--- _id: '7154' article_processing_charge: No author: - first_name: Ruslan full_name: Guseinov, Ruslan id: 3AB45EE2-F248-11E8-B48F-1D18A9856A87 last_name: Guseinov orcid: 0000-0001-9819-5077 citation: ama: Guseinov R. Supplementary data for “Programming temporal morphing of self-actuated shells.” 2019. doi:10.15479/AT:ISTA:7154 apa: Guseinov, R. (2019). Supplementary data for “Programming temporal morphing of self-actuated shells.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:7154 chicago: Guseinov, Ruslan. “Supplementary Data for ‘Programming Temporal Morphing of Self-Actuated Shells.’” Institute of Science and Technology Austria, 2019. https://doi.org/10.15479/AT:ISTA:7154. ieee: R. Guseinov, “Supplementary data for ‘Programming temporal morphing of self-actuated shells.’” Institute of Science and Technology Austria, 2019. ista: Guseinov R. 2019. Supplementary data for ‘Programming temporal morphing of self-actuated shells’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:7154. mla: Guseinov, Ruslan. Supplementary Data for “Programming Temporal Morphing of Self-Actuated Shells.” Institute of Science and Technology Austria, 2019, doi:10.15479/AT:ISTA:7154. short: R. Guseinov, (2019). contributor: - first_name: Ruslan id: 3AB45EE2-F248-11E8-B48F-1D18A9856A87 last_name: Guseinov orcid: 0000-0001-9819-5077 - first_name: Connor last_name: McMahan - first_name: Jesus id: 2DC83906-F248-11E8-B48F-1D18A9856A87 last_name: Perez Rodriguez - first_name: Chiara last_name: Daraio - first_name: Bernd id: 49876194-F248-11E8-B48F-1D18A9856A87 last_name: Bickel orcid: 0000-0001-6511-9385 date_created: 2019-12-09T07:52:46Z date_published: 2019-12-06T00:00:00Z date_updated: 2024-02-21T12:45:03Z day: '06' ddc: - '000' department: - _id: BeBi doi: 10.15479/AT:ISTA:7154 ec_funded: 1 file: - access_level: open_access checksum: 155133e6e188e85b3c0676a5e70b9341 content_type: application/x-zip-compressed creator: dernst date_created: 2019-12-09T07:52:17Z date_updated: 2020-07-14T12:47:50Z file_id: '7155' file_name: temporal_morphing_supp_data.zip file_size: 65307107 relation: main_file file_date_updated: 2020-07-14T12:47:50Z has_accepted_license: '1' license: https://creativecommons.org/publicdomain/zero/1.0/ month: '12' oa: 1 oa_version: Published Version project: - _id: 260C2330-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '754411' name: ISTplus - Postdoctoral Fellowships publisher: Institute of Science and Technology Austria related_material: record: - id: '8433' relation: used_in_publication status: deleted - id: '7262' relation: used_in_publication status: public status: public title: Supplementary data for "Programming temporal morphing of self-actuated shells" tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2019' ... --- _id: '6060' article_processing_charge: No author: - first_name: Beatriz full_name: Vicoso, Beatriz id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87 last_name: Vicoso orcid: 0000-0002-4579-8306 citation: ama: Vicoso B. Supplementary data for “Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome” (Huylman, Toups et al., 2019). . 2019. doi:10.15479/AT:ISTA:6060 apa: Vicoso, B. (2019). Supplementary data for “Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome” (Huylman, Toups et al., 2019). . Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:6060 chicago: Vicoso, Beatriz. “Supplementary Data for ‘Sex-Biased Gene Expression and Dosage Compensation on the Artemia Franciscana Z-Chromosome’ (Huylman, Toups et Al., 2019). .” Institute of Science and Technology Austria, 2019. https://doi.org/10.15479/AT:ISTA:6060. ieee: B. Vicoso, “Supplementary data for ‘Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome’ (Huylman, Toups et al., 2019). .” Institute of Science and Technology Austria, 2019. ista: Vicoso B. 2019. Supplementary data for ‘Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome’ (Huylman, Toups et al., 2019). , Institute of Science and Technology Austria, 10.15479/AT:ISTA:6060. mla: Vicoso, Beatriz. Supplementary Data for “Sex-Biased Gene Expression and Dosage Compensation on the Artemia Franciscana Z-Chromosome” (Huylman, Toups et Al., 2019). . Institute of Science and Technology Austria, 2019, doi:10.15479/AT:ISTA:6060. short: B. Vicoso, (2019). date_created: 2019-02-28T10:55:15Z date_published: 2019-02-28T00:00:00Z date_updated: 2024-02-21T12:45:42Z day: '28' department: - _id: BeVi doi: 10.15479/AT:ISTA:6060 file: - access_level: open_access checksum: a338a622d728af0e3199cb07e6dd64d3 content_type: application/zip creator: bvicoso date_created: 2019-02-28T10:54:27Z date_updated: 2020-07-14T12:47:17Z file_id: '6061' file_name: SupData.zip file_size: 36646050 relation: main_file file_date_updated: 2020-07-14T12:47:17Z has_accepted_license: '1' month: '02' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria related_material: record: - id: '6418' relation: research_paper status: public status: public title: 'Supplementary data for "Sex-biased gene expression and dosage compensation on the Artemia franciscana Z-chromosome" (Huylman, Toups et al., 2019). ' type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2019' ... --- _id: '6074' abstract: - lang: eng text: "This dataset contains the supplementary data for the research paper \"Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition\".\r\n\r\nThe contained files have the following content:\r\n'Supplementary Figures.pdf'\r\n\tAdditional figures (as referenced in the paper).\r\n'Supplementary Table 1. Statistics.xlsx'\r\n\tDetails on statistical tests performed in the paper.\r\n'Supplementary Table 2. Differentially expressed gene analysis.xlsx'\r\n\tResults for the differential gene expression analysis for embryonic (E9.5; analysis with edgeR) and in vitro (ESCs, EBs, NPCs; analysis with DESeq2) samples.\r\n'Supplementary Table 3. Gene Ontology (GO) term enrichment analysis.xlsx'\r\n\tResults for the GO term enrichment analysis for differentially expressed genes in embryonic (GO E9.5) and in vitro (GO ESC, GO EBs, GO NPCs) samples. Differentially expressed genes for in vitro samples were split into upregulated and downregulated genes (up/down) and the analysis was performed on each subset (e.g. GO ESC up / GO ESC down).\r\n'Supplementary Table 4. Differentially expressed gene analysis for CFC samples.xlsx'\r\n\tResults for the differential gene expression analysis for samples from adult mice before (HC - Homecage) and 1h and 3h after contextual fear conditioning (1h and 3h, respectively). Each sheet shows the results for a different comparison. Sheets 1-3 show results for comparisons between timepoints for wild type (WT) samples only and sheets 4-6 for the same comparisons in mutant (Het) samples. Sheets 7-9 show results for comparisons between genotypes at each time point and sheet 10 contains the results for the analysis of differential expression trajectories between wild type and mutant.\r\n'Supplementary Table 5. Cluster identification.xlsx'\r\n\tResults for k-means clustering of genes by expression. Sheet 1 shows clustering of just the genes with significantly different expression trajectories between genotypes. Sheet 2 shows clustering of all genes that are significantly differentially expressed in any of the comparisons (includes also genes with same trajectories).\r\n'Supplementary Table 6. GO term cluster analysis.xlsx'\r\n\tResults for the GO term enrichment analysis and EWCE analysis for enrichment of cell type specific genes for each cluster identified by clustering genes with different expression trajectories (see Table S5, sheet 1).\r\n'Supplementary Table 7. Setd5 mass spectrometry results.xlsx'\r\n\tResults showing proteins interacting with Setd5 as identified by mass spectrometry. Sheet 1 shows protein protein interaction data generated from these results (combined with data from the STRING database. Sheet 2 shows the results of the statistical analysis with limma.\r\n'Supplementary Table 8. PolII ChIP-seq analysis.xlsx'\r\n\tResults for the Chip-Seq analysis for binding of RNA polymerase II (PolII). Sheet 1 shows results for differential binding of PolII at the transcription start site (TSS) between genotypes and sheets 2+3 show the corresponding GO enrichment analysis for these differentially bound genes. Sheet 4 shows RNAseq counts for genes with increased binding of PolII at the TSS." article_processing_charge: No author: - first_name: Christoph full_name: Dotter, Christoph id: 4C66542E-F248-11E8-B48F-1D18A9856A87 last_name: Dotter orcid: 0000-0002-9033-9096 - first_name: Gaia full_name: Novarino, Gaia id: 3E57A680-F248-11E8-B48F-1D18A9856A87 last_name: Novarino orcid: 0000-0002-7673-7178 citation: ama: Dotter C, Novarino G. Supplementary data for the research paper “Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition.” 2019. doi:10.15479/AT:ISTA:6074 apa: Dotter, C., & Novarino, G. (2019). Supplementary data for the research paper “Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:6074 chicago: Dotter, Christoph, and Gaia Novarino. “Supplementary Data for the Research Paper ‘Haploinsufficiency of the Intellectual Disability Gene SETD5 Disturbs Developmental Gene Expression and Cognition.’” Institute of Science and Technology Austria, 2019. https://doi.org/10.15479/AT:ISTA:6074. ieee: C. Dotter and G. Novarino, “Supplementary data for the research paper ‘Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition.’” Institute of Science and Technology Austria, 2019. ista: Dotter C, Novarino G. 2019. Supplementary data for the research paper ‘Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:6074. mla: Dotter, Christoph, and Gaia Novarino. Supplementary Data for the Research Paper “Haploinsufficiency of the Intellectual Disability Gene SETD5 Disturbs Developmental Gene Expression and Cognition.” Institute of Science and Technology Austria, 2019, doi:10.15479/AT:ISTA:6074. short: C. Dotter, G. Novarino, (2019). date_created: 2019-03-07T13:32:35Z date_published: 2019-01-09T00:00:00Z date_updated: 2024-02-21T13:41:01Z day: '09' ddc: - '570' department: - _id: GaNo doi: 10.15479/AT:ISTA:6074 file: - access_level: open_access checksum: bc1b285edca9e98a2c63d153c79bb75b content_type: application/zip creator: dernst date_created: 2019-03-07T13:37:19Z date_updated: 2020-07-14T12:47:18Z file_id: '6084' file_name: Setd5_paper.zip file_size: 33202743 relation: supplementary_material file_date_updated: 2020-07-14T12:47:18Z has_accepted_license: '1' month: '01' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria related_material: record: - id: '3' relation: research_paper status: public status: public title: Supplementary data for the research paper "Haploinsufficiency of the intellectual disability gene SETD5 disturbs developmental gene expression and cognition" type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2019' ... --- _id: '6062' abstract: - lang: eng text: Open the files in Jupyter Notebook (reccomended https://www.anaconda.com/distribution/#download-section with Python 3.7). article_processing_charge: No author: - first_name: Michele full_name: Nardin, Michele id: 30BD0376-F248-11E8-B48F-1D18A9856A87 last_name: Nardin orcid: 0000-0001-8849-6570 citation: ama: Nardin M. Supplementary Code and Data for the paper “The Entorhinal Cognitive Map is Attracted to Goals.” 2019. doi:10.15479/AT:ISTA:6062 apa: Nardin, M. (2019). Supplementary Code and Data for the paper “The Entorhinal Cognitive Map is Attracted to Goals.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:6062 chicago: Nardin, Michele. “Supplementary Code and Data for the Paper ‘The Entorhinal Cognitive Map Is Attracted to Goals.’” Institute of Science and Technology Austria, 2019. https://doi.org/10.15479/AT:ISTA:6062. ieee: M. Nardin, “Supplementary Code and Data for the paper ‘The Entorhinal Cognitive Map is Attracted to Goals.’” Institute of Science and Technology Austria, 2019. ista: Nardin M. 2019. Supplementary Code and Data for the paper ‘The Entorhinal Cognitive Map is Attracted to Goals’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:6062. mla: Nardin, Michele. Supplementary Code and Data for the Paper “The Entorhinal Cognitive Map Is Attracted to Goals.” Institute of Science and Technology Austria, 2019, doi:10.15479/AT:ISTA:6062. short: M. Nardin, (2019). date_created: 2019-03-04T14:20:58Z date_published: 2019-03-29T00:00:00Z date_updated: 2024-02-21T12:46:04Z day: '29' department: - _id: JoCs doi: 10.15479/AT:ISTA:6062 file: - access_level: open_access checksum: 48e7b9a02939b763417733239522a236 content_type: application/zip creator: mnardin date_created: 2019-03-05T09:29:37Z date_updated: 2020-07-14T12:47:18Z file_id: '6068' file_name: Online_data.zip file_size: 37002186 relation: main_file title: Data for the paper "The Entorhinal Cognitive Map is Attracted to Goals" file_date_updated: 2020-07-14T12:47:18Z has_accepted_license: '1' license: https://creativecommons.org/licenses/by-sa/4.0/ month: '03' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria related_material: record: - id: '6194' relation: research_paper status: public status: public title: Supplementary Code and Data for the paper "The Entorhinal Cognitive Map is Attracted to Goals" tmp: image: /images/cc_by_sa.png legal_code_url: https://creativecommons.org/licenses/by-sa/4.0/legalcode name: Creative Commons Attribution-ShareAlike 4.0 International Public License (CC BY-SA 4.0) short: CC BY-SA (4.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2019' ... --- _id: '5573' abstract: - lang: eng text: Graph matching problems for large displacement optical flow of RGB-D images. article_processing_charge: No author: - first_name: Hassan full_name: Alhaija, Hassan last_name: Alhaija - first_name: Anita full_name: Sellent, Anita last_name: Sellent - first_name: Daniel full_name: Kondermann, Daniel last_name: Kondermann - first_name: Carsten full_name: Rother, Carsten last_name: Rother citation: ama: Alhaija H, Sellent A, Kondermann D, Rother C. Graph matching problems for GraphFlow – 6D Large Displacement Scene Flow. 2018. doi:10.15479/AT:ISTA:82 apa: Alhaija, H., Sellent, A., Kondermann, D., & Rother, C. (2018). Graph matching problems for GraphFlow – 6D Large Displacement Scene Flow. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:82 chicago: Alhaija, Hassan, Anita Sellent, Daniel Kondermann, and Carsten Rother. “Graph Matching Problems for GraphFlow – 6D Large Displacement Scene Flow.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:82. ieee: H. Alhaija, A. Sellent, D. Kondermann, and C. Rother, “Graph matching problems for GraphFlow – 6D Large Displacement Scene Flow.” Institute of Science and Technology Austria, 2018. ista: Alhaija H, Sellent A, Kondermann D, Rother C. 2018. Graph matching problems for GraphFlow – 6D Large Displacement Scene Flow, Institute of Science and Technology Austria, 10.15479/AT:ISTA:82. mla: Alhaija, Hassan, et al. Graph Matching Problems for GraphFlow – 6D Large Displacement Scene Flow. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:82. short: H. Alhaija, A. Sellent, D. Kondermann, C. Rother, (2018). contributor: - contributor_type: researcher first_name: Paul id: 446560C6-F248-11E8-B48F-1D18A9856A87 last_name: Swoboda datarep_id: '82' date_created: 2018-12-12T12:31:36Z date_published: 2018-01-04T00:00:00Z date_updated: 2024-02-21T13:41:17Z day: '04' ddc: - '001' department: - _id: VlKo doi: 10.15479/AT:ISTA:82 file: - access_level: open_access checksum: 53c17082848e12f3c2e1b4185b578208 content_type: application/zip creator: system date_created: 2018-12-12T13:02:34Z date_updated: 2020-07-14T12:47:05Z file_id: '5600' file_name: IST-2018-82-v1+1_GraphFlowMatchingProblems.zip file_size: 1737958 relation: main_file file_date_updated: 2020-07-14T12:47:05Z has_accepted_license: '1' keyword: - graph matching - quadratic assignment problem< month: '01' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria related_material: link: - relation: research_paper url: https://doi.org/10.1007/978-3-319-24947-6_23 status: public title: Graph matching problems for GraphFlow – 6D Large Displacement Scene Flow tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2018' ... --- _id: '5577' abstract: - lang: ger text: Data on Austrian open access publication output at Emerald from 2013-2017 including data analysis. article_processing_charge: No author: - first_name: Márton full_name: Villányi, Márton id: 3FFCCD3A-F248-11E8-B48F-1D18A9856A87 last_name: Villányi orcid: 0000-0001-8126-0426 citation: ama: Villányi M. Emerald Austrian Publications 2013-2017. 2018. doi:10.15479/AT:ISTA:89 apa: Villányi, M. (2018). Emerald Austrian Publications 2013-2017. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:89 chicago: Villányi, Márton. “Emerald Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:89. ieee: M. Villányi, “Emerald Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018. ista: Villányi M. 2018. Emerald Austrian Publications 2013-2017, Institute of Science and Technology Austria, 10.15479/AT:ISTA:89. mla: Villányi, Márton. Emerald Austrian Publications 2013-2017. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:89. short: M. Villányi, (2018). datarep_id: '89' date_created: 2018-12-12T12:31:37Z date_published: 2018-01-16T00:00:00Z date_updated: 2024-02-21T13:41:32Z day: '16' ddc: - '020' department: - _id: E-Lib doi: 10.15479/AT:ISTA:89 file: - access_level: open_access checksum: 786b599abfae6c355dee87835f414549 content_type: application/zip creator: system date_created: 2018-12-12T13:02:39Z date_updated: 2020-07-14T12:47:06Z file_id: '5604' file_name: IST-2018-89-v1+1_Emerald_Austrian_Publications_2013-2017.zip file_size: 222011 relation: main_file file_date_updated: 2020-07-14T12:47:06Z has_accepted_license: '1' keyword: - Publication analysis - Bibliography - Open Access month: '01' oa: 1 oa_version: Submitted Version publisher: Institute of Science and Technology Austria related_material: record: - id: '278' relation: part_of_dissertation status: public status: public title: Emerald Austrian Publications 2013-2017 tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2018' ... --- _id: '5578' abstract: - lang: ger text: Data on Austrian open access publication output at IOP from 2012-2015 including data analysis. article_processing_charge: No author: - first_name: Márton full_name: Villányi, Márton id: 3FFCCD3A-F248-11E8-B48F-1D18A9856A87 last_name: Villányi orcid: 0000-0001-8126-0426 citation: ama: Villányi M. IOP Austrian Publications 2012-2015. 2018. doi:10.15479/AT:ISTA:90 apa: Villányi, M. (2018). IOP Austrian Publications 2012-2015. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:90 chicago: Villányi, Márton. “IOP Austrian Publications 2012-2015.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:90. ieee: M. Villányi, “IOP Austrian Publications 2012-2015.” Institute of Science and Technology Austria, 2018. ista: Villányi M. 2018. IOP Austrian Publications 2012-2015, Institute of Science and Technology Austria, 10.15479/AT:ISTA:90. mla: Villányi, Márton. IOP Austrian Publications 2012-2015. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:90. short: M. Villányi, (2018). datarep_id: '90' date_created: 2018-12-12T12:31:38Z date_published: 2018-01-16T00:00:00Z date_updated: 2024-02-21T13:42:36Z day: '16' ddc: - '020' department: - _id: E-Lib doi: 10.15479/AT:ISTA:90 file: - access_level: open_access checksum: a4f1bf041ccd4c35912e2d595b0c2883 content_type: application/zip creator: system date_created: 2018-12-12T13:03:06Z date_updated: 2020-07-14T12:47:06Z file_id: '5624' file_name: IST-2018-90-v1+1_IOP_Austrian_Publications_2012-2015.zip file_size: 237067 relation: main_file file_date_updated: 2020-07-14T12:47:06Z has_accepted_license: '1' keyword: - Publication analysis - Bibliography - Open Access month: '01' oa: 1 oa_version: Submitted Version publisher: Institute of Science and Technology Austria related_material: record: - id: '278' relation: part_of_dissertation status: public status: public title: IOP Austrian Publications 2012-2015 tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2018' ... --- _id: '5574' abstract: - lang: ger text: 'Comparison of Scopus'' and publisher''s data on Austrian publication output at IOP. ' article_processing_charge: No author: - first_name: Márton full_name: Villányi, Márton id: 3FFCCD3A-F248-11E8-B48F-1D18A9856A87 last_name: Villányi orcid: 0000-0001-8126-0426 citation: ama: Villányi M. Data Check IOP Scopus vs. Publisher. 2018. doi:10.15479/AT:ISTA:86 apa: Villányi, M. (2018). Data Check IOP Scopus vs. Publisher. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:86 chicago: Villányi, Márton. “Data Check IOP Scopus vs. Publisher.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:86. ieee: M. Villányi, “Data Check IOP Scopus vs. Publisher.” Institute of Science and Technology Austria, 2018. ista: Villányi M. 2018. Data Check IOP Scopus vs. Publisher, Institute of Science and Technology Austria, 10.15479/AT:ISTA:86. mla: Villányi, Márton. Data Check IOP Scopus vs. Publisher. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:86. short: M. Villányi, (2018). datarep_id: '86' date_created: 2018-12-12T12:31:37Z date_published: 2018-01-16T00:00:00Z date_updated: 2024-02-21T13:42:21Z day: '16' ddc: - '020' department: - _id: E-Lib doi: 10.15479/AT:ISTA:86 file: - access_level: open_access checksum: c7a61147bd15cb4ae45878d270628c06 content_type: application/zip creator: system date_created: 2018-12-12T13:05:14Z date_updated: 2020-07-14T12:47:05Z file_id: '5642' file_name: IST-2018-86-v1+1_Data_Check_IOP_Scopus_vs._Publisher.zip file_size: 12283857 relation: main_file file_date_updated: 2020-07-14T12:47:05Z has_accepted_license: '1' keyword: - Publication analysis - Bibliography - Open Access month: '01' oa: 1 oa_version: Submitted Version publisher: Institute of Science and Technology Austria related_material: record: - id: '278' relation: part_of_dissertation status: public status: public title: Data Check IOP Scopus vs. Publisher tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2018' ... --- _id: '5588' abstract: - lang: eng text: Script to perform a simple exponential lifetime fit of a ROI on time stacks acquired with a FLIM X16 TCSPC detector (+example data) article_processing_charge: No author: - first_name: Robert full_name: Hauschild, Robert id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87 last_name: Hauschild orcid: 0000-0001-9843-3522 citation: ama: Hauschild R. Fluorescence lifetime analysis of FLIM X16 TCSPC data. 2018. doi:10.15479/AT:ISTA:0113 apa: Hauschild, R. (2018). Fluorescence lifetime analysis of FLIM X16 TCSPC data. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:0113 chicago: Hauschild, Robert. “Fluorescence Lifetime Analysis of FLIM X16 TCSPC Data.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:0113. ieee: R. Hauschild, “Fluorescence lifetime analysis of FLIM X16 TCSPC data.” Institute of Science and Technology Austria, 2018. ista: Hauschild R. 2018. Fluorescence lifetime analysis of FLIM X16 TCSPC data, Institute of Science and Technology Austria, 10.15479/AT:ISTA:0113. mla: Hauschild, Robert. Fluorescence Lifetime Analysis of FLIM X16 TCSPC Data. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:0113. short: R. Hauschild, (2018). datarep_id: '113' date_created: 2018-12-12T12:31:41Z date_published: 2018-11-07T00:00:00Z date_updated: 2024-02-21T13:44:21Z day: '07' ddc: - '570' department: - _id: Bio doi: 10.15479/AT:ISTA:0113 file: - access_level: open_access checksum: a4e160054c9114600624cf89a925fd7d content_type: application/x-zip-compressed creator: rhauschild date_created: 2019-04-11T18:15:01Z date_updated: 2020-07-14T12:47:08Z file_id: '6296' file_name: IST-2018-113-v1+1_FLIMX16TCSPCLifeTimeFit.zip file_size: 47866557 relation: main_file file_date_updated: 2020-07-14T12:47:08Z has_accepted_license: '1' keyword: - FLIM - FRET - fluorescence lifetime imaging month: '11' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria status: public title: Fluorescence lifetime analysis of FLIM X16 TCSPC data tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2018' ... --- _id: '5582' abstract: - lang: eng text: Data on Austrian open access publication output at Taylor&Francis from 2013-2017 including data analysis. article_processing_charge: No author: - first_name: Márton full_name: Villányi, Márton id: 3FFCCD3A-F248-11E8-B48F-1D18A9856A87 last_name: Villányi orcid: 0000-0001-8126-0426 citation: ama: Villányi M. Taylor&Francis Austrian Publications 2013-2017. 2018. doi:10.15479/AT:ISTA:94 apa: Villányi, M. (2018). Taylor&Francis Austrian Publications 2013-2017. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:94 chicago: Villányi, Márton. “Taylor&Francis Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:94. ieee: M. Villányi, “Taylor&Francis Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018. ista: Villányi M. 2018. Taylor&Francis Austrian Publications 2013-2017, Institute of Science and Technology Austria, 10.15479/AT:ISTA:94. mla: Villányi, Márton. Taylor&Francis Austrian Publications 2013-2017. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:94. short: M. Villányi, (2018). datarep_id: '94' date_created: 2018-12-12T12:31:39Z date_published: 2018-01-16T00:00:00Z date_updated: 2024-02-21T13:43:41Z day: '16' ddc: - '020' department: - _id: E-Lib doi: 10.15479/AT:ISTA:94 file: - access_level: open_access checksum: 3e000daf15d7eb9a47b234f3d20dd4b8 content_type: application/zip creator: system date_created: 2018-12-12T13:02:59Z date_updated: 2020-07-14T12:47:07Z file_id: '5617' file_name: IST-2018-94-v1+1_Taylor_Francis_Austrian_Publications_2013-2017.zip file_size: 2552326 relation: main_file file_date_updated: 2020-07-14T12:47:07Z has_accepted_license: '1' keyword: - Publication analysis - Bibliography - Open Access month: '01' oa: 1 oa_version: Submitted Version publisher: Institute of Science and Technology Austria related_material: record: - id: '278' relation: part_of_dissertation status: public status: public title: Taylor&Francis Austrian Publications 2013-2017 tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2018' ... --- _id: '5581' abstract: - lang: ger text: Data on Austrian open access publication output at Springer from 2013-2016 including data analysis. article_processing_charge: No author: - first_name: Márton full_name: Villányi, Márton id: 3FFCCD3A-F248-11E8-B48F-1D18A9856A87 last_name: Villányi orcid: 0000-0001-8126-0426 citation: ama: Villányi M. Springer Austrian Publications 2013-2016. 2018. doi:10.15479/AT:ISTA:93 apa: Villányi, M. (2018). Springer Austrian Publications 2013-2016. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:93 chicago: Villányi, Márton. “Springer Austrian Publications 2013-2016.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:93. ieee: M. Villányi, “Springer Austrian Publications 2013-2016.” Institute of Science and Technology Austria, 2018. ista: Villányi M. 2018. Springer Austrian Publications 2013-2016, Institute of Science and Technology Austria, 10.15479/AT:ISTA:93. mla: Villányi, Márton. Springer Austrian Publications 2013-2016. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:93. short: M. Villányi, (2018). datarep_id: '93' date_created: 2018-12-12T12:31:39Z date_published: 2018-01-16T00:00:00Z date_updated: 2024-02-21T13:43:53Z day: '16' ddc: - '020' department: - _id: E-Lib doi: 10.15479/AT:ISTA:93 file: - access_level: open_access checksum: 7cc8274975162a99ea4681dc344b927d content_type: application/zip creator: system date_created: 2018-12-12T13:05:20Z date_updated: 2020-07-14T12:47:06Z file_id: '5646' file_name: IST-2018-93-v1+1_Springer_Austrian_Publications_2013-2016.zip file_size: 304018 relation: main_file file_date_updated: 2020-07-14T12:47:06Z has_accepted_license: '1' keyword: - Publication analysis - Bibliography - Open Access month: '01' oa: 1 oa_version: Submitted Version publisher: Institute of Science and Technology Austria related_material: record: - id: '278' relation: part_of_dissertation status: public status: public title: Springer Austrian Publications 2013-2016 tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2018' ... --- _id: '5580' abstract: - lang: ger text: Data on Austrian open access publication output at SAGE from 2013-2017 including data analysis. article_processing_charge: No author: - first_name: Márton full_name: Villányi, Márton id: 3FFCCD3A-F248-11E8-B48F-1D18A9856A87 last_name: Villányi orcid: 0000-0001-8126-0426 citation: ama: Villányi M. SAGE Austrian Publications 2013-2017. 2018. doi:10.15479/AT:ISTA:92 apa: Villányi, M. (2018). SAGE Austrian Publications 2013-2017. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:92 chicago: Villányi, Márton. “SAGE Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:92. ieee: M. Villányi, “SAGE Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018. ista: Villányi M. 2018. SAGE Austrian Publications 2013-2017, Institute of Science and Technology Austria, 10.15479/AT:ISTA:92. mla: Villányi, Márton. SAGE Austrian Publications 2013-2017. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:92. short: M. Villányi, (2018). datarep_id: '92' date_created: 2018-12-12T12:31:38Z date_published: 2018-01-16T00:00:00Z date_updated: 2024-02-21T13:44:07Z day: '16' ddc: - '020' department: - _id: E-Lib doi: 10.15479/AT:ISTA:92 file: - access_level: open_access checksum: 1ed83efc33aab2fc5dbe5ffe95de5c2b content_type: application/zip creator: system date_created: 2018-12-12T13:03:01Z date_updated: 2020-07-14T12:47:06Z file_id: '5619' file_name: IST-2018-92-v1+1_SAGE_Austrian_Publications_2013-2017.zip file_size: 724017 relation: main_file file_date_updated: 2020-07-14T12:47:06Z has_accepted_license: '1' keyword: - Publication analysis - Bibliography - Open Access month: '01' oa: 1 oa_version: Submitted Version publisher: Institute of Science and Technology Austria related_material: record: - id: '278' relation: part_of_dissertation status: public status: public title: SAGE Austrian Publications 2013-2017 tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2018' ... --- _id: '5579' abstract: - lang: eng text: Data on Austrian open access publication output at RSC from 2013-2017 including data analysis. article_processing_charge: No author: - first_name: Márton full_name: Villányi, Márton id: 3FFCCD3A-F248-11E8-B48F-1D18A9856A87 last_name: Villányi orcid: 0000-0001-8126-0426 citation: ama: Villányi M. RSC Austrian Publications 2013-2017. 2018. doi:10.15479/AT:ISTA:91 apa: Villányi, M. (2018). RSC Austrian Publications 2013-2017. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:91 chicago: Villányi, Márton. “RSC Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:91. ieee: M. Villányi, “RSC Austrian Publications 2013-2017.” Institute of Science and Technology Austria, 2018. ista: Villányi M. 2018. RSC Austrian Publications 2013-2017, Institute of Science and Technology Austria, 10.15479/AT:ISTA:91. mla: Villányi, Márton. RSC Austrian Publications 2013-2017. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:91. short: M. Villányi, (2018). datarep_id: '91' date_created: 2018-12-12T12:31:38Z date_published: 2018-01-16T00:00:00Z date_updated: 2024-02-21T13:42:53Z day: '16' ddc: - '020' department: - _id: E-Lib doi: 10.15479/AT:ISTA:91 file: - access_level: open_access checksum: 2a73efc5f94f8deb00e2b08c3dff8547 content_type: application/zip creator: system date_created: 2018-12-12T13:02:40Z date_updated: 2020-07-14T12:47:06Z file_id: '5605' file_name: IST-2018-91-v1+1_RSC_Austrian__Publications_2013-2017.zip file_size: 791408 relation: main_file file_date_updated: 2020-07-14T12:47:06Z has_accepted_license: '1' keyword: - Publication analysis - Bibliography - Open Access month: '01' oa: 1 oa_version: Submitted Version publisher: Institute of Science and Technology Austria related_material: record: - id: '278' relation: part_of_dissertation status: public status: public title: RSC Austrian Publications 2013-2017 tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2018' ... --- _id: '5576' abstract: - lang: ger text: Comparison of Scopus' and FWF's data on Austrian publication output at T&F. article_processing_charge: No author: - first_name: Márton full_name: Villányi, Márton id: 3FFCCD3A-F248-11E8-B48F-1D18A9856A87 last_name: Villányi orcid: 0000-0001-8126-0426 citation: ama: Villányi M. Data Check T&F Scopus vs. FWF. 2018. doi:10.15479/AT:ISTA:88 apa: Villányi, M. (2018). Data Check T&F Scopus vs. FWF. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:88 chicago: Villányi, Márton. “Data Check T&F Scopus vs. FWF.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:88. ieee: M. Villányi, “Data Check T&F Scopus vs. FWF.” Institute of Science and Technology Austria, 2018. ista: Villányi M. 2018. Data Check T&F Scopus vs. FWF, Institute of Science and Technology Austria, 10.15479/AT:ISTA:88. mla: Villányi, Márton. Data Check T&F Scopus vs. FWF. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:88. short: M. Villányi, (2018). datarep_id: '88' date_created: 2018-12-12T12:31:37Z date_published: 2018-01-16T00:00:00Z date_updated: 2024-02-21T13:43:10Z day: '16' ddc: - '020' department: - _id: E-Lib doi: 10.15479/AT:ISTA:88 file: - access_level: open_access checksum: a887246c2b41b98df90ccbc1d62b4487 content_type: application/zip creator: system date_created: 2018-12-12T13:02:32Z date_updated: 2020-07-14T12:47:05Z file_id: '5598' file_name: IST-2018-88-v1+1_Data_Check_T_F_Scopus_vs._FWF.zip file_size: 741195 relation: main_file file_date_updated: 2020-07-14T12:47:05Z has_accepted_license: '1' keyword: - Publication analysis - Bibliography - Open Access month: '01' oa: 1 oa_version: Submitted Version publisher: Institute of Science and Technology Austria related_material: record: - id: '278' relation: part_of_dissertation status: public status: public title: Data Check T&F Scopus vs. FWF tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2018' ... --- _id: '5575' abstract: - lang: ger text: 'Comparison of Scopus'' and FWF''s data on Austrian publication output at RSC. ' article_processing_charge: No author: - first_name: Márton full_name: Villányi, Márton id: 3FFCCD3A-F248-11E8-B48F-1D18A9856A87 last_name: Villányi orcid: 0000-0001-8126-0426 citation: ama: Villányi M. Data Check RSC Scopus vs. FWF. 2018. doi:10.15479/AT:ISTA:87 apa: Villányi, M. (2018). Data Check RSC Scopus vs. FWF. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:87 chicago: Villányi, Márton. “Data Check RSC Scopus vs. FWF.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:87. ieee: M. Villányi, “Data Check RSC Scopus vs. FWF.” Institute of Science and Technology Austria, 2018. ista: Villányi M. 2018. Data Check RSC Scopus vs. FWF, Institute of Science and Technology Austria, 10.15479/AT:ISTA:87. mla: Villányi, Márton. Data Check RSC Scopus vs. FWF. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:87. short: M. Villányi, (2018). datarep_id: '87' date_created: 2018-12-12T12:31:37Z date_published: 2018-01-16T00:00:00Z date_updated: 2024-02-21T13:43:25Z day: '16' ddc: - '020' department: - _id: E-Lib doi: 10.15479/AT:ISTA:87 file: - access_level: open_access checksum: 563cc5266c0bac354007873c92be777b content_type: application/zip creator: system date_created: 2018-12-12T13:02:44Z date_updated: 2020-07-14T12:47:05Z file_id: '5610' file_name: IST-2018-87-v1+1_Data_Check_RSC_Scopus_vs._FWF.zip file_size: 277078 relation: main_file file_date_updated: 2020-07-14T12:47:05Z has_accepted_license: '1' keyword: - Publication analysis - Bibliography - Open Access month: '01' oa: 1 oa_version: Submitted Version publisher: Institute of Science and Technology Austria related_material: record: - id: '278' relation: part_of_dissertation status: public status: public title: Data Check RSC Scopus vs. FWF tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2018' ... --- _id: '5584' abstract: - lang: eng text: "This package contains data for the publication \"Nonlinear decoding of a complex movie from the mammalian retina\" by Deny S. et al, PLOS Comput Biol (2018). \r\n\r\nThe data consists of\r\n(i) 91 spike sorted, isolated rat retinal ganglion cells that pass stability and quality criteria, recorded on the multi-electrode array, in response to the presentation of the complex movie with many randomly moving dark discs. The responses are represented as 648000 x 91 binary matrix, where the first index indicates the timebin of duration 12.5 ms, and the second index the neural identity. The matrix entry is 0/1 if the neuron didn't/did spike in the particular time bin.\r\n(ii) README file and a graphical illustration of the structure of the experiment, specifying how the 648000 timebins are split into epochs where 1, 2, 4, or 10 discs were displayed, and which stimulus segments are exact repeats or unique ball trajectories.\r\n(iii) a 648000 x 400 matrix of luminance traces for each of the 20 x 20 positions (\"sites\") in the movie frame, with time that is locked to the recorded raster. The luminance traces are produced as described in the manuscript by filtering the raw disc movie with a small gaussian spatial kernel. " article_processing_charge: No author: - first_name: Stephane full_name: Deny, Stephane last_name: Deny - first_name: Olivier full_name: Marre, Olivier last_name: Marre - first_name: Vicente full_name: Botella-Soler, Vicente last_name: Botella-Soler - first_name: Georg S full_name: Martius, Georg S id: 3A276B68-F248-11E8-B48F-1D18A9856A87 last_name: Martius - first_name: Gasper full_name: Tkacik, Gasper id: 3D494DCA-F248-11E8-B48F-1D18A9856A87 last_name: Tkacik orcid: 0000-0002-6699-1455 citation: ama: Deny S, Marre O, Botella-Soler V, Martius GS, Tkačik G. Nonlinear decoding of a complex movie from the mammalian retina. 2018. doi:10.15479/AT:ISTA:98 apa: Deny, S., Marre, O., Botella-Soler, V., Martius, G. S., & Tkačik, G. (2018). Nonlinear decoding of a complex movie from the mammalian retina. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:98 chicago: Deny, Stephane, Olivier Marre, Vicente Botella-Soler, Georg S Martius, and Gašper Tkačik. “Nonlinear Decoding of a Complex Movie from the Mammalian Retina.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:98. ieee: S. Deny, O. Marre, V. Botella-Soler, G. S. Martius, and G. Tkačik, “Nonlinear decoding of a complex movie from the mammalian retina.” Institute of Science and Technology Austria, 2018. ista: Deny S, Marre O, Botella-Soler V, Martius GS, Tkačik G. 2018. Nonlinear decoding of a complex movie from the mammalian retina, Institute of Science and Technology Austria, 10.15479/AT:ISTA:98. mla: Deny, Stephane, et al. Nonlinear Decoding of a Complex Movie from the Mammalian Retina. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:98. short: S. Deny, O. Marre, V. Botella-Soler, G.S. Martius, G. Tkačik, (2018). datarep_id: '98' date_created: 2018-12-12T12:31:39Z date_published: 2018-03-29T00:00:00Z date_updated: 2024-02-21T13:45:26Z day: '29' ddc: - '570' department: - _id: ChLa - _id: GaTk doi: 10.15479/AT:ISTA:98 file: - access_level: open_access checksum: 6808748837b9afbbbabc2a356ca2b88a content_type: application/octet-stream creator: system date_created: 2018-12-12T13:02:24Z date_updated: 2020-07-14T12:47:07Z file_id: '5590' file_name: IST-2018-98-v1+1_BBalls_area2_tile2_20x20.mat file_size: 1142543971 relation: main_file - access_level: open_access checksum: d6d6cd07743038fe3a12352983fcf9dd content_type: application/pdf creator: system date_created: 2018-12-12T13:02:25Z date_updated: 2020-07-14T12:47:07Z file_id: '5591' file_name: IST-2018-98-v1+2_ExperimentStructure.pdf file_size: 702336 relation: main_file - access_level: open_access checksum: 0c9cfb4dab35bb3dc25a04395600b1c8 content_type: application/octet-stream creator: system date_created: 2018-12-12T13:02:26Z date_updated: 2020-07-14T12:47:07Z file_id: '5592' file_name: IST-2018-98-v1+3_GoodLocations_area2_20x20.mat file_size: 432 relation: main_file - access_level: open_access checksum: 2a83b011012e21e934b4596285b1a183 content_type: text/plain creator: system date_created: 2018-12-12T13:02:26Z date_updated: 2020-07-14T12:47:07Z file_id: '5593' file_name: IST-2018-98-v1+4_README.txt file_size: 986 relation: main_file file_date_updated: 2020-07-14T12:47:07Z has_accepted_license: '1' keyword: - retina - decoding - regression - neural networks - complex stimulus month: '03' oa: 1 oa_version: Published Version project: - _id: 254D1A94-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: P 25651-N26 name: Sensitivity to higher-order statistics in natural scenes publisher: Institute of Science and Technology Austria related_material: record: - id: '292' relation: used_in_publication status: public status: public title: Nonlinear decoding of a complex movie from the mammalian retina tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2018' ... --- _id: '5586' abstract: - lang: eng text: Input files and scripts from "Evolution of gene dosage on the Z-chromosome of schistosome parasites" by Picard M.A.L., et al (2018). article_processing_charge: No author: - first_name: Beatriz full_name: Vicoso, Beatriz id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87 last_name: Vicoso orcid: 0000-0002-4579-8306 citation: ama: Vicoso B. Input files and scripts from “Evolution of gene dosage on the Z-chromosome of schistosome parasites” by Picard M.A.L., et al (2018). 2018. doi:10.15479/AT:ISTA:109 apa: Vicoso, B. (2018). Input files and scripts from “Evolution of gene dosage on the Z-chromosome of schistosome parasites” by Picard M.A.L., et al (2018). Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:109 chicago: Vicoso, Beatriz. “Input Files and Scripts from ‘Evolution of Gene Dosage on the Z-Chromosome of Schistosome Parasites’ by Picard M.A.L., et Al (2018).” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:109. ieee: B. Vicoso, “Input files and scripts from ‘Evolution of gene dosage on the Z-chromosome of schistosome parasites’ by Picard M.A.L., et al (2018).” Institute of Science and Technology Austria, 2018. ista: Vicoso B. 2018. Input files and scripts from ‘Evolution of gene dosage on the Z-chromosome of schistosome parasites’ by Picard M.A.L., et al (2018), Institute of Science and Technology Austria, 10.15479/AT:ISTA:109. mla: Vicoso, Beatriz. Input Files and Scripts from “Evolution of Gene Dosage on the Z-Chromosome of Schistosome Parasites” by Picard M.A.L., et Al (2018). Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:109. short: B. Vicoso, (2018). contributor: - first_name: Marion A id: 2C921A7A-F248-11E8-B48F-1D18A9856A87 last_name: Picard orcid: 0000-0002-8101-2518 datarep_id: '109' date_created: 2018-12-12T12:31:40Z date_published: 2018-07-24T00:00:00Z date_updated: 2024-02-21T13:45:12Z day: '24' ddc: - '570' department: - _id: BeVi doi: 10.15479/AT:ISTA:109 file: - access_level: open_access checksum: e60b484bd6f55c08eb66a189cb72c923 content_type: application/zip creator: system date_created: 2018-12-12T13:02:35Z date_updated: 2020-07-14T12:47:08Z file_id: '5601' file_name: IST-2018-109-v1+1_SupplementaryMethods.zip file_size: 11918144 relation: main_file file_date_updated: 2020-07-14T12:47:08Z has_accepted_license: '1' keyword: - schistosoma - Z-chromosome - gene expression month: '07' oa: 1 oa_version: Published Version project: - _id: 250ED89C-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: P28842-B22 name: Sex chromosome evolution under male- and female- heterogamety publisher: Institute of Science and Technology Austria related_material: record: - id: '131' relation: research_paper status: public status: public title: Input files and scripts from "Evolution of gene dosage on the Z-chromosome of schistosome parasites" by Picard M.A.L., et al (2018) tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2018' ... --- _id: '5583' abstract: - lang: eng text: "Data and scripts are provided in support of the manuscript \"Efficient inference of paternity and sibship inference given known maternity via hierarchical clustering\", and the associated Python package FAPS, available from www.github.com/ellisztamas/faps.\r\n\r\nSimulation scripts cover:\r\n1. Performance under different mating scenarios.\r\n2. Comparison with Colony2.\r\n3. Effect of changing the number of Monte Carlo draws\r\n\r\nThe final script covers the analysis of half-sib arrays from wild-pollinated seed in an Antirrhinum majus hybrid zone." article_processing_charge: No author: - first_name: Thomas full_name: Ellis, Thomas id: 3153D6D4-F248-11E8-B48F-1D18A9856A87 last_name: Ellis orcid: 0000-0002-8511-0254 citation: ama: Ellis T. Data and Python scripts supporting Python package FAPS. 2018. doi:10.15479/AT:ISTA:95 apa: Ellis, T. (2018). Data and Python scripts supporting Python package FAPS. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:95 chicago: Ellis, Thomas. “Data and Python Scripts Supporting Python Package FAPS.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:95. ieee: T. Ellis, “Data and Python scripts supporting Python package FAPS.” Institute of Science and Technology Austria, 2018. ista: Ellis T. 2018. Data and Python scripts supporting Python package FAPS, Institute of Science and Technology Austria, 10.15479/AT:ISTA:95. mla: Ellis, Thomas. Data and Python Scripts Supporting Python Package FAPS. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:95. short: T. Ellis, (2018). contributor: - first_name: David id: 419049E2-F248-11E8-B48F-1D18A9856A87 last_name: Field - first_name: Nicholas H id: 4880FE40-F248-11E8-B48F-1D18A9856A87 last_name: Barton datarep_id: '95' date_created: 2018-12-12T12:31:39Z date_published: 2018-02-12T00:00:00Z date_updated: 2024-02-21T13:45:01Z day: '12' department: - _id: NiBa doi: 10.15479/AT:ISTA:95 file: - access_level: open_access checksum: fc6aab51439f2622ba6df8632e66fd4f content_type: text/csv creator: system date_created: 2018-12-12T13:02:41Z date_updated: 2020-07-14T12:47:07Z file_id: '5606' file_name: IST-2018-95-v1+1_amajus_GPS_2012.csv file_size: 122048 relation: main_file - access_level: open_access checksum: 92347586ae4f8a6eb7c04354797bf314 content_type: text/csv creator: system date_created: 2018-12-12T13:02:42Z date_updated: 2020-07-14T12:47:07Z file_id: '5607' file_name: IST-2018-95-v1+2_offspring_SNPs_2012.csv file_size: 235980 relation: main_file - access_level: open_access checksum: 3300813645a54e6c5c39f41917228354 content_type: text/csv creator: system date_created: 2018-12-12T13:02:43Z date_updated: 2020-07-14T12:47:07Z file_id: '5608' file_name: IST-2018-95-v1+3_parents_SNPs_2012.csv file_size: 311712 relation: main_file - access_level: open_access checksum: e739fc473567fd8f39438b445fc46147 content_type: application/zip creator: system date_created: 2018-12-12T13:02:44Z date_updated: 2020-07-14T12:47:07Z file_id: '5609' file_name: IST-2018-95-v1+4_faps_scripts.zip file_size: 342090 relation: main_file file_date_updated: 2020-07-14T12:47:07Z has_accepted_license: '1' month: '02' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria related_material: record: - id: '286' relation: research_paper status: public status: public title: Data and Python scripts supporting Python package FAPS tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2018' ... --- _id: '5569' abstract: - lang: eng text: "Nela Nikolic, Tobias Bergmiller, Alexandra Vandervelde, Tanino G. Albanese, Lendert Gelens, and Isabella Moll (2018)\r\n“Autoregulation of mazEF expression underlies growth heterogeneity in bacterial populations” Nucleic Acids Research, doi: 10.15479/AT:ISTA:74;\r\nmicroscopy experiments by Tobias Bergmiller; image and data analysis by Nela Nikolic." article_processing_charge: No author: - first_name: Tobias full_name: Bergmiller, Tobias id: 2C471CFA-F248-11E8-B48F-1D18A9856A87 last_name: Bergmiller orcid: 0000-0001-5396-4346 - first_name: Nela full_name: Nikolic, Nela id: 42D9CABC-F248-11E8-B48F-1D18A9856A87 last_name: Nikolic orcid: 0000-0001-9068-6090 citation: ama: Bergmiller T, Nikolic N. Time-lapse microscopy data. 2018. doi:10.15479/AT:ISTA:74 apa: Bergmiller, T., & Nikolic, N. (2018). Time-lapse microscopy data. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:74 chicago: Bergmiller, Tobias, and Nela Nikolic. “Time-Lapse Microscopy Data.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:74. ieee: T. Bergmiller and N. Nikolic, “Time-lapse microscopy data.” Institute of Science and Technology Austria, 2018. ista: Bergmiller T, Nikolic N. 2018. Time-lapse microscopy data, Institute of Science and Technology Austria, 10.15479/AT:ISTA:74. mla: Bergmiller, Tobias, and Nela Nikolic. Time-Lapse Microscopy Data. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:74. short: T. Bergmiller, N. Nikolic, (2018). datarep_id: '74' date_created: 2018-12-12T12:31:35Z date_published: 2018-02-07T00:00:00Z date_updated: 2024-02-21T13:44:45Z day: '07' ddc: - '579' department: - _id: CaGu doi: 10.15479/AT:ISTA:74 file: - access_level: open_access checksum: 61ebb92213cfffeba3ddbaff984b81af content_type: application/zip creator: system date_created: 2018-12-12T13:04:39Z date_updated: 2020-07-14T12:47:04Z file_id: '5637' file_name: IST-2018-74-v1+2_15-11-05.zip file_size: 3558703796 relation: main_file - access_level: open_access checksum: bf26649af310ef6892d68576515cde6d content_type: application/zip creator: system date_created: 2018-12-12T13:04:55Z date_updated: 2020-07-14T12:47:04Z file_id: '5638' file_name: IST-2018-74-v1+3_15-07-31.zip file_size: 1830422606 relation: main_file - access_level: open_access checksum: 8e46eedce06f22acb2be1a9b9d3f56bd content_type: application/zip creator: system date_created: 2018-12-12T13:05:11Z date_updated: 2020-07-14T12:47:04Z file_id: '5639' file_name: IST-2018-74-v1+4_Images_for_analysis.zip file_size: 2140849248 relation: main_file file_date_updated: 2020-07-14T12:47:04Z has_accepted_license: '1' keyword: - microscopy - microfluidics month: '02' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria publist_id: '7385' related_material: record: - id: '438' relation: research_paper status: public status: public title: Time-lapse microscopy data tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2018' ... --- _id: '5587' abstract: - lang: eng text: "Supporting material to the article \r\nSTATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH\r\n\r\nboundscoli.dat\r\nFlux Bounds of the E. coli catabolic core model iAF1260 in a glucose limited minimal medium. \r\n\r\npolcoli.dat\r\nMatrix enconding the polytope of the E. coli catabolic core model iAF1260 in a glucose limited minimal medium, \r\nobtained from the soichiometric matrix by standard linear algebra (reduced row echelon form).\r\n\r\nellis.dat\r\nApproximate Lowner-John ellipsoid rounding the polytope of the E. coli catabolic core model iAF1260 in a glucose limited minimal medium\r\nobtained with the Lovasz method.\r\n\r\npoint0.dat\r\nCenter of the approximate Lowner-John ellipsoid rounding the polytope of the E. coli catabolic core model iAF1260 in a glucose limited minimal medium\r\nobtained with the Lovasz method.\r\n\r\nlovasz.cpp \r\nThis c++ code file receives in input the polytope of the feasible steady states of a metabolic network, \r\n(matrix and bounds), and it gives in output an approximate Lowner-John ellipsoid rounding the polytope\r\nwith the Lovasz method \r\nNB inputs are referred by defaults to the catabolic core of the E.Coli network iAF1260. \r\nFor further details we refer to PLoS ONE 10.4 e0122670 (2015).\r\n\r\nsampleHRnew.cpp \r\nThis c++ code file receives in input the polytope of the feasible steady states of a metabolic network, \r\n(matrix and bounds), the ellipsoid rounding the polytope, a point inside and \r\nit gives in output a max entropy sampling at fixed average growth rate \r\nof the steady states by performing an Hit-and-Run Monte Carlo Markov chain.\r\nNB inputs are referred by defaults to the catabolic core of the E.Coli network iAF1260. \r\nFor further details we refer to PLoS ONE 10.4 e0122670 (2015)." article_processing_charge: No author: - first_name: Daniele full_name: De Martino, Daniele id: 3FF5848A-F248-11E8-B48F-1D18A9856A87 last_name: De Martino orcid: 0000-0002-5214-4706 - first_name: Gasper full_name: Tkacik, Gasper id: 3D494DCA-F248-11E8-B48F-1D18A9856A87 last_name: Tkacik orcid: 0000-0002-6699-1455 citation: ama: De Martino D, Tkačik G. Supporting materials “STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.” 2018. doi:10.15479/AT:ISTA:62 apa: De Martino, D., & Tkačik, G. (2018). Supporting materials “STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:62 chicago: De Martino, Daniele, and Gašper Tkačik. “Supporting Materials ‘STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.’” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:62. ieee: D. De Martino and G. Tkačik, “Supporting materials ‘STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.’” Institute of Science and Technology Austria, 2018. ista: De Martino D, Tkačik G. 2018. Supporting materials ‘STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:62. mla: De Martino, Daniele, and Gašper Tkačik. Supporting Materials “STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH.” Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:62. short: D. De Martino, G. Tkačik, (2018). datarep_id: '111' date_created: 2018-12-12T12:31:41Z date_published: 2018-09-21T00:00:00Z date_updated: 2024-02-21T13:45:39Z day: '21' ddc: - '530' department: - _id: GaTk doi: 10.15479/AT:ISTA:62 ec_funded: 1 file: - access_level: open_access checksum: 97992e3e8cf8544ec985a48971708726 content_type: application/zip creator: system date_created: 2018-12-12T13:05:13Z date_updated: 2020-07-14T12:47:08Z file_id: '5641' file_name: IST-2018-111-v1+1_CODES.zip file_size: 14376 relation: main_file file_date_updated: 2020-07-14T12:47:08Z has_accepted_license: '1' keyword: - metabolic networks - e.coli core - maximum entropy - monte carlo markov chain sampling - ellipsoidal rounding month: '09' oa: 1 oa_version: Published Version project: - _id: 25681D80-B435-11E9-9278-68D0E5697425 call_identifier: FP7 grant_number: '291734' name: International IST Postdoc Fellowship Programme - _id: 254E9036-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: P28844-B27 name: Biophysics of information processing in gene regulation publisher: Institute of Science and Technology Austria related_material: record: - id: '161' relation: research_paper status: public status: public title: Supporting materials "STATISTICAL MECHANICS FOR METABOLIC NETWORKS IN STEADY-STATE GROWTH" tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2018' ... --- _id: '5757' abstract: - lang: eng text: "File S1. Variant Calling Format file of the ingroup: 197 haploid sequences of D. melanogaster from Zambia (Africa) aligned to the D. melanogaster 5.57 reference genome.\r\n\r\nFile S2. Variant Calling Format file of the outgroup: 1 haploid sequence of D. simulans aligned to the D. melanogaster 5.57 reference genome.\r\n\r\nFile S3. Annotations of each transcript in coding regions with SNPeff: Ps (# of synonymous polymorphic sites); Pn (# of non-synonymous polymorphic sites); Ds (# of synonymous divergent sites); Dn (# of non-synonymous divergent sites); DoS; ⍺ MK . All variants were included.\r\n\r\nFile S4. Annotations of each transcript in non-coding regions with SNPeff: Ps (# of synonymous polymorphic sites); Pu (# of UTR polymorphic sites); Ds (# of synonymous divergent sites); Du (# of UTR divergent sites); DoS; ⍺ MK . All variants were included.\r\n\r\nFile S5. Annotations of each transcript in coding regions with SNPGenie: Ps (# of synonymous polymorphic sites); πs (synonymous diversity); Ss_p (total # of synonymous sites in the polymorphism data); Pn (# of non-synonymous polymorphic sites); πn (non-synonymous diversity); Sn_p (total # of non-synonymous sites in the polymorphism data); Ds (# of synonymous divergent sites); ks (synonymous evolutionary rate); Ss_d (total # of synonymous sites in the divergence data); Dn (# of non-synonymous divergent sites); kn (non-synonymous evolutionary rate); Sn_d (total # of non-\r\nsynonymous sites in the divergence data); DoS; ⍺ MK . All variants were included.\r\n\r\nFile S6. Gene expression values (RPKM summed over all transcripts) for each sample. Values were quantile-normalized across all samples.\r\n\r\nFile S7. Final dataset with all covariates, ⍺ MK , ωA MK and DoS for coding sites, excluding variants below 5% frequency.\r\n\r\nFile S8. Final dataset with all covariates, ⍺ MK , ωA MK and DoS for non-coding sites, excluding variants below 5%\r\nfrequency.\r\n\r\nFile S9. Final dataset with all covariates, ⍺ EWK , ωA EWK and deleterious SFS for coding sites obtained with the Eyre-Walker and Keightley method on binned data and using all variants." article_processing_charge: No author: - first_name: Christelle full_name: Fraisse, Christelle id: 32DF5794-F248-11E8-B48F-1D18A9856A87 last_name: Fraisse orcid: 0000-0001-8441-5075 citation: ama: Fraisse C. Supplementary Files for “Pleiotropy modulates the efficacy of selection in Drosophila melanogaster.” 2018. doi:10.15479/at:ista:/5757 apa: Fraisse, C. (2018). Supplementary Files for “Pleiotropy modulates the efficacy of selection in Drosophila melanogaster.” Institute of Science and Technology Austria. https://doi.org/10.15479/at:ista:/5757 chicago: Fraisse, Christelle. “Supplementary Files for ‘Pleiotropy Modulates the Efficacy of Selection in Drosophila Melanogaster.’” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/at:ista:/5757. ieee: C. Fraisse, “Supplementary Files for ‘Pleiotropy modulates the efficacy of selection in Drosophila melanogaster.’” Institute of Science and Technology Austria, 2018. ista: Fraisse C. 2018. Supplementary Files for ‘Pleiotropy modulates the efficacy of selection in Drosophila melanogaster’, Institute of Science and Technology Austria, 10.15479/at:ista:/5757. mla: Fraisse, Christelle. Supplementary Files for “Pleiotropy Modulates the Efficacy of Selection in Drosophila Melanogaster.” Institute of Science and Technology Austria, 2018, doi:10.15479/at:ista:/5757. short: C. Fraisse, (2018). contributor: - first_name: Christelle id: 32DF5794-F248-11E8-B48F-1D18A9856A87 last_name: Fraisse - first_name: Gemma id: 33AB266C-F248-11E8-B48F-1D18A9856A87 last_name: Puixeu Sala - first_name: Beatriz id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87 last_name: Vicoso orcid: 0000-0002-4579-8306 date_created: 2018-12-19T14:22:35Z date_published: 2018-12-19T00:00:00Z date_updated: 2024-02-21T13:59:18Z day: '19' ddc: - '576' department: - _id: BeVi - _id: NiBa doi: 10.15479/at:ista:/5757 ec_funded: 1 file: - access_level: open_access checksum: aed7ee9ca3f4dc07d8a66945f68e13cd content_type: application/zip creator: cfraisse date_created: 2018-12-19T14:19:52Z date_updated: 2020-07-14T12:47:11Z file_id: '5758' file_name: FileS1.zip file_size: 369837892 relation: main_file - access_level: open_access checksum: 3592e467b4d8206650860b612d6e12f3 content_type: application/zip creator: cfraisse date_created: 2018-12-19T14:19:49Z date_updated: 2020-07-14T12:47:11Z file_id: '5759' file_name: FileS2.zip file_size: 84856909 relation: main_file - access_level: open_access checksum: c37ac5d5437c457338afc128c1240655 content_type: text/plain creator: cfraisse date_created: 2018-12-19T14:19:49Z date_updated: 2020-07-14T12:47:11Z file_id: '5760' file_name: FileS3.txt file_size: 881133 relation: main_file - access_level: open_access checksum: 943dfd14da61817441e33e3e3cb8cdb9 content_type: text/plain creator: cfraisse date_created: 2018-12-19T14:19:49Z date_updated: 2020-07-14T12:47:11Z file_id: '5761' file_name: FileS4.txt file_size: 883742 relation: main_file - access_level: open_access checksum: 1c669b6c4690ec1bbca3e2da9f566d17 content_type: text/plain creator: cfraisse date_created: 2018-12-19T14:19:49Z date_updated: 2020-07-14T12:47:11Z file_id: '5762' file_name: FileS5.txt file_size: 2495437 relation: main_file - access_level: open_access checksum: f40f661b987ca6fb6b47f650cbbb04e6 content_type: text/plain creator: cfraisse date_created: 2018-12-19T14:19:50Z date_updated: 2020-07-14T12:47:11Z file_id: '5763' file_name: FileS6.txt file_size: 15913457 relation: main_file - access_level: open_access checksum: 25f41e5b8a075669c6c88d4c6713bf6f content_type: text/plain creator: cfraisse date_created: 2018-12-19T14:19:50Z date_updated: 2020-07-14T12:47:11Z file_id: '5764' file_name: FileS7.txt file_size: 2584120 relation: main_file - access_level: open_access checksum: f6c0bd3e63e14ddf5445bd69b43a9152 content_type: text/plain creator: cfraisse date_created: 2018-12-19T14:19:50Z date_updated: 2020-07-14T12:47:11Z file_id: '5765' file_name: FileS8.txt file_size: 2446059 relation: main_file - access_level: open_access checksum: 0fe7a58a030b11bf3b9c8ff7a7addcae content_type: text/plain creator: cfraisse date_created: 2018-12-19T14:19:50Z date_updated: 2020-07-14T12:47:11Z file_id: '5766' file_name: FileS9.txt file_size: 100737 relation: main_file file_date_updated: 2020-07-14T12:47:11Z has_accepted_license: '1' keyword: - (mal)adaptation - pleiotropy - selective constraint - evo-devo - gene expression - Drosophila melanogaster month: '12' oa: 1 oa_version: Published Version project: - _id: 25681D80-B435-11E9-9278-68D0E5697425 call_identifier: FP7 grant_number: '291734' name: International IST Postdoc Fellowship Programme publisher: Institute of Science and Technology Austria related_material: record: - id: '6089' relation: research_paper status: public status: public title: Supplementary Files for "Pleiotropy modulates the efficacy of selection in Drosophila melanogaster" type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2018' ... --- _id: '5585' abstract: - lang: eng text: Mean repression values and standard error of the mean are given for all operator mutant libraries. article_processing_charge: No author: - first_name: Claudia full_name: Igler, Claudia id: 46613666-F248-11E8-B48F-1D18A9856A87 last_name: Igler - first_name: Mato full_name: Lagator, Mato id: 345D25EC-F248-11E8-B48F-1D18A9856A87 last_name: Lagator - first_name: Gasper full_name: Tkacik, Gasper id: 3D494DCA-F248-11E8-B48F-1D18A9856A87 last_name: Tkacik orcid: 0000-0002-6699-1455 - first_name: Jonathan P full_name: Bollback, Jonathan P id: 2C6FA9CC-F248-11E8-B48F-1D18A9856A87 last_name: Bollback orcid: 0000-0002-4624-4612 - first_name: Calin C full_name: Guet, Calin C id: 47F8433E-F248-11E8-B48F-1D18A9856A87 last_name: Guet orcid: 0000-0001-6220-2052 citation: ama: Igler C, Lagator M, Tkačik G, Bollback JP, Guet CC. Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring. 2018. doi:10.15479/AT:ISTA:108 apa: Igler, C., Lagator, M., Tkačik, G., Bollback, J. P., & Guet, C. C. (2018). Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:108 chicago: Igler, Claudia, Mato Lagator, Gašper Tkačik, Jonathan P Bollback, and Calin C Guet. “Data for the Paper Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring.” Institute of Science and Technology Austria, 2018. https://doi.org/10.15479/AT:ISTA:108. ieee: C. Igler, M. Lagator, G. Tkačik, J. P. Bollback, and C. C. Guet, “Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring.” Institute of Science and Technology Austria, 2018. ista: Igler C, Lagator M, Tkačik G, Bollback JP, Guet CC. 2018. Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring, Institute of Science and Technology Austria, 10.15479/AT:ISTA:108. mla: Igler, Claudia, et al. Data for the Paper Evolutionary Potential of Transcription Factors for Gene Regulatory Rewiring. Institute of Science and Technology Austria, 2018, doi:10.15479/AT:ISTA:108. short: C. Igler, M. Lagator, G. Tkačik, J.P. Bollback, C.C. Guet, (2018). datarep_id: '108' date_created: 2018-12-12T12:31:40Z date_published: 2018-07-20T00:00:00Z date_updated: 2024-03-27T23:30:48Z day: '20' ddc: - '576' department: - _id: CaGu - _id: GaTk doi: 10.15479/AT:ISTA:108 ec_funded: 1 file: - access_level: open_access checksum: 1435781526c77413802adee0d4583cce content_type: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet creator: system date_created: 2018-12-12T13:02:45Z date_updated: 2020-07-14T12:47:07Z file_id: '5611' file_name: IST-2018-108-v1+1_data_figures.xlsx file_size: 16507 relation: main_file file_date_updated: 2020-07-14T12:47:07Z has_accepted_license: '1' month: '07' oa: 1 oa_version: Published Version project: - _id: 25681D80-B435-11E9-9278-68D0E5697425 call_identifier: FP7 grant_number: '291734' name: International IST Postdoc Fellowship Programme - _id: 2578D616-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '648440' name: Selective Barriers to Horizontal Gene Transfer - _id: 251EE76E-B435-11E9-9278-68D0E5697425 grant_number: '24573' name: Design principles underlying genetic switch architecture (DOC Fellowship) publisher: Institute of Science and Technology Austria related_material: record: - id: '67' relation: research_paper status: public - id: '6371' relation: research_paper status: public status: public title: Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2018' ... --- _id: '5562' abstract: - lang: eng text: "This data was collected as part of the study [1]. It consists of preprocessed multi-electrode array recording from 160 salamander retinal ganglion cells responding to 297 repeats of a 19 s natural movie. The data is available in two formats: (1) a .mat file containing an array with dimensions “number of repeats” x “number of neurons” x “time in a repeat”; (2) a zipped .txt file containing the same data represented as an array with dimensions “number of neurons” x “number of samples”, where the number of samples is equal to the product of the number of repeats and timebins within a repeat. The time dimension is divided into 20 ms time windows, and the array is binary indicating whether a given cell elicited at least one spike in a given time window during a particular repeat. See the reference below for details regarding collection and preprocessing:\r\n\r\n[1] Tkačik G, Marre O, Amodei D, Schneidman E, Bialek W, Berry MJ II. Searching for Collective Behavior in a Large Network of Sensory Neurons. PLoS Comput Biol. 2014;10(1):e1003408." article_processing_charge: No author: - first_name: Olivier full_name: Marre, Olivier last_name: Marre - first_name: Gasper full_name: Tkacik, Gasper id: 3D494DCA-F248-11E8-B48F-1D18A9856A87 last_name: Tkacik orcid: 0000-0002-6699-1455 - first_name: Dario full_name: Amodei, Dario last_name: Amodei - first_name: Elad full_name: Schneidman, Elad last_name: Schneidman - first_name: William full_name: Bialek, William last_name: Bialek - first_name: Michael full_name: Berry, Michael last_name: Berry citation: ama: Marre O, Tkačik G, Amodei D, Schneidman E, Bialek W, Berry M. Multi-electrode array recording from salamander retinal ganglion cells. 2017. doi:10.15479/AT:ISTA:61 apa: Marre, O., Tkačik, G., Amodei, D., Schneidman, E., Bialek, W., & Berry, M. (2017). Multi-electrode array recording from salamander retinal ganglion cells. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:61 chicago: Marre, Olivier, Gašper Tkačik, Dario Amodei, Elad Schneidman, William Bialek, and Michael Berry. “Multi-Electrode Array Recording from Salamander Retinal Ganglion Cells.” Institute of Science and Technology Austria, 2017. https://doi.org/10.15479/AT:ISTA:61. ieee: O. Marre, G. Tkačik, D. Amodei, E. Schneidman, W. Bialek, and M. Berry, “Multi-electrode array recording from salamander retinal ganglion cells.” Institute of Science and Technology Austria, 2017. ista: Marre O, Tkačik G, Amodei D, Schneidman E, Bialek W, Berry M. 2017. Multi-electrode array recording from salamander retinal ganglion cells, Institute of Science and Technology Austria, 10.15479/AT:ISTA:61. mla: Marre, Olivier, et al. Multi-Electrode Array Recording from Salamander Retinal Ganglion Cells. Institute of Science and Technology Austria, 2017, doi:10.15479/AT:ISTA:61. short: O. Marre, G. Tkačik, D. Amodei, E. Schneidman, W. Bialek, M. Berry, (2017). datarep_id: '61' date_created: 2018-12-12T12:31:33Z date_published: 2017-02-27T00:00:00Z date_updated: 2024-02-21T13:46:14Z day: '27' ddc: - '570' department: - _id: GaTk doi: 10.15479/AT:ISTA:61 file: - access_level: open_access checksum: e620eff260646f57b479a69492c8b765 content_type: application/octet-stream creator: system date_created: 2018-12-12T13:03:04Z date_updated: 2020-07-14T12:47:03Z file_id: '5622' file_name: IST-2017-61-v1+1_bint_fishmovie32_100.mat file_size: 1336936 relation: main_file - access_level: open_access checksum: de83f9b81ea0aae3cddfc3ed982e0759 content_type: application/zip creator: system date_created: 2018-12-12T13:03:05Z date_updated: 2020-07-14T12:47:03Z file_id: '5623' file_name: IST-2017-61-v1+2_bint_fishmovie32_100.zip file_size: 1897543 relation: main_file file_date_updated: 2020-07-14T12:47:03Z has_accepted_license: '1' keyword: - multi-electrode recording - retinal ganglion cells month: '02' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria related_material: record: - id: '2257' relation: research_paper status: public status: public title: Multi-electrode array recording from salamander retinal ganglion cells tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2017' ... --- _id: '5561' abstract: - lang: eng text: 'Graph matching problems as described in "Active Graph Matching for Automatic Joint Segmentation and Annotation of C. Elegans." by Kainmueller, Dagmar and Jug, Florian and Rother, Carsten and Myers, Gene, MICCAI 2014. Problems are in OpenGM2 hdf5 format (see http://hciweb2.iwr.uni-heidelberg.de/opengm/) and a custom text format used by the feature matching solver described in "Feature Correspondence via Graph Matching: Models and Global Optimization." by Lorenzo Torresani, Vladimir Kolmogorov and Carsten Rother, ECCV 2008, code at http://pub.ist.ac.at/~vnk/software/GraphMatching-v1.02.src.zip. ' acknowledgement: We thank Vladimir Kolmogorov and Stephan Saalfeld forinspiring discussions. article_processing_charge: No author: - first_name: Dagmar full_name: Kainmueller, Dagmar last_name: Kainmueller - first_name: Florian full_name: Jug, Florian last_name: Jug - first_name: Carsten full_name: Rother, Carsten last_name: Rother - first_name: Gene full_name: Meyers, Gene last_name: Meyers citation: ama: Kainmueller D, Jug F, Rother C, Meyers G. Graph matching problems for annotating C. Elegans. 2017. doi:10.15479/AT:ISTA:57 apa: Kainmueller, D., Jug, F., Rother, C., & Meyers, G. (2017). Graph matching problems for annotating C. Elegans. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:57 chicago: Kainmueller, Dagmar, Florian Jug, Carsten Rother, and Gene Meyers. “Graph Matching Problems for Annotating C. Elegans.” Institute of Science and Technology Austria, 2017. https://doi.org/10.15479/AT:ISTA:57. ieee: D. Kainmueller, F. Jug, C. Rother, and G. Meyers, “Graph matching problems for annotating C. Elegans.” Institute of Science and Technology Austria, 2017. ista: Kainmueller D, Jug F, Rother C, Meyers G. 2017. Graph matching problems for annotating C. Elegans, Institute of Science and Technology Austria, 10.15479/AT:ISTA:57. mla: Kainmueller, Dagmar, et al. Graph Matching Problems for Annotating C. Elegans. Institute of Science and Technology Austria, 2017, doi:10.15479/AT:ISTA:57. short: D. Kainmueller, F. Jug, C. Rother, G. Meyers, (2017). datarep_id: '57' date_created: 2018-12-12T12:31:32Z date_published: 2017-02-13T00:00:00Z date_updated: 2024-02-21T13:46:31Z day: '13' ddc: - '000' department: - _id: VlKo doi: 10.15479/AT:ISTA:57 file: - access_level: open_access checksum: 3dc3e1306a66028a34181ebef2923139 content_type: application/zip creator: system date_created: 2018-12-12T13:02:54Z date_updated: 2020-07-14T12:47:03Z file_id: '5614' file_name: IST-2017-57-v1+1_wormMatchingProblems.zip file_size: 327042819 relation: main_file file_date_updated: 2020-07-14T12:47:03Z has_accepted_license: '1' keyword: - graph matching - feature matching - QAP - MAP-inference month: '02' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria status: public title: Graph matching problems for annotating C. Elegans tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2017' ... --- _id: '5563' abstract: - lang: eng text: "MATLAB code and processed datasets available for reproducing the results in: \r\nLukačišin, M.*, Landon, M.*, Jajoo, R*. (2016) Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.\r\n*equal contributions" article_processing_charge: No author: - first_name: Martin full_name: Lukacisin, Martin id: 298FFE8C-F248-11E8-B48F-1D18A9856A87 last_name: Lukacisin orcid: 0000-0001-6549-4177 citation: ama: Lukacisin M. MATLAB analysis code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.” 2017. doi:10.15479/AT:ISTA:64 apa: Lukacisin, M. (2017). MATLAB analysis code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:64 chicago: Lukacisin, Martin. “MATLAB Analysis Code for ‘Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.’” Institute of Science and Technology Austria, 2017. https://doi.org/10.15479/AT:ISTA:64. ieee: M. Lukacisin, “MATLAB analysis code for ‘Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.’” Institute of Science and Technology Austria, 2017. ista: Lukacisin M. 2017. MATLAB analysis code for ‘Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:64. mla: Lukacisin, Martin. MATLAB Analysis Code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.” Institute of Science and Technology Austria, 2017, doi:10.15479/AT:ISTA:64. short: M. Lukacisin, (2017). datarep_id: '64' date_created: 2018-12-12T12:31:33Z date_published: 2017-03-20T00:00:00Z date_updated: 2024-02-21T13:46:47Z day: '20' ddc: - '571' department: - _id: ToBo doi: 10.15479/AT:ISTA:64 file: - access_level: open_access checksum: ee697f2b1ade4dc14d6ac0334dd832ab content_type: application/zip creator: system date_created: 2018-12-12T13:02:37Z date_updated: 2020-07-14T12:47:03Z file_id: '5602' file_name: IST-2016-45-v1+1_PaperCode.zip file_size: 296722548 relation: main_file file_date_updated: 2020-07-14T12:47:03Z has_accepted_license: '1' month: '03' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria status: public title: MATLAB analysis code for 'Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast' tmp: image: /images/cc_by_sa.png legal_code_url: https://creativecommons.org/licenses/by-sa/4.0/legalcode name: Creative Commons Attribution-ShareAlike 4.0 International Public License (CC BY-SA 4.0) short: CC BY-SA (4.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2017' ... --- _id: '5564' abstract: - lang: eng text: Compressed Fastq files with whole-genome sequencing data of IS-wt strain D and clones from four evolved populations (A11, C08, C10, D08). Information on this data collection is available in the Methods Section of the primary publication. article_processing_charge: No author: - first_name: Magdalena full_name: Steinrück, Magdalena id: 2C023F40-F248-11E8-B48F-1D18A9856A87 last_name: Steinrück orcid: 0000-0003-1229-9719 - first_name: Calin C full_name: Guet, Calin C id: 47F8433E-F248-11E8-B48F-1D18A9856A87 last_name: Guet orcid: 0000-0001-6220-2052 citation: ama: Steinrück M, Guet CC. Fastq files for “Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection.” 2017. doi:10.15479/AT:ISTA:65 apa: Steinrück, M., & Guet, C. C. (2017). Fastq files for “Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:65 chicago: Steinrück, Magdalena, and Calin C Guet. “Fastq Files for ‘Complex Chromosomal Neighborhood Effects Determine the Adaptive Potential of a Gene under Selection.’” Institute of Science and Technology Austria, 2017. https://doi.org/10.15479/AT:ISTA:65. ieee: M. Steinrück and C. C. Guet, “Fastq files for ‘Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection.’” Institute of Science and Technology Austria, 2017. ista: Steinrück M, Guet CC. 2017. Fastq files for ‘Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:65. mla: Steinrück, Magdalena, and Calin C. Guet. Fastq Files for “Complex Chromosomal Neighborhood Effects Determine the Adaptive Potential of a Gene under Selection.” Institute of Science and Technology Austria, 2017, doi:10.15479/AT:ISTA:65. short: M. Steinrück, C.C. Guet, (2017). datarep_id: '65' date_created: 2018-12-12T12:31:33Z date_published: 2017-04-11T00:00:00Z date_updated: 2024-02-21T13:47:28Z day: '11' ddc: - '576' department: - _id: CaGu doi: 10.15479/AT:ISTA:65 file: - access_level: open_access checksum: 31a0c01d022721073241a23d192cc37e content_type: application/zip creator: system date_created: 2018-12-12T13:03:18Z date_updated: 2020-07-14T12:47:03Z file_id: '5627' file_name: IST-2017-65-v1+1_D_anc_1.fastq.zip file_size: 1225959109 relation: main_file - access_level: open_access checksum: d8f26f83ce7e7e45436121f9c6cd9b83 content_type: application/zip creator: system date_created: 2018-12-12T13:03:30Z date_updated: 2020-07-14T12:47:03Z file_id: '5628' file_name: IST-2017-65-v1+1_D_anc_2.fastq.zip file_size: 1422656107 relation: main_file - access_level: open_access checksum: e07b99bcfe55b5f132ca03b8b48c8cbc content_type: application/zip creator: system date_created: 2018-12-12T13:03:33Z date_updated: 2020-07-14T12:47:03Z file_id: '5629' file_name: IST-2017-65-v1+2_D_A11_1.fastq.zip file_size: 565014975 relation: main_file - access_level: open_access checksum: eda86143d5f32d844b54f8530041e32b content_type: application/zip creator: system date_created: 2018-12-12T13:03:42Z date_updated: 2020-07-14T12:47:03Z file_id: '5630' file_name: IST-2017-65-v1+3_D_A11_2.fastq.zip file_size: 564490030 relation: main_file - access_level: open_access checksum: 906d44f950c1626d9b99f34fbf89cb12 content_type: application/zip creator: system date_created: 2018-12-12T13:03:46Z date_updated: 2020-07-14T12:47:03Z file_id: '5631' file_name: IST-2017-65-v1+4_D_C10_1.fastq.zip file_size: 875430169 relation: main_file - access_level: open_access checksum: 6ca14a032a79e0c787106bdf635725c9 content_type: application/zip creator: system date_created: 2018-12-12T13:03:54Z date_updated: 2020-07-14T12:47:03Z file_id: '5632' file_name: IST-2017-65-v1+6_D_C08_2.fastq.zip file_size: 638298201 relation: main_file - access_level: open_access checksum: 66ab16ddb5ba64b2e263ef746ebf2893 content_type: application/zip creator: system date_created: 2018-12-12T13:04:01Z date_updated: 2020-07-14T12:47:03Z file_id: '5633' file_name: IST-2017-65-v1+5_D_C10_2.fastq.zip file_size: 894702866 relation: main_file - access_level: open_access checksum: 82607970174f8d37773b7d3acc712195 content_type: application/zip creator: system date_created: 2018-12-12T13:04:07Z date_updated: 2020-07-14T12:47:03Z file_id: '5634' file_name: IST-2017-65-v1+7_D_C08_1.fastq.zip file_size: 623648989 relation: main_file - access_level: open_access checksum: 225c30b243268c7dda9d6f8327933252 content_type: application/zip creator: system date_created: 2018-12-12T13:04:11Z date_updated: 2020-07-14T12:47:03Z file_id: '5635' file_name: IST-2017-65-v1+8_D_D08_1.fastq.zip file_size: 259359583 relation: main_file file_date_updated: 2020-07-14T12:47:03Z has_accepted_license: '1' month: '04' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria related_material: record: - id: '704' relation: research_paper status: public status: public title: Fastq files for "Complex chromosomal neighborhood effects determine the adaptive potential of a gene under selection" tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2017' ... --- _id: '5568' abstract: - lang: eng text: Includes source codes, test cases, and example data used in the thesis Brittle Fracture Simulation with Boundary Elements for Computer Graphics. Also includes pre-built binaries of the HyENA library, but not sources - please contact the HyENA authors to obtain these sources if required (https://mech.tugraz.at/hyena) article_processing_charge: No author: - first_name: David full_name: Hahn, David id: 357A6A66-F248-11E8-B48F-1D18A9856A87 last_name: Hahn citation: ama: 'Hahn D. Source codes: Brittle fracture simulation with boundary elements for computer graphics. 2017. doi:10.15479/AT:ISTA:73' apa: 'Hahn, D. (2017). Source codes: Brittle fracture simulation with boundary elements for computer graphics. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:73' chicago: 'Hahn, David. “Source Codes: Brittle Fracture Simulation with Boundary Elements for Computer Graphics.” Institute of Science and Technology Austria, 2017. https://doi.org/10.15479/AT:ISTA:73.' ieee: 'D. Hahn, “Source codes: Brittle fracture simulation with boundary elements for computer graphics.” Institute of Science and Technology Austria, 2017.' ista: 'Hahn D. 2017. Source codes: Brittle fracture simulation with boundary elements for computer graphics, Institute of Science and Technology Austria, 10.15479/AT:ISTA:73.' mla: 'Hahn, David. Source Codes: Brittle Fracture Simulation with Boundary Elements for Computer Graphics. Institute of Science and Technology Austria, 2017, doi:10.15479/AT:ISTA:73.' short: D. Hahn, (2017). datarep_id: '73' date_created: 2018-12-12T12:31:35Z date_published: 2017-08-16T00:00:00Z date_updated: 2024-02-21T13:48:02Z day: '16' ddc: - '004' department: - _id: ChWo doi: 10.15479/AT:ISTA:73 ec_funded: 1 file: - access_level: open_access checksum: 2323a755842a3399cbc47d76545fc9a0 content_type: application/zip creator: system date_created: 2018-12-12T13:02:57Z date_updated: 2020-07-14T12:47:04Z file_id: '5615' file_name: IST-2017-73-v1+1_FractureRB_v1.1_2017_07_20_final_public.zip file_size: 199353471 relation: main_file file_date_updated: 2020-07-14T12:47:04Z has_accepted_license: '1' keyword: - Boundary elements - brittle fracture - computer graphics - fracture simulation month: '08' oa: 1 oa_version: Published Version project: - _id: 2533E772-B435-11E9-9278-68D0E5697425 call_identifier: H2020 grant_number: '638176' name: Efficient Simulation of Natural Phenomena at Extremely Large Scales publisher: Institute of Science and Technology Austria related_material: record: - id: '839' relation: research_paper status: public status: public title: 'Source codes: Brittle fracture simulation with boundary elements for computer graphics' tmp: image: /images/cc_by_sa.png legal_code_url: https://creativecommons.org/licenses/by-sa/4.0/legalcode name: Creative Commons Attribution-ShareAlike 4.0 International Public License (CC BY-SA 4.0) short: CC BY-SA (4.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2017' ... --- _id: '7163' abstract: - lang: eng text: The de novo genome assemblies generated for this study, and the associated metadata. article_processing_charge: No author: - first_name: Christelle full_name: Fraisse, Christelle id: 32DF5794-F248-11E8-B48F-1D18A9856A87 last_name: Fraisse orcid: 0000-0001-8441-5075 citation: ama: Fraisse C. Supplementary Files for “The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W.” 2017. doi:10.15479/AT:ISTA:7163 apa: Fraisse, C. (2017). Supplementary Files for “The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:7163 chicago: Fraisse, Christelle. “Supplementary Files for ‘The Deep Conservation of the Lepidoptera Z Chromosome Suggests a Non Canonical Origin of the W.’” Institute of Science and Technology Austria, 2017. https://doi.org/10.15479/AT:ISTA:7163. ieee: C. Fraisse, “Supplementary Files for ‘The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W.’” Institute of Science and Technology Austria, 2017. ista: Fraisse C. 2017. Supplementary Files for ‘The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:7163. mla: Fraisse, Christelle. Supplementary Files for “The Deep Conservation of the Lepidoptera Z Chromosome Suggests a Non Canonical Origin of the W.” Institute of Science and Technology Austria, 2017, doi:10.15479/AT:ISTA:7163. short: C. Fraisse, (2017). contributor: - first_name: Christelle id: 32DF5794-F248-11E8-B48F-1D18A9856A87 last_name: Fraisse orcid: 0000-0001-8441-5075 - first_name: Marion A L id: 2C921A7A-F248-11E8-B48F-1D18A9856A87 last_name: Picard orcid: 0000-0002-8101-2518 - first_name: Beatriz id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87 last_name: Vicoso orcid: 0000-0002-4579-8306 date_created: 2019-12-09T23:03:03Z date_published: 2017-12-01T00:00:00Z date_updated: 2024-02-21T13:47:47Z day: '01' ddc: - '576' department: - _id: BeVi - _id: NiBa doi: 10.15479/AT:ISTA:7163 file: - access_level: open_access checksum: 3cae8a2e3cbf8703399b9c483aaba7f3 content_type: application/zip creator: cfraisse date_created: 2019-12-10T08:46:46Z date_updated: 2020-07-14T12:47:50Z file_id: '7164' file_name: Vicoso_Cohridella_Ndegeerella_Tsylvina_genome_assemblies.zip file_size: 841375478 relation: main_file file_date_updated: 2020-07-14T12:47:50Z has_accepted_license: '1' license: https://creativecommons.org/licenses/by/4.0/ month: '12' oa: 1 oa_version: Published Version project: - _id: 250ED89C-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: P28842-B22 name: Sex chromosome evolution under male- and female- heterogamety publisher: Institute of Science and Technology Austria related_material: record: - id: '614' relation: research_paper status: public status: public title: Supplementary Files for "The deep conservation of the Lepidoptera Z chromosome suggests a non canonical origin of the W" tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2017' ... --- _id: '5570' abstract: - lang: eng text: Matlab script to calculate the forward migration indexes (/) from TrackMate spot-statistics files. article_processing_charge: No author: - first_name: Robert full_name: Hauschild, Robert id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87 last_name: Hauschild orcid: 0000-0001-9843-3522 citation: ama: Hauschild R. Forward migration indexes. 2017. doi:10.15479/AT:ISTA:75 apa: Hauschild, R. (2017). Forward migration indexes. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:75 chicago: Hauschild, Robert. “Forward Migration Indexes.” Institute of Science and Technology Austria, 2017. https://doi.org/10.15479/AT:ISTA:75. ieee: R. Hauschild, “Forward migration indexes.” Institute of Science and Technology Austria, 2017. ista: Hauschild R. 2017. Forward migration indexes, Institute of Science and Technology Austria, 10.15479/AT:ISTA:75. mla: Hauschild, Robert. Forward Migration Indexes. Institute of Science and Technology Austria, 2017, doi:10.15479/AT:ISTA:75. short: R. Hauschild, (2017). datarep_id: '75' date_created: 2018-12-12T12:31:35Z date_published: 2017-10-04T00:00:00Z date_updated: 2024-02-21T13:47:14Z day: '04' ddc: - '570' department: - _id: Bio doi: 10.15479/AT:ISTA:75 file: - access_level: open_access checksum: cb7a2fa622460eca6231d659ce590e32 content_type: application/octet-stream creator: system date_created: 2018-12-12T13:02:29Z date_updated: 2020-07-14T12:47:04Z file_id: '5596' file_name: IST-2017-75-v1+1_FMI.m file_size: 799 relation: main_file file_date_updated: 2020-07-14T12:47:04Z has_accepted_license: '1' keyword: - Cell migration - tracking - forward migration index - FMI month: '10' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria status: public title: Forward migration indexes tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2017' ... --- _id: '5567' abstract: - lang: eng text: Immunological synapse DC-Tcells article_processing_charge: No author: - first_name: Alexander F full_name: Leithner, Alexander F id: 3B1B77E4-F248-11E8-B48F-1D18A9856A87 last_name: Leithner orcid: 0000-0002-1073-744X citation: ama: Leithner AF. Immunological synapse DC-Tcells. 2017. doi:10.15479/AT:ISTA:71 apa: Leithner, A. F. (2017). Immunological synapse DC-Tcells. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:71 chicago: Leithner, Alexander F. “Immunological Synapse DC-Tcells.” Institute of Science and Technology Austria, 2017. https://doi.org/10.15479/AT:ISTA:71. ieee: A. F. Leithner, “Immunological synapse DC-Tcells.” Institute of Science and Technology Austria, 2017. ista: Leithner AF. 2017. Immunological synapse DC-Tcells, Institute of Science and Technology Austria, 10.15479/AT:ISTA:71. mla: Leithner, Alexander F. Immunological Synapse DC-Tcells. Institute of Science and Technology Austria, 2017, doi:10.15479/AT:ISTA:71. short: A.F. Leithner, (2017). datarep_id: '71' date_created: 2018-12-12T12:31:34Z date_published: 2017-08-09T00:00:00Z date_updated: 2024-02-21T13:47:00Z day: '09' ddc: - '570' department: - _id: MiSi doi: 10.15479/AT:ISTA:71 file: - access_level: open_access checksum: 3d6942d47d0737d064706b5728c4d8c8 content_type: video/x-msvideo creator: system date_created: 2018-12-12T13:02:47Z date_updated: 2020-07-14T12:47:04Z file_id: '5612' file_name: IST-2017-71-v1+1_Synapse_1.avi file_size: 236204020 relation: main_file - access_level: open_access checksum: 4850006c047b0147a9e85b3c2f6f0af4 content_type: video/x-msvideo creator: system date_created: 2018-12-12T13:02:51Z date_updated: 2020-07-14T12:47:04Z file_id: '5613' file_name: IST-2017-71-v1+2_Synapse_2.avi file_size: 226232496 relation: main_file file_date_updated: 2020-07-14T12:47:04Z has_accepted_license: '1' keyword: - Immunological synapse month: '08' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria status: public title: Immunological synapse DC-Tcells tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2017' ... --- _id: '5560' abstract: - lang: eng text: "This repository contains the data collected for the manuscript \"Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity\".\r\nThe data is compressed into a single archive. Within the archive, different folders correspond to figures of the main text and the SI of the related publication.\r\nData is saved as plain text, with each folder containing a separate readme file describing the format. Typically, the data is from fluorescence microscopy measurements of single cells growing in a microfluidic \"mother machine\" device, and consists of relevant values (primarily arbitrary unit or normalized fluorescence measurements, and division times / growth rates) after raw microscopy images have been processed, segmented, and their features extracted, as described in the methods section of the related publication." article_processing_charge: No author: - first_name: Tobias full_name: Bergmiller, Tobias id: 2C471CFA-F248-11E8-B48F-1D18A9856A87 last_name: Bergmiller orcid: 0000-0001-5396-4346 - first_name: Anna M full_name: Andersson, Anna M id: 2B8A40DA-F248-11E8-B48F-1D18A9856A87 last_name: Andersson orcid: 0000-0003-2912-6769 - first_name: Kathrin full_name: Tomasek, Kathrin id: 3AEC8556-F248-11E8-B48F-1D18A9856A87 last_name: Tomasek orcid: 0000-0003-3768-877X - first_name: Enrique full_name: Balleza, Enrique last_name: Balleza - first_name: Daniel full_name: Kiviet, Daniel last_name: Kiviet - first_name: Robert full_name: Hauschild, Robert id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87 last_name: Hauschild orcid: 0000-0001-9843-3522 - first_name: Gasper full_name: Tkacik, Gasper id: 3D494DCA-F248-11E8-B48F-1D18A9856A87 last_name: Tkacik orcid: 0000-0002-6699-1455 - first_name: Calin C full_name: Guet, Calin C id: 47F8433E-F248-11E8-B48F-1D18A9856A87 last_name: Guet orcid: 0000-0001-6220-2052 citation: ama: Bergmiller T, Andersson AM, Tomasek K, et al. Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity. 2017. doi:10.15479/AT:ISTA:53 apa: Bergmiller, T., Andersson, A. M., Tomasek, K., Balleza, E., Kiviet, D., Hauschild, R., … Guet, C. C. (2017). Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:53 chicago: Bergmiller, Tobias, Anna M Andersson, Kathrin Tomasek, Enrique Balleza, Daniel Kiviet, Robert Hauschild, Gašper Tkačik, and Calin C Guet. “Biased Partitioning of the Multi-Drug Efflux Pump AcrAB-TolC Underlies Long-Lived Phenotypic Heterogeneity.” Institute of Science and Technology Austria, 2017. https://doi.org/10.15479/AT:ISTA:53. ieee: T. Bergmiller et al., “Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity.” Institute of Science and Technology Austria, 2017. ista: Bergmiller T, Andersson AM, Tomasek K, Balleza E, Kiviet D, Hauschild R, Tkačik G, Guet CC. 2017. Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity, Institute of Science and Technology Austria, 10.15479/AT:ISTA:53. mla: Bergmiller, Tobias, et al. Biased Partitioning of the Multi-Drug Efflux Pump AcrAB-TolC Underlies Long-Lived Phenotypic Heterogeneity. Institute of Science and Technology Austria, 2017, doi:10.15479/AT:ISTA:53. short: T. Bergmiller, A.M. Andersson, K. Tomasek, E. Balleza, D. Kiviet, R. Hauschild, G. Tkačik, C.C. Guet, (2017). datarep_id: '53' date_created: 2018-12-12T12:31:32Z date_published: 2017-03-10T00:00:00Z date_updated: 2024-02-21T13:49:00Z day: '10' ddc: - '571' department: - _id: CaGu - _id: GaTk - _id: Bio doi: 10.15479/AT:ISTA:53 file: - access_level: open_access checksum: d77859af757ac8025c50c7b12b52eaf3 content_type: application/zip creator: system date_created: 2018-12-12T13:02:38Z date_updated: 2020-07-14T12:47:03Z file_id: '5603' file_name: IST-2017-53-v1+1_Data_MDE.zip file_size: 6773204 relation: main_file file_date_updated: 2020-07-14T12:47:03Z has_accepted_license: '1' keyword: - single cell microscopy - mother machine microfluidic device - AcrAB-TolC pump - multi-drug efflux - Escherichia coli month: '03' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria related_material: record: - id: '665' relation: research_paper status: public status: public title: Biased partitioning of the multi-drug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2017' ... --- _id: '5571' abstract: - lang: eng text: "This folder contains all the data used in each of the main figures of \"The genomic characterization of the t-haplotype, a mouse meiotic driver, highlights its complex history and specialized biology\" (Kelemen, R., Vicoso, B.), as well as in the supplementary figures. \r\n" article_processing_charge: No author: - first_name: Beatriz full_name: Vicoso, Beatriz id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87 last_name: Vicoso orcid: 0000-0002-4579-8306 citation: ama: Vicoso B. Data for “The genomic characterization of the t-haplotype, a mouse meiotic driver, highlights its complex history and specialized biology.” 2017. doi:10.15479/AT:ISTA:78 apa: Vicoso, B. (2017). Data for “The genomic characterization of the t-haplotype, a mouse meiotic driver, highlights its complex history and specialized biology.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:78 chicago: Vicoso, Beatriz. “Data for ‘The Genomic Characterization of the t-Haplotype, a Mouse Meiotic Driver, Highlights Its Complex History and Specialized Biology.’” Institute of Science and Technology Austria, 2017. https://doi.org/10.15479/AT:ISTA:78. ieee: B. Vicoso, “Data for ‘The genomic characterization of the t-haplotype, a mouse meiotic driver, highlights its complex history and specialized biology.’” Institute of Science and Technology Austria, 2017. ista: Vicoso B. 2017. Data for ‘The genomic characterization of the t-haplotype, a mouse meiotic driver, highlights its complex history and specialized biology’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:78. mla: Vicoso, Beatriz. Data for “The Genomic Characterization of the t-Haplotype, a Mouse Meiotic Driver, Highlights Its Complex History and Specialized Biology.” Institute of Science and Technology Austria, 2017, doi:10.15479/AT:ISTA:78. short: B. Vicoso, (2017). contributor: - contributor_type: contact_person first_name: Beatriz id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87 last_name: Vicoso datarep_id: '78' date_created: 2018-12-12T12:31:36Z date_published: 2017-11-06T00:00:00Z date_updated: 2024-02-21T13:48:16Z day: '06' ddc: - '576' department: - _id: BeVi doi: 10.15479/AT:ISTA:78 file: - access_level: open_access checksum: 4520eb2b8379417ee916995719158f16 content_type: application/zip creator: system date_created: 2018-12-12T13:03:00Z date_updated: 2020-07-14T12:47:04Z file_id: '5618' file_name: IST-2017-78-v1+1_Data.zip file_size: 143697895 relation: main_file file_date_updated: 2020-07-14T12:47:04Z has_accepted_license: '1' month: '11' oa: 1 oa_version: Submitted Version publisher: Institute of Science and Technology Austria related_material: record: - id: '542' relation: research_paper status: public status: public title: Data for "The genomic characterization of the t-haplotype, a mouse meiotic driver, highlights its complex history and specialized biology" tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2017' ... --- _id: '5559' abstract: - lang: eng text: Strong amplifiers of natural selection article_processing_charge: No author: - first_name: Andreas full_name: Pavlogiannis, Andreas id: 49704004-F248-11E8-B48F-1D18A9856A87 last_name: Pavlogiannis orcid: 0000-0002-8943-0722 - first_name: Josef full_name: Tkadlec, Josef id: 3F24CCC8-F248-11E8-B48F-1D18A9856A87 last_name: Tkadlec orcid: 0000-0002-1097-9684 - first_name: Krishnendu full_name: Chatterjee, Krishnendu id: 2E5DCA20-F248-11E8-B48F-1D18A9856A87 last_name: Chatterjee orcid: 0000-0002-4561-241X - first_name: Martin full_name: Nowak , Martin last_name: 'Nowak ' citation: ama: Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. Strong amplifiers of natural selection. 2017. doi:10.15479/AT:ISTA:51 apa: Pavlogiannis, A., Tkadlec, J., Chatterjee, K., & Nowak , M. (2017). Strong amplifiers of natural selection. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:51 chicago: Pavlogiannis, Andreas, Josef Tkadlec, Krishnendu Chatterjee, and Martin Nowak . “Strong Amplifiers of Natural Selection.” Institute of Science and Technology Austria, 2017. https://doi.org/10.15479/AT:ISTA:51. ieee: A. Pavlogiannis, J. Tkadlec, K. Chatterjee, and M. Nowak , “Strong amplifiers of natural selection.” Institute of Science and Technology Austria, 2017. ista: Pavlogiannis A, Tkadlec J, Chatterjee K, Nowak M. 2017. Strong amplifiers of natural selection, Institute of Science and Technology Austria, 10.15479/AT:ISTA:51. mla: Pavlogiannis, Andreas, et al. Strong Amplifiers of Natural Selection. Institute of Science and Technology Austria, 2017, doi:10.15479/AT:ISTA:51. short: A. Pavlogiannis, J. Tkadlec, K. Chatterjee, M. Nowak , (2017). datarep_id: '51' date_created: 2018-12-12T12:31:32Z date_published: 2017-01-02T00:00:00Z date_updated: 2024-02-21T13:48:42Z day: '02' ddc: - '519' department: - _id: KrCh doi: 10.15479/AT:ISTA:51 ec_funded: 1 file: - access_level: open_access checksum: b427dd46a30096a1911b245640c47af8 content_type: video/mp4 creator: system date_created: 2018-12-12T13:05:18Z date_updated: 2020-07-14T12:47:02Z file_id: '5644' file_name: IST-2017-51-v1+2_illustration.mp4 file_size: 32987015 relation: main_file file_date_updated: 2020-07-14T12:47:02Z has_accepted_license: '1' keyword: - natural selection month: '01' oa: 1 oa_version: Published Version project: - _id: 2581B60A-B435-11E9-9278-68D0E5697425 call_identifier: FP7 grant_number: '279307' name: 'Quantitative Graph Games: Theory and Applications' publisher: Institute of Science and Technology Austria related_material: record: - id: '5452' relation: research_paper status: public - id: '5751' relation: research_paper status: public status: public title: Strong amplifiers of natural selection type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2017' ... --- _id: '5572' abstract: - lang: eng text: Code described in the Supplementary Methods of "The genomic characterization of the t-haplotype, a mouse meiotic driver, highlights its complex history and specialized biology" (Kelemen, R., Vicoso, B.) article_processing_charge: No author: - first_name: Beatriz full_name: Vicoso, Beatriz id: 49E1C5C6-F248-11E8-B48F-1D18A9856A87 last_name: Vicoso orcid: 0000-0002-4579-8306 citation: ama: Vicoso B. Code for “The genomic characterization of the t-haplotype, a mouse meiotic driver, highlights its complex history and specialized biology.” 2017. doi:10.15479/AT:ISTA:79 apa: Vicoso, B. (2017). Code for “The genomic characterization of the t-haplotype, a mouse meiotic driver, highlights its complex history and specialized biology.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:79 chicago: Vicoso, Beatriz. “Code for ‘The Genomic Characterization of the t-Haplotype, a Mouse Meiotic Driver, Highlights Its Complex History and Specialized Biology.’” Institute of Science and Technology Austria, 2017. https://doi.org/10.15479/AT:ISTA:79 . ieee: B. Vicoso, “Code for ‘The genomic characterization of the t-haplotype, a mouse meiotic driver, highlights its complex history and specialized biology.’” Institute of Science and Technology Austria, 2017. ista: Vicoso B. 2017. Code for ‘The genomic characterization of the t-haplotype, a mouse meiotic driver, highlights its complex history and specialized biology’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:79 . mla: Vicoso, Beatriz. Code for “The Genomic Characterization of the t-Haplotype, a Mouse Meiotic Driver, Highlights Its Complex History and Specialized Biology.” Institute of Science and Technology Austria, 2017, doi:10.15479/AT:ISTA:79 . short: B. Vicoso, (2017). datarep_id: '79' date_created: 2018-12-12T12:31:36Z date_published: 2017-11-06T00:00:00Z date_updated: 2024-02-21T13:48:28Z day: '06' ddc: - '576' department: - _id: BeVi doi: '10.15479/AT:ISTA:79 ' file: - access_level: open_access checksum: 3e70a7bcd6ff0c38b79e4c8a7d137034 content_type: application/zip creator: system date_created: 2018-12-12T13:05:15Z date_updated: 2020-07-14T12:47:05Z file_id: '5643' file_name: IST-2017-79-v1+1_Code.zip file_size: 49823 relation: main_file file_date_updated: 2020-07-14T12:47:05Z has_accepted_license: '1' month: '11' oa: 1 oa_version: Submitted Version publisher: Institute of Science and Technology Austria related_material: record: - id: '542' relation: research_paper status: public status: public title: Code for "The genomic characterization of the t-haplotype, a mouse meiotic driver, highlights its complex history and specialized biology" tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2017' ... --- _id: '5565' abstract: - lang: eng text: "One of the key questions in understanding plant development is how single cells behave in a larger context of the tissue. Therefore, it requires the observation of the whole organ with a high spatial- as well as temporal resolution over prolonged periods of time, which may cause photo-toxic effects. This protocol shows a plant sample preparation method for light-sheet microscopy, which is characterized by mounting the plant vertically on the surface of a gel. The plant is mounted in such a way that the roots are submerged in a liquid medium while the leaves remain in the air. In order to ensure photosynthetic activity of the plant, a custom-made lighting system illuminates the leaves. To keep the roots in darkness the water surface is covered with sheets of black plastic foil. This method allows long-term imaging of plant organ development in standardized conditions. \r\nThe Video is licensed under a CC BY NC ND license. " acknowledgement: 'fund: FP7-ERC 0101109' article_processing_charge: No author: - first_name: Daniel full_name: Von Wangenheim, Daniel id: 49E91952-F248-11E8-B48F-1D18A9856A87 last_name: Von Wangenheim orcid: 0000-0002-6862-1247 - first_name: Robert full_name: Hauschild, Robert id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87 last_name: Hauschild orcid: 0000-0001-9843-3522 - first_name: Jirí full_name: Friml, Jirí id: 4159519E-F248-11E8-B48F-1D18A9856A87 last_name: Friml orcid: 0000-0002-8302-7596 citation: ama: von Wangenheim D, Hauschild R, Friml J. Light Sheet Fluorescence microscopy of plant roots growing on the surface of a gel. 2017. doi:10.15479/AT:ISTA:66 apa: von Wangenheim, D., Hauschild, R., & Friml, J. (2017). Light Sheet Fluorescence microscopy of plant roots growing on the surface of a gel. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:66 chicago: Wangenheim, Daniel von, Robert Hauschild, and Jiří Friml. “Light Sheet Fluorescence Microscopy of Plant Roots Growing on the Surface of a Gel.” Institute of Science and Technology Austria, 2017. https://doi.org/10.15479/AT:ISTA:66. ieee: D. von Wangenheim, R. Hauschild, and J. Friml, “Light Sheet Fluorescence microscopy of plant roots growing on the surface of a gel.” Institute of Science and Technology Austria, 2017. ista: von Wangenheim D, Hauschild R, Friml J. 2017. Light Sheet Fluorescence microscopy of plant roots growing on the surface of a gel, Institute of Science and Technology Austria, 10.15479/AT:ISTA:66. mla: von Wangenheim, Daniel, et al. Light Sheet Fluorescence Microscopy of Plant Roots Growing on the Surface of a Gel. Institute of Science and Technology Austria, 2017, doi:10.15479/AT:ISTA:66. short: D. von Wangenheim, R. Hauschild, J. Friml, (2017). datarep_id: '66' date_created: 2018-12-12T12:31:34Z date_published: 2017-04-10T00:00:00Z date_updated: 2024-02-21T13:49:13Z day: '10' ddc: - '580' department: - _id: JiFr - _id: Bio doi: 10.15479/AT:ISTA:66 ec_funded: 1 file: - access_level: open_access checksum: b7552fc23540a85dc5a22fd4484eae71 content_type: video/mp4 creator: system date_created: 2018-12-12T13:02:33Z date_updated: 2020-07-14T12:47:03Z file_id: '5599' file_name: IST-2017-66-v1+1_WangenheimHighResolution55044-NEW_1.mp4 file_size: 101497758 relation: main_file file_date_updated: 2020-07-14T12:47:03Z has_accepted_license: '1' month: '04' oa: 1 oa_version: Published Version project: - _id: 25681D80-B435-11E9-9278-68D0E5697425 call_identifier: FP7 grant_number: '291734' name: International IST Postdoc Fellowship Programme publisher: Institute of Science and Technology Austria publist_id: '6302' related_material: record: - id: '1078' relation: research_paper status: public status: public title: Light Sheet Fluorescence microscopy of plant roots growing on the surface of a gel type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2017' ... --- _id: '5566' abstract: - lang: eng text: Current minimal version of TipTracker article_processing_charge: No author: - first_name: Robert full_name: Hauschild, Robert id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87 last_name: Hauschild orcid: 0000-0001-9843-3522 citation: ama: Hauschild R. Live tracking of moving samples in confocal microscopy for vertically grown roots. 2017. doi:10.15479/AT:ISTA:69 apa: Hauschild, R. (2017). Live tracking of moving samples in confocal microscopy for vertically grown roots. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:69 chicago: Hauschild, Robert. “Live Tracking of Moving Samples in Confocal Microscopy for Vertically Grown Roots.” Institute of Science and Technology Austria, 2017. https://doi.org/10.15479/AT:ISTA:69. ieee: R. Hauschild, “Live tracking of moving samples in confocal microscopy for vertically grown roots.” Institute of Science and Technology Austria, 2017. ista: Hauschild R. 2017. Live tracking of moving samples in confocal microscopy for vertically grown roots, Institute of Science and Technology Austria, 10.15479/AT:ISTA:69. mla: Hauschild, Robert. Live Tracking of Moving Samples in Confocal Microscopy for Vertically Grown Roots. Institute of Science and Technology Austria, 2017, doi:10.15479/AT:ISTA:69. short: R. Hauschild, (2017). datarep_id: '69' date_created: 2018-12-12T12:31:34Z date_published: 2017-07-21T00:00:00Z date_updated: 2024-02-21T13:49:34Z day: '21' ddc: - '570' department: - _id: Bio doi: 10.15479/AT:ISTA:69 file: - access_level: open_access checksum: a976000e6715106724a271cc9422be4a content_type: application/zip creator: system date_created: 2018-12-12T13:04:12Z date_updated: 2020-07-14T12:47:04Z file_id: '5636' file_name: IST-2017-69-v1+2_TipTrackerZeissLSM700.zip file_size: 1587986 relation: main_file file_date_updated: 2020-07-14T12:47:04Z has_accepted_license: '1' keyword: - tool - tracking - confocal microscopy month: '07' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria related_material: record: - id: '946' relation: research_paper status: public status: public title: Live tracking of moving samples in confocal microscopy for vertically grown roots tmp: image: /images/cc_by_sa.png legal_code_url: https://creativecommons.org/licenses/by-sa/4.0/legalcode name: Creative Commons Attribution-ShareAlike 4.0 International Public License (CC BY-SA 4.0) short: CC BY-SA (4.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2017' ... --- _id: '5550' abstract: - lang: eng text: "We collected flower colour information on species in the tribe Antirrhineae from taxonomic literature. We also retreived molecular data from GenBank for as many of these species as possible to estimate phylogenetic relationships among these taxa. We then used the R package 'diversitree' to examine patterns of evolutionary transitions between anthocyanin and yellow pigmentation across the phylogeny.\r\n\r\nFor full details of the methods see:\r\nEllis TJ and Field DL \"Repeated gains in yellow and anthocyanin pigmentation in flower colour transitions in the Antirrhineae”, Annals of Botany (in press)" article_processing_charge: No author: - first_name: Thomas full_name: Ellis, Thomas id: 3153D6D4-F248-11E8-B48F-1D18A9856A87 last_name: Ellis orcid: 0000-0002-8511-0254 - first_name: David full_name: Field, David id: 419049E2-F248-11E8-B48F-1D18A9856A87 last_name: Field orcid: 0000-0002-4014-8478 citation: ama: Ellis T, Field D. Flower colour data and phylogeny (NEXUS) files. 2016. doi:10.15479/AT:ISTA:34 apa: Ellis, T., & Field, D. (2016). Flower colour data and phylogeny (NEXUS) files. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:34 chicago: Ellis, Thomas, and David Field. “Flower Colour Data and Phylogeny (NEXUS) Files.” Institute of Science and Technology Austria, 2016. https://doi.org/10.15479/AT:ISTA:34. ieee: T. Ellis and D. Field, “Flower colour data and phylogeny (NEXUS) files.” Institute of Science and Technology Austria, 2016. ista: Ellis T, Field D. 2016. Flower colour data and phylogeny (NEXUS) files, Institute of Science and Technology Austria, 10.15479/AT:ISTA:34. mla: Ellis, Thomas, and David Field. Flower Colour Data and Phylogeny (NEXUS) Files. Institute of Science and Technology Austria, 2016, doi:10.15479/AT:ISTA:34. short: T. Ellis, D. Field, (2016). datarep_id: '34' date_created: 2018-12-12T12:31:29Z date_published: 2016-02-19T00:00:00Z date_updated: 2024-02-21T13:49:54Z day: '19' ddc: - '576' department: - _id: NiBa doi: 10.15479/AT:ISTA:34 file: - access_level: open_access checksum: 950f85b80427d357bfeff09608ba02e9 content_type: application/zip creator: system date_created: 2018-12-12T13:02:27Z date_updated: 2020-07-14T12:47:00Z file_id: '5594' file_name: IST-2016-34-v1+1_tellis_flower_colour_data.zip file_size: 4468543 relation: main_file file_date_updated: 2020-07-14T12:47:00Z has_accepted_license: '1' month: '02' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria publist_id: '5828' related_material: record: - id: '1382' relation: research_paper status: public status: public title: Flower colour data and phylogeny (NEXUS) files tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2016' ... --- _id: '5555' abstract: - lang: eng text: This FIJI script calculates the population average of the migration speed as a function of time of all cells from wide field microscopy movies. article_processing_charge: No author: - first_name: Robert full_name: Hauschild, Robert id: 4E01D6B4-F248-11E8-B48F-1D18A9856A87 last_name: Hauschild orcid: 0000-0001-9843-3522 citation: ama: Hauschild R. Fiji script to determine average speed and direction of migration of cells. 2016. doi:10.15479/AT:ISTA:44 apa: Hauschild, R. (2016). Fiji script to determine average speed and direction of migration of cells. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:44 chicago: Hauschild, Robert. “Fiji Script to Determine Average Speed and Direction of Migration of Cells.” Institute of Science and Technology Austria, 2016. https://doi.org/10.15479/AT:ISTA:44. ieee: R. Hauschild, “Fiji script to determine average speed and direction of migration of cells.” Institute of Science and Technology Austria, 2016. ista: Hauschild R. 2016. Fiji script to determine average speed and direction of migration of cells, Institute of Science and Technology Austria, 10.15479/AT:ISTA:44. mla: Hauschild, Robert. Fiji Script to Determine Average Speed and Direction of Migration of Cells. Institute of Science and Technology Austria, 2016, doi:10.15479/AT:ISTA:44. short: R. Hauschild, (2016). datarep_id: '44' date_created: 2018-12-12T12:31:31Z date_published: 2016-07-08T00:00:00Z date_updated: 2024-02-21T13:50:06Z day: '08' ddc: - '570' department: - _id: Bio doi: 10.15479/AT:ISTA:44 file: - access_level: open_access checksum: 9f96cddbcd4ed689f48712ffe234d5e5 content_type: application/zip creator: system date_created: 2018-12-12T13:03:03Z date_updated: 2020-07-14T12:47:02Z file_id: '5621' file_name: IST-2016-44-v1+1_migrationAnalyzer.zip file_size: 20692 relation: main_file file_date_updated: 2020-07-14T12:47:02Z has_accepted_license: '1' keyword: - cell migration - wide field microscopy - FIJI month: '07' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria status: public title: Fiji script to determine average speed and direction of migration of cells tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2016' ... --- _id: '5557' abstract: - lang: eng text: "Small synthetic discrete tomography problems.\r\nSizes are 32x32, 64z64 and 256x256.\r\nProjection angles are 2, 4, and 6.\r\nNumber of labels are 3 and 5." article_processing_charge: No author: - first_name: Paul full_name: Swoboda, Paul id: 446560C6-F248-11E8-B48F-1D18A9856A87 last_name: Swoboda citation: ama: Swoboda P. Synthetic discrete tomography problems. 2016. doi:10.15479/AT:ISTA:46 apa: Swoboda, P. (2016). Synthetic discrete tomography problems. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:46 chicago: Swoboda, Paul. “Synthetic Discrete Tomography Problems.” Institute of Science and Technology Austria, 2016. https://doi.org/10.15479/AT:ISTA:46. ieee: P. Swoboda, “Synthetic discrete tomography problems.” Institute of Science and Technology Austria, 2016. ista: Swoboda P. 2016. Synthetic discrete tomography problems, Institute of Science and Technology Austria, 10.15479/AT:ISTA:46. mla: Swoboda, Paul. Synthetic Discrete Tomography Problems. Institute of Science and Technology Austria, 2016, doi:10.15479/AT:ISTA:46. short: P. Swoboda, (2016). contributor: - contributor_type: data_collector first_name: Jan last_name: Kuske datarep_id: '46' date_created: 2018-12-12T12:31:31Z date_published: 2016-09-20T00:00:00Z date_updated: 2024-02-21T13:50:21Z day: '20' ddc: - '006' department: - _id: VlKo doi: 10.15479/AT:ISTA:46 file: - access_level: open_access checksum: aa5a16a0dc888da7186fb8fc45e88439 content_type: application/zip creator: system date_created: 2018-12-12T13:05:19Z date_updated: 2020-07-14T12:47:02Z file_id: '5645' file_name: IST-2016-46-v1+1_discrete_tomography_synthetic.zip file_size: 36058401 relation: main_file file_date_updated: 2020-07-14T12:47:02Z has_accepted_license: '1' keyword: - discrete tomography month: '09' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria status: public title: Synthetic discrete tomography problems tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2016' ... --- _id: '5553' abstract: - lang: eng text: "Genotypic, phenotypic and demographic data for 2128 wild snapdragons and 1127 open-pollinated progeny from a natural hybrid zone, collected as part of Tom Ellis' PhD thesis (submitted) February 2016).\r\n\r\nTissue samples were sent to LGC Genomics in Berlin for DNA extraction, and genotyping at 70 SNP markers by KASPR genotyping. 29 of these SNPs failed to amplify reliably, and have been removed from this dataset.\r\n\r\nOther data were retreived from an online database of this population at www.antspec.org." article_processing_charge: No author: - first_name: David full_name: Field, David id: 419049E2-F248-11E8-B48F-1D18A9856A87 last_name: Field orcid: 0000-0002-4014-8478 - first_name: Thomas full_name: Ellis, Thomas id: 3153D6D4-F248-11E8-B48F-1D18A9856A87 last_name: Ellis orcid: 0000-0002-8511-0254 citation: ama: Field D, Ellis T. Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012. 2016. doi:10.15479/AT:ISTA:37 apa: Field, D., & Ellis, T. (2016). Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:37 chicago: Field, David, and Thomas Ellis. “Inference of Mating Patterns among Wild Snapdragons in a Natural Hybrid Zone in 2012.” Institute of Science and Technology Austria, 2016. https://doi.org/10.15479/AT:ISTA:37. ieee: D. Field and T. Ellis, “Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012.” Institute of Science and Technology Austria, 2016. ista: Field D, Ellis T. 2016. Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012, Institute of Science and Technology Austria, 10.15479/AT:ISTA:37. mla: Field, David, and Thomas Ellis. Inference of Mating Patterns among Wild Snapdragons in a Natural Hybrid Zone in 2012. Institute of Science and Technology Austria, 2016, doi:10.15479/AT:ISTA:37. short: D. Field, T. Ellis, (2016). contributor: - contributor_type: project_manager first_name: Nicholas H id: 4880FE40-F248-11E8-B48F-1D18A9856A87 last_name: Barton orcid: 0000-0002-8548-5240 datarep_id: '37' date_created: 2018-12-12T12:31:30Z date_published: 2016-02-19T00:00:00Z date_updated: 2024-02-21T13:51:14Z day: '19' ddc: - '576' department: - _id: NiBa doi: 10.15479/AT:ISTA:37 file: - access_level: open_access checksum: 4ae751b1fa4897fa216241f975a57313 content_type: application/zip creator: system date_created: 2018-12-12T13:03:02Z date_updated: 2020-07-14T12:47:01Z file_id: '5620' file_name: IST-2016-37-v1+1_paternity_archive.zip file_size: 132808 relation: main_file file_date_updated: 2020-07-14T12:47:01Z has_accepted_license: '1' keyword: - paternity assignment - pedigree - matting patterns - assortative mating - Antirrhinum majus - frequency-dependent selection - plant-pollinator interaction month: '02' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria related_material: record: - id: '1398' relation: research_paper status: public status: public title: Inference of mating patterns among wild snapdragons in a natural hybrid zone in 2012 tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2016' ... --- _id: '5551' abstract: - lang: eng text: "Data from array experiments investigating pollinator behaviour on snapdragons in controlled conditions, and their effect on plant mating. Data were collected as part of Tom Ellis' PhD thesis , submitted February 2016.\r\n\r\nWe placed a total of 36 plants in a grid inside a closed organza tent, with a single hive of commercially bred bumblebees (Bombus hortorum). We used only the yellow-flowered Antirrhinum majus striatum and the magenta-flowered Antirrhinum majus pseudomajus, at ratios of 6:36, 12:24, 18:18, 24:12 and 30:6.\r\n\r\nAfter 24 hours to learn how to deal with snapdragons, I observed pollinators foraging on plants, and recorded the transitions between plants. Thereafter seeds on plants were allowed to develops. A sample of these were grown to maturity when their flower colour could be determined, and they were scored as yellow, magenta, or hybrid." article_processing_charge: No author: - first_name: Thomas full_name: Ellis, Thomas id: 3153D6D4-F248-11E8-B48F-1D18A9856A87 last_name: Ellis orcid: 0000-0002-8511-0254 citation: ama: Ellis T. Data on pollinator observations and offpsring phenotypes. 2016. doi:10.15479/AT:ISTA:35 apa: Ellis, T. (2016). Data on pollinator observations and offpsring phenotypes. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:35 chicago: Ellis, Thomas. “Data on Pollinator Observations and Offpsring Phenotypes.” Institute of Science and Technology Austria, 2016. https://doi.org/10.15479/AT:ISTA:35. ieee: T. Ellis, “Data on pollinator observations and offpsring phenotypes.” Institute of Science and Technology Austria, 2016. ista: Ellis T. 2016. Data on pollinator observations and offpsring phenotypes, Institute of Science and Technology Austria, 10.15479/AT:ISTA:35. mla: Ellis, Thomas. Data on Pollinator Observations and Offpsring Phenotypes. Institute of Science and Technology Austria, 2016, doi:10.15479/AT:ISTA:35. short: T. Ellis, (2016). contributor: - first_name: David id: 419049E2-F248-11E8-B48F-1D18A9856A87 last_name: Field - first_name: Nicholas H id: 4880FE40-F248-11E8-B48F-1D18A9856A87 last_name: Barton orcid: 0000-0002-8548-5240 datarep_id: '35' date_created: 2018-12-12T12:31:29Z date_published: 2016-02-19T00:00:00Z date_updated: 2024-02-21T13:51:27Z day: '19' department: - _id: NiBa doi: 10.15479/AT:ISTA:35 file: - access_level: open_access checksum: aa3eb85d52b110cd192aa23147c4d4f3 content_type: application/zip creator: system date_created: 2018-12-12T13:05:12Z date_updated: 2020-07-14T12:47:01Z file_id: '5640' file_name: IST-2016-35-v1+1_array_data.zip file_size: 32775 relation: main_file file_date_updated: 2020-07-14T12:47:01Z has_accepted_license: '1' month: '02' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria related_material: record: - id: '1398' relation: research_paper status: public status: public title: Data on pollinator observations and offpsring phenotypes tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2016' ... --- _id: '5552' abstract: - lang: eng text: "Data on pollinator visitation to wild snapdragons in a natural hybrid zone, collected as part of Tom Ellis' PhD thesis (submitted February 2016).\r\n\r\nSnapdragon flowers have a mouth-like structure which pollinators must open to access nectar. We placed 5mm cellophane tags in these mouths, which are held in place by the pressure of the flower until a pollinator visits. When she opens the flower, the tag drops out, and one can infer a visit. We surveyed plants over multiple days in 2010, 2011 and 2012.\r\n\r\nAlso included are data on phenotypic and demographic variables which may be explanatory variables for pollinator visitation." article_processing_charge: No author: - first_name: Thomas full_name: Ellis, Thomas id: 3153D6D4-F248-11E8-B48F-1D18A9856A87 last_name: Ellis orcid: 0000-0002-8511-0254 citation: ama: Ellis T. Pollinator visitation data for wild Antirrhinum majus plants, with phenotypic and frequency data. 2016. doi:10.15479/AT:ISTA:36 apa: Ellis, T. (2016). Pollinator visitation data for wild Antirrhinum majus plants, with phenotypic and frequency data. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:36 chicago: Ellis, Thomas. “Pollinator Visitation Data for Wild Antirrhinum Majus Plants, with Phenotypic and Frequency Data.” Institute of Science and Technology Austria, 2016. https://doi.org/10.15479/AT:ISTA:36. ieee: T. Ellis, “Pollinator visitation data for wild Antirrhinum majus plants, with phenotypic and frequency data.” Institute of Science and Technology Austria, 2016. ista: Ellis T. 2016. Pollinator visitation data for wild Antirrhinum majus plants, with phenotypic and frequency data., Institute of Science and Technology Austria, 10.15479/AT:ISTA:36. mla: Ellis, Thomas. Pollinator Visitation Data for Wild Antirrhinum Majus Plants, with Phenotypic and Frequency Data. Institute of Science and Technology Austria, 2016, doi:10.15479/AT:ISTA:36. short: T. Ellis, (2016). contributor: - first_name: David id: 419049E2-F248-11E8-B48F-1D18A9856A87 last_name: Field - first_name: Nicholas H id: 4880FE40-F248-11E8-B48F-1D18A9856A87 last_name: Barton orcid: 0000-0002-8548-5240 datarep_id: '36' date_created: 2018-12-12T12:31:30Z date_published: 2016-02-19T00:00:00Z date_updated: 2024-02-21T13:51:40Z day: '19' department: - _id: NiBa doi: 10.15479/AT:ISTA:36 file: - access_level: open_access checksum: cbc61b523d4d475a04a737d50dc470ef content_type: application/zip creator: system date_created: 2018-12-12T13:03:07Z date_updated: 2020-07-14T12:47:01Z file_id: '5625' file_name: IST-2016-36-v1+1_tag_assay_archive.zip file_size: 44905 relation: main_file file_date_updated: 2020-07-14T12:47:01Z has_accepted_license: '1' month: '02' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria related_material: record: - id: '1398' relation: research_paper status: public status: public title: Pollinator visitation data for wild Antirrhinum majus plants, with phenotypic and frequency data. type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2016' ... --- _id: '5554' abstract: - lang: eng text: "The data stored here is used in Murat Tugrul's PhD thesis (Chapter 3), which is related to the evolution of bacterial RNA polymerase binding.\r\nMagdalena Steinrueck (PhD Student in Calin Guet's group at IST Austria) performed the experiments and created the data on de novo promoter evolution. Fabienne Jesse (PhD Student in Jon Bollback's group at IST Austria) performed the experiments and created the data on lac promoter evolution." article_processing_charge: No author: - first_name: Murat full_name: Tugrul, Murat id: 37C323C6-F248-11E8-B48F-1D18A9856A87 last_name: Tugrul orcid: 0000-0002-8523-0758 citation: ama: Tugrul M. Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase. 2016. doi:10.15479/AT:ISTA:43 apa: Tugrul, M. (2016). Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:43 chicago: Tugrul, Murat. “Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase.” Institute of Science and Technology Austria, 2016. https://doi.org/10.15479/AT:ISTA:43. ieee: M. Tugrul, “Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase.” Institute of Science and Technology Austria, 2016. ista: Tugrul M. 2016. Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase, Institute of Science and Technology Austria, 10.15479/AT:ISTA:43. mla: Tugrul, Murat. Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase. Institute of Science and Technology Austria, 2016, doi:10.15479/AT:ISTA:43. short: M. Tugrul, (2016). contributor: - contributor_type: researcher first_name: Magdalena id: 2C023F40-F248-11E8-B48F-1D18A9856A87 last_name: Steinrück - contributor_type: researcher first_name: Fabienne id: 4C8C26A4-F248-11E8-B48F-1D18A9856A87 last_name: Jesse datarep_id: '43' date_created: 2018-12-12T12:31:30Z date_published: 2016-05-12T00:00:00Z date_updated: 2024-02-21T13:50:34Z day: '12' department: - _id: NiBa - _id: JoBo doi: 10.15479/AT:ISTA:43 file: - access_level: open_access checksum: 1fc0a10bb7ce110fcb5e1fbe3cf0c4e2 content_type: application/zip creator: system date_created: 2018-12-12T13:03:08Z date_updated: 2020-07-14T12:47:01Z file_id: '5626' file_name: IST-2016-43-v1+1_DATA_MTugrul_PhDThesis_Chapter3.zip file_size: 1123495 relation: main_file file_date_updated: 2020-07-14T12:47:01Z has_accepted_license: '1' keyword: - RNAP binding - de novo promoter evolution - lac promoter month: '05' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria related_material: record: - id: '1131' relation: used_in_publication status: public status: public title: Experimental Data for Binding Site Evolution of Bacterial RNA Polymerase tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2016' ... --- _id: '5558' abstract: - lang: eng text: PhD thesis LaTeX source code article_processing_charge: No author: - first_name: Morten full_name: Bojsen-Hansen, Morten id: 439F0C8C-F248-11E8-B48F-1D18A9856A87 last_name: Bojsen-Hansen orcid: 0000-0002-4417-3224 citation: ama: Bojsen-Hansen M. Tracking, Correcting and Absorbing Water Surface Waves. 2016. doi:10.15479/AT:ISTA:48 apa: Bojsen-Hansen, M. (2016). Tracking, Correcting and Absorbing Water Surface Waves. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:48 chicago: Bojsen-Hansen, Morten. “Tracking, Correcting and Absorbing Water Surface Waves.” Institute of Science and Technology Austria, 2016. https://doi.org/10.15479/AT:ISTA:48. ieee: M. Bojsen-Hansen, “Tracking, Correcting and Absorbing Water Surface Waves.” Institute of Science and Technology Austria, 2016. ista: Bojsen-Hansen M. 2016. Tracking, Correcting and Absorbing Water Surface Waves, Institute of Science and Technology Austria, 10.15479/AT:ISTA:48. mla: Bojsen-Hansen, Morten. Tracking, Correcting and Absorbing Water Surface Waves. Institute of Science and Technology Austria, 2016, doi:10.15479/AT:ISTA:48. short: M. Bojsen-Hansen, (2016). datarep_id: '48' date_created: 2018-12-12T12:31:31Z date_published: 2016-09-23T00:00:00Z date_updated: 2024-02-21T13:50:48Z day: '23' ddc: - '004' department: - _id: ChWo doi: 10.15479/AT:ISTA:48 file: - access_level: open_access checksum: 5b1b256ad796fbddb4b7729f5e45e444 content_type: application/x-bzip2 creator: system date_created: 2018-12-12T13:02:18Z date_updated: 2020-07-14T12:47:02Z file_id: '5589' file_name: IST-2016-48-v1+1_2016_Bojsen-Hansen_TCaAWSW.tar.bz2 file_size: 55237885 relation: main_file file_date_updated: 2020-07-14T12:47:02Z has_accepted_license: '1' month: '09' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria publist_id: '6238' pubrep_id: '640' related_material: record: - id: '1122' relation: other status: public status: public title: Tracking, Correcting and Absorbing Water Surface Waves tmp: image: /images/cc_by.png legal_code_url: https://creativecommons.org/licenses/by/4.0/legalcode name: Creative Commons Attribution 4.0 International Public License (CC-BY 4.0) short: CC BY (4.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2016' ... --- _id: '5556' abstract: - lang: eng text: "MATLAB code and processed datasets available for reproducing the results in: \r\nLukačišin, M.*, Landon, M.*, Jajoo, R*. (2016) Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.\r\n*equal contributions" article_processing_charge: No author: - first_name: Martin full_name: Lukacisin, Martin id: 298FFE8C-F248-11E8-B48F-1D18A9856A87 last_name: Lukacisin orcid: 0000-0001-6549-4177 - first_name: Matthieu full_name: Landon, Matthieu last_name: Landon - first_name: Rishi full_name: Jajoo, Rishi last_name: Jajoo citation: ama: Lukacisin M, Landon M, Jajoo R. MATLAB analysis code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.” 2016. doi:10.15479/AT:ISTA:45 apa: Lukacisin, M., Landon, M., & Jajoo, R. (2016). MATLAB analysis code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.” Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:45 chicago: Lukacisin, Martin, Matthieu Landon, and Rishi Jajoo. “MATLAB Analysis Code for ‘Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.’” Institute of Science and Technology Austria, 2016. https://doi.org/10.15479/AT:ISTA:45. ieee: M. Lukacisin, M. Landon, and R. Jajoo, “MATLAB analysis code for ‘Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.’” Institute of Science and Technology Austria, 2016. ista: Lukacisin M, Landon M, Jajoo R. 2016. MATLAB analysis code for ‘Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast’, Institute of Science and Technology Austria, 10.15479/AT:ISTA:45. mla: Lukacisin, Martin, et al. MATLAB Analysis Code for “Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast.” Institute of Science and Technology Austria, 2016, doi:10.15479/AT:ISTA:45. short: M. Lukacisin, M. Landon, R. Jajoo, (2016). datarep_id: '45' date_created: 2018-12-12T12:31:31Z date_published: 2016-08-25T00:00:00Z date_updated: 2024-02-21T13:51:53Z day: '25' ddc: - '571' department: - _id: ToBo doi: 10.15479/AT:ISTA:45 file: - access_level: open_access checksum: ee697f2b1ade4dc14d6ac0334dd832ab content_type: application/zip creator: system date_created: 2018-12-12T13:02:58Z date_updated: 2020-07-14T12:47:02Z file_id: '5616' file_name: IST-2016-45-v1+1_PaperCode.zip file_size: 296722548 relation: main_file file_date_updated: 2020-07-14T12:47:02Z has_accepted_license: '1' keyword: - transcription - pausing - backtracking - polymerase - RNA - NET-seq - nucleosome - basepairing month: '08' oa: 1 oa_version: Published Version publisher: Institute of Science and Technology Austria related_material: record: - id: '8431' relation: used_in_publication status: deleted - id: '1029' relation: research_paper status: public status: public title: MATLAB analysis code for 'Sequence-Specific Thermodynamic Properties of Nucleic Acids Influence Both Transcriptional Pausing and Backtracking in Yeast' tmp: image: /images/cc_by_sa.png legal_code_url: https://creativecommons.org/licenses/by-sa/4.0/legalcode name: Creative Commons Attribution-ShareAlike 4.0 International Public License (CC BY-SA 4.0) short: CC BY-SA (4.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2016' ... --- _id: '5549' abstract: - lang: eng text: "This repository contains the experimental part of the CAV 2015 publication Counterexample Explanation by Learning Small Strategies in Markov Decision Processes.\r\nWe extended the probabilistic model checker PRISM to represent strategies of Markov Decision Processes as Decision Trees.\r\nThe archive contains a java executable version of the extended tool (prism_dectree.jar) together with a few examples of the PRISM benchmark library.\r\nTo execute the program, please have a look at the README.txt, which provides instructions and further information on the archive.\r\nThe archive contains scripts that (if run often enough) reproduces the data presented in the publication." article_processing_charge: No author: - first_name: Andreas full_name: Fellner, Andreas id: 42BABFB4-F248-11E8-B48F-1D18A9856A87 last_name: Fellner citation: ama: 'Fellner A. Experimental part of CAV 2015 publication: Counterexample Explanation by Learning Small Strategies in Markov Decision Processes. 2015. doi:10.15479/AT:ISTA:28' apa: 'Fellner, A. (2015). Experimental part of CAV 2015 publication: Counterexample Explanation by Learning Small Strategies in Markov Decision Processes. Institute of Science and Technology Austria. https://doi.org/10.15479/AT:ISTA:28' chicago: 'Fellner, Andreas. “Experimental Part of CAV 2015 Publication: Counterexample Explanation by Learning Small Strategies in Markov Decision Processes.” Institute of Science and Technology Austria, 2015. https://doi.org/10.15479/AT:ISTA:28.' ieee: 'A. Fellner, “Experimental part of CAV 2015 publication: Counterexample Explanation by Learning Small Strategies in Markov Decision Processes.” Institute of Science and Technology Austria, 2015.' ista: 'Fellner A. 2015. Experimental part of CAV 2015 publication: Counterexample Explanation by Learning Small Strategies in Markov Decision Processes, Institute of Science and Technology Austria, 10.15479/AT:ISTA:28.' mla: 'Fellner, Andreas. Experimental Part of CAV 2015 Publication: Counterexample Explanation by Learning Small Strategies in Markov Decision Processes. Institute of Science and Technology Austria, 2015, doi:10.15479/AT:ISTA:28.' short: A. Fellner, (2015). contributor: - first_name: Jan id: 44CEF464-F248-11E8-B48F-1D18A9856A87 last_name: Kretinsky datarep_id: '28' date_created: 2018-12-12T12:31:29Z date_published: 2015-08-13T00:00:00Z date_updated: 2024-02-21T13:52:07Z day: '13' ddc: - '004' department: - _id: KrCh - _id: ToHe doi: 10.15479/AT:ISTA:28 ec_funded: 1 file: - access_level: open_access checksum: b8bcb43c0893023cda66c1b69c16ac62 content_type: application/zip creator: system date_created: 2018-12-12T13:02:31Z date_updated: 2020-07-14T12:47:00Z file_id: '5597' file_name: IST-2015-28-v1+2_Fellner_DataRep.zip file_size: 49557109 relation: main_file file_date_updated: 2020-07-14T12:47:00Z has_accepted_license: '1' keyword: - Markov Decision Process - Decision Tree - Probabilistic Verification - Counterexample Explanation month: '08' oa: 1 oa_version: Published Version project: - _id: 2581B60A-B435-11E9-9278-68D0E5697425 call_identifier: FP7 grant_number: '279307' name: 'Quantitative Graph Games: Theory and Applications' - _id: 25832EC2-B435-11E9-9278-68D0E5697425 call_identifier: FWF grant_number: S 11407_N23 name: Rigorous Systems Engineering publisher: Institute of Science and Technology Austria publist_id: '5564' related_material: record: - id: '1603' relation: popular_science status: public status: public title: 'Experimental part of CAV 2015 publication: Counterexample Explanation by Learning Small Strategies in Markov Decision Processes' tmp: image: /images/cc_0.png legal_code_url: https://creativecommons.org/publicdomain/zero/1.0/legalcode name: Creative Commons Public Domain Dedication (CC0 1.0) short: CC0 (1.0) type: research_data user_id: 2DF688A6-F248-11E8-B48F-1D18A9856A87 year: '2015' ...