Lagator M, Sarikas S, Steinrueck M, Toledo-Aparicio D, Bollback JP, Guet CC, Tkadik G. 2022. Predicting bacterial promoter function and evolution from random sequences. eLife. 11, e64543.
LibreCat: https://research-explorer.ista.ac.at/record/10736
DOI: 10.7554/eLife.64543
WoS: 000751104400001
PMID: 35080492

Tomanek I, Grah R, Lagator M, Andersson AMC, Bollback JP, Tkadik G, Guet CC. 2020. Gene amplification as a form of population-level gene expression regulation. Nature Ecology &; Evolution. 4(4), 612–625.
LibreCat: https://research-explorer.ista.ac.at/record/7652
DOI: 10.1038/s41559-020-1132-7
WoS: 000519008300005

Payne P, Geyrhofer L, Barton NH, Bollback JP. 2018. CRISPR-based herd immunity can limit phage epidemics in bacterial populations. eLife. 7, e32035.
LibreCat: https://research-explorer.ista.ac.at/record/423
DOI: 10.7554/eLife.32035
WoS: 000431035800001

Payne P, Geyrhofer L, Barton NH, Bollback JP. 2018. Data from: CRISPR-based herd immunity limits phage epidemics in bacterial populations, Dryad,10.5061/dryad.42n44 .
LibreCat: https://research-explorer.ista.ac.at/record/9840
DOI: 10.5061/dryad.42n44

Igler C, Lagator M, Tkadik G, Bollback JP, Guet CC. 2018. Evolutionary potential of transcription factors for gene regulatory rewiring. Nature Ecology and Evolution. 2(10), 1633–1643.
LibreCat: https://research-explorer.ista.ac.at/record/67
DOI: 10.1038/s41559-018-0651-y
WoS: 000447947600021

Igler C, Lagator M, Tkadik G, Bollback JP, Guet CC. 2018. Data for the paper Evolutionary potential of transcription factors for gene regulatory rewiring, Institute of Science and Technology Austria,10.15479/AT:ISTA:108 .
LibreCat: https://research-explorer.ista.ac.at/record/5585
DOI: 10.15479/AT:ISTA:108

Lagator M, Sarikas S, Acar H, Bollback JP, Guet CC. 2017. Regulatory network structure determines patterns of intermolecular epistasis. eLife. 6, e28921.
LibreCat: https://research-explorer.ista.ac.at/record/570
DOI: 10.7554/eLife.28921

Fernandes Redondo RA, de Vladar H, Wodarski T, Bollback JP. 2017. Evolutionary interplay between structure, energy and epistasis in the coat protein of the =54 phage family. Journal of the Royal Society Interface. 14(126), 20160139.
LibreCat: https://research-explorer.ista.ac.at/record/1077
DOI: 10.1098/rsif.2016.0139
WoS: 000393380400001

Lagator M, Paixao T, Barton NH, Bollback JP, Guet CC. 2017. On the mechanistic nature of epistasis in a canonical cis-regulatory element. eLife. 6, e25192.
LibreCat: https://research-explorer.ista.ac.at/record/954
DOI: 10.7554/eLife.25192
WoS: 000404024800001

Lagator M, Igler C, Moreno A, Guet CC, Bollback JP. 2016. Epistatic interactions in the arabinose cis-regulatory element. Molecular Biology and Evolution. 33(3), 761–769.
LibreCat: https://research-explorer.ista.ac.at/record/1427
DOI: 10.1093/molbev/msv269

Fernandes Redondo RA, de Vladar H, Wodarski T, Bollback JP. 2016. Data from evolutionary interplay between structure, energy and epistasis in the coat protein of the =54 phage family, The Royal Society,10.6084/m9.figshare.4315652.v1 .
LibreCat: https://research-explorer.ista.ac.at/record/9864
DOI: 10.6084/m9.figshare.4315652.v1

Kupczok A, Bollback JP. 2014. Motif depletion in bacteriophages infecting hosts with CRISPR systems. BMC Genomics. 15(1), 663.
LibreCat: https://research-explorer.ista.ac.at/record/2042
DOI: 10.1186/1471-2164-15-663

Kupczok A, Bollback JP. 2013. Probabilistic models for CRISPR spacer content evolution . BMC Evolutionary Biology. 13(1), 54–54.
LibreCat: https://research-explorer.ista.ac.at/record/2412
DOI: 10.1186/1471-2148-13-54

Fernandes Redondo RA, Kupczok A, Stift G, Bollback JP. 2013. Complete genome sequence of the novel phage MG- infecting bacillus weihenstephanensis. Genome Announcements. 1(3).
LibreCat: https://research-explorer.ista.ac.at/record/2410
DOI: 10.1128/genomeA.00216-13

Ward M, Lycett S, Avila D, Bollback JP, Leigh Brown A. 2013. Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza. BMC Evolutionary Biology. 13(1), 222.
LibreCat: https://research-explorer.ista.ac.at/record/500
DOI: 10.1186/1471-2148-13-222

Guinane C, Ben Zakour N, Tormo Mas M, Weinert L, Lowder B, Cartwright R, Smyth D, Smyth C, Lindsay J, Gould K, Witney A, Hinds J, Bollback JP, Rambaut A, Penades J, Fitzgerald JR. 2010. Evolutionary genomics of Staphylococcus aureus reveals insights into the origin and molecular basis of ruminant host adaptation. Genome Biology and Evolution. 2, 454–466.
LibreCat: https://research-explorer.ista.ac.at/record/4358
DOI: 10.1093/gbe/evq031

Bollback JP, Huelsenbeck J. 2009. Parallel genetic evolution within and between bacteriophage species of varying degrees of divergence. Genetics. 181(1), 225–234.
LibreCat: https://research-explorer.ista.ac.at/record/4357
DOI: 10.1534/genetics.107.085225

Bollback JP, York T, Nielsen R. 2008. Estimation of 2Nes From Temporal Allele Frequency Data. Genetics. 179(1), 497–502.
LibreCat: https://research-explorer.ista.ac.at/record/3435
DOI: 10.1534/genetics.107.085019

Binladen J, Gilbert MT, Bollback JP, Panitz F, Bendixen C, Nielsen R, Willerslev E. 2007. The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing. PLoS One. 2(2).
LibreCat: https://research-explorer.ista.ac.at/record/4353
DOI: 10.1371/journal.pone.0000197

Petersen L, Bollback JP, Dimmic M, Hubisz M, Nielsen R. 2007. Genes under positive selection in Escherichia coli. Genome Research. 17(9), 1336–1343.
LibreCat: https://research-explorer.ista.ac.at/record/4356
DOI: 10.1101/gr.6254707