A hybrid pathway for self-sustained luminescence
K.A. Palkina, T.A. Karataeva, M.M. Perfilov, L.I. Fakhranurova, N.M. Markina, L. Gonzalez Somermeyer, E. Garcia-Perez, M. Vazquez-Vilar, M. Rodriguez-Rodriguez, V. Vazquez-Vilriales, E.S. Shakhova, T. Mitiouchkina, O.A. Belozerova, S.I. Kovalchuk, A. Alekberova, A.K. Malyshevskaia, E.N. Bugaeva, E.B. Guglya, A. Balakireva, N. Sytov, A. Bezlikhotnova, D.I. Boldyreva, V.V. Babenko, F. Kondrashov, V.V. Choob, D. Orzaez, I.V. Yampolsky, A.S. Mishin, K.S. Sarkisyan, Science Advances 10 (2024).
LibreCat: https://research-explorer.ista.ac.at/record/15179
DOI: 10.1126/sciadv.adk1992

Discovery of recessive effect of human polymerase ;4 proofreading deficiency through mutational analysis of POL-mutated normal and cancer cells
M.A. Andrianova, V.B. Seplyarskiy, M. Terradas, A.B. Sánchez-Heras, P. Mur, J.L. Soto, G. Aiza, E. Borràs, F. Kondrashov, A.S. Kondrashov, G.A. Bazykin, L. Valle, European Journal of Human Genetics (2024).
LibreCat: https://research-explorer.ista.ac.at/record/15362
DOI: 10.1038/s41431-024-01598-8
PMID: 38658779

Using AlphaFold to predict the impact of single mutations on protein stability and function
M.A. Pak, K.A. Markhieva, M.S. Novikova, D.S. Petrov, I.S. Vorobyev, E. Maksimova, F. Kondrashov, D.N. Ivankov, PLoS ONE 18 (2023).
LibreCat: https://research-explorer.ista.ac.at/record/12758
DOI: 10.1371/journal.pone.0282689
WoS: 000985134400106

Divergent molecular signatures in fish Bouncer proteins define cross-fertilization boundaries
K.R.B. Gert, K. Panser, J. Surm, B.S. Steinmetz, A. Schleiffer, L. Jovine, Y. Moran, F. Kondrashov, A. Pauli, Nature Communications 14 (2023).
LibreCat: https://research-explorer.ista.ac.at/record/13164
DOI: 10.1038/s41467-023-39317-4
WoS: 001048208600023

Scientists without borders: Lessons from Ukraine
W. Wolfsberger, K. Chhugani, K. Shchubelka, A. Frolova, Y. Salyha, O. Zlenko, M. Arych, D. Dziuba, A. Parkhomenko, V. Smolanka, Z.H. Gümüf, E. Sezgin, A. Diaz-Lameiro, V.R. Toth, M. Maci, E. Bortz, F. Kondrashov, P.M. Morton, P.P. abaj, V. Romero, J. Hlávka, S. Mangul, T.K. Oleksyk, GigaScience 12 (2023).
LibreCat: https://research-explorer.ista.ac.at/record/13976
DOI: 10.1093/gigascience/giad045
WoS: 001081086100001
PMID: 37496156

Complex vaccination strategies prevent the emergence of vaccine resistance
S. Rella, Y. Kulikova, A. Minnegalieva, F. Kondrashov, in:, European Journal of Public Health, Oxford University Press, 2023.
LibreCat: https://research-explorer.ista.ac.at/record/14862
DOI: 10.1093/eurpub/ckad160.597

Unlocking capacities of genomics for the COVID-19 response and future pandemics
S. Knyazev, K. Chhugani, V. Sarwal, R. Ayyala, H. Singh, S. Karthikeyan, D. Deshpande, P.I. Baykal, Z. Comarova, A. Lu, Y. Porozov, T.I. Vasylyeva, J.O. Wertheim, B.T. Tierney, C.Y. Chiu, R. Sun, A. Wu, M.S. Abedalthagafi, V.M. Pak, S.H. Nagaraj, A.L. Smith, P. Skums, B. Pasaniuc, A. Komissarov, C.E. Mason, E. Bortz, P. Lemey, F. Kondrashov, N. Beerenwinkel, T.T.Y. Lam, N.C. Wu, A. Zelikovsky, R. Knight, K.A. Crandall, S. Mangul, Nature Methods 19 (2022) 374–380.
LibreCat: https://research-explorer.ista.ac.at/record/11187
DOI: 10.1038/s41592-022-01444-z
WoS: 000781199600011
PMID: 35396471

Chromosome-encoded IpaH ubiquitin ligases indicate non-human enteroinvasive Escherichia
N. Dranenko, M. Tutukina, M. Gelfand, F. Kondrashov, O. Bochkareva, Scientific Reports 12 (2022).
LibreCat: https://research-explorer.ista.ac.at/record/11344
DOI: 10.1038/s41598-022-10827-3
WoS: 000788639400032
PMID: 35477739

Heterogeneity of the GFP fitness landscape and data-driven protein design
L. Gonzalez Somermeyer, A. Fleiss, A.S. Mishin, N.G. Bozhanova, A.A. Igolkina, J. Meiler, M.-E. Alaball Pujol, E.V. Putintseva, K.S. Sarkisyan, F. Kondrashov, ELife 11 (2022).
LibreCat: https://research-explorer.ista.ac.at/record/11448
DOI: 10.7554/elife.75842
WoS: 000799197200001

Relation between the number of peaks and the number of reciprocal sign epistatic interactions
R.J. Saona Urmeneta, F. Kondrashov, K. Khudiakova, Bulletin of Mathematical Biology 84 (2022).
LibreCat: https://research-explorer.ista.ac.at/record/11447
DOI: 10.1007/s11538-022-01029-z
WoS: 000812509800001

Remote opportunities for scholars in Ukraine
K. Chhugani, A. Frolova, Y. Salyha, A. Fiscutean, O. Zlenko, S. Reinsone, W.W. Wolfsberger, O.V. Ivashchenko, M. Maci, D. Dziuba, A. Parkhomenko, E. Bortz, F. Kondrashov, P.P. abaj, V. Romero, J. Hlávka, T.K. Oleksyk, S. Mangul, Science 378 (2022) 1285–1286.
LibreCat: https://research-explorer.ista.ac.at/record/12116
DOI: 10.1126/science.adg0797
WoS: 000963463700023

The limits of normal approximation for adult height
S.A. Slavskii, I.A. Kuznetsov, T.I. Shashkova, G.A. Bazykin, T.I. Axenovich, F. Kondrashov, Y.S. Aulchenko, European Journal of Human Genetics 29 (2021) 1082–1091.
LibreCat: https://research-explorer.ista.ac.at/record/9910
DOI: 10.1038/s41431-021-00836-7
WoS: 000625853200001
PMID: 33664501

Rates of SARS-CoV-2 transmission and vaccination impact the fate of vaccine-resistant strains
S. Rella, Y.A. Kulikova, E.T. Dermitzakis, F. Kondrashov, Scientific Reports 11 (2021).
LibreCat: https://research-explorer.ista.ac.at/record/9905
DOI: 10.1038/s41598-021-95025-3
WoS: 000683329100001
PMID: 34330988

Core Project Proceedings
M. Maslov, F. Kondrashov, C. Artner, M. Hennessey-Wesen, B. Kavcic, N.N. Machnik, R.K. Satapathy, I. Tomanek, Core Project Proceedings, IST Austria, 2020.
LibreCat: https://research-explorer.ista.ac.at/record/8151

A method for identification of the methylation level of CpG islands from NGS data
L.A. Uroshlev, E.T. Abdullaev, I.R. Umarova, I.A. Il’Icheva, L.A. Panchenko, R.V. Polozov, F. Kondrashov, Y.D. Nechipurenko, S.L. Grokhovsky, Scientific Reports 10 (2020).
LibreCat: https://research-explorer.ista.ac.at/record/7931
DOI: 10.1038/s41598-020-65406-1
WoS: 000560774200007

HypercubeME: Two hundred million combinatorially complete datasets from a single experiment
L.A. Esteban, L.R. Lonishin, D.M. Bobrovskiy, G. Leleytner, N.S. Bogatyreva, F. Kondrashov, D.N. Ivankov, Bioinformatics 36 (2020) 1960–1962.
LibreCat: https://research-explorer.ista.ac.at/record/8645
DOI: 10.1093/bioinformatics/btz841
WoS: 000538696800054
PMID: 31742320

Plants with genetically encoded autoluminescence
T. Mitiouchkina, A.S. Mishin, L. Gonzalez Somermeyer, N.M. Markina, T.V. Chepurnyh, E.B. Guglya, T.A. Karataeva, K.A. Palkina, E.S. Shakhova, L.I. Fakhranurova, S.V. Chekova, A.S. Tsarkova, Y.V. Golubev, V.V. Negrebetsky, S.A. Dolgushin, P.V. Shalaev, D. Shlykov, O.A. Melnik, V.O. Shipunova, S.M. Deyev, A.I. Bubyrev, A.S. Pushin, V.V. Choob, S.V. Dolgov, F. Kondrashov, I.V. Yampolsky, K.S. Sarkisyan, Nature Biotechnology 38 (2020) 944–946.
LibreCat: https://research-explorer.ista.ac.at/record/7889
DOI: 10.1038/s41587-020-0500-9
WoS: 000529298800003
PMID: 32341562

An experimental assay of the interactions of amino acids from orthologous sequences shaping a complex fitness landscape
V. Pokusaeva, D.R. Usmanova, E.V. Putintseva, L. Espinar, K. Sarkisyan, A.S. Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, S. Avvakumov, I.S. Povolotskaya, G.J. Filion, L.B. Carey, F. Kondrashov, PLoS Genetics 15 (2019).
LibreCat: https://research-explorer.ista.ac.at/record/6419
DOI: 10.1371/journal.pgen.1008079
WoS: 000466866000029

A statistical summary of segment libraries and sequencing results
V. Pokusaeva, D.R. Usmanova, E.V. Putintseva, L. Espinar, K. Sarkisyan, A.S. Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, S. Avvakumov, I.S. Povolotskaya, G.J. Filion, L.B. Carey, F. Kondrashov, (2019).
LibreCat: https://research-explorer.ista.ac.at/record/9790
DOI: 10.1371/journal.pgen.1008079.s011

A statistical summary of segment libraries and sequencing results
V. Pokusaeva, D.R. Usmanova, E.V. Putintseva, L. Espinar, K. Sarkisyan, A.S. Mishin, N.S. Bogatyreva, D. Ivankov, A. Akopyan, I.S. Povolotskaya, G.J. Filion, L.B. Carey, F. Kondrashov, (2019).
LibreCat: https://research-explorer.ista.ac.at/record/9797
DOI: 10.1371/journal.pgen.1008079.s011