Davidovi, Anela, Remy P Chait, Gregory Batt, and Jakob Ruess. “Parameter Inference for Stochastic Biochemical Models from Perturbation Experiments Parallelised at the Single Cell Level.”https://doi.org/10.1371/journal.pcbi.1009950__PLoS Computational Biology. Public Library of Science, 2022.https://doi.org/10.1371/journal.pcbi.1009950 .

Ruess, Jakob, Maros Pleska, Calin C Guet, and Gasper Tkadik. “Molecular Noise of Innate Immunity Shapes Bacteria-Phage Ecologies.”https://doi.org/10.1371/journal.pcbi.1007168__PLoS Computational Biology. Public Library of Science, 2019.https://doi.org/10.1371/journal.pcbi.1007168 .

Ruess, Jakob, Maros Pleska, Calin C Guet, and Gasper Tkadik. “Supporting Text and Results.”https://doi.org/10.1371/journal.pcbi.1007168.s001__Public Library of Science, 2019.https://doi.org/10.1371/journal.pcbi.1007168.s001 .

Chait, Remy P, Jakob Ruess, Tobias Bergmiller, Gasper Tkadik, and Calin C Guet. “Shaping Bacterial Population Behavior through Computer Interfaced Control of Individual Cells.”https://doi.org/10.1038/s41467-017-01683-1__Nature Communications. Nature Publishing Group, 2017.https://doi.org/10.1038/s41467-017-01683-1 .

Schilling, Christian, Sergiy Bogomolov, Thomas A Henzinger, Andreas Podelski, and Jakob Ruess. “Adaptive Moment Closure for Parameter Inference of Biochemical Reaction Networks.”https://doi.org/10.1016/j.biosystems.2016.07.005__Biosystems. Elsevier, 2016.https://doi.org/10.1016/j.biosystems.2016.07.005 .

Parise, Francesca, John Lygeros, and Jakob Ruess. “Bayesian Inference for Stochastic Individual-Based Models of Ecological Systems: A Pest Control Simulation Study.”https://doi.org/10.3389/fenvs.2015.00042__Frontiers in Environmental Science. Frontiers, 2015.https://doi.org/10.3389/fenvs.2015.00042 .

Ruess, Jakob. “Minimal Moment Equations for Stochastic Models of Biochemical Reaction Networks with Partially Finite State Space.”https://doi.org/10.1063/1.4937937__Journal of Chemical Physics. American Institute of Physics, 2015.https://doi.org/10.1063/1.4937937 .

Ruess, Jakob, Francesca Parise, Andreas Milias Argeitis, Mustafa Khammash, and John Lygeros. “Iterative Experiment Design Guides the Characterization of a Light-Inducible Gene Expression Circuit.”https://doi.org/10.1073/pnas.1423947112__PNAS. National Academy of Sciences, 2015.https://doi.org/10.1073/pnas.1423947112 .

Bogomolov, Sergiy, Thomas A Henzinger, Andreas Podelski, Jakob Ruess, and Christian Schilling. “Adaptive Moment Closure for Parameter Inference of Biochemical Reaction Networks.”https://doi.org/10.1007/978-3-319-23401-4_8__Lecture Notes in Computer Science. Springer, 2015.https://doi.org/10.1007/978-3-319-23401-4_8 .

Ruess, Jakob, and John Lygeros. “Moment-Based Methods for Parameter Inference and Experiment Design for Stochastic Biochemical Reaction Networks.”https://doi.org/10.1145/2688906__ACM Transactions on Modeling and Computer Simulation. ACM, 2015.https://doi.org/10.1145/2688906 .