucleic Acids Research. 46(6), 2918–2931.","apa":"Nikolic, N., Bergmiller, T., Vandervelde, A., Albanese, T., Gelens, L., & Moll, I. (2018). Autoregulation of mazEF expression underlies growth heterogeneity in bacterial populations. Nucleic Acids Research. Oxford University Press. https://doi.org/10.1093/nar/gky079","ieee":"N. Nikolic, T. Bergmiller, A. Vandervelde, T. Albanese, L. Gelens, and I. Moll, “Autoregulation of mazEF expression underlies growth heterogeneity in bacterial populations,” Nucleic Acids Research, vol. 46, no. 6. Oxford University Press, pp. 2918–2931, 2018.","ama":"Nikolic N, Bergmiller T, Vandervelde A, Albanese T, Gelens L, Moll I. Autoregulation of mazEF expression underlies growth heterogeneity in bacterial populations. Nucleic Acids Research. 2018;46(6):2918-2931. doi:10.1093/nar/gky079","chicago":"Nikolic, Nela, Tobias Bergmiller, Alexandra Vandervelde, Tanino Albanese, Lendert Gelens, and Isabella Moll. “Autoregulation of MazEF Expression Underlies Growth Heterogeneity in Bacterial Populations.” Nucleic Acids Research. Oxford University Press, 2018. https://doi.org/10.1093/nar/gky079.","mla":"Nikolic, Nela, et al. “Autoregulation of MazEF Expression Underlies Growth Heterogeneity in Bacterial Populations.” Nucleic Acids Research, vol. 46, no. 6, Oxford University Press, 2018, pp. 2918–31, doi:10.1093/nar/gky079.","short":"N. Nikolic, T. Bergmiller, A. Vandervelde, T. Albanese, L. Gelens, I. Moll, Nucleic Acids Research 46 (2018) 2918–2931."},"publication":"Nucleic Acids Research","page":"2918-2931","issue":"6","abstract":[{"lang":"eng","text":"The MazF toxin sequence-specifically cleaves single-stranded RNA upon various stressful conditions, and it is activated as a part of the mazEF toxin–antitoxin module in Escherichia coli. Although autoregulation of mazEF expression through the MazE antitoxin-dependent transcriptional repression has been biochemically characterized, less is known about post-transcriptional autoregulation, as well as how both of these autoregulatory features affect growth of single cells during conditions that promote MazF production. Here, we demonstrate post-transcriptional autoregulation of mazF expression dynamics by MazF cleaving its own transcript. Single-cell analyses of bacterial populations during ectopic MazF production indicated that two-level autoregulation of mazEF expression influences cell-to-cell growth rate heterogeneity. The increase in growth rate heterogeneity is governed by the MazE antitoxin, and tuned by the MazF-dependent mazF mRNA cleavage. Also, both autoregulatory features grant rapid exit from the stress caused by mazF overexpression. Time-lapse microscopy revealed that MazF-mediated cleavage of mazF mRNA leads to increased temporal variability in length of individual cells during ectopic mazF overexpression, as explained by a stochastic model indicating that mazEF mRNA cleavage underlies temporal fluctuations in MazF levels during stress."}],"type":"journal_article","pubrep_id":"971","file":[{"date_updated":"2020-07-14T12:46:27Z","date_created":"2018-12-12T10:15:30Z","checksum":"3ff4f545c27e11a4cd20ccb30778793e","file_id":"5151","relation":"main_file","creator":"system","content_type":"application/pdf","file_size":5027978,"file_name":"IST-2018-971-v1+1_2018_Nikoloc_Autoregulation_of.pdf","access_level":"open_access"}],"oa_version":"Published Version","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","_id":"438","intvolume":" 46","title":"Autoregulation of mazEF expression underlies growth heterogeneity in bacterial populations","status":"public","ddc":["576"],"month":"04","doi":"10.1093/nar/gky079","language":[{"iso":"eng"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000429009500021"]},"project":[{"call_identifier":"FWF","name":"FWF Open Access Fund","_id":"3AC91DDA-15DF-11EA-824D-93A3E7B544D1"}],"quality_controlled":"1","isi":1,"file_date_updated":"2020-07-14T12:46:27Z","related_material":{"record":[{"relation":"popular_science","status":"public","id":"5569"}]},"author":[{"full_name":"Nikolic, Nela","id":"42D9CABC-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-9068-6090","first_name":"Nela","last_name":"Nikolic"},{"last_name":"Bergmiller","first_name":"Tobias","orcid":"0000-0001-5396-4346","id":"2C471CFA-F248-11E8-B48F-1D18A9856A87","full_name":"Bergmiller, Tobias"},{"first_name":"Alexandra","last_name":"Vandervelde","full_name":"Vandervelde, Alexandra"},{"full_name":"Albanese, Tanino","last_name":"Albanese","first_name":"Tanino"},{"full_name":"Gelens, Lendert","first_name":"Lendert","last_name":"Gelens"},{"last_name":"Moll","first_name":"Isabella","full_name":"Moll, Isabella"}],"volume":46,"date_created":"2018-12-11T11:46:29Z","date_updated":"2024-02-21T13:44:45Z","year":"2018","publisher":"Oxford University Press","department":[{"_id":"CaGu"}],"publication_status":"published"},{"article_processing_charge":"No","has_accepted_license":"1","day":"13","scopus_import":"1","date_published":"2018-08-13T00:00:00Z","citation":{"ista":"Picard MAL, Cosseau C, Ferré S, Quack T, Grevelding C, Couté Y, Vicoso B. 2018. Evolution of gene dosage on the Z-chromosome of schistosome parasites. eLife. 7, e35684.","apa":"Picard, M. A. L., Cosseau, C., Ferré, S., Quack, T., Grevelding, C., Couté, Y., & Vicoso, B. (2018). Evolution of gene dosage on the Z-chromosome of schistosome parasites. ELife. eLife Sciences Publications. https://doi.org/10.7554/eLife.35684","ieee":"M. A. L. Picard et al., “Evolution of gene dosage on the Z-chromosome of schistosome parasites,” eLife, vol. 7. eLife Sciences Publications, 2018.","ama":"Picard MAL, Cosseau C, Ferré S, et al. Evolution of gene dosage on the Z-chromosome of schistosome parasites. eLife. 2018;7. doi:10.7554/eLife.35684","chicago":"Picard, Marion A L, Celine Cosseau, Sabrina Ferré, Thomas Quack, Christoph Grevelding, Yohann Couté, and Beatriz Vicoso. “Evolution of Gene Dosage on the Z-Chromosome of Schistosome Parasites.” ELife. eLife Sciences Publications, 2018. https://doi.org/10.7554/eLife.35684.","mla":"Picard, Marion A. L., et al. “Evolution of Gene Dosage on the Z-Chromosome of Schistosome Parasites.” ELife, vol. 7, e35684, eLife Sciences Publications, 2018, doi:10.7554/eLife.35684.","short":"M.A.L. Picard, C. Cosseau, S. Ferré, T. Quack, C. Grevelding, Y. Couté, B. Vicoso, ELife 7 (2018)."},"publication":"eLife","article_type":"original","abstract":[{"lang":"eng","text":"XY systems usually show chromosome-wide compensation of X-linked genes, while in many ZW systems, compensation is restricted to a minority of dosage-sensitive genes. Why such differences arose is still unclear. Here, we combine comparative genomics, transcriptomics and proteomics to obtain a complete overview of the evolution of gene dosage on the Z-chromosome of Schistosoma parasites. We compare the Z-chromosome gene content of African (Schistosoma mansoni and S. haematobium) and Asian (S. japonicum) schistosomes and describe lineage-specific evolutionary strata. We use these to assess gene expression evolution following sex-linkage. The resulting patterns suggest a reduction in expression of Z-linked genes in females, combined with upregulation of the Z in both sexes, in line with the first step of Ohno’s classic model of dosage compensation evolution. Quantitative proteomics suggest that post-transcriptional mechanisms do not play a major role in balancing the expression of Z-linked genes. "}],"type":"journal_article","file":[{"file_size":3158125,"content_type":"application/pdf","creator":"dernst","access_level":"open_access","file_name":"2018_eLife_Picard.pdf","checksum":"d6331d4385b1fffd6b47b45d5949d841","date_updated":"2020-07-14T12:44:43Z","date_created":"2018-12-17T11:55:05Z","relation":"main_file","file_id":"5695"}],"oa_version":"Published Version","_id":"131","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","intvolume":" 7","title":"Evolution of gene dosage on the Z-chromosome of schistosome parasites","ddc":["570"],"status":"public","month":"08","doi":"10.7554/eLife.35684","language":[{"iso":"eng"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000441388200001"]},"project":[{"name":"Sex chromosome evolution under male- and female- heterogamety","call_identifier":"FWF","_id":"250ED89C-B435-11E9-9278-68D0E5697425","grant_number":"P28842-B22"}],"isi":1,"quality_controlled":"1","publist_id":"7792","file_date_updated":"2020-07-14T12:44:43Z","article_number":"e35684","related_material":{"record":[{"id":"5586","status":"public","relation":"popular_science"}]},"author":[{"full_name":"Picard, Marion A","last_name":"Picard","first_name":"Marion A","orcid":"0000-0002-8101-2518","id":"2C921A7A-F248-11E8-B48F-1D18A9856A87"},{"last_name":"Cosseau","first_name":"Celine","full_name":"Cosseau, Celine"},{"last_name":"Ferré","first_name":"Sabrina","full_name":"Ferré, Sabrina"},{"last_name":"Quack","first_name":"Thomas","full_name":"Quack, Thomas"},{"first_name":"Christoph","last_name":"Grevelding","full_name":"Grevelding, Christoph"},{"full_name":"Couté, Yohann","last_name":"Couté","first_name":"Yohann"},{"full_name":"Vicoso, Beatriz","orcid":"0000-0002-4579-8306","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","last_name":"Vicoso","first_name":"Beatriz"}],"volume":7,"date_created":"2018-12-11T11:44:47Z","date_updated":"2024-02-21T13:45:12Z","acknowledgement":"We are grateful to Lu Dabing (Soochow University, Suzhou, China) for providing Schistosoma japonicum samples, to Ariana Macon (IST Austria) and Georgette Stovall (JLU Giessen) for technical assistance, to IT support at IST Austria for providing optimal environment to bioinformatic analyses, and to the Vicoso lab for comments on the manuscript.","year":"2018","department":[{"_id":"BeVi"}],"publisher":"eLife Sciences Publications","publication_status":"published"},{"author":[{"last_name":"Deny","first_name":"Stephane","full_name":"Deny, Stephane"},{"first_name":"Olivier","last_name":"Marre","full_name":"Marre, Olivier"},{"last_name":"Botella-Soler","first_name":"Vicente","full_name":"Botella-Soler, Vicente"},{"full_name":"Martius, Georg S","id":"3A276B68-F248-11E8-B48F-1D18A9856A87","first_name":"Georg S","last_name":"Martius"},{"orcid":"0000-0002-6699-1455","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87","last_name":"Tkacik","first_name":"Gasper","full_name":"Tkacik, Gasper"}],"related_material":{"record":[{"status":"public","relation":"used_in_publication","id":"292"}]},"date_updated":"2024-02-21T13:45:26Z","date_created":"2018-12-12T12:31:39Z","file":[{"file_id":"5590","relation":"main_file","date_created":"2018-12-12T13:02:24Z","date_updated":"2020-07-14T12:47:07Z","checksum":"6808748837b9afbbbabc2a356ca2b88a","file_name":"IST-2018-98-v1+1_BBalls_area2_tile2_20x20.mat","access_level":"open_access","creator":"system","file_size":1142543971,"content_type":"application/octet-stream"},{"file_name":"IST-2018-98-v1+2_ExperimentStructure.pdf","access_level":"open_access","file_size":702336,"content_type":"application/pdf","creator":"system","relation":"main_file","file_id":"5591","date_updated":"2020-07-14T12:47:07Z","date_created":"2018-12-12T13:02:25Z","checksum":"d6d6cd07743038fe3a12352983fcf9dd"},{"content_type":"application/octet-stream","file_size":432,"creator":"system","access_level":"open_access","file_name":"IST-2018-98-v1+3_GoodLocations_area2_20x20.mat","checksum":"0c9cfb4dab35bb3dc25a04395600b1c8","date_updated":"2020-07-14T12:47:07Z","date_created":"2018-12-12T13:02:26Z","relation":"main_file","file_id":"5592"},{"checksum":"2a83b011012e21e934b4596285b1a183","date_updated":"2020-07-14T12:47:07Z","date_created":"2018-12-12T13:02:26Z","file_id":"5593","relation":"main_file","creator":"system","content_type":"text/plain","file_size":986,"access_level":"open_access","file_name":"IST-2018-98-v1+4_README.txt"}],"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"5584","year":"2018","ddc":["570"],"title":"Nonlinear decoding of a complex movie from the mammalian retina","status":"public","publisher":"Institute of Science and Technology Austria","department":[{"_id":"ChLa"},{"_id":"GaTk"}],"file_date_updated":"2020-07-14T12:47:07Z","abstract":[{"text":"This package contains data for the publication \"Nonlinear decoding of a complex movie from the mammalian retina\" by Deny S. et al, PLOS Comput Biol (2018). \r\n\r\nThe data consists of\r\n(i) 91 spike sorted, isolated rat retinal ganglion cells that pass stability and quality criteria, recorded on the multi-electrode array, in response to the presentation of the complex movie with many randomly moving dark discs. The responses are represented as 648000 x 91 binary matrix, where the first index indicates the timebin of duration 12.5 ms, and the second index the neural identity. The matrix entry is 0/1 if the neuron didn't/did spike in the particular time bin.\r\n(ii) README file and a graphical illustration of the structure of the experiment, specifying how the 648000 timebins are split into epochs where 1, 2, 4, or 10 discs were displayed, and which stimulus segments are exact repeats or unique ball trajectories.\r\n(iii) a 648000 x 400 matrix of luminance traces for each of the 20 x 20 positions (\"sites\") in the movie frame, with time that is locked to the recorded raster. The luminance traces are produced as described in the manuscript by filtering the raw disc movie with a small gaussian spatial kernel. ","lang":"eng"}],"datarep_id":"98","type":"research_data","date_published":"2018-03-29T00:00:00Z","doi":"10.15479/AT:ISTA:98","citation":{"short":"S. Deny, O. Marre, V. Botella-Soler, G.S. Martius, G. Tkačik, (2018).","mla":"Deny, Stephane, et al. Nonlinear Decoding of a Complex Movie from the Mammalian Retina. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:98.","chicago":"Deny, Stephane, Olivier Marre, Vicente Botella-Soler, Georg S Martius, and Gašper Tkačik. “Nonlinear Decoding of a Complex Movie from the Mammalian Retina.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:98.","ama":"Deny S, Marre O, Botella-Soler V, Martius GS, Tkačik G. Nonlinear decoding of a complex movie from the mammalian retina. 2018. doi:10.15479/AT:ISTA:98","ieee":"S. Deny, O. Marre, V. Botella-Soler, G. S. Martius, and G. Tkačik, “Nonlinear decoding of a complex movie from the mammalian retina.” Institute of Science and Technology Austria, 2018.","apa":"Deny, S., Marre, O., Botella-Soler, V., Martius, G. S., & Tkačik, G. (2018). Nonlinear decoding of a complex movie from the mammalian retina. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:98","ista":"Deny S, Marre O, Botella-Soler V, Martius GS, Tkačik G. 2018. Nonlinear decoding of a complex movie from the mammalian retina, Institute of Science and Technology Austria, 10.15479/AT:ISTA:98."},"tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"oa":1,"project":[{"grant_number":"P 25651-N26","_id":"254D1A94-B435-11E9-9278-68D0E5697425","call_identifier":"FWF","name":"Sensitivity to higher-order statistics in natural scenes"}],"day":"29","month":"03","article_processing_charge":"No","has_accepted_license":"1","keyword":["retina","decoding","regression","neural networks","complex stimulus"]},{"abstract":[{"text":"Pedigree and sibship reconstruction are important methods in quantifying relationships and fitness of individuals in natural populations. Current methods employ a Markov chain-based algorithm to explore plausible possible pedigrees iteratively. This provides accurate results, but is time-consuming. Here, we develop a method to infer sibship and paternity relationships from half-sibling arrays of known maternity using hierarchical clustering. Given 50 or more unlinked SNP markers and empirically derived error rates, the method performs as well as the widely used package Colony, but is faster by two orders of magnitude. Using simulations, we show that the method performs well across contrasting mating scenarios, even when samples are large. We then apply the method to open-pollinated arrays of the snapdragon Antirrhinum majus and find evidence for a high degree of multiple mating. Although we focus on diploid SNP data, the method does not depend on marker type and as such has broad applications in nonmodel systems. ","lang":"eng"}],"issue":"5","type":"journal_article","oa_version":"None","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","_id":"286","status":"public","title":"Efficient inference of paternity and sibship inference given known maternity via hierarchical clustering","intvolume":" 18","day":"01","article_processing_charge":"No","scopus_import":"1","date_published":"2018-09-01T00:00:00Z","publication":"Molecular Ecology Resources","citation":{"chicago":"Ellis, Thomas, David Field, and Nicholas H Barton. “Efficient Inference of Paternity and Sibship Inference given Known Maternity via Hierarchical Clustering.” Molecular Ecology Resources. Wiley, 2018. https://doi.org/10.1111/1755-0998.12782.","short":"T. Ellis, D. Field, N.H. Barton, Molecular Ecology Resources 18 (2018) 988–999.","mla":"Ellis, Thomas, et al. “Efficient Inference of Paternity and Sibship Inference given Known Maternity via Hierarchical Clustering.” Molecular Ecology Resources, vol. 18, no. 5, Wiley, 2018, pp. 988–99, doi:10.1111/1755-0998.12782.","apa":"Ellis, T., Field, D., & Barton, N. H. (2018). Efficient inference of paternity and sibship inference given known maternity via hierarchical clustering. Molecular Ecology Resources. Wiley. https://doi.org/10.1111/1755-0998.12782","ieee":"T. Ellis, D. Field, and N. H. Barton, “Efficient inference of paternity and sibship inference given known maternity via hierarchical clustering,” Molecular Ecology Resources, vol. 18, no. 5. Wiley, pp. 988–999, 2018.","ista":"Ellis T, Field D, Barton NH. 2018. Efficient inference of paternity and sibship inference given known maternity via hierarchical clustering. Molecular Ecology Resources. 18(5), 988–999.","ama":"Ellis T, Field D, Barton NH. Efficient inference of paternity and sibship inference given known maternity via hierarchical clustering. Molecular Ecology Resources. 2018;18(5):988-999. doi:10.1111/1755-0998.12782"},"page":"988 - 999","ec_funded":1,"author":[{"full_name":"Ellis, Thomas","first_name":"Thomas","last_name":"Ellis","id":"3153D6D4-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8511-0254"},{"last_name":"Field","first_name":"David","orcid":"0000-0002-4014-8478","id":"419049E2-F248-11E8-B48F-1D18A9856A87","full_name":"Field, David"},{"id":"4880FE40-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-8548-5240","first_name":"Nicholas H","last_name":"Barton","full_name":"Barton, Nicholas H"}],"related_material":{"record":[{"relation":"popular_science","status":"public","id":"5583"}]},"date_created":"2018-12-11T11:45:37Z","date_updated":"2024-02-21T13:45:00Z","volume":18,"acknowledgement":"ERC, Grant/Award Number: 250152","year":"2018","publication_status":"published","department":[{"_id":"NiBa"}],"publisher":"Wiley","month":"09","doi":"10.1111/1755-0998.12782","language":[{"iso":"eng"}],"external_id":{"isi":["000441753000007"]},"quality_controlled":"1","isi":1,"project":[{"_id":"25B07788-B435-11E9-9278-68D0E5697425","grant_number":"250152","name":"Limits to selection in biology and in evolutionary computation","call_identifier":"FP7"}]},{"date_published":"2018-07-24T00:00:00Z","doi":"10.15479/AT:ISTA:109","tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"oa":1,"citation":{"apa":"Vicoso, B. (2018). Input files and scripts from “Evolution of gene dosage on the Z-chromosome of schistosome parasites” by Picard M.A.L., et al (2018). Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:109","ieee":"B. Vicoso, “Input files and scripts from ‘Evolution of gene dosage on the Z-chromosome of schistosome parasites’ by Picard M.A.L., et al (2018).” Institute of Science and Technology Austria, 2018.","ista":"Vicoso B. 2018. Input files and scripts from ‘Evolution of gene dosage on the Z-chromosome of schistosome parasites’ by Picard M.A.L., et al (2018), Institute of Science and Technology Austria, 10.15479/AT:ISTA:109.","ama":"Vicoso B. Input files and scripts from “Evolution of gene dosage on the Z-chromosome of schistosome parasites” by Picard M.A.L., et al (2018). 2018. doi:10.15479/AT:ISTA:109","chicago":"Vicoso, Beatriz. “Input Files and Scripts from ‘Evolution of Gene Dosage on the Z-Chromosome of Schistosome Parasites’ by Picard M.A.L., et Al (2018).” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:109.","short":"B. Vicoso, (2018).","mla":"Vicoso, Beatriz. Input Files and Scripts from “Evolution of Gene Dosage on the Z-Chromosome of Schistosome Parasites” by Picard M.A.L., et Al (2018). Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:109."},"project":[{"_id":"250ED89C-B435-11E9-9278-68D0E5697425","grant_number":"P28842-B22","call_identifier":"FWF","name":"Sex chromosome evolution under male- and female- heterogamety"}],"article_processing_charge":"No","has_accepted_license":"1","month":"07","day":"24","keyword":["schistosoma","Z-chromosome","gene expression"],"contributor":[{"last_name":"Picard","first_name":"Marion A","orcid":"0000-0002-8101-2518","id":"2C921A7A-F248-11E8-B48F-1D18A9856A87"}],"related_material":{"record":[{"relation":"research_paper","status":"public","id":"131"}]},"author":[{"last_name":"Vicoso","first_name":"Beatriz","orcid":"0000-0002-4579-8306","id":"49E1C5C6-F248-11E8-B48F-1D18A9856A87","full_name":"Vicoso, Beatriz"}],"file":[{"file_id":"5601","relation":"main_file","date_created":"2018-12-12T13:02:35Z","date_updated":"2020-07-14T12:47:08Z","checksum":"e60b484bd6f55c08eb66a189cb72c923","file_name":"IST-2018-109-v1+1_SupplementaryMethods.zip","access_level":"open_access","creator":"system","content_type":"application/zip","file_size":11918144}],"oa_version":"Published Version","date_updated":"2024-02-21T13:45:12Z","date_created":"2018-12-12T12:31:40Z","_id":"5586","year":"2018","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","department":[{"_id":"BeVi"}],"publisher":"Institute of Science and Technology Austria","ddc":["570"],"title":"Input files and scripts from \"Evolution of gene dosage on the Z-chromosome of schistosome parasites\" by Picard M.A.L., et al (2018)","status":"public","abstract":[{"text":"Input files and scripts from \"Evolution of gene dosage on the Z-chromosome of schistosome parasites\" by Picard M.A.L., et al (2018).","lang":"eng"}],"file_date_updated":"2020-07-14T12:47:08Z","type":"research_data","datarep_id":"109"},{"abstract":[{"text":"Data and scripts are provided in support of the manuscript \"Efficient inference of paternity and sibship inference given known maternity via hierarchical clustering\", and the associated Python package FAPS, available from www.github.com/ellisztamas/faps.\r\n\r\nSimulation scripts cover:\r\n1. Performance under different mating scenarios.\r\n2. Comparison with Colony2.\r\n3. Effect of changing the number of Monte Carlo draws\r\n\r\nThe final script covers the analysis of half-sib arrays from wild-pollinated seed in an Antirrhinum majus hybrid zone.","lang":"eng"}],"file_date_updated":"2020-07-14T12:47:07Z","datarep_id":"95","type":"research_data","author":[{"orcid":"0000-0002-8511-0254","id":"3153D6D4-F248-11E8-B48F-1D18A9856A87","last_name":"Ellis","first_name":"Thomas","full_name":"Ellis, Thomas"}],"related_material":{"record":[{"id":"286","relation":"research_paper","status":"public"}]},"contributor":[{"id":"419049E2-F248-11E8-B48F-1D18A9856A87","last_name":"Field","first_name":"David"},{"last_name":"Barton","first_name":"Nicholas H","id":"4880FE40-F248-11E8-B48F-1D18A9856A87"}],"date_created":"2018-12-12T12:31:39Z","date_updated":"2024-02-21T13:45:01Z","file":[{"checksum":"fc6aab51439f2622ba6df8632e66fd4f","date_created":"2018-12-12T13:02:41Z","date_updated":"2020-07-14T12:47:07Z","file_id":"5606","relation":"main_file","creator":"system","file_size":122048,"content_type":"text/csv","access_level":"open_access","file_name":"IST-2018-95-v1+1_amajus_GPS_2012.csv"},{"file_id":"5607","relation":"main_file","date_updated":"2020-07-14T12:47:07Z","date_created":"2018-12-12T13:02:42Z","checksum":"92347586ae4f8a6eb7c04354797bf314","file_name":"IST-2018-95-v1+2_offspring_SNPs_2012.csv","access_level":"open_access","creator":"system","file_size":235980,"content_type":"text/csv"},{"relation":"main_file","file_id":"5608","checksum":"3300813645a54e6c5c39f41917228354","date_updated":"2020-07-14T12:47:07Z","date_created":"2018-12-12T13:02:43Z","access_level":"open_access","file_name":"IST-2018-95-v1+3_parents_SNPs_2012.csv","file_size":311712,"content_type":"text/csv","creator":"system"},{"date_updated":"2020-07-14T12:47:07Z","date_created":"2018-12-12T13:02:44Z","checksum":"e739fc473567fd8f39438b445fc46147","file_id":"5609","relation":"main_file","creator":"system","content_type":"application/zip","file_size":342090,"file_name":"IST-2018-95-v1+4_faps_scripts.zip","access_level":"open_access"}],"oa_version":"Published Version","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","_id":"5583","year":"2018","status":"public","title":"Data and Python scripts supporting Python package FAPS","publisher":"Institute of Science and Technology Austria","department":[{"_id":"NiBa"}],"day":"12","month":"02","has_accepted_license":"1","article_processing_charge":"No","date_published":"2018-02-12T00:00:00Z","doi":"10.15479/AT:ISTA:95","oa":1,"tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"citation":{"ama":"Ellis T. Data and Python scripts supporting Python package FAPS. 2018. doi:10.15479/AT:ISTA:95","apa":"Ellis, T. (2018). Data and Python scripts supporting Python package FAPS. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:95","ieee":"T. Ellis, “Data and Python scripts supporting Python package FAPS.” Institute of Science and Technology Austria, 2018.","ista":"Ellis T. 2018. Data and Python scripts supporting Python package FAPS, Institute of Science and Technology Austria, 10.15479/AT:ISTA:95.","short":"T. Ellis, (2018).","mla":"Ellis, Thomas. Data and Python Scripts Supporting Python Package FAPS. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:95.","chicago":"Ellis, Thomas. “Data and Python Scripts Supporting Python Package FAPS.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:95."}},{"file_date_updated":"2020-07-14T12:47:04Z","abstract":[{"text":"Nela Nikolic, Tobias Bergmiller, Alexandra Vandervelde, Tanino G. Albanese, Lendert Gelens, and Isabella Moll (2018)\r\n“Autoregulation of mazEF expression underlies growth heterogeneity in bacterial populations” Nucleic Acids Research, doi: 10.15479/AT:ISTA:74;\r\nmicroscopy experiments by Tobias Bergmiller; image and data analysis by Nela Nikolic.","lang":"eng"}],"publist_id":"7385","datarep_id":"74","type":"research_data","date_created":"2018-12-12T12:31:35Z","date_updated":"2024-02-21T13:44:45Z","file":[{"relation":"main_file","file_id":"5637","checksum":"61ebb92213cfffeba3ddbaff984b81af","date_created":"2018-12-12T13:04:39Z","date_updated":"2020-07-14T12:47:04Z","access_level":"open_access","file_name":"IST-2018-74-v1+2_15-11-05.zip","content_type":"application/zip","file_size":3558703796,"creator":"system"},{"checksum":"bf26649af310ef6892d68576515cde6d","date_updated":"2020-07-14T12:47:04Z","date_created":"2018-12-12T13:04:55Z","relation":"main_file","file_id":"5638","file_size":1830422606,"content_type":"application/zip","creator":"system","access_level":"open_access","file_name":"IST-2018-74-v1+3_15-07-31.zip"},{"content_type":"application/zip","file_size":2140849248,"creator":"system","file_name":"IST-2018-74-v1+4_Images_for_analysis.zip","access_level":"open_access","date_created":"2018-12-12T13:05:11Z","date_updated":"2020-07-14T12:47:04Z","checksum":"8e46eedce06f22acb2be1a9b9d3f56bd","relation":"main_file","file_id":"5639"}],"oa_version":"Published Version","author":[{"full_name":"Bergmiller, Tobias","first_name":"Tobias","last_name":"Bergmiller","id":"2C471CFA-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0001-5396-4346"},{"last_name":"Nikolic","first_name":"Nela","orcid":"0000-0001-9068-6090","id":"42D9CABC-F248-11E8-B48F-1D18A9856A87","full_name":"Nikolic, Nela"}],"related_material":{"record":[{"id":"438","relation":"research_paper","status":"public"}]},"status":"public","ddc":["579"],"title":"Time-lapse microscopy data","publisher":"Institute of Science and Technology Austria","department":[{"_id":"CaGu"}],"_id":"5569","year":"2018","user_id":"2DF688A6-F248-11E8-B48F-1D18A9856A87","month":"02","day":"07","has_accepted_license":"1","article_processing_charge":"No","keyword":["microscopy","microfluidics"],"date_published":"2018-02-07T00:00:00Z","doi":"10.15479/AT:ISTA:74","tmp":{"short":"CC0 (1.0)","image":"/images/cc_0.png","legal_code_url":"https://creativecommons.org/publicdomain/zero/1.0/legalcode","name":"Creative Commons Public Domain Dedication (CC0 1.0)"},"citation":{"chicago":"Bergmiller, Tobias, and Nela Nikolic. “Time-Lapse Microscopy Data.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:74.","short":"T. Bergmiller, N. Nikolic, (2018).","mla":"Bergmiller, Tobias, and Nela Nikolic. Time-Lapse Microscopy Data. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:74.","ieee":"T. Bergmiller and N. Nikolic, “Time-lapse microscopy data.” Institute of Science and Technology Austria, 2018.","apa":"Bergmiller, T., & Nikolic, N. (2018). Time-lapse microscopy data. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:74","ista":"Bergmiller T, Nikolic N. 2018. Time-lapse microscopy data, Institute of Science and Technology Austria, 10.15479/AT:ISTA:74.","ama":"Bergmiller T, Nikolic N. Time-lapse microscopy data. 2018. doi:10.15479/AT:ISTA:74"},"oa":1},{"day":"30","article_processing_charge":"No","has_accepted_license":"1","scopus_import":"1","date_published":"2018-07-30T00:00:00Z","publication":"Nature Communications","citation":{"ama":"De Martino D, Mc AA, Bergmiller T, Guet CC, Tkačik G. Statistical mechanics for metabolic networks during steady state growth. Nature Communications. 2018;9(1). doi:10.1038/s41467-018-05417-9","apa":"De Martino, D., Mc, A. A., Bergmiller, T., Guet, C. C., & Tkačik, G. (2018). Statistical mechanics for metabolic networks during steady state growth. Nature Communications. Springer Nature. https://doi.org/10.1038/s41467-018-05417-9","ieee":"D. De Martino, A. A. Mc, T. Bergmiller, C. C. Guet, and G. Tkačik, “Statistical mechanics for metabolic networks during steady state growth,” Nature Communications, vol. 9, no. 1. Springer Nature, 2018.","ista":"De Martino D, Mc AA, Bergmiller T, Guet CC, Tkačik G. 2018. Statistical mechanics for metabolic networks during steady state growth. Nature Communications. 9(1), 2988.","short":"D. De Martino, A.A. Mc, T. Bergmiller, C.C. Guet, G. Tkačik, Nature Communications 9 (2018).","mla":"De Martino, Daniele, et al. “Statistical Mechanics for Metabolic Networks during Steady State Growth.” Nature Communications, vol. 9, no. 1, 2988, Springer Nature, 2018, doi:10.1038/s41467-018-05417-9.","chicago":"De Martino, Daniele, Andersson Anna Mc, Tobias Bergmiller, Calin C Guet, and Gašper Tkačik. “Statistical Mechanics for Metabolic Networks during Steady State Growth.” Nature Communications. Springer Nature, 2018. https://doi.org/10.1038/s41467-018-05417-9."},"abstract":[{"text":"Which properties of metabolic networks can be derived solely from stoichiometry? Predictive results have been obtained by flux balance analysis (FBA), by postulating that cells set metabolic fluxes to maximize growth rate. Here we consider a generalization of FBA to single-cell level using maximum entropy modeling, which we extend and test experimentally. Specifically, we define for Escherichia coli metabolism a flux distribution that yields the experimental growth rate: the model, containing FBA as a limit, provides a better match to measured fluxes and it makes a wide range of predictions: on flux variability, regulation, and correlations; on the relative importance of stoichiometry vs. optimization; on scaling relations for growth rate distributions. We validate the latter here with single-cell data at different sub-inhibitory antibiotic concentrations. The model quantifies growth optimization as emerging from the interplay of competitive dynamics in the population and regulation of metabolism at the level of single cells.","lang":"eng"}],"issue":"1","type":"journal_article","oa_version":"Published Version","file":[{"file_name":"2018_NatureComm_DeMartino.pdf","access_level":"open_access","creator":"dernst","content_type":"application/pdf","file_size":1043205,"file_id":"5728","relation":"main_file","date_created":"2018-12-17T16:44:28Z","date_updated":"2020-07-14T12:45:06Z","checksum":"3ba7ab27b27723c7dcf633e8fc1f8f18"}],"status":"public","title":"Statistical mechanics for metabolic networks during steady state growth","ddc":["570"],"intvolume":" 9","_id":"161","user_id":"c635000d-4b10-11ee-a964-aac5a93f6ac1","month":"07","language":[{"iso":"eng"}],"doi":"10.1038/s41467-018-05417-9","isi":1,"quality_controlled":"1","project":[{"_id":"254E9036-B435-11E9-9278-68D0E5697425","grant_number":"P28844-B27","call_identifier":"FWF","name":"Biophysics of information processing in gene regulation"},{"grant_number":"291734","_id":"25681D80-B435-11E9-9278-68D0E5697425","name":"International IST Postdoc Fellowship Programme","call_identifier":"FP7"}],"oa":1,"tmp":{"name":"Creative Commons Attribution 4.0 International Public License (CC-BY 4.0)","legal_code_url":"https://creativecommons.org/licenses/by/4.0/legalcode","short":"CC BY (4.0)","image":"/images/cc_by.png"},"external_id":{"isi":["000440149300021"]},"file_date_updated":"2020-07-14T12:45:06Z","ec_funded":1,"publist_id":"7760","article_number":"2988","date_updated":"2024-02-21T13:45:39Z","date_created":"2018-12-11T11:44:57Z","volume":9,"author":[{"full_name":"De Martino, Daniele","id":"3FF5848A-F248-11E8-B48F-1D18A9856A87","orcid":"0000-0002-5214-4706","first_name":"Daniele","last_name":"De Martino"},{"first_name":"Andersson Anna","last_name":"Mc","full_name":"Mc, Andersson Anna"},{"orcid":"0000-0001-5396-4346","id":"2C471CFA-F248-11E8-B48F-1D18A9856A87","last_name":"Bergmiller","first_name":"Tobias","full_name":"Bergmiller, Tobias"},{"full_name":"Guet, Calin C","orcid":"0000-0001-6220-2052","id":"47F8433E-F248-11E8-B48F-1D18A9856A87","last_name":"Guet","first_name":"Calin C"},{"full_name":"Tkacik, Gasper","last_name":"Tkacik","first_name":"Gasper","orcid":"0000-0002-6699-1455","id":"3D494DCA-F248-11E8-B48F-1D18A9856A87"}],"related_material":{"record":[{"status":"public","relation":"popular_science","id":"5587"}]},"publication_status":"published","department":[{"_id":"GaTk"},{"_id":"CaGu"}],"publisher":"Springer Nature","year":"2018"}]