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von Wangenheim, D., Hauschild, R., &; Friml, J. (2017). Light Sheet Fluorescence microscopy of plant roots growing on the surface of a gel. Institute of Science and Technology Austria.https://doi.org/10.15479/AT:ISTA:66 

Hauschild, R. (2017). Live tracking of moving samples in confocal microscopy for vertically grown roots. Institute of Science and Technology Austria.https://doi.org/10.15479/AT:ISTA:69 

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Acar, H. (2016). Selective barriers to horizontal gene transfer. Institute of Science and Technology Austria.

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Rieckh, G. (2016). Studying the complexities of transcriptional regulation. Institute of Science and Technology Austria.

Morri, M. (2016). Optical functionalization of human class A orphan G-protein coupled receptors. Institute of Science and Technology Austria.

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Mabillard, I. (2016). Eliminating higher-multiplicity intersections: an r-fold Whitney trick for the topological Tverberg conjecture. Institute of Science and Technology Austria.

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Mishra, R. K. (2016). Synaptic plasticity rules at C-C recurrent synapses in hippocampus. Institute of Science and Technology Austria.

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Pentina, A., Sharmanska, V., &; Lampert, C. (2015). Curriculum learning of multiple tasks (pp. 5492–5500). Presented at the CVPR: Computer Vision and Pattern Recognition, Boston, MA, United States: IEEE.https://doi.org/10.1109/CVPR.2015.7299188 

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Chatterjee, K., &; Chmelik, M. (2015). POMDPs under probabilistic semantics. Artificial Intelligence. Elsevier.https://doi.org/10.1016/j.artint.2014.12.009 

Kremer, A., Lippens, S., Bartunkova, S., Asselbergh, B., Blanpain, C., Fendrych, M.,https://doi.org/10.1111/jmi.12211__Guérin, C. (2015). Developing 3D SEM in a broad biological context. Journal of Microscopy. Wiley-Blackwell.https://doi.org/10.1111/jmi.12211 

Könenberg, M., Moser, T., Seiringer, R., &; Yngvason, J. (2015). Superfluid behavior of a Bose-Einstein condensate in a random potential. New Journal of Physics. IOP Publishing Ltd.https://doi.org/10.1088/1367-2630/17/1/013022 

Fahrenberg, U., Kretinsky, J., Legay, A., &; Traonouez, L. (2015). Compositionality for quantitative specifications (Vol. 8997, pp. 306–324). Presented at the FACS: Formal Aspects of Component Software, Bertinoro, Italy: Springer.https://doi.org/10.1007/978-3-319-15317-9_19 

Keller-Schmidt, S., Tugrul, M., Eguíluz, V., Hernandez Garcia, E., &; Klemm, K. (2015). Anomalous scaling in an age-dependent branching model. Physical Review E Statistical Nonlinear and Soft Matter Physics. American Institute of Physics.https://doi.org/10.1103/PhysRevE.91.022803 

Tkadik, G., Dubuis, J., Petkova, M., &; Gregor, T. (2015). Positional information, positional error, and readout precision in morphogenesis: A mathematical framework. Genetics. Genetics Society of America.https://doi.org/10.1534/genetics.114.171850 

Sokolowski, T. R., &; Tkadik, G. (2015). Optimizing information flow in small genetic networks. IV. Spatial coupling. Physical Review E Statistical Nonlinear and Soft Matter Physics. American Institute of Physics.https://doi.org/10.1103/PhysRevE.91.062710 

Gupta, A., Henzinger, T. A., Radhakrishna, A., Samanta, R., &; Tarrach, T. (2015). Succinct representation of concurrent trace sets (pp. 433–444). Presented at the POPL: Principles of Programming Languages, Mumbai, India: ACM.https://doi.org/10.1145/2676726.2677008 

Noren, P. (2015). The three-state toric homogeneous Markov chain model has Markov degree two. Journal of Symbolic Computation. Elsevier.https://doi.org/10.1016/j.jsc.2014.09.014 

Klimova, A., &; Rudas, T. (2015). Iterative scaling in curved exponential families. Scandinavian Journal of Statistics. Wiley.https://doi.org/10.1111/sjos.12139 

Hein, N., Hillar, C., Martin del Campo Sanchez, A., Sottile, F., &; Teitler, Z. (2015). The monotone secant conjecture in the real Schubert calculus. Experimental Mathematics. Taylor &; Francis.https://doi.org/10.1080/10586458.2014.980044 

Klimova, A., Uhler, C., &; Rudas, T. (2015). Faithfulness and learning hypergraphs from discrete distributions. Computational Statistics &; Data Analysis. Elsevier.https://doi.org/10.1016/j.csda.2015.01.017 

Kawada, D., Kobayashi, H., Tomita, T., Nakata, E., Nagano, M., Siekhaus, D. E.,https://doi.org/10.1016/j.bbamcr.2014.10.009__Toshimaa, J. (2015). The yeast Arf-GAP Glo3p is required for the endocytic recycling of cell surface proteins. Biochimica et Biophysica Acta - Molecular Cell Research. Elsevier.https://doi.org/10.1016/j.bbamcr.2014.10.009 

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Bérard, B., Chatterjee, K., &; Sznajder, N. (2015). Probabilistic opacity for Markov decision processes. https://doi.org/10.1016/j.ipl.2014.09.001__Information Processing Letters. Elsevier.https://doi.org/10.1016/j.ipl.2014.09.001 

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Erdös, L., &; Knowles, A. (2015). The Altshuler-Shklovskii formulas for random band matrices I: the unimodular case. Communications in Mathematical Physics. Springer.https://doi.org/10.1007/s00220-014-2119-5 

Chakraborty, S., Henzinger, T. A., Sezgin, A., &; Vafeiadis, V. (2015). Aspect-oriented linearizability proofs. Logical Methods in Computer Science. International Federation of Computational Logic.https://doi.org/10.2168/LMCS-11(1:20)2015 

Kolmogorov, V., Thapper, J., &; divný, S. (2015). The power of linear programming for general-valued CSPs. SIAM Journal on Computing. SIAM.https://doi.org/10.1137/130945648 

Chatterjee, K., Joglekar, M., &; Shah, N. (2015). Average case analysis of the classical algorithm for Markov decision processes with Büchi objectives. Theoretical Computer Science. Elsevier.https://doi.org/10.1016/j.tcs.2015.01.050 

Chatterjee, K., Doyen, L., Gimbert, H., &; Henzinger, T. A. (2015). Randomness for free. Information and Computation. Elsevier.https://doi.org/10.1016/j.ic.2015.06.003 

Chatterjee, K., Henzinger, T. A., Jobstmann, B., &; Singh, R. (2015). Measuring and synthesizing systems in probabilistic environments. Journal of the ACM. ACM.https://doi.org/10.1145/2699430 

Chatterjee, K., Henzinger, M. H., &; Loitzenbauer, V. (2015). Improved algorithms for one-pair and k-pair Streett objectives. In Proceedings - Symposium on Logic in Computer Science (Vol. 2015–July). Kyoto, Japan: IEEE.https://doi.org/10.1109/LICS.2015.34 

Lewin, M., Nam, P., &; Rougerie, N. (2015). Derivation of nonlinear gibbs measures from many-body quantum mechanics. Journal de l’Ecole Polytechnique - Mathematiques. Ecole Polytechnique.https://doi.org/10.5802/jep.18 

Chatterjee, K., Doyen, L., Randour, M., &; Raskin, J. (2015). Looking at mean-payoff and total-payoff through windows. Information and Computation. Elsevier.https://doi.org/10.1016/j.ic.2015.03.010 

Chatterjee, K., &; Ibsen-Jensen, R. (2015). Qualitative analysis of concurrent mean payoff games. Information and Computation. Elsevier.https://doi.org/10.1016/j.ic.2015.03.009 

Ahmed, U., Chatterjee, K., &; Gulwani, S. (2015). Automatic generation of alternative starting positions for simple traditional board games. In Proceedings of the Twenty-Ninth AAAI Conference on Artificial Intelligence (Vol. 2, pp. 745–752). Austin, TX, USA: AAAI Press.

Chatterjee, K., Chmelik, M., Gupta, R., &; Kanodia, A. (2015). Qualitative analysis of POMDPs with temporal logic specifications for robotics applications (pp. 325–330). Presented at the ICRA: International Conference on Robotics and Automation, Seattle, WA, United States: IEEE.https://doi.org/10.1109/ICRA.2015.7139019 

Chatterjee, K., Ibsen-Jensen, R., &; Hansen, K. (2015). The patience of concurrent stochastic games with safety and reachability objectives. IST Austria.https://doi.org/10.15479/AT:IST-2015-322-v1-1 

Anonymous, 1, &; Anonymous, 2. (2015). Optimal cost indefinite-horizon reachability in goal DEC-POMDPs. IST Austria.

Chatterjee, K., Komarkova, Z., &; Kretinsky, J. (2015). Unifying two views on multiple mean-payoff objectives in Markov decision processes. IST Austria.https://doi.org/10.15479/AT:IST-2015-318-v1-1 

Chatterjee, K., Komarkova, Z., &; Kretinsky, J. (2015). Unifying two views on multiple mean-payoff objectives in Markov decision processes. IST Austria.https://doi.org/10.15479/AT:IST-2015-318-v2-1 

Chatterjee, K., Henzinger, T. A., &; Otop, J. (2015). Nested weighted automata. IST Austria.https://doi.org/10.15479/AT:IST-2015-170-v2-2 

Boker, U., Henzinger, T. A., &; Otop, J. (2015). The target discounted-sum problem. In LICS (pp. 750–761). Kyoto, Japan: IEEE.https://doi.org/10.1109/LICS.2015.74 

Chatterjee, K., Henzinger, T. A., Ibsen-Jensen, R., &; Otop, J. (2015). Edit distance for pushdown automata. In 42nd International Colloquium (Vol. 9135, pp. 121–133). Kyoto, Japan: Springer Nature.https://doi.org/10.1007/978-3-662-47666-6_10 

Chatterjee, K., Ibsen-Jensen, R., &; Pavlogiannis, A. (2015). Faster algorithms for quantitative verification in constant treewidth graphs. IST Austria.https://doi.org/10.15479/AT:IST-2015-330-v2-1 

Chatterjee, K., Ibsen-Jensen, R., &; Pavlogiannis, A. (2015). Faster algorithms for quantitative verification in constant treewidth graphs. IST Austria.https://doi.org/10.15479/AT:IST-2015-319-v1-1 

Boker, U., Henzinger, T. A., &; Otop, J. (2015). The target discounted-sum problem. IST Austria.https://doi.org/10.15479/AT:IST-2015-335-v1-1 

Chatterjee, K., Henzinger, T. A., Ibsen-Jensen, R., &; Otop, J. (2015). Edit distance for pushdown automata. IST Austria.https://doi.org/10.15479/AT:IST-2015-334-v1-1 

Chatterjee, K., Ibsen-Jensen, R., &; Nowak, M. (2015). The complexity of evolutionary games on graphs. IST Austria.https://doi.org/10.15479/AT:IST-2015-323-v2-2 

Chatterjee, K., Ibsen-Jensen, R., &; Nowak, M. (2015). The complexity of evolutionary games on graphs. IST Austria.https://doi.org/10.15479/AT:IST-2015-323-v1-1 

Reiter, J., Makohon-Moore, A., Gerold, J., Bozic, I., Chatterjee, K., Iacobuzio-Donahue, C.,https://doi.org/10.15479/AT:IST-2015-399-v1-1__Nowak, M. (2015). Reconstructing robust phylogenies of metastatic cancers. IST Austria.https://doi.org/10.15479/AT:IST-2015-399-v1-1 

Chatterjee, K., Chmelik, M., &; Davies, J. (2015). A symbolic SAT-based algorithm for almost-sure reachability with small strategies in POMDPs. IST Austria.https://doi.org/10.15479/AT:IST-2015-325-v2-1 

Goaoc, X., Mabillard, I., Paták, P., Patakova, Z., Tancer, M., &; Wagner, U. (2015). On generalized Heawood inequalities for manifolds: A Van Kampen–Flores-type nonembeddability result (Vol. 34, pp. 476–490). Presented at the SoCG: Symposium on Computational Geometry, Eindhoven, Netherlands: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.https://doi.org/10.4230/LIPIcs.SOCG.2015.476 

Kolmogorov, V., Krokhin, A., &; Rolinek, M. (2015). The complexity of general-valued CSPs (pp. 1246–1258). Presented at the FOCS: Foundations of Computer Science, Berkeley, CA, United States: IEEE.https://doi.org/10.1109/FOCS.2015.80 

Mcmahon, D., Fürst, M., Caspar, J., Theodorou, P., Brown, M., &; Paxton, R. (2015). A sting in the spit: Widespread cross-infection of multiple RNA viruses across wild and managed bees. Journal of Animal Ecology. Wiley.https://doi.org/10.1111/1365-2656.12345 

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Symonova, O., Topp, C., &; Edelsbrunner, H. (2015). DynamicRoots: A software platform for the reconstruction and analysis of growing plant roots. PLoS One. Public Library of Science.https://doi.org/10.1371/journal.pone.0127657 

Friedlander, T., Mayo, A., Tlusty, T., &; Alon, U. (2015). Evolution of bow-tie architectures in biology. PLoS Computational Biology. Public Library of Science.https://doi.org/10.1371/journal.pcbi.1004055 

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Gómez Sicilia, À., Sikora, M. K., Cieplak, M., &; Carrión Vázquez, M. (2015). An exploration of the universe of polyglutamine structures. PLoS Computational Biology. Public Library of Science.https://doi.org/10.1371/journal.pcbi.1004541 

Konrad, M., Grasse, A. V., Tragust, S., &; Cremer, S. (2015). Anti-pathogen protection versus survival costs mediated by an ectosymbiont in an ant host. Proceedings of the Royal Society of London Series B Biological Sciences. The Royal Society.https://doi.org/10.1098/rspb.2014.1976 

Westhus, C., Ugelvig, L. V., Tourdot, E., Heinze, J., Doums, C., &; Cremer, S. (2015). Data from: Increased grooming after repeated brood care provides sanitary benefits in a clonal ant. Dryad.https://doi.org/10.5061/dryad.7kc79 

Veldkamp, C., Kiermaier, E., Gabel Eissens, S., Gillitzer, M., Lippner, D., Disilvio, F.,https://doi.org/10.1021/acs.biochem.5b00560__Peterson, F. (2015). Solution structure of CCL19 and identification of overlapping CC and PSGL-1 binding sites. Biochemistry. American Chemical Society.https://doi.org/10.1021/acs.biochem.5b00560 

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Wielgoss, S., Bergmiller, T., Bischofberger, A. M., &; Hall, A. R. (2015). Data from: Adaptation to parasites and costs of parasite resistance in mutator and non-mutator bacteria. Dryad.https://doi.org/10.5061/dryad.cj910 

Sharmanska, V. (2015). Learning with attributes for object recognition: Parametric and non-parametrics views. Institute of Science and Technology Austria.https://doi.org/10.15479/at:ista:1401 

Reiter, J., Kanodia, A., Gupta, R., Nowak, M., &; Chatterjee, K. (2015). Biological auctions with multiple rewards. Proceedings of the Royal Society of London Series B Biological Sciences. Royal Society.https://doi.org/10.1098/rspb.2015.1041 

Tugrul, M., Paixao, T., Barton, N. H., &; Tkadik, G. (2015). Dynamics of transcription factor binding site evolution. PLoS Genetics. Public Library of Science.https://doi.org/10.1371/journal.pgen.1005639 

Benes, N., Daca, P., Henzinger, T. A., Kretinsky, J., &; Nickovic, D. (2015). Complete composition operators for IOCO-testing theory (pp. 101–110). Presented at the CBSE: Component-Based Software Engineering , Montreal, QC, Canada: ACM.https://doi.org/10.1145/2737166.2737175 

Chatterjee, K., Chmelik, M., &; Daca, P. (2015). CEGAR for compositional analysis of qualitative properties in Markov decision processes. Formal Methods in System Design. Springer.https://doi.org/10.1007/s10703-015-0235-2 

Chatterjee, K., Ibsen-Jensen, R., Pavlogiannis, A., &; Goyal, P. (2015). Faster algorithms for algebraic path properties in recursive state machines with constant treewidth. ACM SIGPLAN Notices. Mumbai, India: ACM.https://doi.org/10.1145/2676726.2676979 

Chatterjee, K., Ibsen-Jensen, R., &; Pavlogiannis, A. (2015). Faster algorithms for quantitative verification in constant treewidth graphs (Vol. 9206, pp. 140–157). Presented at the CAV: Computer Aided Verification, San Francisco, CA, USA: Springer.https://doi.org/10.1007/978-3-319-21690-4_9 

Hahn, D., &; Wojtan, C. (2015). High-resolution brittle fracture simulation with boundary elements (Vol. 34). Presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, Los Angeles, CA, United States: ACM.https://doi.org/10.1145/2766896 

Ruprecht, V., Wieser, S., Callan Jones, A., Smutny, M., Morita, H., Sako, K.,https://doi.org/10.1016/j.cell.2015.01.008__Heisenberg, C.-P. J. (2015). Cortical contractility triggers a stochastic switch to fast amoeboid cell motility. Cell. Cell Press.https://doi.org/10.1016/j.cell.2015.01.008 

Adamowski, M., &; Friml, J. (2015). PIN-dependent auxin transport: Action, regulation, and evolution. Plant Cell. American Society of Plant Biologists.https://doi.org/10.1105/tpc.114.134874 

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Inglés Prieto, Á., Gschaider-Reichhart, E., Muellner, M., Nowak, M., Nijman, S., Grusch, M., &; Janovjak, H. L. (2015). Light-assisted small-molecule screening against protein kinases. Nature Chemical Biology. Nature Publishing Group.https://doi.org/10.1038/nchembio.1933 

Cepeda Humerez, S. A., Rieckh, G., &; Tkadik, G. (2015). Stochastic proofreading mechanism alleviates crosstalk in transcriptional regulation. Physical Review Letters. American Physical Society.https://doi.org/10.1103/PhysRevLett.115.248101 

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Chatterjee, K., Ibsen-Jensen, R., Goharshady, A. K., &; Pavlogiannis, A. (2015). Algorithms for algebraic path properties in concurrent systems of constant treewidth components. IST Austria.https://doi.org/10.15479/AT:IST-2015-340-v1-1 

Anonymous, 1, Anonymous, 2, Anonymous, 3, &; Anonymous, 4. (2015). Algorithms for algebraic path properties in concurrent systems of constant treewidth components. IST Austria.

Svoreová, M., Kretinsky, J., Chmelik, M., Chatterjee, K., Cbrná, I., &; Belta, C. (2015). Temporal logic control for stochastic linear systems using abstraction refinement of probabilistic games. In Proceedings of the 18th International Conference on Hybrid Systems: Computation and Control (pp. 259–268). Seattle, WA, United States: ACM.https://doi.org/10.1145/2728606.2728608 

Giacobbe, M., Guet, C. C., Gupta, A., Henzinger, T. A., Paixao, T., &; Petrov, T. (2015). Model checking gene regulatory networks. Presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, London, United Kingdom: Springer.https://doi.org/10.1007/978-3-662-46681-0_47 

Michalko, J., Lukacisinova, M., Bollenbach, M. T., &; Friml, J. (2015). Embryo-lethal phenotypes in early ab mutants are due to disruption of the neighboring BSM gene. 00 Research . 00 Research.https://doi.org/10.12688/f1000research.7143.1 

Priklopil, T., &; Chatterjee, K. (2015). Evolution of decisions in population games with sequentially searching individuals. Games. MDPI.https://doi.org/10.3390/g6040413 

Martius, G. S., &; Olbrich, E. (2015). Quantifying emergent behavior of autonomous robots. Entropy. MDPI.https://doi.org/10.3390/e17107266 

Chen, C., Wang, C., Zhao, X., Zhou, T., Xu, D., Wang, Z., &; Wang, Y. (2015). Low-dose sevoflurane promoteshippocampal neurogenesis and facilitates the development of dentate gyrus-dependent learning in neonatal rats. ASN Neuro. SAGE Publications.https://doi.org/10.1177/1759091415575845 

Erbar, M., Maas, J., &; Tetali, P. (2015). Discrete Ricci curvature bounds for Bernoulli-Laplace and random transposition models. Annales de La Faculté Des Sciences de Toulouse. Faculté des sciences de Toulouse.https://doi.org/10.5802/afst.1464 

Brázdil, T., Chatterjee, K., Chmelik, M., Fellner, A., &; Kretinsky, J. (2015). Counterexample explanation by learning small strategies in Markov decision processes (Vol. 9206, pp. 158–177). Presented at the CAV: Computer Aided Verification, San Francisco, CA, United States: Springer.https://doi.org/10.1007/978-3-319-21690-4_10 

Fellner, A. (2015). Experimental part of CAV 2015 publication: Counterexample Explanation by Learning Small Strategies in Markov Decision Processes. Institute of Science and Technology Austria.https://doi.org/10.15479/AT:ISTA:28 

Goaoc, X., Paták, P., Patakova, Z., Tancer, M., &; Wagner, U. (2015). Bounding Helly numbers via Betti numbers (Vol. 34, pp. 507–521). Presented at the SoCG: Symposium on Computational Geometry, Eindhoven, Netherlands: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.https://doi.org/10.4230/LIPIcs.SOCG.2015.507 

Dziembowski, S., Faust, S., Kolmogorov, V., &; Pietrzak, K. Z. (2015). Proofs of space. In 35th Annual Cryptology Conference (Vol. 9216, pp. 585–605). Santa Barbara, CA, United States: Springer.https://doi.org/10.1007/978-3-662-48000-7_29 

Chevereau, G., Lukacisinova, M., Batur, T., Guvenek, A., Ayhan, D., Toprak, E., &; Bollenbach, M. T. (2015). Quantifying the determinants of evolutionary dynamics leading to drug resistance. PLoS Biology. Public Library of Science.https://doi.org/10.1371/journal.pbio.1002299 

Hashimoto, M., Morita, H., &; Ueno, N. (2014). Molecular and cellular mechanisms of development underlying congenital diseases. Congenital Anomalies. Wiley.https://doi.org/10.1111/cga.12039 

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Chatterjee, K., Henzinger, M. H., Krinninger, S., Loitzenbauer, V., &; Raskin, M. (2014). Approximating the minimum cycle mean. Theoretical Computer Science. Elsevier.https://doi.org/10.1016/j.tcs.2014.06.031 

Dragoi, C., Henzinger, T. A., Veith, H., Widder, J., &; Zufferey, D. (2014). A logic-based framework for verifying consensus algorithms (Vol. 8318, pp. 161–181). Presented at the VMCAI: Verification, Model Checking and Abstract Interpretation, San Diego, USA: Springer.https://doi.org/10.1007/978-3-642-54013-4_10 

Gordon, A., Henzinger, T. A., Nori, A., &; Rajamani, S. (2014). Probabilistic programming. In Proceedings of the on Future of Software Engineering (pp. 167–181). Hyderabad, India: ACM.https://doi.org/10.1145/2593882.2593900 

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Chatterjee, K., Daca, P., &; Chmelik, M. (2014). CEGAR for qualitative analysis of probabilistic systems. IST Austria.https://doi.org/10.15479/AT:IST-2014-153-v2-2 

Chatterjee, K., Daca, P., &; Chmelik, M. (2014). CEGAR for qualitative analysis of probabilistic systems. IST Austria.https://doi.org/10.15479/AT:IST-2014-153-v3-1 

Chatterjee, K., Daca, P., &; Chmelik, M. (2014). CEGAR for qualitative analysis of probabilistic systems. IST Austria.https://doi.org/10.15479/AT:IST-2014-153-v1-1 

Chatterjee, K., &; Doyen, L. (2014). Games with a weak adversary. In Lecture Notes in Computer Science (Vol. 8573, pp. 110–121). Copenhagen, Denmark: Springer.https://doi.org/10.1007/978-3-662-43951-7_10 

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Henzinger, T. A., &; Otop, J. (2014). From model checking to model measuring. IST Austria.https://doi.org/10.15479/AT:IST-2014-172-v1-1 

Henzinger, T. A., &; Otop, J. (2014). Model measuring for hybrid systems. IST Austria.https://doi.org/10.15479/AT:IST-2014-171-v1-1 

Chatterjee, K., &; Doyen, L. (2014). Games with a weak adversary. IST Austria.https://doi.org/10.15479/AT:IST-2014-176-v1-1 

Chatterjee, K., &; Ibsen-Jensen, R. (2014). The value 1 problem for concurrent mean-payoff games. IST Austria.https://doi.org/10.15479/AT:IST-2014-191-v1-1 

Porsche, J. (2014). Notes from Research Data Alliance Plenary Meeting in Dublin, Ireland. none.

Chatterjee, K., Chmelik, M., Gupta, R., &; Kanodia, A. (2014). Qualitative analysis of POMDPs with temporal logic specifications for robotics applications. IST Austria.https://doi.org/10.15479/AT:IST-2014-305-v1-1 

Chatterjee, K., Chmelik, M., Gupta, R., &; Kanodia, A. (2014). Qualitative analysis of POMDPs with temporal logic specifications for robotics applications. IST Austria.https://doi.org/10.15479/AT:IST-2014-305-v2-1 

Chatterjee, K., Kössler, A., Pavlogiannis, A., &; Schmid, U. (2014). A framework for automated competitive analysis of on-line scheduling of firm-deadline tasks. IST Austria.https://doi.org/10.15479/AT:IST-2014-300-v1-1 

Chatterjee, K., Ibsen-Jensen, R., &; Pavlogiannis, A. (2014). Optimal tree-decomposition balancing and reachability on low treewidth graphs. IST Austria.https://doi.org/10.15479/AT:IST-2014-314-v1-1 

Anonymous, 1, Anonymous, 2, Anonymous, 3, &; Anonymous, 4. (2014). Optimal cost almost-sure reachability in POMDPs. IST Austria.

Chatterjee, K., Henzinger, T. A., &; Otop, J. (2014). Nested weighted automata. IST Austria.https://doi.org/10.15479/AT:IST-2014-170-v1-1 

Chatterjee, K., Ibsen-Jensen, R., &; Nowak, M. (2014). The complexity of evolution on graphs. IST Austria.https://doi.org/10.15479/AT:IST-2014-190-v2-2 

Huszár, K., &; Rolinek, M. (n.d.). Playful Math - An introduction to mathematical games. IST Austria.

Lagator, M., Morgan, A., Neve, P., &; Colegrave, N. (2014). Role of sex and migration in adaptation to sink environments. Evolution. Wiley.https://doi.org/10.1111/evo.12440 

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Chatterjee, K., Pavlogiannis, A., Adlam, B., &; Nowak, M. (2014). The time scale of evolutionary innovation. PLoS Computational Biology. Public Library of Science.https://doi.org/10.1371/journal.pcbi.1003818 

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Lagator, M., Colegrave, N., &; Neve, P. (2014). Data from: Selection history and epistatic interactions impact dynamics of adaptation to novel environmental stresses. Dryad.https://doi.org/10.5061/dryad.85dn7 

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Tragust, S., Ugelvig, L. V., Chapuisat, M., Heinze, J., &; Cremer, S. (2014). Data from: Pupal cocoons affect sanitary brood care and limit fungal infections in ant colonies. Dryad.https://doi.org/10.5061/dryad.nc0gc 

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Dhar, R., Bergmiller, T., &; Wagner, A. (2014). Data from: Increased gene dosage plays a predominant role in the initial stages of evolution of duplicate TEM-1 beta lactamase genes. Dryad.https://doi.org/10.5061/dryad.jc402 

Chatterjee, K., Henzinger, M. H., Krinninger, S., &; Nanongkai, D. (2014). Polynomial-time algorithms for energy games with special weight structures. Algorithmica. Springer.https://doi.org/10.1007/s00453-013-9843-7 

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Kolmogorov, V. (2013). Reweighted message passing revisited. IST Austria.

Gridchyn, I., &; Kolmogorov, V. (2013). Potts model, parametric maxflow and k-submodular functions (pp. 2320–2327). Presented at the ICCV: International Conference on Computer Vision, Sydney, Australia: IEEE.https://doi.org/10.1109/ICCV.2013.288 

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Campinho, P., Behrndt, M., Ranft, J., Risler, T., Minc, N., &; Heisenberg, C.-P. J. (2013). Tension-oriented cell divisions limit anisotropic tissue tension in epithelial spreading during zebrafish epiboly. Nature Cell Biology. Nature Publishing Group.https://doi.org/10.1038/ncb2869 

Campinho, P., &; Heisenberg, C.-P. J. (2013). The force and effect of cell proliferation. EMBO Journal. Wiley-Blackwell.https://doi.org/10.1038/emboj.2013.225 

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Chatterjee, K., &; aCki, J. (2013). Faster algorithms for Markov decision processes with low treewidth. Presented at the CAV: Computer Aided Verification, St. Petersburg, Russia: Springer.https://doi.org/10.1007/978-3-642-39799-8_36 

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covanová, M., Sauer, M., Rychtá, J., Friml, J., Petrásek, J., &; Zaeímalová, E. (2013). Overexpression of the auxin binding PROTEIN1 modulates PIN-dependent auxin transport in tobacco cells. PLoS One. Public Library of Science.https://doi.org/10.1371/journal.pone.0070050 

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Bojsen-Hansen, M., &; Wojtan, C. (2013). Liquid surface tracking with error compensation. ACM Transactions on Graphics. ACM.https://doi.org/10.1145/2461912.2461991 

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Erdös, L., &; Farrell, B. (2013). Local eigenvalue density for general MANOVA matrices. Journal of Statistical Physics. Springer.https://doi.org/10.1007/s10955-013-0807-8 

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Chatterjee, K., &; Prabhu, V. (2013). Quantitative timed simulation functions and refinement metrics for real-time systems. In Proceedings of the 16th International Conference on Hybrid Systems: Computation and Control (Vol. 1, pp. 273–282). Philadelphia, PA USA: Springer.https://doi.org/10.1145/2461328.2461370 

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Tran Viet, K., Powell, C., Barathi, V., Klemm, T., Maurer Stroh, S., Limviphuvadh, V.,https://doi.org/10.1016/j.ajhg.2013.04.005__Young, T. (2013). Mutations in SCO2 are associated with autosomal-dominant high-grade myopia. American Journal of Human Genetics. Cell Press.https://doi.org/10.1016/j.ajhg.2013.04.005 

Topp, C., Iyer Pascuzzi, A., Anderson, J., Lee, C., Zurek, P., Symonova, O.,https://doi.org/10.1073/pnas.1304354110__Benfey, P. (2013). 3D phenotyping and quantitative trait locus mapping identify core regions of the rice genome controlling root architecture. PNAS. National Academy of Sciences.https://doi.org/10.1073/pnas.1304354110 

Remy, E., Cabrito, T., Baster, P., Batista, R., Teixeira, M., Friml, J.,https://doi.org/10.1105/tpc.113.110353__Duque, P. (2013). A major facilitator superfamily transporter plays a dual role in polar auxin transport and drought stress tolerance in Arabidopsis. Plant Cell. American Society of Plant Biologists.https://doi.org/10.1105/tpc.113.110353 

Du, Y., Tejos, R., Beck, M., Himschoot, E., Li, H., Robatzek, S.,https://doi.org/10.1073/pnas.1220205110__Friml, J. (2013). Salicylic acid interferes with clathrin-mediated endocytic protein trafficking. PNAS. National Academy of Sciences.https://doi.org/10.1073/pnas.1220205110 

Tanaka, H., Kitakura, S., Rakusová, H., Uemura, T., Feraru, M., De Rycke, R.,https://doi.org/10.1371/journal.pgen.1003540__Friml, J. (2013). Cell polarity and patterning by PIN trafficking through early endosomal compartments in arabidopsis thaliana. PLoS Genetics. Public Library of Science.https://doi.org/10.1371/journal.pgen.1003540 

Kolmogorov, V., &; divný, S. (2013). The complexity of conservative valued CSPs. Journal of the ACM. ACM.https://doi.org/10.1145/2450142.2450146 

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Avila, M., Mellibovsky, F., Roland, N., &; Hof, B. (2013). Streamwise-localized solutions at the onset of turbulence in pipe flow. Physical Review Letters. American Physical Society.https://doi.org/10.1103/PhysRevLett.110.224502 

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Weber, M., Hauschild, R., Schwarz, J., Moussion, C., de Vries, I., Legler, D.,https://doi.org/10.1126/science.1228456__Sixt, M. K. (2013). Interstitial dendritic cell guidance by haptotactic chemokine gradients. Science. American Association for the Advancement of Science.https://doi.org/10.1126/science.1228456 

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Yu, H., Karampelias, M., Robert, S., Peer, W., Swarup, R., Ye, S.,https://doi.org/10.1104/pp.113.217018__Estelle, M. (2013). Root ultraviolet b-sensitive1/weak auxin response3 is essential for polar auxin transport in arabidopsis. Plant Physiology. American Society of Plant Biologists.https://doi.org/10.1104/pp.113.217018 

Chatterjee, K., &; Raman, V. (2013). Assume-guarantee synthesis for digital contract signing. Formal Aspects of Computing. Springer.https://doi.org/10.1007/s00165-013-0283-6 

Chatterjee, K., De Alfaro, L., &; Henzinger, T. A. (2013). Strategy improvement for concurrent reachability and turn based stochastic safety games. Journal of Computer and System Sciences. Elsevier.https://doi.org/10.1016/j.jcss.2012.12.001 

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Dupret, D., O’Neill, J., &; Csicsvari, J. L. (2013). Dynamic reconfiguration of hippocampal interneuron circuits during spatial learning. Neuron. Elsevier.https://doi.org/10.1016/j.neuron.2013.01.033 

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Levitz, J., Pantoja, C., Gaub, B., Janovjak, H. L., Reiner, A., Hoagland, A.,https://doi.org/10.1038/nn.3346__Isacoff, E. (2013). Optical control of metabotropic glutamate receptors. Nature Neuroscience. Nature Publishing Group.https://doi.org/10.1038/nn.3346 

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Granot Atedgi, E., Tkadik, G., Segev, R., &; Schneidman, E. (2013). Stimulus-dependent maximum entropy models of neural population codes. PLoS Computational Biology. Public Library of Science.https://doi.org/10.1371/journal.pcbi.1002922 

Tay, H., Schulze, S., Compagnon, J., Foley, F., Heisenberg, C.-P. J., Yost, H. J.,https://doi.org/10.1242/dev.087130__Amack, J. (2013). Lethal giant larvae 2 regulates development of the ciliated organ Kupffer’s vesicle. Development. Company of Biologists.https://doi.org/10.1242/dev.087130 

Wang, B., Bailly, A., Zwiewk, M., Henrichs, S., Azzarello, E., Mancuso, S.,https://doi.org/10.1105/tpc.112.105999__Geisler, M. (2013). Arabidopsis TWISTED DWAR functionally interacts with auxin exporter ABC on the root plasma membrane. Plant Cell. American Society of Plant Biologists.https://doi.org/10.1105/tpc.112.105999 

Marhavý, P., Vanstraelen, M., De Rybel, B., Zhaojun, D., Bennett, M., Beeckman, T., &; Benková, E. (2013). Auxin reflux between the endodermis and pericycle promotes lateral root initiation. EMBO Journal. Wiley-Blackwell.https://doi.org/10.1038/emboj.2012.303 

Löfke, C., Zwiewka, M., Heilmann, I., Van Montagu, M., Teichmann, T., &; Friml, J. (2013). Asymmetric gibberellin signaling regulates vacuolar trafficking of PIN auxin transporters during root gravitropism. PNAS. National Academy of Sciences.https://doi.org/10.1073/pnas.1300107110 

Chmelik, M., &; ehák, V. (2013). Controllable-choice message sequence graphs. Presented at the MEMICS: Mathematical and Engineering Methods in Computer Science, Znojmo, Czech Republic: Springer.https://doi.org/10.1007/978-3-642-36046-6_12 

Fang, S., Clark, R., Zheng, Y., Iyer Pascuzzi, A., Weitz, J., Kochian, L.,https://doi.org/10.1073/pnas.1222821110__Benfey, P. (2013). Genotypic recognition and spatial responses by rice roots. PNAS. National Academy of Sciences.https://doi.org/10.1073/pnas.1222821110 

Chen, C., Kolmogorov, V., Yan, Z., Metaxas, D., &; Lampert, C. (2013). Computing the M most probable modes of a graphical model (Vol. 31, pp. 161–169). Presented at the  AISTATS: Conference on Uncertainty in Artificial Intelligence, Scottsdale, AZ, United States: JMLR.

Kerber, M., &; Edelsbrunner, H. (2013). 3D kinetic alpha complexes and their implementation. In 2013 Proceedings of the 15th Workshop on Algorithm Engineering and Experiments (pp. 70–77). New Orleans, LA, United States: Society of Industrial and Applied Mathematics.https://doi.org/10.1137/1.9781611972931.6 

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Barton, N. H., Etheridge, A., &; Véber, A. (2013). Modelling evolution in a spatial continuum. Journal of Statistical Mechanics Theory and Experiment. IOP Publishing Ltd.https://doi.org/10.1088/1742-5468/2013/01/P01002 

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Barton, N. H. (2013). Recombination and sex. In The Princeton Guide to Evolution (pp. 328–333). Princeton University Press.

Tkadik, G., Granot Atedgi, E., Segev, R., &; Schneidman, E. (2013). Retinal metric: a stimulus distance measure derived from population neural responses. Physical Review Letters. American Physical Society.https://doi.org/10.1103/PhysRevLett.110.058104 

Baster, P., Robert, S., Kleine Vehn, J., Vanneste, S., Kania, U., Grunewald, W.,https://doi.org/10.1038/emboj.2012.310__Friml, J. (2013). SCF^TI AFB-auxin signalling regulates PIN vacuolar trafficking and auxin fluxes during root gravitropism. EMBO Journal. Wiley-Blackwell.https://doi.org/10.1038/emboj.2012.310 

Compagnon, J., &; Heisenberg, C.-P. J. (2013). Neurulation coordinating cell polarisation and lumen formation. EMBO Journal. Wiley-Blackwell.https://doi.org/10.1038/emboj.2012.325 

Krenn, S., Pietrzak, K. Z., &; Wadia, A. (2013). A counterexample to the chain rule for conditional HILL entropy, and what deniable encryption has to do with it. In A. Sahai (Ed.) (Vol. 7785, pp. 23–39). Presented at the TCC: Theory of Cryptography Conference, Tokyo, Japan: Springer.https://doi.org/10.1007/978-3-642-36594-2_2 

Tommasi, T., Quadrianto, N., Caputo, B., &; Lampert, C. (2013). Beyond dataset bias: Multi-task unaligned shared knowledge transfer. Presented at the ACCV: Asian Conference on Computer Vision, Daejeon, Korea: Springer.https://doi.org/10.1007/978-3-642-37331-2_1 

Edelsbrunner, H., Fasy, B. T., &; Rote, G. (2013). Add isotropic Gaussian kernels at own risk: More and more resilient modes in higher dimensions. Discrete &; Computational Geometry. Springer.https://doi.org/10.1007/s00454-013-9517-x 

Dubuis, J., Tkadik, G., Wieschaus, E., Gregor, T., &; Bialek, W. (2013). Positional information, in bits. PNAS. National Academy of Sciences.https://doi.org/10.1073/pnas.1315642110 

Chatterjee, K., Henzinger, M. H., Joglekar, M., &; Shah, N. (2013). Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives. Formal Methods in System Design. Springer.https://doi.org/10.1007/s10703-012-0180-2 

Pickup, M., Field, D., Rowell, D., &; Young, A. (2013). Source population characteristics affect heterosis following genetic rescue of fragmented plant populations. Proceedings of the Royal Society of London Series B Biological Sciences. Royal Society, The.https://doi.org/10.1098/rspb.2012.2058 

Dickerson, D., &; Bilkey, D. (2013). Aberrant neural synchrony in the maternal immune activation model: Using translatable measures to explore targeted interventions. Frontiers in Behavioral Neuroscience. Frontiers Research Foundation.https://doi.org/10.3389/fnbeh.2013.00217 

Ward, M., Lycett, S., Avila, D., Bollback, J. P., &; Leigh Brown, A. (2013). Evolutionary interactions between haemagglutinin and neuraminidase in avian influenza. BMC Evolutionary Biology. BioMed Central.https://doi.org/10.1186/1471-2148-13-222 

Cozzuol, M., Clozato, C., Holanda, E., Rodrigues, F., Nienow, S., De Thoisy, B.,https://doi.org/10.1644/12-MAMM-A-169.1__Santos, F. (2013). A new species of tapir from the Amazon. Journal of Mammalogy. Oxford University Press.https://doi.org/10.1644/12-MAMM-A-169.1 

Tarazona Santos, E., Machado, M., Magalhães, W., Chen, R., Lyon, F., Burdett, L.,https://doi.org/10.1093/molbev/mst119__Chanock, S. (2013). Evolutionary dynamics of the human NADPH oxidase genes CYBB, CYBA, NC, and NC: Functional implications. Molecular Biology and Evolution. Oxford University Press.https://doi.org/10.1093/molbev/mst119 

Di Rubbo, S., Irani, N., Kim, S., Xu, Z., Gadeyne, A., Dejonghe, W.,https://doi.org/10.1105/tpc.113.114058__Russinova, E. (2013). The clathrin adaptor complex AP-2 mediates endocytosis of brassinosteroid INSENSITIV in arabidopsis. Plant Cell. American Society of Plant Biologists.https://doi.org/10.1105/tpc.113.114058 

Kim, S., Xu, Z., Song, K., Kim, D., Kang, H., Reichardt, I.,https://doi.org/10.1105/tpc.113.114264__Hwang, I. (2013). Adaptor protein complex 2-mediated endocytosis is crucial for male reproductive organ development in arabidopsis. Plant Cell. American Society of Plant Biologists.https://doi.org/10.1105/tpc.113.114264 

Pbndík, A., Simonovik, B., Petersson, S., Henyková, E., Simon, S., Greenham, K.,https://doi.org/10.1105/tpc.113.114421__Ljung, K. (2013). Regulation of auxin homeostasis and gradients in Arabidopsis roots through the formation of the indole-3-acetic acid catabolite 2-oxindole-3-acetic acid. Plant Cell. American Society of Plant Biologists.https://doi.org/10.1105/tpc.113.114421 

Bargmann, B., Vanneste, S., Krouk, G., Nawy, T., Efroni, I., Shani, E.,https://doi.org/10.1038/msb.2013.40__Birnbaum, K. (2013). A map of cell typespecific auxin responses. Molecular Systems Biology. Nature Publishing Group.https://doi.org/10.1038/msb.2013.40 

Chatterjee, K., Doyen, L., Randour, M., &; Raskin, J. (2013). Looking at mean-payoff and total-payoff through windows. Presented at the ATVA: Automated Technology for Verification and Analysis, Hanoi, Vietnam: Springer.https://doi.org/10.1007/978-3-319-02444-8_10 

Reiter, J., Bozic, I., Chatterjee, K., &; Nowak, M. (2013). TTP: Tool for Tumor Progression. IST Austria.https://doi.org/10.15479/AT:IST-2013-104-v1-1 

Chatterjee, K., Chmelik, M., &; Tracol, M. (2013). What is decidable about partially observable Markov decision processes with omega-regular objectives. Presented at the CSL: Computer Science Logic, Torino, Italy: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.https://doi.org/10.4230/LIPIcs.CSL.2013.165 

Chatterjee, K., &; Ibsen-Jensen, R. (2013). Qualitative analysis of concurrent mean-payoff games. IST Austria.https://doi.org/10.15479/AT:IST-2013-126-v1-1 

Henzinger, T. A., &; Sezgin, A. (2013). How free is your linearizable concurrent data structure? IST Austria.https://doi.org/10.15479/AT:IST-2013-123-v1-1 

Chatterjee, K., Chmelik, M., &; Tracol, M. (2013). What is decidable about partially observable Markov decision processes with <9-regular objectives. IST Austria.https://doi.org/10.15479/AT:IST-2013-109-v1-1 

Chatterjee, K., &; Ibsen-Jensen, R. (2013). The complexity of ergodic games. IST Austria.https://doi.org/10.15479/AT:IST-2013-127-v1-1 

Porsche, J. (2013). Initiatives and projects related to RD. IST Austria.

Chatterjee, K., Doyen, L., Gimbert, H., &; Oualhadj, Y. (2013). Perfect-information stochastic mean-payoff parity games. IST Austria.https://doi.org/10.15479/AT:IST-2013-128-v1-1 

Chatterjee, K., Ibsen-Jensen, R., &; Majumdar, R. (2013). Edit distance for timed automata. IST Austria.https://doi.org/10.15479/AT:IST-2013-144-v1-1 

Chatterjee, K., Henzinger, T. A., Otop, J., &; Pavlogiannis, A. (2013). Distributed synthesis for LTL Fragments. IST Austria.https://doi.org/10.15479/AT:IST-2013-130-v1-1 

Chatterjee, K., Doyen, L., Nain, S., &; Vardi, M. (2013). The complexity of partial-observation stochastic parity games with finite-memory strategies. IST Austria.https://doi.org/10.15479/AT:IST-2013-141-v1-1 

Porsche, J. (2013). Technical requirements and features. IST Austria.

Ahmed, U., Chatterjee, K., &; Gulwani, S. (2013). Automatic generation of alternative starting positions for traditional board games. IST Austria.https://doi.org/10.15479/AT:IST-2013-146-v1-1 

Henzinger, T. A., &; Otop, J. (2013). From model checking to model measuring. Presented at the CONCUR: Concurrency Theory, Buenos Aires, Argentina: Springer.https://doi.org/10.1007/978-3-642-40184-8_20 

Henzinger, T. A., Payer, H., &; Sezgin, A. (2013). Replacing competition with cooperation to achieve scalable lock-free FIFO queues . IST Austria.https://doi.org/10.15479/AT:IST-2013-124-v1-1 

Chatterjee, K., &; Velner, Y. (2013). Hyperplane separation technique for multidimensional mean-payoff games. Presented at the CONCUR: Concurrency Theory, Buenos Aires, Argentinia: Springer.https://doi.org/10.1007/978-3-642-40184-8_35 

O’Brien, J., &; Benková, E. (2013). Cytokinin cross talking during biotic and abiotic stress responses. Frontiers in Plant Science. Frontiers Research Foundation.https://doi.org/10.3389/fpls.2013.00451 

Cuesta, C., Wabnik, K. T., &; Benková, E. (2013). Systems approaches to study root architecture dynamics. Frontiers in Plant Science. Frontiers Research Foundation.https://doi.org/10.3389/fpls.2013.00537 

Tragust, S., Ugelvig, L. V., Chapuisat, M., Heinze, J., &; Cremer, S. (2013). Pupal cocoons affect sanitary brood care and limit fungal infections in ant colonies. BMC Evolutionary Biology. BioMed Central.https://doi.org/10.1186/1471-2148-13-225 

Simmons, K., Prentice, J., Tkadik, G., Homann, J., Yee, H., Palmer, S.,https://doi.org/10.1371/journal.pcbi.1003344__Balasubramanian, V. (2013). Transformation of stimulus correlations by the retina. PLoS Computational Biology. Public Library of Science.https://doi.org/10.1371/journal.pcbi.1003344 

Hearn, J., Stone, G., Barton, N. H., Lohse, K., &; Bunnefeld, L. (2013). Data from: Likelihood-based inference of population history from low coverage de novo genome assemblies. Dryad.https://doi.org/10.5061/dryad.r3r60 

Stephens, G., Mora, T., Tkadik, G., &; Bialek, W. (2013). Statistical thermodynamics of natural images. Physical Review Letters. American Physical Society.https://doi.org/10.1103/PhysRevLett.110.018701 

Dragoi, C., Gupta, A., &; Henzinger, T. A. (2013). Automatic Linearizability Proofs of Concurrent Objects with Cooperating Updates. In Computer Aided Verification (Vol. 8044, pp. 174–190). Berlin, Heidelberg: Springer Berlin Heidelberg.https://doi.org/10.1007/978-3-642-39799-8_11 

Zufferey, D. (2013). Analysis of dynamic message passing programs. Institute of Science and Technology Austria.https://doi.org/10.15479/at:ista:1405 

Bansal, K., Koskinen, E., Wies, T., &; Zufferey, D. (2013). Structural Counter Abstraction. (N. Piterman &; S. Smolka, Eds.). Presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, Rome, Italy: Springer.https://doi.org/10.1007/978-3-642-36742-7_5 

Zagorsky, B., Reiter, J., Chatterjee, K., &; Nowak, M. (2013). Forgiver triumphs in alternating prisoner’s dilemma . PLoS One. Public Library of Science.https://doi.org/10.1371/journal.pone.0080814 

Reiter, J., Boei, I., Allen, B., Chatterjee, K., &; Nowak, M. (2013). The effect of one additional driver mutation on tumor progression. Evolutionary Applications. Wiley-Blackwell.https://doi.org/10.1111/eva.12020 

Boei, I., Reiter, J., Allen, B., Antal, T., Chatterjee, K., Shah, P.,https://doi.org/10.7554/eLife.00747__Nowak, M. (2013). Evolutionary dynamics of cancer in response to targeted combination therapy. ELife. eLife Sciences Publications.https://doi.org/10.7554/eLife.00747 

Reiter, J., Boei, I., Chatterjee, K., &; Nowak, M. (2013). TTP: Tool for tumor progression. In Proceedings of 25th Int. Conf. on Computer Aided Verification (Vol. 8044, pp. 101–106). St. Petersburg, Russia: Springer.https://doi.org/10.1007/978-3-642-39799-8_6 

Cerny, P., Henzinger, T. A., Radhakrishna, A., Ryzhyk, L., &; Tarrach, T. (2013). Efficient synthesis for concurrency by semantics-preserving transformations (Vol. 8044, pp. 951–967). Presented at the CAV: Computer Aided Verification, St. Petersburg, Russia: Springer.https://doi.org/10.1007/978-3-642-39799-8_68 

Brázdil, T., Chatterjee, K., Forejt, V., &; Kudera, A. (2013). Trading performance for stability in Markov decision processes. In 28th Annual ACM/IEEE Symposium (pp. 331–340). New Orleans, LA, United States: IEEE.https://doi.org/10.1109/LICS.2013.39 

Takhanov, R., &; Kolmogorov, V. (2013). Inference algorithms for pattern-based CRFs on sequence data. In ICML’13 Proceedings of the 30th International Conference on International (Vol. 28, pp. 145–153). Atlanta, GA, USA: ML Research Press.

Remy, E., Baster, P., Friml, J., &; Duque, P. (2013). ZIFL1.1 transporter modulates polar auxin transport by stabilizing membrane abundance of multiple PINs in Arabidopsis root tip. Plant Signaling &; Behavior. Taylor &; Francis.https://doi.org/10.4161/psb.25688 

Refardt, D., Bergmiller, T., &; Kümmerli, R. (2013). Altruism can evolve when relatedness is low: Evidence from bacteria committing suicide upon phage infection. Proceedings of the Royal Society of London Series B Biological Sciences. The Royal Society.https://doi.org/10.1098/rspb.2012.3035 

Refardt, D., Bergmiller, T., &; Kümmerli, R. (2013). Data from: Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection. Dryad.https://doi.org/10.5061/dryad.b1q2n 

Dziembowski, S., Faust, S., Kolmogorov, V., &; Pietrzak, K. Z. (2013). Proofs of Space. IST Austria.

Beyer, D., Henzinger, T. A., Keremoglu, M., &; Wendler, P. (2012). Conditional model checking: A technique to pass information between verifiers. In Proceedings of the ACM SIGSOFT 20th International Symposium on the Foundations of Software Engineering. Cary, NC, USA: ACM.https://doi.org/10.1145/2393596.2393664 

Faust, S., Pietrzak, K. Z., &; Schipper, J. (2012). Practical leakage-resilient symmetric cryptography. In https://doi.org/10.1007/978-3-642-33027-8_13__Conference proceedings CHES 2012 (Vol. 7428, pp. 213–232). Leuven, Belgium: Springer.https://doi.org/10.1007/978-3-642-33027-8_13 

Heyse, S., Kiltz, E., Lyubashevsky, V., Paar, C., &; Pietrzak, K. Z. (2012). Lapin: An efficient authentication protocol based on ring-LPN. In https://doi.org/10.1007/978-3-642-34047-5_20__Conference proceedings FSE 2012 (Vol. 7549, pp. 346–365). Washington, DC, USA: Springer.https://doi.org/10.1007/978-3-642-34047-5_20 

Liang, H., Hippenmeyer, S., &; Ghashghaei, H. (2012). A Nestin-cre transgenic mouse is insufficient for recombination in early embryonic neural progenitors. Biology Open. The Company of Biologists.https://doi.org/10.1242/bio.20122287 

Seiringer, R. (2012). Absence of bound states implies non-negativity of the scattering length. Journal of Spectral Theory. European Mathematical Society.https://doi.org/10.4171/JST/31 

Ebersberger, I., De Matos Simoes, R., Kupczok, A., Gube, M., Kothe, E., Voigt, K., &; Von Haeseler, A. (2012). A consistent phylogenetic backbone for the fungi. Molecular Biology and Evolution. Oxford University Press.https://doi.org/10.1093/molbev/msr285 

Chatterjee, K., Joglekar, M., &; Shah, N. (2012). Average case analysis of the classical algorithm for Markov decision processes with Büchi objectives (Vol. 18, pp. 461–473). Presented at the FSTTCS: Foundations of Software Technology and Theoretical Computer Science, Hyderabad, India: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.https://doi.org/10.4230/LIPIcs.FSTTCS.2012.461 

Chatterjee, K., Zufferey, D., &; Nowak, M. (2012). Evolutionary game dynamics in populations with different learners. Journal of Theoretical Biology. Elsevier.https://doi.org/10.1016/j.jtbi.2012.02.021 

Edelsbrunner, H., &; Strelkova, N. (2012). On the configuration space of Steiner minimal trees. Russian Mathematical Surveys. IOP Publishing Ltd.https://doi.org/10.1070/RM2012v067n06ABEH004820 

Boker, U., &; Henzinger, T. A. (2012). Approximate determinization of quantitative automata. In Leibniz International Proceedings in Informatics (Vol. 18, pp. 362–373). Hyderabad, India: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.https://doi.org/10.4230/LIPIcs.FSTTCS.2012.362 

Edelsbrunner, H., &; Symonova, O. (2012). The adaptive topology of a digital image (pp. 41–48). Presented at the ISVD: International Symposium on Voronoi Diagrams in Science and Engineering, New Brunswick, NJ, USA : IEEE.https://doi.org/10.1109/ISVD.2012.11 

Cerny, P., Chmelik, M., Henzinger, T. A., &; Radhakrishna, A. (2012). Interface Simulation Distances. In Electronic Proceedings in Theoretical Computer Science (Vol. 96, pp. 29–42). Napoli, Italy: EPTCS.https://doi.org/10.4204/EPTCS.96.3 

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Chatterjee, K., Henzinger, T. A., &; Prabhu, V. (2012). Finite automata with time delay blocks. In roceedings of the tenth ACM international conference on Embedded software (pp. 43–52). Tampere, Finland: ACM.https://doi.org/10.1145/2380356.2380370 

Hadizadeh Yazdi, N., Guet, C. C., Johnson, R., &; Marko, J. (2012). Variation of the folding and dynamics of the Escherichia coli chromosome with growth conditions. Molecular Microbiology. Wiley-Blackwell.https://doi.org/10.1111/mmi.12071 

Dolbilin, N., Edelsbrunner, H., &; Musin, O. (2012). On the optimality of functionals over triangulations of Delaunay sets. Russian Mathematical Surveys. IOP Publishing.https://doi.org/10.1070/RM2012v067n04ABEH004807 

Dueck, A., Ziegler, C., Eichner, A., Berezikov, E., &; Meister, G. (2012). MicroRNAs associated with the different human Argonaute proteins. Nucleic Acids Research. Oxford University Press.https://doi.org/10.1093/nar/gks705 

Chatterjee, K., Chmelik, M., &; Majumdar, R. (2012). Equivalence of games with probabilistic uncertainty and partial observation games (Vol. 7561, pp. 385–399). Presented at thehttps://doi.org/10.1007/978-3-642-33386-6_30__ATVA: Automated Technology for Verification and Analysis, Thiruvananthapuram, India: Springer.https://doi.org/10.1007/978-3-642-33386-6_30 

Pernia-Andrade, A., Goswami, S., Stickler, Y., Fröbe, U., Schlögl, A., &; Jonas, P. M. (2012). A deconvolution based method with high sensitivity and temporal resolution for detection of spontaneous synaptic currents in vitro and in vivo. Biophysical Journal. Biophysical.https://doi.org/10.1016/j.bpj.2012.08.039 

Allen, K., Rawlins, J. N., Bannerman, D., &; Csicsvari, J. L. (2012). Hippocampal place cells can encode multiple trial-dependent features through rate remapping. Journal of Neuroscience. Society for Neuroscience.https://doi.org/10.1523/JNEUROSCI.6175-11.2012 

Uhler, C. (2012). Geometry of maximum likelihood estimation in Gaussian graphical models. Annals of Statistics. Institute of Mathematical Statistics.https://doi.org/10.1214/11-AOS957 

Cremer, S., Suefuji, M., Schrempf, A., &; Heinze, J. (2012). The dynamics of male-male competition in Cardiocondyla obscurior ants. BMC Ecology. BioMed Central.https://doi.org/10.1186/1472-6785-12-7 

Aeschbacher, S., Beaumont, M., &; Futschik, A. (2012). A novel approach for choosing summary statistics in approximate Bayesian computation. Genetics. Genetics Society of America.https://doi.org/10.1534/genetics.112.143164 

Danowski, P. (2012). Kontext Open Access: Creative Commons. Mitteilungen der Vereinigung Österreichischer Bibliothekarinnen &; Bibliothekare. VÖB.

Jain, A., Krenn, S., Pietrzak, K. Z., &; Tentes, A. (2012). Commitments and efficient zero knowledge proofs from learning parity with noise. In X. Wang &; K. Sako (Eds.) (Vol. 7658, pp. 663–680). Presented at the ASIACRYPT: Theory and Application of Cryptology and Information Security, Beijing, China: Springer.https://doi.org/10.1007/978-3-642-34961-4_40 

Goswami, S., Bucurenciu, I., &; Jonas, P. M. (2012). Miniature IPSCs in hippocampal granule cells are triggered by voltage-gated Ca^(2+) channels via microdomain coupling. Journal of Neuroscience. Society for Neuroscience.https://doi.org/10.1523/JNEUROSCI.6104-11.2012 

Raveendran, K., Thuerey, N., Wojtan, C., &; Turk, G. (2012). Controlling liquids using meshes. In Proceedings of the ACM SIGGRAPH/Eurographics Symposium on Computer Animation (pp. 255–264). Aire-la-Ville, Switzerland: ACM.

Bojsen-Hansen, M., Li, H., &; Wojtan, C. (2012). Tracking surfaces with evolving topology. ACM Transactions on Graphics. ACM.https://doi.org/10.1145/2185520.2185549 

Williams, C., Chen, W., Lee, C., Yaeger, D., Vyleta, N., &; Smith, S. (2012). Coactivation of multiple tightly coupled calcium channels triggers spontaneous release of GABA. Nature Neuroscience. Nature Publishing Group.https://doi.org/10.1038/nn.3162 

Brown, G., Kerber, M., &; Reid, M. (2012). Fano 3 folds in codimension 4 Tom and Jerry Part I. Compositio Mathematica. Cambridge University Press.https://doi.org/10.1112/S0010437X11007226 

Kolmogorov, V. (2012). Minimizing a sum of submodular functions. Discrete Applied Mathematics. Elsevier.https://doi.org/10.1016/j.dam.2012.05.025 

Weissman, D., &; Barton, N. H. (2012). Limits to the rate of adaptive substitution in sexual populations. PLoS Genetics. Public Library of Science.https://doi.org/10.1371/journal.pgen.1002740 

Bergmiller, T., Ackermann, M., &; Silander, O. (2012). Patterns of evolutionary conservation of essential genes correlate with their compensability. PLoS Genetics. Public Library of Science.https://doi.org/10.1371/journal.pgen.1002803 

Brázdil, B., Chatterjee, K., Kudera, A., &; Novotný, P. (2012). Efficient controller synthesis for consumption games with multiple resource types (Vol. 7358, pp. 23–38). Presented at the CAV: Computer Aided Verification, Berkeley, CA, USA: Springer.https://doi.org/10.1007/978-3-642-31424-7_8 

Edelsbrunner, H., &; Kerber, M. (2012). Alexander duality for functions: The persistent behavior of land and water and shore. In Proceedings of the twenty-eighth annual symposium on Computational geometry  (pp. 249–258). Chapel Hill, NC, USA: ACM.https://doi.org/10.1145/2261250.2261287 

Vyleta, M., Wong, J., &; Magun, B. (2012). Suppression of ribosomal function triggers innate immune signaling through activation of the NLR inflammasome. PLoS One. Public Library of Science.https://doi.org/10.1371/journal.pone.0036044 

Asarin, E., Donzé, A., Maler, O., &; Nickovic, D. (2012). Parametric identification of temporal properties (Vol. 7186, pp. 147–160). Presented at the RV: Runtime Verification, San Francisco, CA, United States: Springer.https://doi.org/10.1007/978-3-642-29860-8_12 

de Vladar, H. (2012). Amino acid fermentation at the origin of the genetic code. Biology Direct. BioMed Central.https://doi.org/10.1186/1745-6150-7-6 

Chatterjee, K., &; Raman, V. (2012). Synthesizing protocols for digital contract signing (Vol. 7148, pp. 152–168). Presented at the VMCAI: Verification, Model Checking and Abstract Interpretation, Philadelphia, PA, USA: Springer.https://doi.org/10.1007/978-3-642-27940-9_11 

Chatterjee, K., &; Doyen, L. (2012). Games and Markov decision processes with mean payoff parity and energy parity objectives (Vol. 7119, pp. 37–46). Presented at the MEMICS: Mathematical and Engineering Methods in Computer Science, Lednice, Czech Republic: Springer.https://doi.org/10.1007/978-3-642-25929-6_3 

Edelsbrunner, H., &; Kerber, M. (2012). Dual complexes of cubical subdivisions of dn. Discrete &; Computational Geometry. Springer.https://doi.org/10.1007/s00454-011-9382-4 

Dodis, Y., Pietrzak, K. Z., Kiltz, E., &; Wichs, D. (2012). Message authentication, revisited (Vol. 7237, pp. 355–374). Presented at the EUROCRYPT: Theory and Applications of Cryptographic Techniques, Cambridge, UK: Springer.https://doi.org/10.1007/978-3-642-29011-4_22 

Pietrzak, K. Z. (2012). Subspace LWE (Vol. 7194, pp. 548–563). Presented at the TCC: Theory of Cryptography Conference, Taormina, Sicily, Italy: Springer.https://doi.org/10.1007/978-3-642-28914-9_31 

Eggermann, E., Bucurenciu, I., Goswami, S., &; Jonas, P. M. (2012). Nanodomain coupling between Ca(2+) channels and sensors of exocytosis at fast mammalian synapses. Nature Reviews Neuroscience. Nature Publishing Group.https://doi.org/10.1038/nrn3125 

Berberich, E., Halperin, D., Kerber, M., &; Pogalnikova, R. (2012). Deconstructing approximate offsets. Discrete &; Computational Geometry. Springer.https://doi.org/10.1007/s00454-012-9441-5 

Kerber, M., &; Sagraloff, M. (2012). A worst case bound for topology computation of algebraic curves. https://doi.org/10.1016/j.jsc.2011.11.001__Journal of Symbolic Computation. Elsevier.https://doi.org/10.1016/j.jsc.2011.11.001 

Chatterjee, K., &; Henzinger, T. A. (2012). A survey of stochastic <9 regular games. Journal of Computer and System Sciences. Elsevier.https://doi.org/10.1016/j.jcss.2011.05.002 

Chatterjee, K., Doyen, L., &; Henzinger, T. A. (2012). A survey of partial-observation stochastic parity games. Formal Methods in System Design. Springer.https://doi.org/10.1007/s10703-012-0164-2 

Sharmanska, V., Quadrianto, N., &; Lampert, C. (2012). Augmented attribute representations (Vol. 7576, pp. 242–255). Presented at the ECCV: European Conference on Computer Vision, Florence, Italy: Springer.https://doi.org/10.1007/978-3-642-33715-4_18 

Busaryev, O., Cabello, S., Chen, C., Dey, T., &; Wang, Y. (2012). Annotating simplices with a homology basis and its applications (Vol. 7357, pp. 189–200). Presented at the SWAT: Symposium and Workshops on Algorithm Theory, Helsinki, Finland: Springer.https://doi.org/10.1007/978-3-642-31155-0_17 

Delahaye, B., Fahrenberg, U., Henzinger, T. A., Legay, A., &; Nickovic, D. (2012). Synchronous interface theories and time triggered scheduling (Vol. 7273, pp. 203–218). Presented at the FORTE: Formal Techniques for Networked and Distributed Systems &; FMOODS: Formal Methods for Open Object-Based Distributed Systems , Stockholm, Sweden: Springer.https://doi.org/10.1007/978-3-642-30793-5_13 

Mileyko, Y., Edelsbrunner, H., Price, C., &; Weitz, J. (2012). Hierarchical ordering of reticular networks. PLoS One. Public Library of Science.https://doi.org/10.1371/journal.pone.0036715 

Schachtner, H., Li, A., Stevenson, D., Calaminus, S., Thomas, S., Watson, S.,https://doi.org/10.1016/j.ejcb.2012.04.002__Machesky, L. (2012). Tissue inducible Lifeact expression allows visualization of actin dynamics in vivo and ex vivo. European Journal of Cell Biology. Elsevier.https://doi.org/10.1016/j.ejcb.2012.04.002 

Lampert, C., &; Peters, J. (2012). Real-time detection of colored objects in multiple camera streams with off-the-shelf hardware components. Journal of Real-Time Image Processing. Springer.https://doi.org/10.1007/s11554-010-0168-3 

Tkadik, G., Walczak, A., &; Bialek, W. (2012). Optimizing information flow in small genetic networks. III. A self-interacting gene. https://doi.org/10.1103/PhysRevE.85.041903__Physical Review E Statistical Nonlinear and Soft Matter Physics . American Institute of Physics.https://doi.org/10.1103/PhysRevE.85.041903 

Kolmogorov, V. (2012). Generalized roof duality and bisubmodular functions. Discrete Applied Mathematics. Elsevier.https://doi.org/10.1016/j.dam.2011.10.026 

Pereira, A., Leite, F., Brasil, B., Soares Martins, J., Torres, A., Pimenta, P.,https://doi.org/10.1128/JVI.05638-11__Bonjardim, C. (2012). A vaccinia virus-driven interplay between the MKK4/7-JNK1/2 pathway and cytoskeleton reorganization. Journal of Virology. ASM.https://doi.org/10.1128/JVI.05638-11 

Bendich, P., Cabello, S., &; Edelsbrunner, H. (2012). A point calculus for interlevel set homology. Pattern Recognition Letters. Elsevier.https://doi.org/10.1016/j.patrec.2011.10.007 

Chatterjee, K., &; Doyen, L. (2012). Energy parity games. Theoretical Computer Science. Elsevier.https://doi.org/10.1016/j.tcs.2012.07.038 

Tangermann, M., Müller, K., Aertsen, A., Birbaumer, N., Braun, C., Brunner, C.,https://doi.org/10.3389/fnins.2012.00055__Blankertz, B. (2012). Review of the BCI competition IV. Frontiers in Neuroscience. Frontiers Research Foundation.https://doi.org/10.3389/fnins.2012.00055 

Kruckman, A., Rubin, S., Sheridan, J., &; Zax, B. (2012). A Myhill Nerode theorem for automata with advice. In Proceedings GandALF 2012 (Vol. 96, pp. 238–246). Napoli, Italy: Open Publishing Association.https://doi.org/10.4204/EPTCS.96.18 

Pickup, M., Field, D., Rowell, D., &; Young, A. (2012). Predicting local adaptation in fragmented plant populations: Implications for restoration genetics. Evolutionary Applications. Wiley-Blackwell.https://doi.org/10.1111/j.1752-4571.2012.00284.x 

Rabinovich, A., &; Rubin, S. (2012). Interpretations in trees with countably many branches. Presented at the LICS: Symposium on Logic in Computer Science, Dubrovnik, Croatia: IEEE.https://doi.org/10.1109/LICS.2012.65 

Sixt, M. K. (2012). Cell migration: Fibroblasts find a new way to get ahead. Journal of Cell Biology. Rockefeller University Press.https://doi.org/10.1083/jcb.201204039 

Chatterjee, K., Chaubal, S., &; Kamath, P. (2012). Faster algorithms for alternating refinement relations (Vol. 16, pp. 167–182). Presented at the EACSL: European Association for Computer Science Logic, Fontainebleau, France: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.https://doi.org/10.4230/LIPIcs.CSL.2012.167 

Chatterjee, K., &; Henzinger, M. H. (2012). An O(n2) time algorithm for alternating Büchi games. In Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms (pp. 1386–1399). Kyoto, Japan: SIAM.https://doi.org/10.1137/1.9781611973099.109 

Chatterjee, K., &; Velner, Y. (2012). Mean-payoff pushdown games. IST Austria.https://doi.org/10.15479/AT:IST-2012-0002 

Chatterjee, K., Chaubal, S., &; Kamath, P. (2012). Faster algorithms for alternating refinement relations. IST Austria.https://doi.org/10.15479/AT:IST-2012-0001 

Chatterjee, K., &; Doyen, L. (2012). Partial-observation stochastic games: How to win when belief fails. In Proceedings of the 2012 27th Annual ACM/IEEE Symposium on Logic in Computer Science. Dubrovnik, Croatia: IEEE.https://doi.org/10.1109/LICS.2012.28 

Chatterjee, K. (2012). Robustness of structurally equivalent concurrent parity games (Vol. 7213, pp. 270–285). Presented at the FoSSaCS: Foundations of Software Science and Computation Structures, Tallinn, Estonia: Springer.https://doi.org/10.1007/978-3-642-28729-9_18 

Chatterjee, K., &; Tracol, M. (2012). Decidable problems for probabilistic automata on infinite words. In Proceedings of the 2012 27th Annual ACM/IEEE Symposium on Logic in Computer Science. Dubrovnik, Croatia : IEEE.https://doi.org/10.1109/LICS.2012.29 

Korc, F., Kolmogorov, V., &; Lampert, C. (2012). Approximating marginals using discrete energy minimization. Presented at the ICML: International Conference on Machine Learning, Edinburgh, Scotland: ICML.

Korc, F., Kolmogorov, V., &; Lampert, C. (2012). Approximating marginals using discrete energy minimization. IST Austria.https://doi.org/10.15479/AT:IST-2012-0003 

Porsche, J. (2012). Actual state of research data @ ISTAustria. IST Austria.

Konrad, M., Vyleta, M., Theis, F., Stock, M., Tragust, S., Klatt, M.,https://doi.org/10.1371/journal.pbio.1001300__Cremer, S. (2012). Social transfer of pathogenic fungus promotes active immunisation in ant colonies. PLoS Biology. Public Library of Science.https://doi.org/10.1371/journal.pbio.1001300 

Konrad, M., Vyleta, M., Theis, F., Stock, M., Klatt, M., Drescher, V.,https://doi.org/10.5061/dryad.sv37s__Cremer, S. (2012). Data from: Social transfer of pathogenic fungus promotes active immunisation in ant colonies. Dryad.https://doi.org/10.5061/dryad.sv37s 

Aeschbacher, S., Futschik, A., &; Beaumont, M. (2012). Data from: Approximate Bayesian computation for modular inference problems with many parameters: the example of migration rates. Dryad.https://doi.org/10.5061/dryad.274b1 

Tragust, S., Mitteregger, B., Barone, V., Konrad, M., Ugelvig, L. V., &; Cremer, S. (2012). Data from: Ants disinfect fungus-exposed brood by oral uptake and spread of their poison. Dryad.https://doi.org/10.5061/dryad.61649 

Lohse, K., Barton, N. H., Melika, G., &; Stone, G. (2012). A likelihood based comparison of population histories in a parasitoid guild. Molecular Ecology. Wiley-Blackwell.https://doi.org/10.1111/j.1365-294X.2012.05700.x 

Lohse, K., Barton, N. H., Stone, G., &; Melika, G. (2012). Data from: A likelihood-based comparison of population histories in a parasitoid guild. Dryad.https://doi.org/10.5061/DRYAD.0G0FS 

Chatterjee, K., Henzinger, M. H., Krinninger, S., &; Nanongkai, D. (2012). Polynomial-time algorithms for energy games with special weight structures. In Algorithms – ESA 2012 (Vol. 7501, pp. 301–312). Ljubljana, Slovenia: Springer.https://doi.org/10.1007/978-3-642-33090-2_27 

Grebenshchikov, S., Gupta, A., Lopes, N. P., Popeea, C., &; Rybalchenko, A. (2012). HSF(C): A software verifier based on Horn clauses. In C. Flanagan &; B. König (Eds.), Tools and Algorithms for the Construction and Analysis of Systems (Vol. 7214, pp. 549–551). Berlin, Heidelberg: Springer.https://doi.org/10.1007/978-3-642-28756-5_46 

Gupta, A. (2012). Improved Single Pass Algorithms for Resolution Proof Reduction. In Automated Technology for Verification and Analysis (Vol. 7561, pp. 107–121). Berlin, Heidelberg: Springer Berlin Heidelberg.https://doi.org/10.1007/978-3-642-33386-6_10 

Zufferey, D., Wies, T., &; Henzinger, T. A. (2012). Ideal abstractions for well structured transition systems (Vol. 7148, pp. 445–460). Presented at the VMCAI: Verification, Model Checking and Abstract Interpretation, Philadelphia, PA, USA: Springer.https://doi.org/10.1007/978-3-642-27940-9_29 

Diaz Jr, L., Williams, R., Wu, J., Kinde, I., Hecht, J., Berlin, J.,https://doi.org/10.1038/nature11219__Vogelstein, B. (2012). The molecular evolution of acquired resistance to targeted EGFR blockade in colorectal cancers. Nature. Nature Publishing Group.https://doi.org/10.1038/nature11219 

Chatterjee, K., Reiter, J., &; Nowak, M. (2012). Evolutionary dynamics of biological auctions. Theoretical Population Biology. Academic Press.https://doi.org/10.1016/j.tpb.2011.11.003 

Kim, S., Guzmán, J., Hu, H., &; Jonas, P. M. (2012). Active dendrites support efficient initiation of dendritic spikes in hippocampal C pyramidal neurons. Nature Neuroscience. Nature Publishing Group.https://doi.org/10.1038/nn.3060 

Ibarra, C. A., Feng, X., Schoft, V. K., Hsieh, T.-F., Uzawa, R., Rodrigues, J. A.,https://doi.org/10.1126/science.1224839__Zilberman, D. (2012). Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science. American Association for the Advancement of Science.https://doi.org/10.1126/science.1224839 

Pausinger, F. (2012). Elementary solutions of the Bernstein problem on two intervals. Journal of Mathematical Physics, Analysis, Geometry. B. Verkin Institute for Low Temperature Physics and Engineering.

Yu, J., Wojtan, C., Turk, G., &; Yap, C. (2012). Explicit mesh surfaces for particle based fluids. In Computer Graphics Forum (Vol. 31, pp. 815–824). Cagliari, Sardinia, Italy: Wiley.https://doi.org/10.1111/j.1467-8659.2012.03062.x 

Danowski, P. (2012). Die Zeit des Abwartens ist vorbei! BuB - Forum Bibliothek und Information. Fachzeitschrift des BIB – Berufsverband Information Bibliothek.

Danowski, P. (2012). Zwischen Technologie und Information. Büchereiperspektiven. Büchereiverband Österreichs.

Quadrianto, N., Lampert, C., &; Chen, C. (2012). The most persistent soft-clique in a set of sampled graphs. In Proceedings of the 29th International Conference on Machine Learning (pp. 211–218). Edinburgh, United Kingdom: ML Research Press.

Pausinger, F. (2012). Weak multipliers for generalized van der Corput sequences. Journal de Theorie Des Nombres Des Bordeaux. Université de Bordeaux.https://doi.org/10.5802/jtnb.819 

Edelsbrunner, H., Musin, O., Ukhalov, A., Yakimova, O., Alexeev, V., Bogaevskaya, V.,  Preobrazhenskaya, M. (2012). Fractal and computational geometry for generalizing cartographic objects. Modeling and Analysis of Information Systems. Russian Academy of Sciences.

Sheng, Y., Cutler, B., Chen, C., &; Nasman, J. (2011). Perceptual global illumination cancellation in complex projection environments. Computer Graphics Forum. Wiley-Blackwell.https://doi.org/10.1111/j.1467-8659.2011.01985.x 

Smutny, M., Wu, S., Gomez, G., Mangold, S., Yap, A., &; Hamilton, N. (2011). Multicomponent analysis of junctional movements regulated by Myosin II isoforms at the epithelial zonula adherens. PLoS One. Public Library of Science.https://doi.org/10.1371/journal.pone.0022458 

Henzinger, T. A., Singh, A., Singh, V., Wies, T., &; Zufferey, D. (2011). Static scheduling in clouds (pp. 1–6). Presented at the HotCloud: Workshop on Hot Topics in Cloud Computing, USENIX.

Henzinger, T. A., &; Mateescu, M. (2011). Tail approximation for the chemical master equation. Presented at the WCSB: Workshop on Computational Systems Biology (TICSP), Tampere International Center for Signal Processing.

Henzinger, T. A., &; Mateescu, M. (2011). Propagation models for computing biochemical reaction networks (pp. 1–3). Presented at the CMSB: Computational Methods in Systems Biology, Paris, France: Springer.https://doi.org/10.1145/2037509.2037510 

Bloem, R., Chatterjee, K., Greimel, K., Henzinger, T. A., &; Jobstmann, B. (2011). Specification-centered robustness. In 6th IEEE International Symposium on Industrial and Embedded Systems (pp. 176–185). Vasteras, Sweden: IEEE.https://doi.org/10.1109/SIES.2011.5953660 

Eggermann, E., &; Jonas, P. M. (2011). How the “slow”https://doi.org/10.1038/nn.3002__Ca(2+) buffer parvalbumin affects transmitter release in nanodomain coupling regimes at GABAergic synapses. Nature Neuroscience. Nature Publishing Group.https://doi.org/10.1038/nn.3002 

Van De Weygaert, R., Vegter, G., Edelsbrunner, H., Jones, B., Pranav, P., Park, C.,https://doi.org/10.1007/978-3-642-25249-5_3__Teillaud, M. (2011). Alpha, Betti and the Megaparsec Universe: On the topology of the Cosmic Web. In M. Gavrilova, K. Tan, &; M. Mostafavi (Eds.), Transactions on Computational Science XIV (Vol. 6970, pp. 60–101). Springer.https://doi.org/10.1007/978-3-642-25249-5_3 

Berberich, E., Halperin, D., Kerber, M., &; Pogalnikova, R. (2011). Deconstructing approximate offsets. In Proceedings of the twenty-seventh annual symposium on Computational geometry (pp. 187–196). Paris, France: ACM.https://doi.org/10.1145/1998196.1998225 

Kerber, M., &; Sagraloff, M. (2011). A note on the complexity of real algebraic hypersurfaces. Graphs and Combinatorics. Springer.https://doi.org/10.1007/s00373-011-1020-7 

Kerber, M., &; Sagraloff, M. (2011). Root refinement for real polynomials (pp. 209–216). Presented at the ISSAC: International Symposium on Symbolic and Algebraic Computation, California, USA: Springer.https://doi.org/10.1145/1993886.1993920 

Berberich, E., Hemmer, M., &; Kerber, M. (2011). A generic algebraic kernel for non linear geometric applications (pp. 179–186). Presented at the SCG: Symposium on Computational Geometry, Paris, France: ACM.https://doi.org/10.1145/1998196.1998224 

Tripakis, S., Lickly, B., Henzinger, T. A., &; Lee, E. (2011). A theory of synchronous relational interfaces. ACM Transactions on Programming Languages and Systems (TOPLAS). ACM.https://doi.org/10.1145/1985342.1985345 

Halalai, R., Henzinger, T. A., &; Singh, V. (2011). Quantitative evaluation of BFT protocols (pp. 255–264). Presented at the QEST: Quantitative Evaluation of Systems, Aachen, Germany: IEEE.https://doi.org/10.1109/QEST.2011.40 

Chatterjee, K., Doyen, L., &; Singh, R. (2011). On memoryless quantitative objectives. In O. Owe, M. Steffen, &; J. A. Telle (Eds.) (Vol. 6914, pp. 148–159). Presented at the FCT: Fundamentals of Computation Theory, Oslo, Norway: Springer.https://doi.org/10.1007/978-3-642-22953-4_13 

Chatterjee, K., &; Fijalkow, N. (2011). A reduction from parity games to simple stochastic games (Vol. 54, pp. 74–86). Presented at the GandALF: Games, Automata, Logic, and Formal Verification, Minori, Italy: EPTCS.https://doi.org/10.4204/EPTCS.54.6 

Fisher, J., Henzinger, T. A., Nickovic, D., Piterman, N., Singh, A., &; Vardi, M. (2011). Dynamic reactive modules (Vol. 6901, pp. 404–418). Presented at the CONCUR: Concurrency Theory, Aachen, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.https://doi.org/10.1007/978-3-642-23217-6_27 

Chatterjee, K., Henzinger, T. A., Jobstmann, B., &; Singh, R. (2011). QUASY: quantitative synthesis tool (Vol. 6605, pp. 267–271). Presented at the TACAS: Tools and Algorithms for the Construction and Analysis of Systems, Saarbrucken, Germany: Springer.https://doi.org/10.1007/978-3-642-19835-9_24 

Chatterjee, K., Henzinger, T. A., &; Tracol, M. (n.d.). The decidability frontier for probabilistic automata on infinite words. ArXiv.

Abbot, P., Abe, J., Alcock, J., Alizon, S., Alpedrinha, J., Andersson, M.,https://doi.org/10.1038/nature09831__Zink, A. (2011). Inclusive fitness theory and eusociality. Nature. Nature Publishing Group.https://doi.org/10.1038/nature09831 

Sixt, M. K., &; Parent, C. (2011). Cells on the move in Philadelphia. Molecular Biology and Evolution. Oxford University Press.https://doi.org/10.1091/mbc.E10-12-0958 

Tkadik, G., &; Walczak, A. (2011). Information transmission in genetic regulatory networks a review. Journal of Physics: Condensed Matter. IOP Publishing Ltd.https://doi.org/10.1088/0953-8984/23/15/153102 

Krens, G., Möllmert, S., &; Heisenberg, C.-P. J. (2011). Enveloping cell layer differentiation at the surface of zebrafish germ layer tissue explants. PNAS. National Academy of Sciences.https://doi.org/10.1073/pnas.1010767108 

Kupczok, A. (2011). Consequences of different null models on the tree shape bias of supertree methods. Systematic Biology. Oxford University Press.https://doi.org/10.1093/sysbio/syq086 

Stockinger, P., Heisenberg, C.-P. J., &; Maître, J.-L. (2011). Defective neuroepithelial cell cohesion affects tangential branchiomotor neuron migration in the zebrafish neural tube. Development. Company of Biologists.https://doi.org/10.1242/dev.071233 

Polechova, J., &; Barton, N. H. (2011). Genetic drift widens the expected cline but narrows the expected cline width. Genetics. Genetics Society of America.https://doi.org/10.1534/genetics.111.129817 

Barton, N. H., &; Etheridge, A. (2011). The relation between reproductive value and genetic contribution. Genetics. Genetics Society of America.https://doi.org/10.1534/genetics.111.127555 

de Vladar, H., &; Barton, N. H. (2011). The contribution of statistical physics to evolutionary biology. Trends in Ecology and Evolution. Cell Press.https://doi.org/10.1016/j.tree.2011.04.002 

Maître, J.-L., &; Heisenberg, C.-P. J. (2011). The role of adhesion energy in controlling cell-cell contacts. Current Opinion in Cell Biology. Elsevier.https://doi.org/10.1016/j.ceb.2011.07.004 

Janovjak, H. L., Sandoz, G., &; Isacoff, E. (2011). Modern ionotropic glutamate receptor with a K+ selectivity signature sequence. Nature Communications. Nature Publishing Group.https://doi.org/10.1038/ncomms1231 

Sixt, M. K., &; Lämmermann, T. (2011). In vitro analysis of chemotactic leukocyte migration in 3D environments. Cell Migration. Springer.https://doi.org/10.1007/978-1-61779-207-6_11 

Palero, F., Guerao, G., Clark, P., &; Abello, P. (2011). Scyllarus arctus (Crustacea: Decapoda: Scyllaridae) final stage phyllosoma identified by DNA analysis, with morphological description. Journal of the Marine Biological Association of the United Kingdom. Cambridge University Press.https://doi.org/10.1017/S0025315410000287 

Edelsbrunner, H., &; Kerber, M. (2011). Covering and packing with spheres by diagonal distortion in R^n. In C. Calude, G. Rozenberg, &; A. Salomaa (Eds.), Rainbow of Computer Science (Vol. 6570, pp. 20–35). Springer.https://doi.org/10.1007/978-3-642-19391-0_2 

Henzinger, T. A., Jobstmann, B., &; Wolf, V. (2011). Formalisms for specifying Markovian population models. IJFCS: International Journal of Foundations of Computer Science. World Scientific Publishing.https://doi.org/10.1142/S0129054111008441 

Chatterjee, K., Henzinger, T. A., &; Prabhu, V. (2011). Timed parity games: Complexity and robustness. Logical Methods in Computer Science. International Federation of Computational Logic.https://doi.org/10.2168/LMCS-7(4:8)2011 

Raveendran, K., Wojtan, C., &; Turk, G. (2011). Hybrid smoothed particle hydrodynamics. In S. Spencer (Ed.) (pp. 33–42). Presented at the SCA: ACM SIGGRAPH/Eurographics Symposium on Computer animation, Vancouver, Canada: ACM.https://doi.org/10.1145/2019406.2019411 

Wojtan, C., Müller Fischer, M., &; Brochu, T. (2011). Liquid simulation with mesh-based surface tracking. Presented at the SIGGRAPH: Special Interest Group on Computer Graphics and Interactive Techniques, Vancouver, BC, Canada: ACM.https://doi.org/10.1145/2037636.2037644 

Lohse, K., Harrison, R., &; Barton, N. H. (2011). A general method for calculating likelihoods under the coalescent process. Genetics. Genetics Society of America.https://doi.org/10.1534/genetics.111.129569 

Zheng, Y., Gu, S., Edelsbrunner, H., Tomasi, C., &; Benfey, P. (2011). Detailed reconstruction of 3D plant root shape. Proceedings of the IEEE International Conference on Computer Vision. Barcelona, Spain: IEEE.https://doi.org/10.1109/ICCV.2011.6126475 

Chen, C., &; Edelsbrunner, H. (2011). Diffusion runs low on persistence fast. In Proceedings of the IEEE International Conference on Computer Vision. Barcelona, Spain: IEEE.https://doi.org/10.1109/ICCV.2011.6126271 

Edelsbrunner, H. (n.d.). Alpha shapes - a survey. In R. van de Weygaert, G. Vegter, J. Ritzerveld, &; V. Icke (Eds.), Tessellations in the Sciences: Virtues, Techniques and Applications of Geometric Tilings. Springer.

Almagor, S., Boker, U., &; Kupferman, O. (2011). What’s decidable about weighted automatahttps://doi.org/10.1007/978-3-642-24372-1_37__(Vol. 6996, pp. 482–491). Presented at the ATVA: Automated Technology for Verification and Analysis, Taipei, Taiwan: Springer.https://doi.org/10.1007/978-3-642-24372-1_37 

Piskac, R., &; Wies, T. (2011). Decision procedures for automating termination proofs. In R. Jhala &; D. Schmidt (Eds.) (Vol. 6538, pp. 371–386). Presented at the VMCAI: Verification Model Checking and Abstract Interpretation, Texas, USA: Springer.https://doi.org/10.1007/978-3-642-18275-4_26 

Chatterjee, K., De Alfaro, L., &; Pritam, R. (2011). Magnifying lens abstraction for stochastic games with discounted and long-run average objectives. arXiv. ArXiv.

Chatterjee, K., Henzinger, M. H., Joglekar, M., &; Nisarg, S. (2011). Symbolic algorithms for qualitative analysis of Markov decision processes with Büchi objectives. In G. Gopalakrishnan &; S. Qadeer (Eds.) (Vol. 6806, pp. 260–276). Presented at the CAV: Computer Aided Verification, Snowbird, USA: Springer.https://doi.org/10.1007/978-3-642-22110-1_21 

Chatterjee, K., &; Fijalkow, N. (2011). Finitary languages (Vol. 6638, pp. 216–226). Presented at the LATA: Language and Automata Theory and Applications, Tarragona, Spain: Springer.https://doi.org/10.1007/978-3-642-21254-3_16 

Brázdil, T., Broeek, V., Chatterjee, K., Forejt, V., &; Kudera, A. (2011). Two views on multiple mean payoff objectives in Markov Decision Processes. Presented at the LICS: Logic in Computer Science, Toronto, Canada: IEEE.https://doi.org/10.1109/LICS.2011.10 

Chatterjee, K., &; Prabhu, V. (2011). Synthesis of memory efficient real time controllers for safety objectives (pp. 221–230). Presented at the HSCC: Hybrid Systems - Computation and Control, Chicago, USA: Springer.https://doi.org/10.1145/1967701.1967734 

Chatterjee, K., &; Henzinger, M. H. (2011). Faster and dynamic algorithms for maximal end-component decomposition and related graph problems in probabilistic verification (pp. 1318–1336). Presented at the SODA: Symposium on Discrete Algorithms, San Francisco, SA, United States: SIAM.https://doi.org/10.1137/1.9781611973082.101 

Boker, U., &; Henzinger, T. A. (2011). Determinizing discounted-sum automata (Vol. 12, pp. 82–96). Presented at the CSL: Computer Science Logic, Bergen, Norway: Springer.https://doi.org/10.4230/LIPIcs.CSL.2011.82 

Cerny, P., Chatterjee, K., &; Henzinger, T. A. (2011). The complexity of quantitative information flow problems (pp. 205–217). Presented at the CSF: Computer Security Foundations, Cernay-la-Ville, France: IEEE.https://doi.org/10.1109/CSF.2011.21 

Henzinger, T. A., Singh, V., Wies, T., &; Zufferey, D. (2011). Scheduling large jobs by abstraction refinement (pp. 329–342). Presented at the EuroSys, Salzburg, Austria: ACM.https://doi.org/10.1145/1966445.1966476 

Row, R., Maître, J.-L., Martin, B., Stockinger, P., Heisenberg, C.-P. J., &; Kimelman, D. (2011). Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail. Developmental Biology. Elsevier.https://doi.org/10.1016/j.ydbio.2011.03.025 

Bollenbach, M. T., &; Kishony, R. (2011). Resolution of gene regulatory conflicts caused by combinations of antibiotics. Molecular Cell. Cell Press.https://doi.org/10.1016/j.molcel.2011.04.016 

Logeswaran, S., &; Barton, N. H. (2011). Mapping Mendelian traits in asexual progeny using changes in marker allele frequency. Genetical Research. Cambridge University Press.https://doi.org/10.1017/S0016672311000115 

Edelsbrunner, H., Morozov, D., &; Patel, A. (2011). Quantifying transversality by measuring the robustness of intersections. Foundations of Computational Mathematics. Springer.https://doi.org/10.1007/s10208-011-9090-8 

Ugelvig, L. V., Nielsen, P., Boomsma, J., &; Nash, D. (2011). Reconstructing eight decades of genetic variation in an isolated Danish population of the large blue butterfly Maculinea arion. BMC Evolutionary Biology. BioMed Central.https://doi.org/10.1186/1471-2148-11-201 

Tkadik, G., Garrigan, P., Ratliff, C., Milcinski, G., Klein, J., Seyfarth, L.,https://doi.org/10.1371/journal.pone.0020409__Balasubramanian, V. (2011). Natural images from the birthplace of the human eye. PLoS One. Public Library of Science.https://doi.org/10.1371/journal.pone.0020409 

Kupczok, A. (2011). Split based computation of majority rule supertrees. BMC Evolutionary Biology. BioMed Central.https://doi.org/10.1186/1471-2148-11-205 

Cremer, S., Schrempf, A., &; Heinze, J. (2011). Competition and opportunity shape the reproductive tactics of males in the ant Cardiocondyla obscurior. PLoS One. Public Library of Science.https://doi.org/10.1371/journal.pone.0017323 

Barton, N. H. (2011). Estimating linkage disequilibria. Heredity. Nature Publishing Group.https://doi.org/10.1038/hdy.2010.67 

Didier, F., Henzinger, T. A., Mateescu, M., &; Wolf, V. (2011). Approximation of event probabilities in noisy cellular processes. Theoretical Computer Science. Elsevier.https://doi.org/10.1016/j.tcs.2010.10.022 

Vyleta, N., &; Smith, S. (2011). Spontaneous glutamate release is independent of calcium influx and tonically activated by the calcium-sensing receptor. European Journal of Neuroscience. Wiley-Blackwell.https://doi.org/10.1523/JNEUROSCI.6398-10.2011 

Schlögl, A., Vidaurre, C., &; Sander, T. (2011). BioSig: The free and open source software library for biomedical signal processing. Computational Intelligence and Neuroscience. Hindawi Publishing Corporation.https://doi.org/10.1155/2011/935364 

Schraivogel, D., Weinmann, L., Beier, D., Tabatabai, G., Eichner, A., Zhu, J.,https://doi.org/10.1038/emboj.2011.301__Meister, G. (2011). CAMT is a novel tumour suppressor regulated by miR-9/9 * in glioblastoma stem cells. EMBO Journal. Wiley-Blackwell.https://doi.org/10.1038/emboj.2011.301 

Guerraoui, R., Henzinger, T. A., &; Singh, V. (2011). Verification of STM on relaxed memory models. Formal Methods in System Design. Springer.https://doi.org/10.1007/s10703-011-0131-3 

Chatterjee, K., &; Henzinger, M. H. (2011). An O(n2) time algorithm for alternating Büchi games. IST Austria.https://doi.org/10.15479/AT:IST-2011-0009 

Chatterjee, K., &; Doyen, L. (2011). Partial-observation stochastic games: How to win when belief fails. IST Austria.https://doi.org/10.15479/AT:IST-2011-0007 

Chatterjee, K. (2011). Bounded rationality in concurrent parity games. IST Austria.https://doi.org/10.15479/AT:IST-2011-0008 

Chatterjee, K. (2011). Robustness of structurally equivalent concurrent parity games. IST Austria.https://doi.org/10.15479/AT:IST-2011-0006 

Chatterjee, K. (2011). Bounded rationality in concurrent parity games. arXiv. ArXiv.

Boker, U., Chatterjee, K., Henzinger, T. A., &; Kupferman, O. (2011). Temporal specifications with accumulative values. Presented at the LICS: Logic in Computer Science, Toronto, Canada: IEEE.https://doi.org/10.1109/LICS.2011.33 

Boker, U., Chatterjee, K., Henzinger, T. A., &; Kupferman, O. (2011). Temporal specifications with accumulative values. IST Austria.https://doi.org/10.15479/AT:IST-2011-0003 

Chen, C., Freedman, D., &; Lampert, C. (2011). Enforcing topological constraints in random field image segmentation. IST Austria.https://doi.org/10.15479/AT:IST-2011-0002 

Wies, T., Muñiz, M., &; Kuncak, V. (2011). On an efficient decision procedure for imperative tree data structures. IST Austria.https://doi.org/10.15479/AT:IST-2011-0005 

Chatterjee, K., &; Tracol, M. (2011). Decidable problems for probabilistic automata on infinite words. IST Austria.https://doi.org/10.15479/AT:IST-2011-0004 

Cerny, P., Chatterjee, K., Henzinger, T. A., Radhakrishna, A., &; Singh, R. (2011). Quantitative synthesis for concurrent programs. In G. Gopalakrishnan &; S. Qadeer (Eds.) (Vol. 6806, pp. 243–259). Presented at the CAV: Computer Aided Verification, Snowbird, USA: Springer.https://doi.org/10.1007/978-3-642-22110-1_20 

Chatterjee, K., &; Doyen, L. (2011). Energy and mean-payoff parity Markov Decision Processes (Vol. 6907, pp. 206–218). Presented at the MFCS: Mathematical Foundations of Computer Science, Warsaw, Poland: Springer.https://doi.org/10.1007/978-3-642-22993-0_21 

Chatterjee, K., &; Doyen, L. (2011). Energy and mean-payoff parity Markov decision processes. IST Austria.https://doi.org/10.15479/AT:IST-2011-0001 

Park, H., Oikonomou, P., Guet, C. C., &; Cluzel, P. (2011). Noise underlies switching behavior of the bacterial flagellum. Biophysical Journal. Elsevier.https://doi.org/10.1016/j.bpj.2011.09.040 

Gonzalez-Diaz, R., Ion, A., Jimenez, M. J., &; Poyatos, R. (2011). Incremental-decremental algorithm for computing AT-models and persistent homology. In Computer Analysis of Images and Patterns (Vol. 6854, pp. 286–293). Seville, Spain: Springer Nature.https://doi.org/10.1007/978-3-642-23672-3_35 

Palero, F., Abello, P., Macpherson, E., Beaumont, M., &; Pascual, M. (2011). Data from: Effect of oceanographic barriers and overfishing on the population genetic structure of the European spiny lobster (Palinurus elephas). IST Austria.https://doi.org/10.5061/dryad.299h8 

Schumann, K. (2011). The role of chemotactic gradients in dendritic cell migration. Institute of Science and Technology Austria.

Nowozin, S., &; Lampert, C. (2011). Structured learning and prediction in computer vision. Foundations and Trends in Computer Graphics and Vision. Now Publishers.https://doi.org/10.1561/0600000033 

Jahnel, M., Behrndt, M., Jannasch, A., Schaeffer, E., &; Grill, S. (2011). Measuring the complete force field of an optical trap. Optics Letters. Optica Publishing Group.https://doi.org/10.1364/OL.36.001260 

de Vladar, H., &; Barton, N. H. (2011). The statistical mechanics of a polygenic character under stabilizing selection mutation and drift. Journal of the Royal Society Interface. The Royal Society.https://doi.org/10.1098/rsif.2010.0438 

Barton, N. H., &; Turelli, M. (2011). Spatial waves of advance with bistable dynamics: Cytoplasmic and genetic analogues of Allee effects. American Naturalist. The University of Chicago Press.https://doi.org/10.1086/661246 

Blanc, R., Henzinger, T. A., Hottelier, T., &; Kovács, L. (2010). ABC: Algebraic Bound Computation for loops. In E. M. Clarke &; A. Voronkov (Eds.), Logic for Programming, Artificial Intelligence, and Reasoning (Vol. 6355, pp. 103–118). Berlin, Heidelberg: Springer Nature.https://doi.org/10.1007/978-3-642-17511-4_7 

Kupczok, A., Schmidt, H., &; Von Haeseler, A. (2010). Accuracy of phylogeny reconstruction methods combining overlapping gene data sets . Algorithms for Molecular Biology. BioMed Central.https://doi.org/10.1186/1748-7188-5-37 

Weissman, D., Feldman, M., &; Fisher, D. (2010). The rate of fitness-valley crossing in sexual populations. Genetics. Genetics Society of America.https://doi.org/10.1534/genetics.110.123240 

Feret, J., Henzinger, T. A., Koeppl, H., &; Petrov, T. (2010). Lumpability abstractions of rule-based systems (Vol. 40, pp. 142–161). Presented at the MECBIC: Membrane Computing and Biologically Inspired Process Calculi, Jena, Germany: Open Publishing Association.

Edelsbrunner, H., Morozov, D., &; Patel, A. (2010). The stability of the apparent contour of an orientable 2-manifold. In Topological Data Analysis and Visualization: Theory, Algorithms and Applications (pp. 27–42). Springer.https://doi.org/10.1007/978-3-642-15014-2_3 

Guzmán, J., &; Jonas, P. M. (2010). Beyond TARPs: The growing list of auxiliary AMPAR subunits. Neuron. Elsevier.https://doi.org/10.1016/j.neuron.2010.04.003 

Didier, F., Henzinger, T. A., Mateescu, M., &; Wolf, V. (2010). SABRE: A tool for the stochastic analysis of biochemical reaction networks (pp. 193–194). Presented at the QEST: Quantitative Evaluation of Systems, Williamsburg, USA: IEEE.https://doi.org/10.1109/QEST.2010.33 

Henzinger, T. A., Hottelier, T., Kovács, L., &; Rybalchenko, A. (2010). Aligators for arrays (Vol. 6397, pp. 348–356). Presented at the LPAR: Logic for Programming, Artificial Intelligence, and Reasoning, Yogyakarta, Indonesia: Springer.https://doi.org/10.1007/978-3-642-16242-8_25 

Didier, F., Henzinger, T. A., Mateescu, M., &; Wolf, V. (2010). Fast adaptive uniformization of the chemical master equation. IET Systems Biology. Institution of Engineering and Technology.https://doi.org/10.1049/iet-syb.2010.0005 

Chatterjee, K., &; Doyen, L. (2010). The complexity of partial-observation parity games (Vol. 6397, pp. 1–14). Presented at the LPAR: Logic for Programming, Artificial Intelligence, and Reasoning, Yogyakarta, Indonesia: Springer.https://doi.org/10.1007/978-3-642-16242-8_1 

Chatterjee, K., Doyen, L., Gimbert, H., &; Henzinger, T. A. (2010). Randomness for free (Vol. 6281, pp. 246–257). Presented at the MFCS: Mathematical Foundations of Computer Science, Brno, Czech Republic: Springer.https://doi.org/10.1007/978-3-642-15155-2_23 

Bloem, R., Chatterjee, K., Greimel, K., Henzinger, T. A., &; Jobstmann, B. (2010). Robustness in the presence of liveness. In T. Touili, B. Cook, &; P. Jackson (Eds.) (Vol. 6174, pp. 410–424). Presented at the CAV: Computer Aided Verification, Edinburgh, UK: Springer.https://doi.org/10.1007/978-3-642-14295-6_36 

Chatterjee, K., De Alfaro, L., Majumdar, R., &; Raman, V. (2010). Algorithms for game metrics. Logical Methods in Computer Science. International Federation of Computational Logic.https://doi.org/10.2168/LMCS-6(3:13)2010 

Barton, N. H., Etheridge, A., &; Véber, A. (2010). A new model for evolution in a spatial continuum. Electronic Journal of Probability. Institute of Mathematical Statistics.https://doi.org/10.1214/EJP.v15-741 

Danowski, P., &; Bergmann, J. (Eds.). (2010). Handbuch Bibliothek 2.0 (Vol. 41). De Gruyter.https://doi.org/10.1515/9783110232103 

Nickovic, D., &; Piterman, N. (2010). From MTL to deterministic timed automata. In T. A. Henzinger &; K. Chatterjee (Eds.) (Vol. 6246, pp. 152–167). Presented at the FORMATS: Formal Modeling and Analysis of Timed Systems, Klosterneuburg, Austria: Springer.https://doi.org/10.1007/978-3-642-15297-9_13 

Barton, N. H. (2010). Genetic linkage and natural selection. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. Royal Society.https://doi.org/10.1098/rstb.2010.0106 

Barton, N. H. (2010). What role does natural selection play in speciation? Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. Royal Society.https://doi.org/10.1098/rstb.2010.0001 

Barton, N. H. (2010). Mutation and the evolution of recombination. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. Royal Society.https://doi.org/10.1098/rstb.2009.0320 

Barton, N. H. (2010). Understanding adaptation in large populations. PLoS Genetics. Public Library of Science.https://doi.org/10.1371/journal.pgen.1000987 

Diz Muñoz, A., Krieg, M., Bergert, M., Ibarlucea Benitez, I., Müller, D., Paluch, E., &; Heisenberg, C.-P. J. (2010). Control of directed cell migration in vivo by membrane-to-cortex attachment. PLoS Biology. Public Library of Science.https://doi.org/10.1371/journal.pbio.1000544 

Nowozin, S., Gehler, P., &; Lampert, C. (2010). On parameter learning in CRF-based approaches to object class image segmentation (Vol. 6316, pp. 98–111). Presented at the ECCV: European Conference on Computer Vision, Heraklion, Crete, Greece: Springer.https://doi.org/10.1007/978-3-642-15567-3_8 

Palero, F., Hall, S., Clark, P., Johnston, D., Mackenzie Dodds, J., &; Thatje, S. (2010). DNA extraction from formalin-fixed tissue: new light from the deep sea. Scientia Marina. Consejo Superior de Investigaciones Científicas.https://doi.org/10.3989/scimar.2010.74n3465 

Wolf, V., Goel, R., Mateescu, M., &; Henzinger, T. A. (2010). Solving the chemical master equation using sliding windows. BMC Systems Biology. BioMed Central.https://doi.org/10.1186/1752-0509-4-42 

Henzinger, T. A., Hottelier, T., Kovács, L., &; Voronkov, A. (2010). Invariant and type inference for matrices (Vol. 5944, pp. 163–179). Presented at the VMCAI: Verification, Model Checking and Abstract Interpretation, Madrid, Spain: Springer.https://doi.org/10.1007/978-3-642-11319-2_14 

Henzinger, T. A., Mateescu, M., Mikeev, L., &; Wolf, V. (2010). Hybrid numerical solution of the chemical master equation (pp. 55–65). Presented at the CMSB: Computational Methods in Systems Biology, Trento, Italy: Springer.https://doi.org/10.1145/1839764.1839772 

Chatterjee, K., Doyen, L., Edelsbrunner, H., Henzinger, T. A., &; Rannou, P. (2010). Mean-payoff automaton expressions (Vol. 6269, pp. 269–283). Presented at the CONCUR: Concurrency Theory, Paris, France: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.https://doi.org/10.1007/978-3-642-15375-4_19 

Bendich, P., Edelsbrunner, H., Kerber, M., &; Patel, A. (2010). Persistent homology under non-uniform error (Vol. 6281, pp. 12–23). Presented at the MFCS: Mathematical Foundations of Computer Science, Brno, Czech Republic: Springer.https://doi.org/10.1007/978-3-642-15155-2_2 

Chatterjee, K., &; Doyen, L. (2010). Energy parity games (Vol. 6199, pp. 599–610). Presented at thehttps://doi.org/10.1007/978-3-642-14162-1_50__ICALP: Automata, Languages and Programming, 37th International Colloquium, Bordeaux, France: Springer.https://doi.org/10.1007/978-3-642-14162-1_50 

Chatterjee, K., Doyen, L., Henzinger, T. A., &; Raskin, J. (2010). Generalized mean-payoff and energy games (Vol. 8, pp. 505–516). Presented at the FSTTCS: Foundations of Software Technology and Theoretical Computer Science, Chennai, India: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.https://doi.org/10.4230/LIPIcs.FSTTCS.2010.505 

Chatterjee, K., Henzinger, T. A., Jobstmann, B., &; Singh, R. (2010). Measuring and synthesizing systems in probabilistic environments (Vol. 6174, pp. 380–395). Presented at the CAV: Computer Aided Verification, Edinburgh, United Kingdom: Springer.https://doi.org/10.1007/978-3-642-14295-6_34 

Berwanger, D., Chatterjee, K., De Wulf, M., Doyen, L., &; Henzinger, T. A. (2010). Strategy construction for parity games with imperfect information. Information and Computation. Elsevier.https://doi.org/10.1016/j.ic.2009.09.006 

Chatterjee, K., Henzinger, T. A., &; Piterman, N. (2010). Strategy logic. Information and Computation. Elsevier.https://doi.org/10.1016/j.ic.2009.07.004 

Bendich, P., Edelsbrunner, H., &; Kerber, M. (2010). Computing robustness and persistence for images. IEEE Transactions of Visualization and Computer Graphics. IEEE.https://doi.org/10.1109/TVCG.2010.139 

Papusheva, E., &; Heisenberg, C.-P. J. (2010). Spatial organization of adhesion: force-dependent regulation and function in tissue morphogenesis. EMBO Journal. Wiley-Blackwell.https://doi.org/10.1038/emboj.2010.182 

Bergmann, J., &; Danowski, P. (2010). Ist Bibliothek 2.0 überhaupt noch relevant? – Eine Einleitung in das Handbuch. In J. Bergmann &; P. Danowski (Eds.), Handbuch Bibliothek 2.0 (pp. 5–20). De Gruyter.https://doi.org/10.1515/9783110232103 

Kuncak, V., Piskac, R., Suter, P., &; Wies, T. (2010). Building a calculus of data structures. In G. Barthe &; M. Hermenegildo (Eds.) (Vol. 5944, pp. 26–44). Presented at the VMCAI: Verification, Model Checking and Abstract Interpretation, Madrid, Spain: Springer.https://doi.org/10.1007/978-3-642-11319-2_6 

Henzinger, T. A., Tomar, A., Singh, V., Wies, T., &; Zufferey, D. (2010). FlexPRICE: Flexible provisioning of resources in a cloud environment (pp. 83–90). Presented at the CLOUD: Cloud Computing, Miami, USA: IEEE.https://doi.org/10.1109/CLOUD.2010.71 

Guerraoui, R., Henzinger, T. A., Kapalka, M., &; Singh, V. (2010). Transactions in the jungle (pp. 263–272). Presented at the SPAA: ACM Symposium on Parallel Algorithms and Architectures, Santorini, Greece: ACM.https://doi.org/10.1145/1810479.1810529 

Henzinger, T. A., Tomar, A., Singh, V., Wies, T., &; Zufferey, D. (2010). A marketplace for cloud resources (pp. 1–8). Presented at the EMSOFT: Embedded Software , Arizona, USA: ACM.https://doi.org/10.1145/1879021.1879022 

Doyen, L., Henzinger, T. A., Legay, A., &; Nickovic, D. (2010). Robustness of sequential circuits (pp. 77–84). Presented at the ACSD: Application of Concurrency to System Design, IEEE.https://doi.org/10.1109/ACSD.2010.26 

Beyer, D., Henzinger, T. A., Théoduloz, G., &; Zufferey, D. (2010). Shape refinement through explicit heap analysis. In D. Rosenblum &; G. Taenzer (Eds.) (Vol. 6013, pp. 263–277). Presented at the FASE: Fundamental Approaches To Software Engineering, Paphos, Cyprus: Springer.https://doi.org/10.1007/978-3-642-12029-9_19 

Chatterjee, K., Doyen, L., &; Henzinger, T. A. (2010). Expressiveness and closure properties for quantitative languages. Logical Methods in Computer Science. International Federation of Computational Logic.https://doi.org/10.2168/LMCS-6(3:10)2010 

Alur, R., &; Cerny, P. (2010). Expressiveness of streaming string transducers (Vol. 8, pp. 1–12). Presented at the FSTTCS: Foundations of Software Technology and Theoretical Computer Science, Chennai, India: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.https://doi.org/10.4230/LIPIcs.FSTTCS.2010.1 

Cristau, J., David, C., &; Horn, F. (2010). How do we remember the past in randomised strategies? . In Proceedings of GandALF 2010 (Vol. 25, pp. 30–39). Minori, Amalfi Coast, Italy: Open Publishing Association.https://doi.org/10.4204/EPTCS.25.7 

Cerny, P., Henzinger, T. A., &; Radhakrishna, A. (2010). Simulation distances (Vol. 6269, pp. 235–268). Presented at the CONCUR: Concurrency Theory, Paris, France: Schloss Dagstuhl - Leibniz-Zentrum für Informatik.https://doi.org/10.1007/978-3-642-15375-4_18 

Chatterjee, K., Cerny, P., Henzinger, T. A., Radhakrishna, A., &; Singh, R. (2010). Quantitative synthesis for concurrent programs. IST Austria.https://doi.org/10.15479/AT:IST-2010-0004 

Cerny, P., Henzinger, T. A., &; Radhakrishna, A. (2010). Simulation distances. IST Austria.https://doi.org/10.15479/AT:IST-2010-0003 

Cerny, P., Radhakrishna, A., Zufferey, D., Chaudhuri, S., &; Alur, R. (2010). Model checking of linearizability of concurrent list implementations (Vol. 6174, pp. 465–479). Presented at the CAV: Computer Aided Verification, Edinburgh, UK: Springer.https://doi.org/10.1007/978-3-642-14295-6_41 

Chatterjee, K., Henzinger, T. A., Jobstmann, B., &; Radhakrishna, A. (2010). GIST: A solver for probabilistic games (Vol. 6174, pp. 665–669). Presented at the CAV: Computer Aided Verification, Edinburgh, UK: Springer.https://doi.org/10.1007/978-3-642-14295-6_57 

Cerny, P., Radhakrishna, A., Zufferey, D., Chaudhuri, S., &; Alur, R. (2010). Model checking of linearizability of concurrent list implementations. IST Austria.https://doi.org/10.15479/AT:IST-2010-0001 

Chatterjee, K., &; Fijalkow, N. (2010). Topological, automata-theoretic and logical characterization of finitary languages. IST Austria.https://doi.org/10.15479/AT:IST-2010-0002 

Chatterjee, K., Doyen, L., &; Henzinger, T. A. (2010). Qualitative analysis of partially-observable Markov Decision Processes (Vol. 6281, pp. 258–269). Presented at the MFCS: Mathematical Foundations of Computer Science, Brno, Czech Republic: Springer.https://doi.org/10.1007/978-3-642-15155-2_24 

Rosas, U., Barton, N. H., Copsey, L., Barbier De Reuille, P., &; Coen, E. (2010). Cryptic variation between species and the basis of hybrid performance. PLoS Biology. Public Library of Science.https://doi.org/10.1371/journal.pbio.1000429 

Chatterjee, K., &; Majumdar, R. (2010). Discounting in games across time scales (Vol. 25, pp. 22–29). Presented at the GandALF: Games, Automata, Logic, and Formal Verification, Minori, Italy: EPTCS.https://doi.org/10.4204/EPTCS.25.6 

Wies, T., Zufferey, D., &; Henzinger, T. A. (2010). Forward analysis of depth-bounded processes. In L. Ong (Ed.) (Vol. 6014, pp. 94–108). Presented at the FoSSaCS: Foundations of Software Science and Computation Structures, Paphos, Cyprus: Springer.https://doi.org/10.1007/978-3-642-12032-9_8 

Davison, A., Barton, N. H., &; Clarke, B. (2009). The effect of chirality phenotype and genotype on the fecundity and viability of Partula suturalis and Lymnaea stagnalis: Implications for the evolution of sinistral snails. Journal of Evolutionary Biology. Wiley.https://doi.org/10.1111/j.1420-9101.2009.01770.x 

Didier, F., Henzinger, T. A., Mateescu, M., &; Wolf, V. (2009). Fast adaptive uniformization of the chemical master equation (Vol. 4, pp. 118–127). Presented at the HIBI: High-Performance Computational Systems Biology, Trento, Italy: IEEE.https://doi.org/10.1109/HiBi.2009.23 

Henzinger, T. A., Jobstmann, B., &; Wolf, V. (2009). Formalisms for specifying Markovian population models (Vol. 5797, pp. 3–23). Presented at the RP: Reachability Problems, Palaiseau, France: Springer.https://doi.org/10.1007/978-3-642-04420-5_2 

Henzinger, T. A., Kirsch, C., Marques, E., &; Sokolova, A. (2009). Distributed, modular HTL (pp. 171–180). Presented at the RTSS: Real-Time Systems Symposium, Washington, DC, United States: IEEE.https://doi.org/10.1109/RTSS.2009.9 

Chatterjee, K., Doyen, L., &; Henzinger, T. A. (2009). Probabilistic weighted automata (Vol. 5710, pp. 244–258). Presented at the CONCUR: Concurrency Theory, Bologna, Italy: Springer.https://doi.org/10.1007/978-3-642-04081-8_17 

Chatterjee, K., Henzinger, T. A., &; Horn, F. (2009). Finitary winning in omega-regular games. ACM Transactions on Computational Logic (TOCL). ACM.https://doi.org/10.1145/1614431.1614432 

Polechova, J., Barton, N. H., &; Marion, G. (2009). Species’ range: Adaptation in space and time. American Naturalist. University of Chicago Press.https://doi.org/10.1086/605958 

Barton, N. H., &; De Cara, M. (2009). The evolution of strong reproductive isolation. Evolution; International Journal of Organic Evolution. Wiley.https://doi.org/10.1111/j.1558-5646.2009.00622.x 

Barton, N. H., &; Coe, J. (2009). On the application of statistical physics to evolutionary biology. Journal of Theoretical Biology. Elsevier.https://doi.org/10.1016/j.jtbi.2009.03.019 

Tripakis, S., Lickly, B., Henzinger, T. A., &; Lee, E. (2009). On relational interfaces. In EMSOFT ’09 Proceedings of the seventh ACM international conference on Embedded software (pp. 67–76). Grenoble, France: ACM.https://doi.org/10.1145/1629335.1629346 

Edelsbrunner, H., &; Harer, J. (2009). The persistent Morse complex segmentation of a 3-manifold (Vol. 5903, pp. 36–50). Presented at the 3DPH: Modelling the Physiological Human, Zermatt, Switzerland: Springer.https://doi.org/10.1007/978-3-642-10470-1_4 

Chatterjee, K., Doyen, L., &; Henzinger, T. A. (2009). Alternating weighted automata (Vol. 5699, pp. 3–13). Presented at the FCT: Fundamentals of Computation Theory, Wroclaw, Poland: Springer.https://doi.org/10.1007/978-3-642-03409-1_2 

Chatterjee, K., Doyen, L., &; Henzinger, T. A. (2009). A survey of stochastic games with limsup and liminf objectives (Vol. 5556, pp. 1–15). Presented at the ICALP: Automata, Languages and Programming, Rhodos, Greece: Springer.https://doi.org/10.1007/978-3-642-02930-1_1 

Bloem, R., Chatterjee, K., Henzinger, T. A., &; Jobstmann, B. (2009). Better quality in synthesis through quantitative objectives (Vol. 5643, pp. 140–156). Presented at the CAV: Computer Aided Verification, Grenoble, France: Springer.https://doi.org/10.1007/978-3-642-02658-4_14 

Chatterjee, K., Henzinger, T. A., Jobstmann, B., &; Radhakrishna, A. (2009). Gist: A solver for probabilistic games. IST Austria.https://doi.org/10.15479/AT:IST-2009-0003 

Chatterjee, K., Henzinger, T. A., &; Horn, F. (2009). Improved lower bounds for request-response and finitary Streett games. IST Austria.https://doi.org/10.15479/AT:IST-2009-0002 

Chatterjee, K. (2009). Probabilistic automata on infinite words: Decidability and undecidability results. IST Austria.https://doi.org/10.15479/AT:IST-2009-0004 

Chatterjee, K., Doyen, L., &; Henzinger, T. A. (2009). Qualitative analysis of partially-observable Markov decision processes. IST Austria.https://doi.org/10.15479/AT:IST-2009-0001