Oliveto, Pietro, Tiago Paixao, Jorge Pérez Heredia, Dirk Sudholt, and Barbora Trubenova. “How to Escape Local Optima in Black Box Optimisation When Non Elitism Outperforms Elitism.”https://doi.org/10.1007/s00453-017-0369-2__Algorithmica. Springer, 2018.https://doi.org/10.1007/s00453-017-0369-2 .

Paixao, Tiago, and Jorge Pérez Heredia. “An Application of Stochastic Differential Equations to Evolutionary Algorithms.”https://doi.org/10.1145/3040718.3040729__In Proceedings of the 14th ACM/SIGEVO Conference on Foundations of Genetic Algorithms, 3–11. ACM, 2017.https://doi.org/10.1145/3040718.3040729 .

Lukacisinova, Marta, Sebastian Novak, and Tiago Paixao. “Modelling and Simulation Details.”https://doi.org/10.1371/journal.pcbi.1005609.s001__Public Library of Science, 2017.https://doi.org/10.1371/journal.pcbi.1005609.s001 .

Lukacisinova, Marta, Sebastian Novak, and Tiago Paixao. “Extensions of the Model.”https://doi.org/10.1371/journal.pcbi.1005609.s002__Public Library of Science, 2017.https://doi.org/10.1371/journal.pcbi.1005609.s002 .

Lukacisinova, Marta, Sebastian Novak, and Tiago Paixao. “Heuristic Prediction for Multiple Stresses.”https://doi.org/10.1371/journal.pcbi.1005609.s003__Public Library of Science, 2017.https://doi.org/10.1371/journal.pcbi.1005609.s003 .

Lukacisinova, Marta, Sebastian Novak, and Tiago Paixao. “Resistance Frequencies for Different Combination Strategies.”https://doi.org/10.1371/journal.pcbi.1005609.s004__Public Library of Science, 2017.https://doi.org/10.1371/journal.pcbi.1005609.s004 .

Giacobbe, Mirco, Calin C Guet, Ashutosh Gupta, Thomas A Henzinger, Tiago Paixao, and Tatjana Petrov. “Model Checking the Evolution of Gene Regulatory Networks.”https://doi.org/10.1007/s00236-016-0278-x__Acta Informatica. Springer, 2017.https://doi.org/10.1007/s00236-016-0278-x .

Paixao, Tiago, Jorge Pérez Heredia, Dirk Sudholt, and Barbora Trubenova. “Towards a Runtime Comparison of Natural and Artificial Evolution.”https://doi.org/10.1007/s00453-016-0212-1__Algorithmica. Springer, 2017.https://doi.org/10.1007/s00453-016-0212-1 .

Heredia, Jorge, Barbora Trubenova, Dirk Sudholt, and Tiago Paixao. “Selection Limits to Adaptive Walks on Correlated Landscapes.”https://doi.org/10.1534/genetics.116.189340__Genetics. Genetics Society of America, 2017.https://doi.org/10.1534/genetics.116.189340 .

Lagator, Mato, Tiago Paixao, Nicholas H Barton, Jonathan P Bollback, and Calin C Guet. “On the Mechanistic Nature of Epistasis in a Canonical Cis-Regulatory Element.”https://doi.org/10.7554/eLife.25192__ELife. eLife Sciences Publications, 2017.https://doi.org/10.7554/eLife.25192 .

Lukacisinova, Marta, Sebastian Novak, and Tiago Paixao. “Stress Induced Mutagenesis: Stress Diversity Facilitates the Persistence of Mutator Genes.”https://doi.org/10.1371/journal.pcbi.1005609__PLoS Computational Biology. Public Library of Science, 2017.https://doi.org/10.1371/journal.pcbi.1005609 .

Oliveto, Pietro, Tiago Paixao, Jorge Heredia, Dirk Sudholt, and Barbora Trubenova. “When Non-Elitism Outperforms Elitism for Crossing Fitness Valleys.”https://doi.org/10.1145/2908812.2908909__In Proceedings of the Genetic and Evolutionary Computation Conference 2016 , 1163–70. ACM, 2016.https://doi.org/10.1145/2908812.2908909 .

Paixao, Tiago, and Nicholas H Barton. “The Effect of Gene Interactions on the Long-Term Response to Selection.”https://doi.org/10.1073/pnas.1518830113__PNAS. National Academy of Sciences, 2016.https://doi.org/10.1073/pnas.1518830113 .

Paixao, Tiago, Dirk Sudholt, Jorge Heredia, and Barbora Trubenova. “First Steps towards a Runtime Comparison of Natural and Artificial Evolution.”https://doi.org/10.1145/2739480.2754758__In Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation, 1455–62. ACM, 2015.https://doi.org/10.1145/2739480.2754758 .

Paixao, Tiago, Golnaz Badkobeh, Nicholas H Barton, Dofan Çörüf, Duccuong Dang, Tobias Friedrich, Per Lehre, Dirk Sudholt, Andrew Sutton, and Barbora Trubenova. “Toward a Unifying Framework for Evolutionary Processes.”https://doi.org/10.1016/j.jtbi.2015.07.011__https://doi.org/10.1016/j.jtbi.2015.07.011__Journal of Theoretical Biology. Elsevier, 2015.https://doi.org/10.1016/j.jtbi.2015.07.011 .

Tugrul, Murat, Tiago Paixao, Nicholas H Barton, and Gasper Tkadik. “Other Fitness Models for Comparison &; for Interacting TFBSs.”https://doi.org/10.1371/journal.pgen.1005639.s001__Public Library of Science, 2015.https://doi.org/10.1371/journal.pgen.1005639.s001 .

Tugrul, Murat, Tiago Paixao, Nicholas H Barton, and Gasper Tkadik. “Dynamics of Transcription Factor Binding Site Evolution.”https://doi.org/10.1371/journal.pgen.1005639__PLoS Genetics. Public Library of Science, 2015.https://doi.org/10.1371/journal.pgen.1005639 .

Giacobbe, Mirco, Calin C Guet, Ashutosh Gupta, Thomas A Henzinger, Tiago Paixao, and Tatjana Petrov. “Model Checking Gene Regulatory Networks.”https://doi.org/10.1007/978-3-662-46681-0_47__Lecture Notes in Computer Science. Springer, 2015.https://doi.org/10.1007/978-3-662-46681-0_47 .

Barton, Nicholas H, Sebastian Novak, and Tiago Paixao. “Diverse Forms of Selection in Evolution and Computer Science.”https://doi.org/10.1073/pnas.1410107111__PNAS. National Academy of Sciences, 2014.https://doi.org/10.1073/pnas.1410107111 .

Phadke, Sujal, Tiago Paixao, Tuan Pham, Stephanie Pham, and Rebecca Zufall. “Genetic Background Alters Dominance Relationships between Mat Alleles in the Ciliate Tetrahymena Thermophila.”https://doi.org/10.1093/jhered/est063__Journal of Heredity. Oxford University Press, 2014.https://doi.org/10.1093/jhered/est063 .